Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 250 of 345
Found at i:73642544 original size:7 final size:7
Alignment explanation
Indices: 73642485--73642540 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
73642475 AATTAAAAAT
73642485 AATTGAG
1 AATTGAG
*
73642492 GATTGAG
1 AATTGAG
*
73642499 GATTGAG
1 AATTGAG
*
73642506 AATTAAG
1 AATTGAG
73642513 AATTGATG
1 AATTGA-G
*
73642521 -ATTGAA
1 AATTGAG
73642527 AATTGAG
1 AATTGAG
*
73642534 TATTGAG
1 AATTGAG
73642541 TATTAAATTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 39 0.98
8 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (7 bp):
AATTGAG
Found at i:73643505 original size:29 final size:29
Alignment explanation
Indices: 73643472--73643528 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
73643462 TTAATAGAGA
*
73643472 ATAATTACATTATAATTTTCTATGTCATG
1 ATAATTACATCATAATTTTCTATGTCATG
* *
73643501 ATAATTGCATCGTAATTTTCTATGTCAT
1 ATAATTACATCATAATTTTCTATGTCAT
73643529 ATTTGGTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (29 bp):
ATAATTACATCATAATTTTCTATGTCATG
Found at i:73644361 original size:27 final size:28
Alignment explanation
Indices: 73644307--73644361 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
73644297 TTGCAGTCTG
*
73644307 GGGCCTGAGCCCATTACAGATTCAGTTT
1 GGGCCTGAGCCCATTACAGATACAGTTT
73644335 GGGCCTTG-GCCCATT-CAGATACAGTTT
1 GGGCC-TGAGCCCATTACAGATACAGTTT
73644362 CAAATATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 11 0.44
28 12 0.48
29 2 0.08
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.29
Consensus pattern (28 bp):
GGGCCTGAGCCCATTACAGATACAGTTT
Found at i:73648303 original size:124 final size:124
Alignment explanation
Indices: 73648081--73648305 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
73648071 GAATTATGTG
* * * ** * * *
73648081 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
73648146 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
73648205 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
73648270 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
73648306 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:73648427 original size:40 final size:40
Alignment explanation
Indices: 73648300--73648429 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73648290 ATGCTGGAAA
* *
73648300 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
73648340 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73648380 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73648420 TTATATCCGG
1 TTATATCCGG
73648430 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73648428 original size:80 final size:80
Alignment explanation
Indices: 73648262--73648429 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
73648252 CAATTGAATG
* * *
73648262 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
73648327 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
73648342 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
73648406 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
73648422 ATATCCGG
1 ATATCCGG
73648430 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:73655913 original size:14 final size:15
Alignment explanation
Indices: 73655894--73655922 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73655884 GGATATCTCA
73655894 TATTCAAT-GCATAT
1 TATTCAATAGCATAT
73655908 TATTCAATAGCATAT
1 TATTCAATAGCATAT
73655923 AAGCACAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (15 bp):
TATTCAATAGCATAT
Found at i:73659479 original size:19 final size:19
Alignment explanation
Indices: 73659432--73659471 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
73659422 AGAGAATTTT
73659432 GATGAAATTGTGATTTAGG
1 GATGAAATTGTGATTTAGG
73659451 GATGAAATTGTGATTTAGG
1 GATGAAATTGTGATTTAGG
73659470 GA
1 GA
73659472 CTAAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (19 bp):
GATGAAATTGTGATTTAGG
Found at i:73663429 original size:40 final size:40
Alignment explanation
Indices: 73663333--73663485 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
73663323 CGAATGGTAT
* * * *
73663333 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
73663374 CCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
73663414 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
73663454 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
73663486 CGCTATATCC
Statistics
Matches: 95, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 70 0.74
41 25 0.26
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:73669071 original size:124 final size:124
Alignment explanation
Indices: 73668849--73669073 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
73668839 GAATTATGTG
* * * ** * * *
73668849 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
73668914 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
73668973 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
*
73669038 GCTAAGTCCTGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
73669074 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 1 0.01
124 85 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:73669195 original size:40 final size:40
Alignment explanation
Indices: 73669068--73669197 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73669058 ATGCTGGAAA
* *
73669068 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
73669108 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73669148 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73669188 TTATATCCGG
1 TTATATCCGG
73669198 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73685161 original size:37 final size:37
Alignment explanation
Indices: 73685082--73685164 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
73685072 AACCTTTAGT
* * *
73685082 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
* *
73685119 TCGGGTCTTACCCTGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
73685156 TCGGGTCTT
1 TCGGGTCTT
73685165 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:73685351 original size:47 final size:47
Alignment explanation
Indices: 73685282--73686149 Score: 1308
Period size: 47 Copynumber: 18.3 Consensus size: 47
73685272 CCCTTCGGGA
* * * * *
73685282 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73685329 CTTATTACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73685376 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73685423 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
73685470 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73685517 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73685564 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
73685611 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73685658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73685705 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73685752 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
73685799 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73685846 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73685893 CTTGTCACATATATACACTTT-ACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73685939 CTTATCACA-ATATACACTTTCACATTCATCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTT--CA--CAT----T-CATCACATCGGCCATTAGGC
73685994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73686041 CTTGTCACTTATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
73686088 CTTATCACATATATGCACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73686135 CTTATCACATATATA
1 CTTATCACATATATA
73686150 TATATCTCAT
Statistics
Matches: 754, Mismatches: 56, Indels: 22
0.91 0.07 0.03
Matches are distributed among these distances:
45 11 0.01
46 32 0.04
47 660 0.88
48 2 0.00
50 3 0.00
52 3 0.00
54 3 0.00
55 29 0.04
56 11 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73685363 original size:25 final size:25
Alignment explanation
Indices: 73685335--73685410 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
73685325 CGGCCTTATT
*
73685335 ACATATATACACTTTCACATTCATC
1 ACATATATGCACTTTCACATTCATC
* * * *
73685360 ACAT-T-GGC-CATTCGGCCTT-ATC
1 ACATATATGCACTTTC-ACATTCATC
73685382 ACATATATGCACTTTCACATTCATC
1 ACATATATGCACTTTCACATTCATC
73685407 ACAT
1 ACAT
73685411 GGGCCATTAG
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
22 11 0.30
23 5 0.14
24 6 0.16
25 15 0.41
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (25 bp):
ACATATATGCACTTTCACATTCATC
Found at i:73694778 original size:27 final size:27
Alignment explanation
Indices: 73694741--73694985 Score: 142
Period size: 27 Copynumber: 9.1 Consensus size: 27
73694731 GTCGTTAAGA
* *
73694741 CCCCGGATTGTAAAATTATCGAAGTAC
1 CCCCGGTTTGTAAAATTATCGAAATAC
73694768 CCCCGGTTTGTAAAATTATCGAAATAC
1 CCCCGGTTTGTAAAATTATCGAAATAC
* **
73694795 CCTCTATTTGTAAAATTA-CTGAAATAC
1 CCCCGGTTTGTAAAATTATC-GAAATAC
*** * *
73694822 CCCCAAATTGTTAAATTACCGAAATA-
1 CCCCGGTTTGTAAAATTATCGAAATAC
* ** * *
73694848 CTCCAATTTGTAAAATTACCAAAATAC
1 CCCCGGTTTGTAAAATTATCGAAATAC
* * **
73694875 TCTCAATTTGTAAAATTA-CAGAAATAC
1 CCCCGGTTTGTAAAATTATC-GAAATAC
** *
73694902 CCCCAATTTGTAAAATTA-CCAAGATA-
1 CCCCGGTTTGTAAAATTATCGAA-ATAC
* * *
73694928 CCCCTGTAATGTAAAATTACCGAAATA-
1 CCCCGGT-TTGTAAAATTATCGAAATAC
** * *
73694955 CCCTTGTAGTGTAAAATTATTGAAATAC
1 CCCCGGT-TTGTAAAATTATCGAAATAC
73694983 CCC
1 CCC
73694986 TGTAAGGCAA
Statistics
Matches: 182, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
26 31 0.17
27 144 0.79
28 7 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
CCCCGGTTTGTAAAATTATCGAAATAC
Found at i:73694838 original size:54 final size:54
Alignment explanation
Indices: 73694748--73694985 Score: 207
Period size: 54 Copynumber: 4.4 Consensus size: 54
73694738 AGACCCCGGA
* *** * *
73694748 TTGTAAAATTA-TCGAAGTACCCCCGGTTTGTAAAATTATCGAAATACCCTCTAT
1 TTGTAAAATTACT-GAAATACCCCCAAATTGTAAAATTACCGAAATACCCTCAAT
* *
73694802 TTGTAAAATTACTGAAATACCCCCAAATTGTTAAATTACCGAAATACTC-CAAT
1 TTGTAAAATTACTGAAATACCCCCAAATTGTAAAATTACCGAAATACCCTCAAT
** * * * * *
73694855 TTGTAAAATTACCAAAATACTCTCAATTTGTAAAATTACAGAAATACCCCCAAT
1 TTGTAAAATTACTGAAATACCCCCAAATTGTAAAATTACCGAAATACCCTCAAT
* ** **
73694909 TTGTAAAATTAC-CAAGATACCCCTGTAA-TGTAAAATTACCGAAATACCCT-TGT
1 TTGTAAAATTACTGAA-ATACCCC-CAAATTGTAAAATTACCGAAATACCCTCAAT
* *
73694962 AGTGTAAAATTATTGAAATACCCC
1 -TTGTAAAATTACTGAAATACCCC
73694986 TGTAAGGCAA
Statistics
Matches: 149, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
53 47 0.32
54 98 0.66
55 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACTGAAATACCCCCAAATTGTAAAATTACCGAAATACCCTCAAT
Found at i:73694873 original size:80 final size:80
Alignment explanation
Indices: 73694747--73694985 Score: 259
Period size: 80 Copynumber: 3.0 Consensus size: 80
73694737 AAGACCCCGG
* ** *
73694747 ATTGTAAAATTATCGAAG-TACCCCCGGTTTGTAAAATTATCGAAATACCCTCTATTTGTAAAAT
1 ATTGTAAAATTA-CCAAGATA-CCCCAATTTGTAAAATTACCGAAATACCCTCTATTTGTAAAAT
73694811 TACTGAAATACCCCCAA
64 TACTGAAATACCCCCAA
* * * * *
73694828 ATTGTTAAATTACCGAA-ATACTCCAATTTGTAAAATTACCAAAATACTCTCAATTTGTAAAATT
1 ATTGTAAAATTACC-AAGATACCCCAATTTGTAAAATTACCGAAATACCCTCTATTTGTAAAATT
*
73694892 ACAGAAATACCCCCAA
65 ACTGAAATACCCCCAA
* ** * * *
73694908 TTTGTAAAATTACCAAGATACCCCTGTAATGTAAAATTACCGAAATACCCT-TGTAGTGTAAAAT
1 ATTGTAAAATTACCAAGATACCCCAAT-TTGTAAAATTACCGAAATACCCTCTAT-TTGTAAAAT
*
73694972 TATTGAAATACCCC
64 TACTGAAATACCCC
73694986 TGTAAGGCAA
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 73 0.56
81 55 0.42
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
ATTGTAAAATTACCAAGATACCCCAATTTGTAAAATTACCGAAATACCCTCTATTTGTAAAATTA
CTGAAATACCCCCAA
Found at i:73694997 original size:27 final size:27
Alignment explanation
Indices: 73694911--73694998 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
73694901 CCCCCAATTT
*
73694911 GTAAAATTACC-AAGATACCCCTGTAAT
1 GTAAAATTACCGAA-ATACCCCTGTAAG
*
73694938 GTAAAATTACCGAAATACCCTTGT-AG
1 GTAAAATTACCGAAATACCCCTGTAAG
**
73694964 TGTAAAATTATTGAAATACCCCTGTAAG
1 -GTAAAATTACCGAAATACCCCTGTAAG
*
73694992 GCAAAAT
1 GTAAAAT
73694999 GACTATTTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 47 0.90
28 4 0.08
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCTGTAAG
Found at i:73709918 original size:7 final size:7
Alignment explanation
Indices: 73709906--73709930 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73709896 AGCCAAGGCC
73709906 AACGAAG
1 AACGAAG
73709913 AACGAAG
1 AACGAAG
73709920 AACGAAG
1 AACGAAG
73709927 AACG
1 AACG
73709931 GAGCAACTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.28, T:0.00
Consensus pattern (7 bp):
AACGAAG
Found at i:73711000 original size:13 final size:13
Alignment explanation
Indices: 73710982--73711006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73710972 TGCCCTATTT
73710982 TCACACGACCGTA
1 TCACACGACCGTA
73710995 TCACACGACCGT
1 TCACACGACCGT
73711007 GTCTCCTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.16, T:0.16
Consensus pattern (13 bp):
TCACACGACCGTA
Found at i:73715994 original size:43 final size:43
Alignment explanation
Indices: 73715946--73716032 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
73715936 TGAAAAGAGA
73715946 TAGAATTTTAGGTTGGTGATAAGGAATTCTTGAAAGTATCACC
1 TAGAATTTTAGGTTGGTGATAAGGAATTCTTGAAAGTATCACC
73715989 TAGAATTTTAGGTTGGTGATAAGGAATTCTTGAAAGTATCACC
1 TAGAATTTTAGGTTGGTGATAAGGAATTCTTGAAAGTATCACC
73716032 T
1 T
73716033 TGGAAGAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (43 bp):
TAGAATTTTAGGTTGGTGATAAGGAATTCTTGAAAGTATCACC
Found at i:73723223 original size:24 final size:24
Alignment explanation
Indices: 73723173--73723226 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
73723163 AATCGAATTT
*
73723173 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
73723197 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
73723221 GCACAC
1 GCACAC
73723227 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:73731979 original size:41 final size:41
Alignment explanation
Indices: 73731934--73732051 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73731924 TGAAAGATAA
73731934 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73731975 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73732005 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73732046 ATGTAG
1 ATGTAG
73732052 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73731990 original size:71 final size:71
Alignment explanation
Indices: 73731902--73732065 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73731892 GAGATGTATC
73731902 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73731967 AGGACA
66 AGGACA
73731973 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73732038 AGGACA
66 AGGACA
73732044 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73732066 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73741899 original size:40 final size:40
Alignment explanation
Indices: 73741854--73742020 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
73741844 CGGAATATAA
*
73741854 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73741894 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73741934 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
73741974 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
73742013 CCGGATAT
1 CCGGATAT
73742021 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73742004 original size:80 final size:79
Alignment explanation
Indices: 73741870--73742020 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
73741860 ATAACCATGT
*
73741870 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
73741935 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
73741950 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
73742013 CCGGATAT
64 CCGGATAT
73742021 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:73749895 original size:40 final size:40
Alignment explanation
Indices: 73749850--73749979 Score: 158
Period size: 40 Copynumber: 3.2 Consensus size: 40
73749840 CGGAATATAA
*
73749850 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
73749890 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
73749930 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
73749970 CCGGATATAA
1 CCGGATATAA
73749980 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 72 0.94
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73749994 original size:40 final size:40
Alignment explanation
Indices: 73749866--73750016 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
73749856 ATAAGCATGT
* * *
73749866 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
73749906 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
73749946 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
73749986 GCATAATTGTCTTCGGG-GTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73750017 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.15
40 77 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:73752544 original size:29 final size:29
Alignment explanation
Indices: 73752502--73752559 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
73752492 AACAATCCAA
73752502 GCACATCAAAGCATAGTCGAATGTATCAT
1 GCACATCAAAGCATAGTCGAATGTATCAT
73752531 GCACATCAAAGCATAGTCGAATGTATCAT
1 GCACATCAAAGCATAGTCGAATGTATCAT
73752560 TCTTCTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (29 bp):
GCACATCAAAGCATAGTCGAATGTATCAT
Found at i:73756342 original size:27 final size:27
Alignment explanation
Indices: 73756304--73756366 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
73756294 TTGAATTGTA
* *
73756304 TTAGATCAAGAACAAAGAAAATCGGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
73756331 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
73756358 TTAGATCGA
1 TTAGATCGA
73756367 AGGAAGTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (27 bp):
TTAGATCGAGAACAAAGAAAATCAGAC
Found at i:73756713 original size:42 final size:43
Alignment explanation
Indices: 73756580--73756713 Score: 132
Period size: 44 Copynumber: 3.1 Consensus size: 43
73756570 GGAACGTTGT
73756580 CATCG-ATCTGAGATATCGTGTAAGACCATGTCTGGGACATAGG
1 CATCGTATCTGAGAT-TCGTGTAAGACCATGTCTGGGACATAGG
* * * * *
73756623 CCTCGGT-T-TGAGATTTACATGTAAGACCATGTTTGGGACATCGA
1 CATC-GTATCTGAGA-TT-CGTGTAAGACCATGTCTGGGACATAGG
* * *
73756667 CATCGTATCTGAG-TTCGTGTAAGACCCTGTCTGGGGCAGAGG
1 CATCGTATCTGAGATTCGTGTAAGACCATGTCTGGGACATAGG
73756709 CATCG
1 CATCG
73756714 ATACTAAATT
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
42 25 0.35
43 13 0.18
44 30 0.42
45 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
CATCGTATCTGAGATTCGTGTAAGACCATGTCTGGGACATAGG
Found at i:73763792 original size:42 final size:42
Alignment explanation
Indices: 73763667--73763848 Score: 134
Period size: 43 Copynumber: 4.2 Consensus size: 42
73763657 TTCTAAAGGA
* * *
73763667 ACATTGTCATCGATCTGAGATATCGTGTAAGACCGTGTCTAGG
1 ACATTGGCATCGATCTGAGAT-TCGTGTAAGACCATGTCTGGG
** * * * *
73763710 ACACAGGCCTCAATTTGAGATTTACGTGTAAGACAATGTCTGGG
1 ACATTGGCATCGATCTGAGA-TT-CGTGTAAGACCATGTCTGGG
*
73763754 ACATTGGCATCGTATCTGAG-TTCGTGTAAGACCCTGTCTGGG
1 ACATTGGCATCG-ATCTGAGATTCGTGTAAGACCATGTCTGGG
* ** * ** *
73763796 GCAGAGGCATCGATACTGA-ATTACATGTAAGACCACATCCGGG
1 ACATTGGCATCGAT-CTGAGATT-CGTGTAAGACCATGTCTGGG
*
73763839 ACGTTGGCAT
1 ACATTGGCAT
73763849 TGTACCCGTT
Statistics
Matches: 105, Mismatches: 28, Indels: 12
0.72 0.19 0.08
Matches are distributed among these distances:
41 2 0.02
42 33 0.31
43 38 0.36
44 26 0.25
45 6 0.06
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
ACATTGGCATCGATCTGAGATTCGTGTAAGACCATGTCTGGG
Found at i:73768185 original size:5 final size:5
Alignment explanation
Indices: 73768175--73768207 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
73768165 ACAATTTGTA
73768175 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
73768208 GAACATACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:73769647 original size:7 final size:7
Alignment explanation
Indices: 73769588--73769648 Score: 72
Period size: 7 Copynumber: 9.0 Consensus size: 7
73769578 AATCCCAAAC
73769588 CCTTAAA
1 CCTTAAA
*
73769595 CCCTAAA
1 CCTTAAA
73769602 CC-TAAA
1 CCTTAAA
73769608 CC-TAAA
1 CCTTAAA
73769614 CCTTAAA
1 CCTTAAA
73769621 CCTTAAA
1 CCTTAAA
* *
73769628 CTTTGAA
1 CCTTAAA
73769635 CCTTAAA
1 CCTTAAA
*
73769642 CATTAAA
1 CCTTAAA
73769649 TCTGAAACCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
6 12 0.26
7 35 0.74
ACGTcount: A:0.44, C:0.28, G:0.02, T:0.26
Consensus pattern (7 bp):
CCTTAAA
Found at i:73769718 original size:7 final size:7
Alignment explanation
Indices: 73769675--73769724 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
73769665 TAAATTTTAG
*
73769675 GGTTCGA
1 GGTTCAA
*
73769682 GGTTCGA
1 GGTTCAA
*
73769689 GGTTCGA
1 GGTTCAA
73769696 GGTTCAA
1 GGTTCAA
73769703 GGTTCAA
1 GGTTCAA
*
73769710 GGTTTAA
1 GGTTCAA
73769717 GGTTCAA
1 GGTTCAA
73769724 G
1 G
73769725 ATAAAATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.22, C:0.12, G:0.36, T:0.30
Consensus pattern (7 bp):
GGTTCAA
Found at i:73774159 original size:63 final size:63
Alignment explanation
Indices: 73774060--73774189 Score: 215
Period size: 63 Copynumber: 2.1 Consensus size: 63
73774050 ATCACATGGA
* * * *
73774060 TATATTCTTATCACATCAGGAATGAGGGGCATCTTAATAGAGTTTGAATTACCAAATTTAAGT
1 TATATCCTTATCACATCAAGAATGAGGCGCATCTTAATAGAGCTTGAATTACCAAATTTAAGT
*
73774123 TATATCCTTATCACATCAAGAATGAGGCGCATCTTAATTGAGCTTGAATTACCAAATTTAAGT
1 TATATCCTTATCACATCAAGAATGAGGCGCATCTTAATAGAGCTTGAATTACCAAATTTAAGT
73774186 TATA
1 TATA
73774190 AATTAGGTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (63 bp):
TATATCCTTATCACATCAAGAATGAGGCGCATCTTAATAGAGCTTGAATTACCAAATTTAAGT
Found at i:73777442 original size:42 final size:42
Alignment explanation
Indices: 73777383--73777544 Score: 184
Period size: 42 Copynumber: 3.8 Consensus size: 42
73777373 AAGGTTACTA
*
73777383 AGACTACGTGTAAGACCATATCTAGGATATGGCATC-AGTATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGA-TATG
*
73777425 AGACTTCGTGTAAGACCATATCTAGGATATGGCATTGATATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATATG
* * * * * *
73777467 AGACTTCGTATAAGGCCATAGCTGGGCTATTGGCATCGATACG
1 AGACTTCGTGTAAGACCATATCTAGGATA-TGGCATCGATATG
* * *
73777510 AGA-TCCCATGTAAGACCATATCTGGGATATGGCAT
1 AGACT-TCGTGTAAGACCATATCTAGGATATGGCAT
73777545 TGGTATGGTA
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 69 0.68
43 33 0.32
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATATG
Found at i:73780111 original size:40 final size:39
Alignment explanation
Indices: 73780067--73780248 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73780057 GTTCAAAACA
* * ** * *
73780067 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73780107 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73780147 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73780186 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73780225 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73780249 CAATTTGCAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73780259 original size:39 final size:39
Alignment explanation
Indices: 73780097--73780251 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
73780087 TATGGTAACC
* *
73780097 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73780137 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73780176 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73780215 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
73780252 TTTGCACATT
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73802373 original size:42 final size:42
Alignment explanation
Indices: 73802327--73802423 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
73802317 TTAAGACTAT
73802327 GTGTAAGACCATATCTAGGATATGGCATC-AGTATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCGA-TATGAGACTTC
* *
73802369 GTGTAAGACCATATTTGGGATATGGCATCGATATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTC
*
73802411 GTATAAGACCATA
1 GTGTAAGACCATA
73802424 ACTGGGCTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 50 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTC
Found at i:73803958 original size:46 final size:46
Alignment explanation
Indices: 73803905--73804077 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73803895 TGGTTGAGCA
73803905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
* * * *
73803951 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--ATG
* * *
73803996 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
* *
73804044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73804078 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
Found at i:73804061 original size:93 final size:93
Alignment explanation
Indices: 73803902--73804072 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73803892 GGATGGTTGA
*
73803902 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAACTCGTTGAGT
73803967 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
73803995 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAACTCGTTGAGT
73804060 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73804073 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73816407 original size:79 final size:80
Alignment explanation
Indices: 73816324--73816474 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 80
73816314 GTTATAGTGA
* * * *
73816324 CTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAATGCCTTCGGG-CT
1 CTCGCACGAATGCCTTC-AGATCCTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACT
73816386 TAGCCCGGATTTATTAT
64 TAGCCCGGATTTATTAT
** *
73816403 CTCGCACGAATGCCTTCAGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTA
1 CTCGCACGAATGCCTTCAGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
73816468 GCCCGGA
66 GCCCGGA
73816475 CATCATTCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 42 0.68
80 18 0.29
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
CTCGCACGAATGCCTTCAGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
GCCCGGATTTATTAT
Found at i:73816415 original size:39 final size:40
Alignment explanation
Indices: 73816283--73816419 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
73816273 GGATATAACG
* * * * *
73816283 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCTGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
73816323 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
73816363 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
73816402 TCTCGCACGAATGCCTTC
1 ACTCGCACGAATGCCTTC
73816420 AGATCCTAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 30 0.37
40 48 0.59
41 4 0.05
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:73816474 original size:40 final size:40
Alignment explanation
Indices: 73816285--73816474 Score: 129
Period size: 40 Copynumber: 4.8 Consensus size: 40
73816275 ATATAACGAC
* ** * * *
73816285 TCGCTCAAATGCCTTCGGGACAAAGCCTGGTTATAGTGAC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
73816325 TCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACT
1 TCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
* * *
73816366 T-GCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTATC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * * *
73816404 TCGCACGAATGCCTTC-AGATCCTAGTCCGGATATAGTCACT
1 TCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACT
*
73816445 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TCGCACAAAGCCTTCGGGACTTAGCCCGGA
73816475 CATCATTCGA
Statistics
Matches: 114, Mismatches: 27, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
38 2 0.02
39 28 0.25
40 74 0.65
41 10 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
Found at i:73820640 original size:59 final size:60
Alignment explanation
Indices: 73820544--73820676 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
73820534 GACAAGATTG
* * *
73820544 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
73820604 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
73820663 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73820677 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:73820689 original size:29 final size:29
Alignment explanation
Indices: 73820574--73820676 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
73820564 AAAATTGTAC
*
73820574 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
73820603 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
73820633 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
73820662 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73820677 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:73827639 original size:79 final size:81
Alignment explanation
Indices: 73827548--73827731 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
73827538 ACGACTCGCT
** *
73827548 CAAATGCCTTCGGGACGAAGCCCGG-TTAAGTGA-CTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTAA-TGATCTCGCACGAATGCCTTC-GGATCCTAACCC
* *
73827610 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* * **
73827627 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTAATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
*
73827691 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
73827707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73827732 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 13 0.14
79 59 0.66
80 18 0.20
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAATGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:73827672 original size:39 final size:40
Alignment explanation
Indices: 73827541--73827731 Score: 149
Period size: 40 Copynumber: 4.8 Consensus size: 40
73827531 GGATATAACG
* * * * *
73827541 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTAAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATTTAGTA
*
73827580 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
73827620 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * ** * *
73827659 TCTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* * *
73827699 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
73827732 CATCATTCGA
Statistics
Matches: 123, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 56 0.46
40 57 0.46
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:73831012 original size:6 final size:6
Alignment explanation
Indices: 73830994--73831138 Score: 93
Period size: 6 Copynumber: 23.3 Consensus size: 6
73830984 AAGAAACATT
* *
73830994 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
73831043 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
73831093 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
73831139 GTGAATGCAA
Statistics
Matches: 108, Mismatches: 16, Indels: 30
0.70 0.10 0.19
Matches are distributed among these distances:
5 8 0.07
6 78 0.72
7 18 0.17
8 4 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:73831037 original size:31 final size:31
Alignment explanation
Indices: 73831005--73831138 Score: 223
Period size: 31 Copynumber: 4.3 Consensus size: 31
73830995 TCAGAACTAG
* * * *
73831005 AATCAGAATCAGAATCAGGTGACAGAATTAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
73831036 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
73831067 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
73831098 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
73831130 AATCAGAAT
1 AATCAGAAT
73831139 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 87 0.89
32 11 0.11
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:73831338 original size:26 final size:27
Alignment explanation
Indices: 73831275--73831348 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
73831265 GCTCAGTTAT
* *
73831275 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
73831302 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
73831328 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
73831349 TTAACAGAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:73831535 original size:22 final size:23
Alignment explanation
Indices: 73831507--73831568 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
73831497 GCAAATACGT
*
73831507 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
73831529 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
73831551 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
73831569 TAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:73832405 original size:27 final size:27
Alignment explanation
Indices: 73832026--73832405 Score: 598
Period size: 27 Copynumber: 14.1 Consensus size: 27
73832016 GGTATCTCAA
* * *
73832026 TAATTCCACCCTACAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
73832053 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
**
73832080 TAATTCTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73832107 TAATTCTACACTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73832134 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
73832161 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
73832188 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
73832215 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
73832242 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
73832269 TAATTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73832296 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73832323 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
73832350 TAATTCTACCCTGCAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
73832377 TAATTCTACCCTACAGGGGTATTTGGG
1 TAATTCTACCCTACAGGGGTATTTCGG
73832404 TA
1 TA
73832406 GTTTTGTAAA
Statistics
Matches: 324, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 324 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:73832478 original size:27 final size:26
Alignment explanation
Indices: 73832448--73832787 Score: 347
Period size: 27 Copynumber: 12.6 Consensus size: 26
73832438 ATAAATCAAT
* * *
73832448 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAA-ACCAG
*** ** *
73832475 GGTATTTCCATAATTTTACAGGTCGAG
1 GGTATTTTGGTAATTTTACA-AACCAG
** * *
73832502 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
*
73832529 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
*
73832556 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
*
73832583 GGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTACAAACCAG
* *
73832609 TGGTATTTTGGTAATTTTATAAACAAAG
1 -GGTATTTTGGTAATTTTACAAAC-CAG
*
73832637 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
* **
73832664 GGTATTTTGGTAATTCTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACC-AG
73832691 GGTATTTTGGTAATTTTACAAACCAG
1 GGTATTTTGGTAATTTTACAAACCAG
* * *
73832717 GGTTATTTTGGTGATTTTATAAACTAAG
1 GG-TATTTTGGTAATTTTACAAAC-CAG
73832745 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCA-G
73832772 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
73832788 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.03
27 250 0.94
28 7 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAG
Found at i:73832501 original size:81 final size:81
Alignment explanation
Indices: 73832416--73832575 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
73832406 GTTTTGTAAA
* * * *
73832416 TCGAGGGTAAAACGGTAA-TTCTATAAATCAATGGTACTTTGGTAATTTTACAAGTCGA-GGGTA
1 TCGAGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTTGGTAATTTTACAA-ACGAGGGGTA
73832479 TTTCCATAATTTTACAGG
64 TTTCCATAATTTTACAGG
*** * * *
73832497 TCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATT
1 TCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAAACGAGGGGTATT
**
73832562 TTGATAATTTTACA
66 TCCATAATTTTACA
73832576 AACCAGGGGT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.92
82 3 0.05
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (81 bp):
TCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAAACGAGGGGTATT
TCCATAATTTTACAGG
Found at i:73832794 original size:27 final size:27
Alignment explanation
Indices: 73832501--73832787 Score: 385
Period size: 27 Copynumber: 10.6 Consensus size: 27
73832491 TACAGGTCGA
** * *
73832501 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73832528 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73832555 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73832582 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
73832609 TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73832636 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
73832663 GGGTATTTTGGTAATTCTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
73832690 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
73832717 GGTTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
73832744 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
73832771 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
73832788 GGTAAACTAA
Statistics
Matches: 223, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 223 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:73834739 original size:6 final size:6
Alignment explanation
Indices: 73834721--73834870 Score: 112
Period size: 6 Copynumber: 24.3 Consensus size: 6
73834711 AAGAAACATT
*
73834721 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
73834770 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
73834821 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATAAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
73834869 AT
1 AT
73834871 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
5 8 0.07
6 89 0.78
7 13 0.11
8 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:73834742 original size:18 final size:18
Alignment explanation
Indices: 73834721--73834870 Score: 112
Period size: 19 Copynumber: 8.1 Consensus size: 18
73834711 AAGAAACATT
73834721 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
73834739 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
73834756 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
*
73834776 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
73834795 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
73834813 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
*
73834832 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
* *
73834852 A-CAGAATAAAAATCAGA
1 ATCAGAATCAGAATCAGA
73834869 AT
1 AT
73834871 GTGAATGCAA
Statistics
Matches: 105, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
17 7 0.07
18 39 0.37
19 52 0.50
20 7 0.07
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:73834768 original size:31 final size:31
Alignment explanation
Indices: 73834730--73834870 Score: 237
Period size: 31 Copynumber: 4.5 Consensus size: 31
73834720 TATCAGAACT
* * *
73834730 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
73834761 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
73834792 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
73834823 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
73834854 AGAATAAAAATCAGAAT
1 AGAATCAAAATCAGAAT
73834871 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:73834794 original size:25 final size:25
Alignment explanation
Indices: 73834741--73834842 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
73834731 GAATCAGAAT
73834741 CAGAATCAGAATCAGGTGA-CA-G-AA
1 CAGAATCAGAATCA-GT-ATCAGGTAA
73834765 TCAGAATCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGTATCAGGTAA
73834791 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAG------AATCAGAATCAGTATCAGGTAA
* *
73834822 CAGAATCAAAATCAGAATCAG
1 CAGAATCAGAATCAGTATCAG
73834843 TATCAGGTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 34 0.52
26 2 0.03
31 25 0.38
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:73834804 original size:62 final size:62
Alignment explanation
Indices: 73834705--73834870 Score: 237
Period size: 62 Copynumber: 2.7 Consensus size: 62
73834695 TAACCCATTA
* * * * *
73834705 CAGAATAAGAAACATTATCA-G-AACTAGAATCAGAATCAGAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAATCAAAATCAGAATCAGAATCAGGTAACAGAAT
*
73834766 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGAATCAGGTAACAGAAT
* *
73834828 CAAAATCAGAATCAGTATCAGGTAACAGAATAAAAATCAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAAT
73834871 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
61 17 0.18
62 75 0.79
63 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAATCAGAATCAGGTAACAGAAT
Found at i:73835069 original size:26 final size:27
Alignment explanation
Indices: 73835006--73835079 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
73834996 GCTCAGTTAT
* *
73835006 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
73835033 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
73835059 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
73835080 TTAATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:73835266 original size:22 final size:22
Alignment explanation
Indices: 73835238--73835302 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
73835228 GCAAATACGT
*
73835238 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
73835260 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
73835282 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
73835303 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:73835993 original size:27 final size:27
Alignment explanation
Indices: 73835752--73836000 Score: 372
Period size: 27 Copynumber: 9.2 Consensus size: 27
73835742 AGGTATCTTA
* **
73835752 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
73835779 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
73835806 ATAATTCTACCCTATAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
73835833 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
73835860 GTAATTCTACCCTACAAGGATATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
73835887 GTAATTCTACCCTACAGGGGTATTACG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
73835914 ATAATTCAACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
73835941 TTAATTCTACTCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
73835968 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
73835995 GTAATT
1 GTAATT
73836001 TTGTAAATCG
Statistics
Matches: 200, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:73836335 original size:80 final size:79
Alignment explanation
Indices: 73836077--73836349 Score: 334
Period size: 80 Copynumber: 3.4 Consensus size: 79
73836067 GGTATTTCCA
** * * * * * *
73836077 TAATTTTACAAGTCGAGGATATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTACAAA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTGGTATTTTACAAA
*
73836142 CTAGGGGTATTTTGA
65 CTAGGGGTATTTTGG
* * * * *
73836157 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC-CAGGGTATTTTGGT-ATTTTACAA
73836222 ACTAGGGGTATTTTGG
64 ACTAGGGGTATTTTGG
*
73836238 TAATTTGT--AAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTGATTTTATAA
1 TAATTT-TACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGT-ATTTTACAA
* *
73836301 ACCAAGGGTATTTTGG
64 ACTAGGGGTATTTTGG
73836317 TAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTT
73836350 GGTAAACTAA
Statistics
Matches: 165, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 40 0.24
80 93 0.56
81 30 0.18
82 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (79 bp):
TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTATTTTACAAAC
TAGGGGTATTTTGG
Found at i:73836356 original size:27 final size:27
Alignment explanation
Indices: 73836036--73836349 Score: 348
Period size: 27 Copynumber: 11.7 Consensus size: 27
73836026 TTCTATGAAT
* **
73836036 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** **
73836063 CGAGGGTATTTCCATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * * *
73836090 CGAGGATATTTTAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
73836117 CAGGGGTATTTTGGTAA-TTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
73836143 TAGGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
73836170 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
73836197 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
73836224 TAGGGGTATTTTGGTAATTTGT--AAAC
1 CAAGGGTATTTTGGTAATTT-TACAAAC
73836250 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
73836277 C-AGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
73836303 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
73836330 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
73836350 GGTAAACTAA
Statistics
Matches: 248, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
25 1 0.00
26 68 0.27
27 178 0.72
28 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:73836365 original size:53 final size:52
Alignment explanation
Indices: 73836096--73836349 Score: 321
Period size: 53 Copynumber: 4.8 Consensus size: 52
73836086 AAGTCGAGGA
* * * * * *
73836096 TATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTATAAACCA-AGG
* * *
73836149 TATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAA-TTTATAAACCAA-GG
* * *
73836203 TATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTATAAACCAA-GG
*
73836256 TATTTTGGTAATTTTACAAACCA-GGGTATTTTGGTGATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT-AATTTATAAACCAA-GG
*
73836309 TATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
73836350 GGTAAACTAA
Statistics
Matches: 180, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
52 12 0.07
53 109 0.61
54 59 0.33
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (52 bp):
TATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTATAAACCAAGG
Found at i:73838273 original size:6 final size:6
Alignment explanation
Indices: 73838255--73838351 Score: 92
Period size: 6 Copynumber: 15.8 Consensus size: 6
73838245 AAGAAACATT
*
73838255 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
73838304 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
73838352 GTAACAGAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
5 4 0.05
6 63 0.83
7 7 0.09
8 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:73838299 original size:31 final size:31
Alignment explanation
Indices: 73838264--73838363 Score: 173
Period size: 31 Copynumber: 3.2 Consensus size: 31
73838254 TATCAGAACT
* *
73838264 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
73838295 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
73838326 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
73838357 AGAATCA
1 AGAATCA
73838364 AAAATTAGAA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:73838330 original size:19 final size:19
Alignment explanation
Indices: 73838306--73838363 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
73838296 GAATCAGAAT
73838306 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
73838325 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
73838337 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
73838356 CAGAATCA
1 CAGAATCA
73838364 AAAATTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:73838559 original size:27 final size:26
Alignment explanation
Indices: 73838511--73838584 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
73838501 GCTCAGTTAT
* * *
73838511 CAGACATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGA-A
*
73838538 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAAAGCCACCAGAA
*
73838564 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
73838585 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 20 0.49
27 21 0.51
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGCCACCAGAA
Found at i:73838574 original size:26 final size:27
Alignment explanation
Indices: 73838518--73838584 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
73838508 TATCAGACAT
* * *
73838518 TGTGACAAAGTCACCAGATACAGATAT
1 TGTGGCAAAGCCACCAGATACAGATAA
*
73838545 TGTGGCAGAGCCACCAGA-ACAGATAA
1 TGTGGCAAAGCCACCAGATACAGATAA
73838571 TGTGGCAAAGCCAC
1 TGTGGCAAAGCCAC
73838585 TTAACAGAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 20 0.57
27 15 0.43
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
TGTGGCAAAGCCACCAGATACAGATAA
Found at i:73839291 original size:27 final size:27
Alignment explanation
Indices: 73839234--73839617 Score: 518
Period size: 27 Copynumber: 14.3 Consensus size: 27
73839224 GGGGCAAAAT
* * * *
73839234 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73839260 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73839287 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
73839314 GATAATTCTACCCTACAGGAATATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73839341 GATAGTTCTAACCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73839368 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73839395 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73839422 GATAATTCTACCCTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73839449 GGTAATTCTATCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
73839476 AATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73839503 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73839530 GATAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73839557 GGGAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73839584 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73839611 GGTAATT
1 GGTAATT
73839618 TTGTAAATCG
Statistics
Matches: 311, Mismatches: 46, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 14 0.05
27 297 0.95
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:73839631 original size:27 final size:27
Alignment explanation
Indices: 73839601--73839840 Score: 103
Period size: 27 Copynumber: 8.9 Consensus size: 27
73839591 CTACCTTACA
*
73839601 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
73839628 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
73839655 AGGGTACTTT-GTTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
** * * ** *
73839682 AGGGTATTTCCATAAATTTACAGGTTG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
73839709 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
73839735 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
73839762 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* ** *
73839789 AGGGGTATTTTGGTAATTTTGCAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* *
73839816 AGGGGTATTTTGGTGATTTTATAAA
1 A-GGGTATTTCGGTAATTTTATAAA
73839841 CCAATGGTAT
Statistics
Matches: 173, Mismatches: 36, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
26 4 0.02
27 169 0.98
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:73839895 original size:27 final size:27
Alignment explanation
Indices: 73839710--73839888 Score: 223
Period size: 27 Copynumber: 6.6 Consensus size: 27
73839700 TACAGGTTGA
** * **
73839710 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73839737 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73839764 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73839791 GGGTATTTTGGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
73839818 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
73839845 TGGTATTTTAGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73839872 AGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
73839889 GGTAAACTAA
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:73841233 original size:39 final size:39
Alignment explanation
Indices: 73841158--73841233 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
73841148 AACCTATTAT
* * *
73841158 TGAGTATTGTGATATATGCTTGAATGTTATGCAATTAAA
1 TGAGTATTGCGATATATGCTTGAATATTAAGCAATTAAA
* * *
73841197 TGAGTATTGCGATTTGTGCTTGAATATTAAGTAATTA
1 TGAGTATTGCGATATATGCTTGAATATTAAGCAATTA
73841234 TACATGTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTGAATATTAAGCAATTAAA
Found at i:73854824 original size:23 final size:23
Alignment explanation
Indices: 73854806--73854854 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
73854796 AAATTTGATC
73854806 AAGTTTCATAAGCTTATTTAGAA
1 AAGTTTCATAAGCTTATTTAGAA
*
73854829 AAGTTTCATAAGCTTATTTAGCA
1 AAGTTTCATAAGCTTATTTAGAA
73854852 AAG
1 AAG
73854855 GCAATGTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (23 bp):
AAGTTTCATAAGCTTATTTAGAA
Found at i:73859819 original size:27 final size:28
Alignment explanation
Indices: 73859789--73859842 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
73859779 GTCACTAGAT
**
73859789 ACAGA-AATTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCAAAGCCACCAGA
73859816 ACAGATAATTTGTGGCAAAGCCACCAG
1 ACAGATAATTTGTGGCAAAGCCACCAG
73859843 GACGCTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAAAGCCACCAGA
Found at i:73859995 original size:28 final size:28
Alignment explanation
Indices: 73859948--73860012 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
73859938 AAATTAACCC
*
73859948 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
73859976 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
73860004 TAGGGGTAT
1 TAGGGGTAT
73860013 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:73864613 original size:38 final size:37
Alignment explanation
Indices: 73864562--73864633 Score: 135
Period size: 38 Copynumber: 1.9 Consensus size: 37
73864552 CTTTTCAGCC
73864562 CTCAATGCCGATATCACATTAGACAAATAGTCCCTTCG
1 CTCAATGCCGATATCACATTAGACAAATAG-CCCTTCG
73864600 CTCAATGCCGATATCACATTAGACAAATAGCCCT
1 CTCAATGCCGATATCACATTAGACAAATAGCCCT
73864634 CAATCTGTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 4 0.12
38 30 0.88
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (37 bp):
CTCAATGCCGATATCACATTAGACAAATAGCCCTTCG
Found at i:73865243 original size:24 final size:24
Alignment explanation
Indices: 73865142--73865242 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
73865132 AAGTCTGTCA
*
73865142 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
73865166 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
73865190 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
73865214 GGAGAAGATTTAGGAACTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
73865238 GGAGA
1 GGAGA
73865243 ACAGTGTTGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.35, C:0.03, G:0.39, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:73866691 original size:27 final size:26
Alignment explanation
Indices: 73866651--73866755 Score: 138
Period size: 27 Copynumber: 3.9 Consensus size: 26
73866641 AGGAAGCGTC
*
73866651 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
73866678 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
73866705 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
73866733 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
73866756 ATTCTGGCAG
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
26 2 0.03
27 51 0.73
28 17 0.24
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:73866755 original size:54 final size:54
Alignment explanation
Indices: 73866651--73866762 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
73866641 AGGAAGCGTC
* *
73866651 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * *
73866705 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
73866759 CTGG
1 CTGG
73866763 CAGCCATGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:73870008 original size:24 final size:24
Alignment explanation
Indices: 73869964--73870011 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
73869954 TAATTCAATC
*
73869964 TAACCATATTAAGCATACATATAT
1 TAACCATATTAAACATACATATAT
*
73869988 TAACCATATTATAACCT-CATATAT
1 TAACCATATTA-AACATACATATAT
73870012 ATATGTTCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (24 bp):
TAACCATATTAAACATACATATAT
Found at i:73889124 original size:40 final size:40
Alignment explanation
Indices: 73889039--73889189 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73889029 AATTGAATGA
* * *
73889039 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73889079 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73889120 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73889159 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73889190 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73889203 original size:40 final size:40
Alignment explanation
Indices: 73889075--73889205 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
73889065 TATGCTGGAA
* * *
73889075 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
73889115 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
73889155 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
73889195 ATTATATCCGG
1 ATTATATCCGG
73889206 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:73891339 original size:44 final size:44
Alignment explanation
Indices: 73891275--73891359 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
73891265 GCATGTATCA
* * *
73891275 CATCCATTATGAACTCGGACCAACTCAACGAGTTCGGATGCTCG
1 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCG
*
73891319 CATCCATAATGAACTTGGACCAACTCAACGAGCTCAGATGC
1 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGC
73891360 CTCAAATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (44 bp):
CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCG
Found at i:73891839 original size:28 final size:28
Alignment explanation
Indices: 73891801--73891857 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
73891791 ATAAAATTAA
73891801 AAAAAAAAGAAAGATGATATCATCCCTT
1 AAAAAAAAGAAAGATGATATCATCCCTT
*
73891829 AAAAAAAAGAAGGATGATATCATCCCTT
1 AAAAAAAAGAAAGATGATATCATCCCTT
73891857 A
1 A
73891858 CTCATCTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.21
Consensus pattern (28 bp):
AAAAAAAAGAAAGATGATATCATCCCTT
Found at i:73892824 original size:46 final size:47
Alignment explanation
Indices: 73892675--73892846 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 47
73892665 TTTGTTTGTA
* * * * *
73892675 AGCCAGTGTAAGACATGTCTGGGACATGTATTAGCCAC-ATTA-TGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GACTTAG
* * * *
73892721 AGCCAGTGTAAGACCATATCTGGGACGTGGCATCAGCATTGAGAC-TAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACTTAG
* *
73892769 AGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGAGACTTA-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACTTAG
*
73892815 AGCCAGTGTAAGACATGTCTGGAACATGCATC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC
73892847 GACTACATGG
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 55 0.53
47 26 0.25
48 22 0.21
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACTTAG
Found at i:73906744 original size:66 final size:66
Alignment explanation
Indices: 73906636--73906795 Score: 178
Period size: 66 Copynumber: 2.4 Consensus size: 66
73906626 GTATTACATT
* * * * *
73906636 TGAACCCCATATGTTAGATTTGTGAGACCCTAAACTATTATTACATG-TAAAACCTATATAATGC
1 TGAACCCCATAAGTAAGATATGT-AAACCTTAAACTATTATTACATGCT-AAACCTATATAATGC
*
73906700 ATG
64 AGG
* * * * *
73906703 TGAACTCTATAAGTAAGATATGTAAACCTTAAATTATTATTACATGCTAACCCTATATATTGCAG
1 TGAACCCCATAAGTAAGATATGTAAACCTTAAACTATTATTACATGCTAAACCTATATAATGCAG
73906768 G
66 G
* *
73906769 TGAACCCCATATGTTAGATATGTAAAC
1 TGAACCCCATAAGTAAGATATGTAAAC
73906796 TTTATATGCT
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
66 58 0.75
67 19 0.25
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (66 bp):
TGAACCCCATAAGTAAGATATGTAAACCTTAAACTATTATTACATGCTAAACCTATATAATGCAG
G
Found at i:73911415 original size:14 final size:15
Alignment explanation
Indices: 73911396--73911425 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73911386 AACATGAACT
73911396 TCTA-GGGGTGGTAC
1 TCTAGGGGGTGGTAC
73911410 TCTAGGGGGTGGTAC
1 TCTAGGGGGTGGTAC
73911425 T
1 T
73911426 ATGGTGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.13, C:0.13, G:0.43, T:0.30
Consensus pattern (15 bp):
TCTAGGGGGTGGTAC
Found at i:73913794 original size:38 final size:38
Alignment explanation
Indices: 73913732--73913812 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
73913722 ACATTTCACT
* *
73913732 CTCAATCATATAAACAGTAATTCATTCGATA-ACAGTAA
1 CTCATTCATATAAACAGTAATTCA-TCCATATACAGTAA
* * *
73913770 CTCATTCATTTAAATAGTACTTCATCCATATACAGTAA
1 CTCATTCATATAAACAGTAATTCATCCATATACAGTAA
*
73913808 TTCAT
1 CTCAT
73913813 CCGTGTAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
37 5 0.14
38 31 0.86
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.35
Consensus pattern (38 bp):
CTCATTCATATAAACAGTAATTCATCCATATACAGTAA
Found at i:73913811 original size:18 final size:17
Alignment explanation
Indices: 73913744--73913814 Score: 52
Period size: 18 Copynumber: 3.9 Consensus size: 17
73913734 CAATCATATA
*
73913744 AACAGTAATTCATTCGAT
1 AACAGTAATTCA-TCCAT
* *
73913762 AACAGTAACTCATTCATTT
1 AACAGTAATTCATCCA--T
* *
73913781 AAATAGTACTTCATCCAT
1 -AACAGTAATTCATCCAT
73913799 ATACAGTAATTCATCC
1 A-ACAGTAATTCATCC
73913815 GTGTAACACA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
17 3 0.08
18 24 0.60
19 1 0.03
20 12 0.30
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (17 bp):
AACAGTAATTCATCCAT
Found at i:73913977 original size:25 final size:26
Alignment explanation
Indices: 73913949--73913999 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
73913939 CATTTCTACT
73913949 CTTTCAAGC-TAT-GATCAGTAAGCTC
1 CTTTCAAGCTTATGGA-CAGTAAGCTC
**
73913974 CTTTTGAGCTTATGGACAGTAAGCTC
1 CTTTCAAGCTTATGGACAGTAAGCTC
73914000 TATTGAGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 13 0.59
27 2 0.09
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
CTTTCAAGCTTATGGACAGTAAGCTC
Found at i:73923003 original size:2 final size:2
Alignment explanation
Indices: 73922996--73923030 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
73922986 AACATAGAGC
73922996 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73923031 AACTATTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73925006 original size:58 final size:58
Alignment explanation
Indices: 73924936--73925103 Score: 232
Period size: 58 Copynumber: 2.9 Consensus size: 58
73924926 GATTATTGTT
*
73924936 ATTAAATTTTAATAGAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
1 ATTAAATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* * * *
73924994 ATTATATTTTAATATAATTATTATTAAATACAATTT-TTAAAAAATAATATATAATTTA
1 ATTAAATTTTAATATAATTATTATTAAATATAATTTAAT-AAAAATAATAAATAATTTA
*
73925052 A-TAACATTCTTAATATAATTATTATTAAAATATAATTTAATAAAAATCATAA
1 ATTAA-ATT-TTAATATAATTATTATT-AAATATAATTTAATAAAAATAATAA
73925104 TATATAATAT
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
57 3 0.03
58 55 0.58
59 17 0.18
60 19 0.20
61 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTAAATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
Found at i:73928214 original size:28 final size:29
Alignment explanation
Indices: 73928182--73928280 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
73928172 ATAATAAGCC
*
73928182 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
73928210 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
73928238 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
73928267 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73928281 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:73936226 original size:28 final size:29
Alignment explanation
Indices: 73936194--73936292 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
73936184 ATAATAAGCC
*
73936194 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
73936222 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
73936250 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
73936279 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73936293 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:73940923 original size:71 final size:68
Alignment explanation
Indices: 73940832--73941026 Score: 248
Period size: 68 Copynumber: 2.8 Consensus size: 68
73940822 CGATTTATCT
* * * *
73940832 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGCAACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCACACATGCAACCTAGCTACATTTA
73940896 TCTCTCA
62 TCTCTCA
* **
73940903 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTACATTTATCTC
*
73940968 TCC
66 TCA
* **
73940971 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTAC
73941027 TATATAGTAT
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 87 0.76
70 2 0.02
71 26 0.23
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.32
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTACATTTATCTC
TCA
Found at i:73940965 original size:68 final size:68
Alignment explanation
Indices: 73940881--73941026 Score: 283
Period size: 68 Copynumber: 2.1 Consensus size: 68
73940871 CACTCATGCA
73940881 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
73940946 GTG
66 GTG
*
73940949 ACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
73941014 GTG
66 GTG
73941017 ACCTAGCTAC
1 ACCTAGCTAC
73941027 TATATAGTAT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.32
Consensus pattern (68 bp):
ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
GTG
Found at i:73941059 original size:68 final size:67
Alignment explanation
Indices: 73940881--73941052 Score: 249
Period size: 68 Copynumber: 2.5 Consensus size: 67
73940871 CACTCATGCA
* *
73940881 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCTC-CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
73940946 GTG
65 GTG
* *
73940949 ACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-CCGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
73941014 GTG
65 GTG
73941017 ACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTCCGTAGCTC-TCTTGT
73941053 ACACATGATG
Statistics
Matches: 98, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
67 1 0.01
68 88 0.90
69 5 0.05
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.34
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTCCGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:73945138 original size:64 final size:64
Alignment explanation
Indices: 73945058--73945229 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
73945048 AGACATTATG
* * * *
73945058 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAATAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
73945122 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73945187 AA
63 AA
* * *
73945189 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT
73945230 GTATAAGAGA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
63 9 0.10
64 25 0.29
66 21 0.24
67 30 0.34
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73948383 original size:93 final size:93
Alignment explanation
Indices: 73948275--73948446 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73948265 CGCCCATAAG
* * *
73948275 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73948340 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73948368 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73948433 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73948447 TCAACCATCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73948443 original size:46 final size:46
Alignment explanation
Indices: 73948268--73948443 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
73948258 TGTAACCCGC
* * * *
73948268 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
73948314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
73948364 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
73948407 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73948444 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:73952965 original size:79 final size:80
Alignment explanation
Indices: 73952788--73952971 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
73952778 TCGAATGATG
* * * *
73952788 TCCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCT-TGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCCAAGGCATT
*
73952852 CGTGCGAGTTAATAAA
65 CGTGCGAGTCAATAAA
* * * **
73952868 TCCAGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCAAGGCATT
1 TCCGGGCT-TGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCCAAGGCATT
*
73952930 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATA-AA
73952947 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTT-GTCCCGAAGGCATTTG
73952972 AGCGAGTCAT
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 30 0.34
79 41 0.47
80 16 0.18
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTTGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCCAAGGCATTC
GTGCGAGTCAATAAA
Found at i:73952977 original size:40 final size:40
Alignment explanation
Indices: 73952789--73952994 Score: 131
Period size: 39 Copynumber: 5.2 Consensus size: 40
73952779 CGAATGATGT
* * * * *
73952789 CCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTATAA
** * * * *
73952829 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTATAA
* * * *
73952868 TCCAGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
*
73952907 CCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
* * * *
73952947 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTCATTATAT
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
73952987 CC-GGTTAA
1 CCGGGTTAA
73952995 ATTCGAAGGT
Statistics
Matches: 132, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
38 2 0.02
39 64 0.48
40 59 0.45
41 7 0.05
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
Found at i:73959147 original size:45 final size:46
Alignment explanation
Indices: 73959083--73959257 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
73959073 TGTAACCCGC
*
73959083 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
73959128 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
73959178 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
73959221 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73959258 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:73959248 original size:93 final size:92
Alignment explanation
Indices: 73959090--73959260 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
73959080 CGCCCATAAG
*
73959090 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73959155 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
73959182 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73959247 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
73959261 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73968433 original size:40 final size:40
Alignment explanation
Indices: 73968373--73968542 Score: 209
Period size: 40 Copynumber: 4.2 Consensus size: 40
73968363 TATTCGAATG
*
73968373 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
73968413 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACT
* * * *
73968453 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
73968493 ATATCCGGGCTAAGTCCCGGAGGCATTTATGCTAGGGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
73968533 ATATCCGGGC
1 ATATCCGGGC
73968543 CATATCCGGG
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 107 0.96
41 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:73968547 original size:11 final size:11
Alignment explanation
Indices: 73968531--73968564 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
73968521 ATGCTAGGGA
73968531 CCATATCCGGG
1 CCATATCCGGG
73968542 CCATATCCGGG
1 CCATATCCGGG
73968553 CCATATCCGGG
1 CCATATCCGGG
73968564 C
1 C
73968565 TAAGACCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.18, C:0.38, G:0.26, T:0.18
Consensus pattern (11 bp):
CCATATCCGGG
Found at i:73976345 original size:40 final size:41
Alignment explanation
Indices: 73976291--73976372 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
73976281 ATTTGCATTA
73976291 AAAATTTGGCGACACTA-TTGTTTGGTGAAAAATGTTACAT
1 AAAATTTGGCGACACTATTTGTTTGGTGAAAAATGTTACAT
73976331 AAAATTTGGCGACACTATTTGTTTGGTGAAAAATGTTACAT
1 AAAATTTGGCGACACTATTTGTTTGGTGAAAAATGTTACAT
73976372 A
1 A
73976373 TACACTGATC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 17 0.41
41 24 0.59
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (41 bp):
AAAATTTGGCGACACTATTTGTTTGGTGAAAAATGTTACAT
Found at i:73979215 original size:93 final size:93
Alignment explanation
Indices: 73979105--73979276 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73979095 CGCCCATAAG
* * * *
73979105 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73979170 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73979198 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73979263 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73979277 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73979273 original size:46 final size:46
Alignment explanation
Indices: 73979098--73979273 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73979088 TGTAACCCGC
* * * *
73979098 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73979144 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
73979194 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73979237 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73979274 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73979292 original size:46 final size:46
Alignment explanation
Indices: 73979147--73979285 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
73979137 TTCGCATCCA
73979147 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * * *
73979195 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
73979240 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
73979286 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 27 0.37
47 29 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:73980786 original size:40 final size:39
Alignment explanation
Indices: 73980741--73980948 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
73980731 CGGAATACAA
* *
73980741 CCGGATATAACCACATGCACGAATGACTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73980781 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73980821 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
73980861 CTGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
73980901 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73980941 CCGGATAT
1 CCGGATAT
73980949 CATTCAATTG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73980881 original size:80 final size:80
Alignment explanation
Indices: 73980741--73980947 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 80
73980731 CGGAATACAA
* *
73980741 CCGGATATAACCACATGCACGAATGACTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGACTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
73980806 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * * * *
73980821 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCTGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGACTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
*
73980884 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** ** * *
73980901 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGACTTCGGGTCTTAGCCCGGATA
73980948 TCATTCAATT
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 3 0.03
80 101 0.96
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGACTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:73988916 original size:40 final size:39
Alignment explanation
Indices: 73988871--73989078 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
73988861 CGGAATACAA
*
73988871 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73988911 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73988951 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73988991 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
73989031 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73989071 CCGGATAT
1 CCGGATAT
73989079 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73989011 original size:80 final size:81
Alignment explanation
Indices: 73988871--73989076 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
73988861 CGGAATACAA
* * *
73988871 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
73988935 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
73988951 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
73989014 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
73989031 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
73989077 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:73991943 original size:40 final size:38
Alignment explanation
Indices: 73991893--73992000 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
73991883 ATCACGATTT
*
73991893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
73991933 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
73991973 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
73992001 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Done.