Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 251 of 345
Found at i:73994633 original size:17 final size:18
Alignment explanation
Indices: 73994597--73994633 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73994587 TATCTGGACT
73994597 TTTATCCAACACATATAA
1 TTTATCCAACACATATAA
*
73994615 TTTATCCAACCCA-ATAA
1 TTTATCCAACACATATAA
73994632 TT
1 TT
73994634 ATTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (18 bp):
TTTATCCAACACATATAA
Found at i:73996994 original size:94 final size:93
Alignment explanation
Indices: 73996830--73997141 Score: 321
Period size: 94 Copynumber: 3.3 Consensus size: 93
73996820 GAGGGTGAGT
* * * *
73996830 TGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCCATGTCCC
* * *
73996895 GGACATGGTCTTACACTAGCTCTCATCTCAA
64 AGACATGGTCTTACACTAGCTCACA-ATCAA
* * * *
73996926 TGCCGAGGCCATGTCCAACATGGTCTTACACTGGCTCTCATATGGTGGTCGACGCCATGTCCCAG
1 TGCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCCATGTCCCAG
*
73996991 ACATGGTCTTACACTGGCTCACAATCAA
66 ACATGGTCTTACACTAGCTCACAATCAA
* * * * * * * *
73997019 CGCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACA-GTCAATGCTGATGCCATGT-CTA-
1 TGCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCCATGTCCCAG
*
73997081 ACATGGTCTTACACTGGCAT-ACAA--AA
66 ACATGGTCTTACACTAGC-TCACAATCAA
*
73997107 TGTGGCTGATGCCATGTCCAACATGGTCTTACACT
1 --T-GCCGATGCCATGTCCAACATGGTCTTACACT
73997142 AGTTCACATG
Statistics
Matches: 186, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
88 2 0.01
90 22 0.12
91 33 0.18
92 11 0.06
93 41 0.22
94 61 0.33
95 3 0.02
96 13 0.07
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (93 bp):
TGCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCCATGTCCCAG
ACATGGTCTTACACTAGCTCACAATCAA
Found at i:73997055 original size:45 final size:46
Alignment explanation
Indices: 73996831--73997150 Score: 288
Period size: 48 Copynumber: 6.9 Consensus size: 46
73996821 AGGGTGAGTT
* * * * *
73996831 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATGTCGAG
1 GCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATATCAAG
* * * * *
73996879 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGT-CC-AACATGGTCTTACACTGGCTCACATATCAAG
* * ***
73996927 GCCGAGGCCATGTCCAACATGGTCTTACACTGGCTCTCATATGGTG
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACATATCAAG
* * *
73996973 GTCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-ATCAAC
1 GCCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATATCAAG
* *
73997020 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACA-GTCAAT
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACATATCAAG
* * * **
73997065 GCTGATGCCATGTCTAACATGGTCTTACACTGGCAT-ACAAAAT-GTG
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGC-TCAC-ATATCAAG
* * *
73997111 GCTGATGCCATGTCCAACATGGTCTTACACTAGTTCACAT
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACAT
73997151 GTCACCCCAA
Statistics
Matches: 231, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
45 63 0.27
46 73 0.32
47 19 0.08
48 76 0.33
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCACATATCAAG
Found at i:73997130 original size:46 final size:45
Alignment explanation
Indices: 73996933--73997141 Score: 217
Period size: 45 Copynumber: 4.6 Consensus size: 45
73996923 CAATGCCGAG
* * * *
73996933 GCCATGTCCAACATGGTCTTACACTGGCTCTCATATGGTGG-TCGAC
1 GCCATGTCCAACATGGTCTTACACTGGCTC-AAAATCGTGGCT-GAT
* *** *
73996979 GCCATGTCCCAGACATGGTCTTACACTGGCTCACAATCAACGCCGAT
1 GCCATGT-CCA-ACATGGTCTTACACTGGCTCAAAATCGTGGCTGAT
* * *
73997026 GCCATGTCCAACATGGTCTTACACTGGCTCACAGTCAAT-GCTGAT
1 GCCATGTCCAACATGGTCTTACACTGGCTCAAAATC-GTGGCTGAT
*
73997071 GCCATGTCTAACATGGTCTTACACTGGCATACAAAAT-GTGGCTGAT
1 GCCATGTCCAACATGGTCTTACACTGGC-T-CAAAATCGTGGCTGAT
73997117 GCCATGTCCAACATGGTCTTACACT
1 GCCATGTCCAACATGGTCTTACACT
73997142 AGTTCACATG
Statistics
Matches: 139, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
45 58 0.42
46 42 0.30
47 19 0.14
48 20 0.14
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
GCCATGTCCAACATGGTCTTACACTGGCTCAAAATCGTGGCTGAT
Found at i:73999115 original size:94 final size:94
Alignment explanation
Indices: 73998967--73999218 Score: 468
Period size: 94 Copynumber: 2.7 Consensus size: 94
73998957 ATTCAAATCT
73998967 GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTACTTCGAATAGCATATAA
1 GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTACTTCGAATAGCATATAA
73999032 AATCTGCACACAAAGTGACATTTAATTCC
66 AATCTGCACACAAAGTGACATTTAATTCC
*
73999061 GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTAACTTACTTCGAATAGCATATAA
1 GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTACTTCGAATAGCATATAA
73999126 AATCTGCACACAAAGTGACATTTAATTCC
66 AATCTGCACACAAAGTGACATTTAATTCC
* * *
73999155 GCACACATAGTGCCAATGTTGACTCATTATAATAAGGCAATTTACTTAATTCGATTAGCATATA
1 GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTACTTCGAATAGCATATA
73999219 TGGTTATAGT
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 153 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.30
Consensus pattern (94 bp):
GCACACATAGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTACTTCGAATAGCATATAA
AATCTGCACACAAAGTGACATTTAATTCC
Found at i:74011892 original size:58 final size:58
Alignment explanation
Indices: 74011802--74011912 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
74011792 TATTTCAAGT
* * *
74011802 ATAATTTATGCTCGAGAGGACTTATATCAGGATTA-CTCGTCCGGGCTAAATCCAATCC
1 ATAATATATGCTCAAGAGGACTTATATCAGGATTACCT-GTCCAGGCTAAATCCAATCC
*
74011860 ATAATATATGCTCAAGAGGACTTATATCAGGATTACCTGTCTAGGCTAAATCC
1 ATAATATATGCTCAAGAGGACTTATATCAGGATTACCTGTCCAGGCTAAATCC
74011913 TATCAGAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
58 46 0.96
59 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (58 bp):
ATAATATATGCTCAAGAGGACTTATATCAGGATTACCTGTCCAGGCTAAATCCAATCC
Found at i:74026455 original size:10 final size:10
Alignment explanation
Indices: 74026440--74026472 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
74026430 AAATAATAAA
74026440 TCATTTCAAT
1 TCATTTCAAT
74026450 TCATTTCAAT
1 TCATTTCAAT
*
74026460 T-ATTCCAAT
1 TCATTTCAAT
74026469 TCAT
1 TCAT
74026473 ATCTACTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.48
Consensus pattern (10 bp):
TCATTTCAAT
Found at i:74038207 original size:45 final size:45
Alignment explanation
Indices: 74038129--74038214 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
74038119 CATATAACCC
* * * * *
74038129 TTATGTTGATATGGGTATTGGGTTATAAGACCCTTACGTGGGCTA
1 TTATGTTGATATGGGTATTAGGTCACAAAACCCTCACGTGGGCTA
74038174 TTATGTTGATATGGGTATTAGGTCACAAAACCCTCACGTGG
1 TTATGTTGATATGGGTATTAGGTCACAAAACCCTCACGTGG
74038215 TCCTTACTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (45 bp):
TTATGTTGATATGGGTATTAGGTCACAAAACCCTCACGTGGGCTA
Found at i:74038254 original size:27 final size:27
Alignment explanation
Indices: 74038224--74038282 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
74038214 GTCCTTACTA
* *
74038224 GGCCAAATGATGCAGGCCTAAGTTTTG
1 GGCCAAATGATGCAGGCCAAAGGTTTG
* **
74038251 GGCCAAATGGTGTTGGCCAAAGGTTTG
1 GGCCAAATGATGCAGGCCAAAGGTTTG
74038278 GGCCA
1 GGCCA
74038283 TATACGCCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.24
Consensus pattern (27 bp):
GGCCAAATGATGCAGGCCAAAGGTTTG
Found at i:74039937 original size:40 final size:40
Alignment explanation
Indices: 74039892--74040057 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74039882 CGGAATATAA
74039892 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74039932 CCGGATAGAATAACTCGCACGAATGCCTT--GGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74039970 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74040010 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74040049 CCGGATATA
1 CCGGATATA
74040058 TTCAATTTCT
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 31 0.30
39 15 0.14
40 58 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74049225 original size:28 final size:27
Alignment explanation
Indices: 74049162--74049231 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74049152 ATAGTGAGTC
74049162 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74049189 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74049217 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74049232 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74057161 original size:28 final size:27
Alignment explanation
Indices: 74057098--74057167 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
74057088 ATAGTGAGTC
74057098 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74057125 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74057153 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74057168 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74060010 original size:40 final size:40
Alignment explanation
Indices: 74059955--74060122 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
74059945 TGAATGATAC
* *
74059955 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
74059995 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
74060035 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
74060075 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
74060115 CC-GGCTAA
1 CCGGGCTAA
74060123 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:74062626 original size:38 final size:38
Alignment explanation
Indices: 74062567--74062728 Score: 162
Period size: 38 Copynumber: 4.0 Consensus size: 38
74062557 TTACAAATTA
* * *
74062567 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
* *
74062605 ACATGTTTAACCGTGTTATATCCACTTAGCACCACATTAATT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCAC----GTT
* * *
74062647 AATCAATATATGTAACCGTGGCATATCCACTTAGCACTACGTT
1 -A-C-ATGT-T-TAACCGTGGTATATCCACTTAGCACCACGTT
*
74062690 ACATGTTTAACCGTGGTATATCCACTTAGTACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
74062728 A
1 A
74062729 ATGAATCAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
38 60 0.59
39 1 0.01
40 3 0.03
41 1 0.01
42 3 0.03
43 3 0.03
44 1 0.01
45 3 0.03
46 1 0.01
47 25 0.25
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (38 bp):
ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:74062672 original size:85 final size:85
Alignment explanation
Indices: 74062543--74062875 Score: 436
Period size: 85 Copynumber: 3.8 Consensus size: 85
74062533 ATGGCATACG
* * * * *
74062543 CACTTAGCACCACGTTACA--AATTAACATGTATAACCATGGCATATCCACTTAGCACCACGTTA
1 CACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTA
*
74062606 CATGTTTAACCGTGTTATATC
65 CATGTTTAACCGTGGTATATC
* * *
74062627 CACTTAGCACCACATTAATTAATCAATATATGTAACCGTGGCATATCCACTTAGCACTACGTTAC
1 CACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
74062692 ATGTTTAACCGTGGTATATC
66 ATGTTTAACCGTGGTATATC
* *
74062712 CACTTAGTACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCGCGTTAC
1 CACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
**
74062777 ATGTATCAATATGTGTAATTGTGGTATATC
66 ATG--------T-T-TAACCGTGGTATATC
74062807 CACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
1 CACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
74062872 ATGT
66 ATGT
74062876 ATCAATATGT
Statistics
Matches: 220, Mismatches: 17, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
83 1 0.00
84 16 0.07
85 121 0.55
87 1 0.00
93 1 0.00
94 1 0.00
95 79 0.36
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
CACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
ATGTTTAACCGTGGTATATC
Found at i:74062681 original size:47 final size:46
Alignment explanation
Indices: 74062612--74062914 Score: 343
Period size: 47 Copynumber: 6.6 Consensus size: 46
74062602 GTTACATGTT
* *
74062612 TAACCGTGTTATATCCACTTAGCACCACATTAATTAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATT-ATCAATATATG
* * *
74062659 TAACCGTGGCATATCCACTTAGCACTACG----TTA-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATTATCAATATATG
* *
74062697 TAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAAT-TATCAATATATG
* * *
74062744 TAACCGTGGCATATCCACTTAGCACCGCGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-AT-TATCAATATATG
** *
74062792 TAATTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAAT-TATCAATATATG
* *
74062839 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-AT-TATCAATATATG
*
74062887 TAATCGTGGTATATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
74062915 ATTTTTCCAT
Statistics
Matches: 217, Mismatches: 28, Indels: 21
0.82 0.11 0.08
Matches are distributed among these distances:
38 26 0.12
39 1 0.00
40 3 0.01
41 1 0.00
42 2 0.01
43 3 0.01
44 1 0.00
45 3 0.01
46 1 0.00
47 96 0.44
48 80 0.37
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (46 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATTATCAATATATG
Found at i:74062806 original size:48 final size:47
Alignment explanation
Indices: 74062697--74062914 Score: 319
Period size: 48 Copynumber: 4.6 Consensus size: 47
74062687 GTTACATGTT
*
74062697 TAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
74062744 TAACCGTGGCATATCCACTTAGCACCGCGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
**
74062792 TAATTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
74062839 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
74062887 TAATCGTGGTATATCCACTTAGCACCAC
1 TAACCGTGGTATATCCACTTAGCACCAC
74062915 ATTTTTCCAT
Statistics
Matches: 151, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
47 71 0.47
48 80 0.53
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:74062870 original size:95 final size:95
Alignment explanation
Indices: 74062692--74062914 Score: 401
Period size: 95 Copynumber: 2.3 Consensus size: 95
74062682 ACTACGTTAC
* * *
74062692 ATGTTTAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATA
*
74062757 TCCACTTAGCACCGCGTTACATGTATCAAT
66 TCCACTTAGCACCACGTTACATGTATCAAT
*
74062787 ATGTGTAATTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATA
74062852 TCCACTTAGCACCACGTTACATGTATCAAT
66 TCCACTTAGCACCACGTTACATGTATCAAT
74062882 ATGTGTAATCGTGGTATATCCACTTAGCACCAC
1 ATGTGTAATCGTGGTATATCCACTTAGCACCAC
74062915 ATTTTTCCAT
Statistics
Matches: 122, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 122 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (95 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATA
TCCACTTAGCACCACGTTACATGTATCAAT
Found at i:74063490 original size:28 final size:28
Alignment explanation
Indices: 74063459--74063515 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
74063449 AGAAAGGGAC
74063459 ACATTTGGGGTTTAAAATTTGTCCTTTA
1 ACATTTGGGGTTTAAAATTTGTCCTTTA
*
74063487 ACATTTGGGGTTTAAAATTTGTCTTTTA
1 ACATTTGGGGTTTAAAATTTGTCCTTTA
74063515 A
1 A
74063516 TTTATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (28 bp):
ACATTTGGGGTTTAAAATTTGTCCTTTA
Found at i:74064348 original size:19 final size:19
Alignment explanation
Indices: 74064324--74064363 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
74064314 TAAGCAATAA
*
74064324 TCAATCATTTCAATTCATT
1 TCAATCATTCCAATTCATT
74064343 TCAATCATTCCAATTCATT
1 TCAATCATTCCAATTCATT
74064362 TC
1 TC
74064364 TACTAGTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45
Consensus pattern (19 bp):
TCAATCATTCCAATTCATT
Found at i:74064350 original size:9 final size:10
Alignment explanation
Indices: 74064324--74064363 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
74064314 TAAGCAATAA
74064324 TCAA-TCATT
1 TCAATTCATT
74064333 TCAATTCATT
1 TCAATTCATT
74064343 TCAA-TCATT
1 TCAATTCATT
*
74064352 CCAATTCATT
1 TCAATTCATT
74064362 TC
1 TC
74064364 TACTAGTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 12 0.44
10 15 0.56
ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45
Consensus pattern (10 bp):
TCAATTCATT
Found at i:74066617 original size:18 final size:19
Alignment explanation
Indices: 74066568--74066637 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 19
74066558 TTTCTGTATA
*
74066568 TTTTATAATTTTT--TATGT
1 TTTTATAATTTTTACAAT-T
*
74066586 TTTTATAAAATTTTACAATT
1 TTTTAT-AATTTTTACAATT
*
74066606 TTTTAT-ATTTTTACGATT
1 TTTTATAATTTTTACAATT
*
74066624 TTTTCTAATTTTTA
1 TTTTATAATTTTTA
74066638 ATATTTGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
18 21 0.49
19 13 0.30
20 7 0.16
21 2 0.05
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTATAATTTTTACAATT
Found at i:74068109 original size:59 final size:59
Alignment explanation
Indices: 74068028--74068152 Score: 180
Period size: 59 Copynumber: 2.1 Consensus size: 59
74068018 TTTTAATAAG
* * * *
74068028 ATTATTATTAAATATAATTTAATAATAAATAATAAATAATTTAGTCATATT-TTAACATA
1 ATTATTATTAAATACAATTTAATAA-AAATAATAAATAATTTAATAACATTCTTAACATA
* *
74068087 ATTATTATTAAATACAATTTAATAAAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAAATAATAAATAATTTAATAACATTCTTAACATA
74068146 ATTATTA
1 ATTATTA
74068153 ATAATATTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 21 0.36
59 38 0.64
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTATTATTAAATACAATTTAATAAAAATAATAAATAATTTAATAACATTCTTAACATA
Found at i:74068163 original size:34 final size:36
Alignment explanation
Indices: 74068115--74068181 Score: 95
Period size: 34 Copynumber: 1.9 Consensus size: 36
74068105 TTAATAAAAA
*
74068115 TAATATATAATTTAATAA-CATTCTTAATATAATTAT
1 TAATATATAATTTAATAATAATT-TTAATATAATTAT
74068151 TAATA-AT-ATTTAATAATAATTTTAATATAAT
1 TAATATATAATTTAATAATAATTTTAATATAAT
74068182 AATATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 19 0.66
35 5 0.17
36 5 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (36 bp):
TAATATATAATTTAATAATAATTTTAATATAATTAT
Found at i:74076804 original size:26 final size:25
Alignment explanation
Indices: 74076754--74076815 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
74076744 TTATTAATAA
74076754 AATAAAAATATTATGATTAAATTATT
1 AATAAAAATATTATGATTAAATTA-T
*
74076780 AATAAAAAT-TTATAAGA-TAATTTAT
1 AATAAAAATATTAT--GATTAAATTAT
*
74076805 AATTAAAATAT
1 AATAAAAATAT
74076816 ATTAAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 13 0.42
26 16 0.52
27 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (25 bp):
AATAAAAATATTATGATTAAATTAT
Found at i:74077717 original size:6 final size:6
Alignment explanation
Indices: 74077706--74077816 Score: 84
Period size: 6 Copynumber: 17.8 Consensus size: 6
74077696 TATCAAAACT
* *
74077706 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
74077755 AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
74077805 AAAAATC AGAAT
1 -AGAATC AGAAT
74077817 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
5 5 0.06
6 62 0.75
7 13 0.16
8 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:74077742 original size:31 final size:31
Alignment explanation
Indices: 74077706--74077816 Score: 168
Period size: 31 Copynumber: 3.5 Consensus size: 31
74077696 TATCAAAACT
* * * *
74077706 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
74077737 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
74077768 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
74077799 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
74077817 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
31 64 0.85
32 11 0.15
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:74077772 original size:19 final size:19
Alignment explanation
Indices: 74077748--74077805 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
74077738 GAATCAGAAT
74077748 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
74077767 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
74077779 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
74077798 CAGAATCA
1 CAGAATCA
74077806 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:74077995 original size:27 final size:26
Alignment explanation
Indices: 74077953--74078054 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
74077943 GCTCAGTTAT
* *
74077953 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
74077980 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
74078006 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
74078034 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74078055 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:74078241 original size:22 final size:22
Alignment explanation
Indices: 74078213--74078277 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74078203 GCAAATACGT
*
74078213 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
74078235 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
74078257 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74078278 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74078762 original size:27 final size:27
Alignment explanation
Indices: 74078722--74079246 Score: 744
Period size: 27 Copynumber: 19.4 Consensus size: 27
74078712 TACCCCACAA
* *
74078722 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
74078749 GATATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74078776 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74078803 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74078830 GGTATTTCAGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74078857 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
74078884 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
74078911 GGTATTTCGGTAATTTTACCTTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74078938 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74078965 GGTATTTCGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74078992 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74079019 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
74079046 GGTATTCCGGTAATTCTTCCCTATAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74079073 GGTATTCCGGTAATTTTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
74079100 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74079127 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
74079154 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
74079181 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74079208 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
74079235 GGTATTCCGGTA
1 GGTATTTCGGTA
74079247 GAATATTCCG
Statistics
Matches: 442, Mismatches: 56, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 442 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:74079265 original size:40 final size:40
Alignment explanation
Indices: 74079210--74079286 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
74079200 CCTACAGGGG
74079210 TATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAGAA
1 TATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAGAA
74079250 TATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTA
1 TATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTA
74079287 ATTCTACCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (40 bp):
TATTCCGGTAATTCTACCCTACAGGGGTATTCCGGTAGAA
Found at i:74079288 original size:27 final size:27
Alignment explanation
Indices: 74079250--74079451 Score: 341
Period size: 27 Copynumber: 7.5 Consensus size: 27
74079240 TCCGGTAGAA
74079250 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
74079277 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
* *
74079304 TATTTCGATAATTCTACCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
74079331 TATTCCGGTAATTCTACCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
* *
74079358 TATTTCGGTAATTCTACCCTACAAGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
*
74079385 TATTCCAGTAATTCTACCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
* *
74079412 TATTTCGGTAATTCTATCCTACAGGGG
1 TATTCCGGTAATTCTACCCTACAGGGG
74079439 TATTCCGGTAATT
1 TATTCCGGTAATT
74079452 TTACAAACCA
Statistics
Matches: 162, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
TATTCCGGTAATTCTACCCTACAGGGG
Found at i:74079567 original size:27 final size:27
Alignment explanation
Indices: 74079406--74079560 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 27
74079396 TTCTACCCTA
* * **
74079406 CAGGGGTATTTCGGTAATTCTATCCTA-
1 CAGGGGTATTTTGGTAATTTTAT-AAAC
** *
74079433 CAGGGGTATTCCGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
74079460 CAGGGGTATTTTGTTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* * *
74079487 CAAGGGTATTTTGGTGATTTCATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* ** *
74079514 CAAGGGTATTTTAATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
74079541 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
74079561 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 105 0.99
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:74081890 original size:16 final size:16
Alignment explanation
Indices: 74081869--74081918 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
74081859 TAAAAGTATT
*
74081869 AAAAGAAAAAGATAAG
1 AAAAGAAAAAAATAAG
74081885 AAAAGAAAAAAATAA-
1 AAAAGAAAAAAATAAG
* *
74081900 TAAATAAAAAAA-AAG
1 AAAAGAAAAAAATAAG
74081915 AAAA
1 AAAA
74081919 AATTTTACCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 2 0.07
15 13 0.45
16 14 0.48
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (16 bp):
AAAAGAAAAAAATAAG
Found at i:74082666 original size:6 final size:6
Alignment explanation
Indices: 74082643--74082691 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
74082633 AATGCATTAG
* * *
74082643 TATTGT TATCTT TATTTT TGTTTT TA--TT T-TTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
74082688 TATT
1 TATT
74082692 GTCGTCATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
4 3 0.09
5 3 0.09
6 29 0.83
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:74082675 original size:15 final size:15
Alignment explanation
Indices: 74082657--74082693 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
74082647 GTTATCTTTA
74082657 TTTTTGTTTTTATTT
1 TTTTTGTTTTTATTT
*
74082672 TTTTTATTTTTATTT
1 TTTTTGTTTTTATTT
*
74082687 TTATTGT
1 TTTTTGT
74082694 CGTCATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.05, T:0.84
Consensus pattern (15 bp):
TTTTTGTTTTTATTT
Found at i:74082711 original size:3 final size:3
Alignment explanation
Indices: 74082698--74082729 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
74082688 TATTGTCGTC
*
74082698 ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74082730 GATGTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:74083036 original size:24 final size:24
Alignment explanation
Indices: 74082996--74083042 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
74082986 AATATTATAT
74082996 TATATATATCTATATAT-TTTTCG
1 TATATATATCTATATATGTTTTCG
*
74083019 TATATATTATGTATATATGTTTTC
1 TATATA-TATCTATATATGTTTTC
74083043 AATATTGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 10 0.48
25 5 0.24
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATATATATCTATATATGTTTTCG
Found at i:74083090 original size:22 final size:21
Alignment explanation
Indices: 74083062--74083137 Score: 57
Period size: 22 Copynumber: 3.4 Consensus size: 21
74083052 TTTTATATAT
74083062 ATTATTATGTATATATTTTAAC
1 ATTATTATGTATAT-TTTTAAC
74083084 ATTATTA-GTTATACATCTTTTACAC
1 ATTATTATG-TAT--AT-TTTTA-AC
*
74083109 TATT-TTATGTATATTTCTAAC
1 -ATTATTATGTATATTTTTAAC
*
74083130 ATCATTAT
1 ATTATTAT
74083138 TATTTATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
20 2 0.05
21 7 0.16
22 14 0.32
23 2 0.05
24 7 0.16
25 8 0.18
26 4 0.09
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.53
Consensus pattern (21 bp):
ATTATTATGTATATTTTTAAC
Found at i:74083222 original size:11 final size:11
Alignment explanation
Indices: 74083206--74083238 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
74083196 ATCATTTCTA
74083206 ATATATATATT
1 ATATATATATT
74083217 ATATATATATT
1 ATATATATATT
74083228 -T-TATATATT
1 ATATATATATT
74083237 AT
1 AT
74083239 GTATGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.38
10 2 0.10
11 11 0.52
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
ATATATATATT
Found at i:74083224 original size:13 final size:13
Alignment explanation
Indices: 74083206--74083235 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74083196 ATCATTTCTA
74083206 ATATATATATTAT
1 ATATATATATTAT
*
74083219 ATATATATTTTAT
1 ATATATATATTAT
74083232 ATAT
1 ATAT
74083236 TATGTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATATATATTAT
Found at i:74083234 original size:20 final size:20
Alignment explanation
Indices: 74083209--74083250 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
74083199 ATTTCTAATA
74083209 TATATATTATATATATATTT
1 TATATATTATATATATATTT
* *
74083229 TATATATTATGTATGTATTT
1 TATATATTATATATATATTT
74083249 TA
1 TA
74083251 ATGTTATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
TATATATTATATATATATTT
Found at i:74083296 original size:25 final size:25
Alignment explanation
Indices: 74083268--74083320 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 25
74083258 TAGTTACATA
74083268 TATTTTTTATA-CTAT-TTCATGTATG
1 TATTTTTTATATC-ATCTT-ATGTATG
74083293 TATTTTTTATATCATCTTATGTATG
1 TATTTTTTATATCATCTTATGTATG
74083318 TAT
1 TAT
74083321 ACAAATACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 23 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.60
Consensus pattern (25 bp):
TATTTTTTATATCATCTTATGTATG
Found at i:74084864 original size:30 final size:30
Alignment explanation
Indices: 74084830--74084889 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74084820 ACTTAACAAG
*
74084830 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
74084860 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
74084890 TAAAAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:74093279 original size:13 final size:13
Alignment explanation
Indices: 74093261--74093288 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74093251 AATGAATGCT
74093261 TAGTAACCTCGTA
1 TAGTAACCTCGTA
74093274 TAGTAACCTCGTA
1 TAGTAACCTCGTA
74093287 TA
1 TA
74093289 AACTTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (13 bp):
TAGTAACCTCGTA
Found at i:74094096 original size:63 final size:62
Alignment explanation
Indices: 74094006--74094177 Score: 186
Period size: 63 Copynumber: 2.8 Consensus size: 62
74093996 GTACATCATT
* * *
74094006 AACAGAAGCTCGAA-AGCTGAACAGAAGCTCATAAGAGCTAGACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCGAAGAGCTGAACGGAAGCTCATAAGAGATAGACAGAAACCCATAAGAGTTG
* * * *
74094067 AACAAAAGCTCGTAAGAGCTGAATGGAAGCTCATAAGAGAT-GAATAGAAACTCATAAGAGTTG
1 AACAGAAGCTCG-AAGAGCTGAACGGAAGCTCATAAGAGATAG-ACAGAAACCCATAAGAGTTG
* * * * * * *
74094130 AATAGAAGCTCAAAGAGCTAAACGGAAACTCATATGAGTTAAACAGAA
1 AACAGAAGCTCGAAGAGCTGAACGGAAGCTCATAAGAGATAGACAGAA
74094178 GCTCGTAAGA
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
61 11 0.12
62 31 0.34
63 48 0.53
ACGTcount: A:0.45, C:0.16, G:0.23, T:0.16
Consensus pattern (62 bp):
AACAGAAGCTCGAAGAGCTGAACGGAAGCTCATAAGAGATAGACAGAAACCCATAAGAGTTG
Found at i:74094102 original size:42 final size:42
Alignment explanation
Indices: 74094023--74094188 Score: 131
Period size: 42 Copynumber: 4.0 Consensus size: 42
74094013 GCTCGAAAGC
* * * * * *
74094023 TGAACAGAAGCTCATAAGAGCT-AGACAGAAACCCATAAGGGT
1 TGAACAGAAACTCATAAGAGCTGA-ATAGAAGCTCATAAGAGA
* *
74094065 TGAACA-AAAGCTCGTAAGAGCTGAATGGAAGCTCATAAGAGA
1 TGAACAGAAA-CTCATAAGAGCTGAATAGAAGCTCATAAGAGA
* * *
74094107 TGAATAGAAACTCATAAGAGTTGAATAGAAGCTCA-AAGAGC
1 TGAACAGAAACTCATAAGAGCTGAATAGAAGCTCATAAGAGA
* * * * * * *
74094148 TAAACGGAAACTCATATGAGTTAAACAGAAGCTCGTAAGAG
1 TGAACAGAAACTCATAAGAGCTGAATAGAAGCTCATAAGAG
74094189 CTTAACAAAA
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 35 0.35
42 61 0.61
43 4 0.04
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.17
Consensus pattern (42 bp):
TGAACAGAAACTCATAAGAGCTGAATAGAAGCTCATAAGAGA
Found at i:74094158 original size:41 final size:41
Alignment explanation
Indices: 74094079--74094195 Score: 117
Period size: 41 Copynumber: 2.8 Consensus size: 41
74094069 CAAAAGCTCG
* * * * *
74094079 TAAGAGCTGAATGGAAGCTCATAAGAGATGAATAGAAACTCA
1 TAAGAGTTGAATAGAAGCTCA-AAGAGCTAAACAGAAACTCA
*
74094121 TAAGAGTTGAATAGAAGCTCAAAGAGCTAAACGGAAACTCA
1 TAAGAGTTGAATAGAAGCTCAAAGAGCTAAACAGAAACTCA
* * * * *
74094162 TATGAGTTAAACAGAAGCTCGTAAGAGCTTAACA
1 TAAGAGTTGAATAGAAGCTC-AAAGAGCTAAACA
74094196 AAAAGTAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
41 33 0.53
42 29 0.47
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (41 bp):
TAAGAGTTGAATAGAAGCTCAAAGAGCTAAACAGAAACTCA
Found at i:74094195 original size:21 final size:21
Alignment explanation
Indices: 74094004--74094195 Score: 119
Period size: 21 Copynumber: 9.3 Consensus size: 21
74093994 GAGTACATCA
*
74094004 TTAACAGAAGCTC-GAA-AGC
1 TTAACAGAAGCTCATAAGAGC
*
74094023 TGAACAGAAGCTCATAAGAGC
1 TTAACAGAAGCTCATAAGAGC
* * *
74094044 -TAGACAGAAACCCATAAG-GG
1 TTA-ACAGAAGCTCATAAGAGC
* *
74094064 TTGAACAAAAGCTCGTAAGAGC
1 TT-AACAGAAGCTCATAAGAGC
* ** *
74094086 TGAATGGAAGCTCATAAGAGA
1 TTAACAGAAGCTCATAAGAGC
* * *
74094107 TGAATAGAAACTCATAAGAG-
1 TTAACAGAAGCTCATAAGAGC
*
74094127 TTGAATAGAAGCTCA-AAGAGC
1 TT-AACAGAAGCTCATAAGAGC
* * * *
74094148 TAAACGGAAACTCATATGAG-
1 TTAACAGAAGCTCATAAGAGC
*
74094168 TTAAACAGAAGCTCGTAAGAGC
1 TT-AACAGAAGCTCATAAGAGC
74094190 TTAACA
1 TTAACA
74094196 AAAAGTAAAA
Statistics
Matches: 131, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
19 12 0.09
20 20 0.15
21 94 0.72
22 5 0.04
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (21 bp):
TTAACAGAAGCTCATAAGAGC
Found at i:74094393 original size:2 final size:2
Alignment explanation
Indices: 74094388--74094415 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74094378 GAACACACAC
74094388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74094416 TACCAATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74106036 original size:8 final size:8
Alignment explanation
Indices: 74106023--74106059 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
74106013 GCCGAATATG
74106023 TATATCTA
1 TATATCTA
74106031 TATATCTA
1 TATATCTA
74106039 TATATCTA
1 TATATCTA
*
74106047 TATATATA
1 TATATCTA
74106055 TATAT
1 TATAT
74106060 ATATCAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (8 bp):
TATATCTA
Found at i:74106042 original size:2 final size:2
Alignment explanation
Indices: 74106018--74106063 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
74106008 TGATGGCCGA
* * * *
74106018 AT AT GT AT AT CT AT AT AT CT AT AT AT CT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74106060 AT AT
1 AT AT
74106064 CAACTATACT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74106044 original size:16 final size:16
Alignment explanation
Indices: 74106018--74106059 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
74106008 TGATGGCCGA
*
74106018 ATATGTATATCTATAT
1 ATATATATATCTATAT
*
74106034 ATCTATATATCTATAT
1 ATATATATATCTATAT
74106050 ATATATATAT
1 ATATATATAT
74106060 ATATCAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.50
Consensus pattern (16 bp):
ATATATATATCTATAT
Found at i:74108935 original size:20 final size:20
Alignment explanation
Indices: 74108912--74108949 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74108902 CACATCCAAA
*
74108912 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
74108932 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
74108950 GCGAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:74116824 original size:20 final size:20
Alignment explanation
Indices: 74116801--74116838 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74116791 CATATCCAAA
*
74116801 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
74116821 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
74116839 GCGAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:74119385 original size:22 final size:22
Alignment explanation
Indices: 74119358--74119407 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
74119348 AGTGAACCGT
*
74119358 TTTAGTATTT-TTAGGTTTTTAG
1 TTTAGT-TTTATTAGCTTTTTAG
**
74119380 TTTAGTTTTATTTTCTTTTTAG
1 TTTAGTTTTATTAGCTTTTTAG
74119402 TTTAGT
1 TTTAGT
74119408 CCTTTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.68
Consensus pattern (22 bp):
TTTAGTTTTATTAGCTTTTTAG
Found at i:74121250 original size:50 final size:50
Alignment explanation
Indices: 74121175--74121368 Score: 232
Period size: 50 Copynumber: 3.9 Consensus size: 50
74121165 AATGCTAGGG
* *
74121175 AGATATGTGAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCC
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCC
* * * *
74121225 AGATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GACACC
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCC
* * *
74121274 A-ATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCG
1 AGAT--ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCC
* * *
74121325 ATATACGAGAG-TCAGTGTAAGACTATGTCTGGGACATGGCATCG
1 AGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
74121369 ACTTTGATGT
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.02
49 5 0.04
50 109 0.89
51 4 0.03
52 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCC
Found at i:74121362 original size:100 final size:100
Alignment explanation
Indices: 74121189--74121370 Score: 285
Period size: 100 Copynumber: 1.8 Consensus size: 100
74121179 ATGTGAGCTT
* *
74121189 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCCAGATATGAGAGCTAGTGTAAGACCATGTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCCAGATACGAGAGCTAGTGTAAGACCATGTC
74121254 TGGAACATGGCATCGACACCAATAGATGAGAGCCA
66 TGGAACATGGCATCGACACCAATAGATGAGAGCCA
* * * *
74121289 GTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATATACGAGAG-TCAGTGTAAGACTATGT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCCAGATACGAGAGCT-AGTGTAAGACCATGT
*
74121353 CTGGGACATGGCATCGAC
65 CTGGAACATGGCATCGAC
74121371 TTTGATGTGT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 1 0.01
100 73 0.99
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (100 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCCAGATACGAGAGCTAGTGTAAGACCATGTC
TGGAACATGGCATCGACACCAATAGATGAGAGCCA
Found at i:74133991 original size:29 final size:29
Alignment explanation
Indices: 74133958--74134030 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
74133948 GTGACGAGAT
74133958 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74133987 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74134016 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74134031 GAGCTTGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74134048 original size:58 final size:59
Alignment explanation
Indices: 74133958--74134090 Score: 139
Period size: 58 Copynumber: 2.3 Consensus size: 59
74133948 GTGACGAGAT
* *
74133958 TGGCACTAAGTGTGC-ATGCTGGAAATATATGGCACTAAGTGTGCAT-GCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTGGAAAGATATGGCACTAAGTGTGC-TGGCT-GAAATCACA
* * * ** * *
74134016 TGGCACTAAGTGTGCGA-GCTTGAAGGGTATGGCACTGTGTGTGCTGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAGATATGGCACTAAGTGTGCTGGCTGAAATCACA
74134074 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
74134091 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
57 5 0.08
58 57 0.90
59 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.27
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTGGAAAGATATGGCACTAAGTGTGCTGGCTGAAATCACA
Found at i:74134086 original size:29 final size:29
Alignment explanation
Indices: 74134015--74134090 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
74134005 CTGGAAATAT
* * *
74134015 ATGGCACTAAGTGTGCGAGCTTGAAGGGT
1 ATGGCACTAAGTGTGCGAGCTTAAAGCGC
** *
74134044 ATGGCACTGTGTGTGCTG-GCTTAAATCGC
1 ATGGCACTAAGTGTGC-GAGCTTAAAGCGC
74134073 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
74134091 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.03
29 35 0.95
30 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTTAAAGCGC
Found at i:74137017 original size:39 final size:39
Alignment explanation
Indices: 74136900--74137120 Score: 289
Period size: 39 Copynumber: 5.6 Consensus size: 39
74136890 CGTTCAAACA
* * ** * **
74136900 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * * *
74136940 CCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
74136980 CCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
74137019 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
74137058 CCTTCGGGCTTAGCCCAGATATTATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
74137097 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
74137121 CTCGAACATT
Statistics
Matches: 158, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 121 0.77
40 37 0.23
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:74145032 original size:39 final size:39
Alignment explanation
Indices: 74144915--74145135 Score: 289
Period size: 39 Copynumber: 5.6 Consensus size: 39
74144905 CGTTCAAACA
* * ** * **
74144915 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * * *
74144955 CCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
74144995 CCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
74145034 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
74145073 CCTTCGGGCTTAGCCCAGATATTATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
74145112 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
74145136 CTCGAACATT
Statistics
Matches: 158, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 121 0.77
40 37 0.23
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:74153458 original size:15 final size:15
Alignment explanation
Indices: 74153433--74153479 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
74153423 TAAATATGTT
*
74153433 AGTGGCAGGTCAATG
1 AGTGGCTGGTCAATG
*
74153448 AGTGGTTGGTCAATG
1 AGTGGCTGGTCAATG
74153463 AGTGGCTGGTCAATG
1 AGTGGCTGGTCAATG
74153478 AG
1 AG
74153480 ACAAAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.23, C:0.11, G:0.40, T:0.26
Consensus pattern (15 bp):
AGTGGCTGGTCAATG
Found at i:74154659 original size:50 final size:50
Alignment explanation
Indices: 74154573--74154812 Score: 296
Period size: 50 Copynumber: 4.9 Consensus size: 50
74154563 TGATGCTAGG
* *
74154573 GAGATATGAAAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
74154623 GAGACATGAGAGCTAGTGTAAGACCATGTGTGGGACATGGCATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
74154671 -TGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * *
74154718 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
74154768 GATATACGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
74154813 ACTTTGATGT
Statistics
Matches: 163, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
45 30 0.18
46 1 0.01
47 7 0.04
48 5 0.03
49 5 0.03
50 115 0.71
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:74154752 original size:95 final size:97
Alignment explanation
Indices: 74154587--74154811 Score: 321
Period size: 95 Copynumber: 2.3 Consensus size: 97
74154577 TATGAAAGCT
* *
74154587 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGACATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGACATGAGAGCTAGTGTAAGACCATGT
* * * *
74154652 GTGGGACATGGCATCG-GCTTGATAT-GTGTC
66 CTGGGACATGGCATCGACCTCGATATAGAGTC
* *
74154682 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-CGATAGATGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCGAGACATGAGAGCTAGTGTAAGACCATG
74154746 TCTGGGACATGGCATCGACCTCGATATACGAGAGTC
65 TCTGGGACATGGCATCGACCTCGATAT---AGAGTC
74154782 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
74154812 GACTTTGATG
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
95 74 0.64
96 8 0.07
100 34 0.29
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGACATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGACCTCGATATAGAGTC
Found at i:74156594 original size:54 final size:54
Alignment explanation
Indices: 74156512--74156617 Score: 212
Period size: 54 Copynumber: 2.0 Consensus size: 54
74156502 TAGCCTAAGT
74156512 GTTAGCCACACGGACTGAGACACGGCCGTGTGTCTCAACCATGTGGGCGACACG
1 GTTAGCCACACGGACTGAGACACGGCCGTGTGTCTCAACCATGTGGGCGACACG
74156566 GTTAGCCACACGGACTGAGACACGGCCGTGTGTCTCAACCATGTGGGCGACA
1 GTTAGCCACACGGACTGAGACACGGCCGTGTGTCTCAACCATGTGGGCGACA
74156618 TGGCCTTAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.23, C:0.29, G:0.31, T:0.17
Consensus pattern (54 bp):
GTTAGCCACACGGACTGAGACACGGCCGTGTGTCTCAACCATGTGGGCGACACG
Found at i:74162278 original size:13 final size:13
Alignment explanation
Indices: 74162260--74162285 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74162250 TTCAACCTCC
74162260 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
74162273 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
74162286 TTGCGATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:74171243 original size:30 final size:30
Alignment explanation
Indices: 74171204--74171266 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
74171194 AAACATGTTT
*
74171204 ATCTCAATTTAATTTTTAACAGACTATATC
1 ATCTCAATTTAATTTTCAACAGACTATATC
* *
74171234 ATCTTAATTTAATTTTCAACATACTATATC
1 ATCTCAATTTAATTTTCAACAGACTATATC
74171264 ATC
1 ATC
74171267 ACATTTGAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.02, T:0.44
Consensus pattern (30 bp):
ATCTCAATTTAATTTTCAACAGACTATATC
Found at i:74171349 original size:14 final size:14
Alignment explanation
Indices: 74171330--74171359 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74171320 CAATAATCAT
74171330 ATATGTATATATGC
1 ATATGTATATATGC
*
74171344 ATATGTATTTATGC
1 ATATGTATATATGC
74171358 AT
1 AT
74171360 TGAGCTCGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (14 bp):
ATATGTATATATGC
Found at i:74174411 original size:48 final size:48
Alignment explanation
Indices: 74174289--74174521 Score: 277
Period size: 48 Copynumber: 4.8 Consensus size: 48
74174279 AAAGGGTAAG
* * *
74174289 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--A
* * * *
74174339 GTGTCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTTATATAA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAA
* * * * * **
74174387 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAA
* *
74174435 AGGCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATATAA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAA
* * *
74174483 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTAGCT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
74174522 TACATAACCT
Statistics
Matches: 151, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
48 110 0.73
50 41 0.27
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAA
Found at i:74174473 original size:96 final size:98
Alignment explanation
Indices: 74174289--74174521 Score: 337
Period size: 96 Copynumber: 2.4 Consensus size: 98
74174279 AAAGGGTAAG
* * * * * *
74174289 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCACATATCGGTGCCGATGCCATGT
* *
74174354 CCCAGACATGGTCTTACATTAGCTCTTATATAA
66 CCCAGACATGGTCTTACACTAGCTCTCATATAA
* *
74174387 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATGTCGAG-GCCGATGCTATG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCACATATCG-GTGCCGATGCCATG
74174449 TCCCAGACATGGTCTTACACTAGCTCTCATATAA
65 TCCCAGACATGGTCTTACACTAGCTCTCATATAA
*
74174483 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTAGCT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCT
74174522 TACATAACCT
Statistics
Matches: 122, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
96 86 0.70
97 2 0.02
98 34 0.28
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (98 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCACATATCGGTGCCGATGCCATGT
CCCAGACATGGTCTTACACTAGCTCTCATATAA
Found at i:74176055 original size:25 final size:24
Alignment explanation
Indices: 74176020--74176071 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
74176010 ACAAACACAA
74176020 CTCTTTATGAGCGTCCTGATATAGG
1 CTCTTTATGAGCGTCCTGATAT-GG
* *
74176045 CTCTTTTTGAGCTTCCTGATATGG
1 CTCTTTATGAGCGTCCTGATATGG
74176069 CTC
1 CTC
74176072 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.40
Consensus pattern (24 bp):
CTCTTTATGAGCGTCCTGATATGG
Found at i:74176082 original size:23 final size:25
Alignment explanation
Indices: 74176033--74176085 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
74176023 TTTATGAGCG
** *
74176033 TCCTGATATAGGCTCTTTTTGAGCT
1 TCCTGATATAGGCTCTGCTTGAACT
74176058 TCCTGATAT-GGCTC-GCTTGAACT
1 TCCTGATATAGGCTCTGCTTGAACT
74176081 TCCTG
1 TCCTG
74176086 TTACATGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.44
24 5 0.20
25 9 0.36
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.40
Consensus pattern (25 bp):
TCCTGATATAGGCTCTGCTTGAACT
Found at i:74179153 original size:42 final size:43
Alignment explanation
Indices: 74179040--74179153 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
74179030 GGAATTAAAA
* *
74179040 AATCTGAGCTCGTTGAATGGTCCGAGCTCGTGATATATGTGAG
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
* * *
74179083 AATCTGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AG
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
* *
74179125 CATCTGAGCTCGTTGAGTGGTTCGAGTTC
1 AATCTGAGCTCGTTGAGTGGTCCGAGTTC
74179154 ATAATGGATG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 26 0.43
43 35 0.57
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (43 bp):
AATCTGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
Found at i:74179188 original size:51 final size:51
Alignment explanation
Indices: 74179112--74179224 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
74179102 GTCCAAGTTC
* * * * *
74179112 GTGATATATGTAGCATCTGAGCTCGTTGAGTGGTTCGAGTTCATAATGGAT
1 GTGATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGAT
*
74179163 GTGATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGAT
1 GTGATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGAT
*
74179214 GTGTTACATGT
1 GTGATACATGT
74179225 TATAAGGTAG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (51 bp):
GTGATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGAT
Found at i:74180815 original size:30 final size:30
Alignment explanation
Indices: 74180781--74180839 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
74180771 TATTTTATTA
74180781 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
74180811 TTAATTTTGTTATTATTTTAGAGGTATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
74180840 ACTTGTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:74183370 original size:27 final size:28
Alignment explanation
Indices: 74183293--74183361 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
74183283 GCGTAGATCA
*
74183293 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
74183321 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
74183349 CGATA-TACCCCTA
1 CGAAATTACCCCTA
74183362 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:74189361 original size:48 final size:50
Alignment explanation
Indices: 74189287--74189415 Score: 136
Period size: 48 Copynumber: 2.6 Consensus size: 50
74189277 GAAACCAAAC
* * *
74189287 AAGCCTTTGTGGTTAGTTATCCAAAAAGCCTATGT-G-ACATTATCTAGG
1 AAGCCTTTGTGGCTAATTATCTAAAAAGCCTATGTGGCACATTATCTAGG
** * * *
74189335 AAGCCTTTGTGGCTAATTATCTAAAAAAACTATGTGGCATATTATTTGGG
1 AAGCCTTTGTGGCTAATTATCTAAAAAGCCTATGTGGCACATTATCTAGG
* * *
74189385 AAGCCTTAGTGGCAAAGTTATCTGAAAAGCC
1 AAGCCTTTGTGGCTAA-TTATCTAAAAAGCC
74189416 CAGATGGTGA
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
48 30 0.46
49 1 0.02
50 23 0.35
51 11 0.17
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (50 bp):
AAGCCTTTGTGGCTAATTATCTAAAAAGCCTATGTGGCACATTATCTAGG
Found at i:74191445 original size:2 final size:2
Alignment explanation
Indices: 74191438--74191465 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74191428 GATGGTAAGG
74191438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74191466 GAAGAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74195429 original size:28 final size:29
Alignment explanation
Indices: 74195397--74195495 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74195387 ATAATAAGCC
*
74195397 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74195425 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74195453 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74195482 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74195496 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74195623 original size:14 final size:14
Alignment explanation
Indices: 74195604--74195631 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74195594 CACCCCATGC
74195604 ATACATGTATATAT
1 ATACATGTATATAT
74195618 ATACATGTATATAT
1 ATACATGTATATAT
74195632 TTATCATTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
ATACATGTATATAT
Found at i:74198430 original size:102 final size:98
Alignment explanation
Indices: 74198232--74198440 Score: 312
Period size: 102 Copynumber: 2.1 Consensus size: 98
74198222 GTATGATGTG
*
74198232 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGCGAAATGTATATATATGTGATAAGGCCT
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAATGTATATATATGTGATAAGGCCT
*
74198297 AATGGCCGATGTGATGAATGCGAAAATGTATA-
66 AATGGCCGATGTGATGAATGCGAAAACGTATAC
*
74198329 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAAATATATGTATGTGATAA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCG-AAATGT--ATATA--TATGTGATAA
* *
74198394 GGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATC
61 GGCCTAATGGCCGATGTGATGAATGCGAAAACGTATA-C
74198433 TATATGTG
1 TATATGTG
74198441 TGGTAAAGCC
Statistics
Matches: 100, Mismatches: 5, Indels: 7
0.89 0.04 0.06
Matches are distributed among these distances:
97 37 0.37
98 6 0.06
100 5 0.05
102 44 0.44
104 8 0.08
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (98 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAATGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGCGAAAACGTATAC
Found at i:74198465 original size:53 final size:49
Alignment explanation
Indices: 74198232--74198423 Score: 314
Period size: 49 Copynumber: 3.9 Consensus size: 49
74198222 GTATGATGTG
*
74198232 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGCG-AAATGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
74198280 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
*
74198329 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAAATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGT--ATA
*
74198380 TATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
74198424 GCGTATATCT
Statistics
Matches: 137, Mismatches: 2, Indels: 5
0.95 0.01 0.03
Matches are distributed among these distances:
48 38 0.28
49 54 0.39
51 5 0.04
53 40 0.29
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
Found at i:74200477 original size:40 final size:40
Alignment explanation
Indices: 74200433--74200802 Score: 587
Period size: 40 Copynumber: 9.2 Consensus size: 40
74200423 GAGAATTGAG
*
74200433 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
74200473 AGTGATGCATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
74200513 ACTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
74200553 AGTGATGTATCCGGACTATGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
74200593 AGTGATGTATCCGGACTACGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
74200633 AGTGATGTATCCGGACTACGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
74200673 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
74200713 AGTGATGTATCCAGACTACGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * * *
74200753 AGTGATGTATCCGGGCTAGGTCCCAAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
74200793 GGTGACGTAT
1 AGTGATGTAT
74200803 ATTCGGGCCT
Statistics
Matches: 311, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 311 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:74201630 original size:40 final size:40
Alignment explanation
Indices: 74201536--74201668 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
74201526 GTATCCAGAC
* * * *
74201536 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGT
* * *
74201577 CAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGT
* * * * * *
74201617 TAAGTCCCAAAGGCATTTGTGCGAATCACTATAACCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGT
*
74201657 TATGTCCCGAAG
1 TAAGTCCCGAAG
74201669 ACAATCGAGC
Statistics
Matches: 75, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 56 0.75
41 19 0.25
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGT
Found at i:74204391 original size:38 final size:38
Alignment explanation
Indices: 74204294--74204401 Score: 146
Period size: 39 Copynumber: 2.8 Consensus size: 38
74204284 ATAATCACGT
*
74204294 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAAAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAAACTA
**
74204333 GCACGAATGCCTTCGGGTCTTAGCCCGGATAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAAACTA
*
74204371 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
74204402 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
37 2 0.03
38 30 0.48
39 31 0.49
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAAACTA
Found at i:74212278 original size:40 final size:40
Alignment explanation
Indices: 74212233--74212399 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74212223 CGGAATATAA
74212233 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74212273 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74212313 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74212353 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74212392 CCGGATAT
1 CCGGATAT
74212400 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74215855 original size:53 final size:49
Alignment explanation
Indices: 74215723--74215873 Score: 257
Period size: 49 Copynumber: 3.0 Consensus size: 49
74215713 ACTATGTATG
*
74215723 ATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
74215772 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
74215821 ATGTAAATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATG----TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
74215874 GCGTATATCT
Statistics
Matches: 97, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
49 51 0.53
53 46 0.47
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (49 bp):
ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:74215887 original size:53 final size:51
Alignment explanation
Indices: 74215728--74215890 Score: 249
Period size: 53 Copynumber: 3.2 Consensus size: 51
74215718 GTATGATGTG
*
74215728 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--ATGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
*
74215777 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAAATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAA-GTATATA
**
74215830 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
*
74215881 TCTATATGTG
1 TATATATGTG
74215891 TGGTAAAGTC
Statistics
Matches: 104, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
49 41 0.39
50 3 0.03
51 13 0.12
52 3 0.03
53 44 0.42
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (51 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATA
Found at i:74215914 original size:53 final size:53
Alignment explanation
Indices: 74215728--74215915 Score: 186
Period size: 53 Copynumber: 3.6 Consensus size: 53
74215718 GTATGATGTG
* * * *
74215728 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA--T--GTA
1 TATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAACGTAAATA
* * * *
74215777 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAAATA
1 TATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAACGTAAATA
* * * * * *
74215830 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATC
1 TATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAACGTAAATA
* * * *
74215883 TATATGTGTGGTAAAGTCGAATGGCTAATGTGA
1 TATATATGTGATAAAGCCGAATGGCCAATGTGA
74215916 ATGTTGTAAC
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 45 0.37
51 1 0.01
53 77 0.63
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.31
Consensus pattern (53 bp):
TATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAACGTAAATA
Found at i:74217790 original size:36 final size:37
Alignment explanation
Indices: 74217708--74217790 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 37
74217698 TTTGGATTGA
* *
74217708 ATGAAGGGTATAAGTGATGCAATTTTGAAAGAGTGTT
1 ATGAAGGGTATAAATGATGCAATTTTGAAAGAGCGTT
* *
74217745 ATG-A--CTATAAATG-TG-ATTCTTTGAAAGAGCGTT
1 ATGAAGGGTATAAATGATGCAAT-TTTGAAAGAGCGTT
74217778 ATGAAGGGTATAA
1 ATGAAGGGTATAA
74217791 GCTAATATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
32 2 0.05
33 18 0.49
34 8 0.22
36 6 0.16
37 3 0.08
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.33
Consensus pattern (37 bp):
ATGAAGGGTATAAATGATGCAATTTTGAAAGAGCGTT
Found at i:74224221 original size:28 final size:29
Alignment explanation
Indices: 74224189--74224287 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74224179 ATAATAAGCC
*
74224189 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74224217 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74224245 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74224274 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74224288 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74227392 original size:49 final size:51
Alignment explanation
Indices: 74227324--74227431 Score: 202
Period size: 49 Copynumber: 2.2 Consensus size: 51
74227314 GTATGATGTG
74227324 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTAT-
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
74227374 TA-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
74227424 TATATATG
1 TATATATG
74227432 GTAAAGAAGG
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
49 47 0.84
50 4 0.07
51 5 0.09
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (51 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATA
Found at i:74229201 original size:28 final size:29
Alignment explanation
Indices: 74229169--74229267 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74229159 ATAATAAGCC
*
74229169 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74229197 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74229225 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74229254 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74229268 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74235083 original size:48 final size:48
Alignment explanation
Indices: 74234996--74235092 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
74234986 AACTCCTGTA
* * *
74234996 TAAGACCATATCTGGGATATGGCTTTGGTAGTGACATGTGATCCCATG
1 TAAGACCATATCTGGGACATGACTTTGGCAGTGACATGTGATCCCATG
* **
74235044 TAAGACCATGTCTGGGACATGACTTTGGCA-TCGTTATGTGATCCCATG
1 TAAGACCATATCTGGGACATGACTTTGGCAGT-GACATGTGATCCCATG
74235092 T
1 T
74235093 CCAGGACATG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 1 0.02
48 41 0.98
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (48 bp):
TAAGACCATATCTGGGACATGACTTTGGCAGTGACATGTGATCCCATG
Found at i:74242145 original size:39 final size:40
Alignment explanation
Indices: 74242079--74242180 Score: 120
Period size: 39 Copynumber: 2.5 Consensus size: 40
74242069 AGCAACGTTT
*
74242079 TTAACGGCG-TTTGAATGAAAAACGCCGCTAAAGAAT-GAGTA
1 TTAACGGCGCTTTG--TTAAAAACGCCGCTAAAG-ATCGAGTA
* *
74242120 TTAGCGGCGC-TTGTTAAAAATGCCGCTAAAGATCGAGTA
1 TTAACGGCGCTTTGTTAAAAACGCCGCTAAAGATCGAGTA
*
74242159 TTAACGGCGCTTTTTTAAAAAC
1 TTAACGGCGCTTTGTTAAAAAC
74242181 ACCACCATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.04
39 30 0.58
40 9 0.17
41 11 0.21
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACGGCGCTTTGTTAAAAACGCCGCTAAAGATCGAGTA
Found at i:74243949 original size:27 final size:26
Alignment explanation
Indices: 74243911--74243962 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
74243901 CTCGTTGCAA
*
74243911 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
74243938 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
74243963 GTAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:74251345 original size:40 final size:40
Alignment explanation
Indices: 74251268--74251373 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
74251258 GATGTCCGGG
* *
74251268 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAA
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAATCCGAA
** **
74251308 CTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAATCCGAA
*
74251348 TTAAGTCCCGAAGGCATTTGTGCGAG
1 CTAAGTCCCGAAGGCATTTGTGCGAG
74251374 CTATTATAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 47 0.84
41 8 0.14
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAATCCGAA
Found at i:74259369 original size:39 final size:40
Alignment explanation
Indices: 74259273--74259424 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
74259263 TCGAATGATG
* *
74259273 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* *
74259313 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGT-TCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
74259352 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
74259393 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74259425 CGCTATATCC
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 33 0.35
40 50 0.53
41 10 0.11
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:74262528 original size:48 final size:48
Alignment explanation
Indices: 74262457--74262714 Score: 169
Period size: 48 Copynumber: 5.4 Consensus size: 48
74262447 GCTCCCGTAG
* *
74262457 AAGACCATATCTGGGATATGGCTTTAGCAT-TGACATGTGATCCCATGT
1 AAGACCATGTCTGGGACATGGCTTTAGCATCT-ACATGTGATCCCATGT
* ** *
74262505 AAGACCATGTCTGGGACATGGCTTTGGCATCTTTATGTGATCCTATGT
1 AAGACCATGTCTGGGACATGGCTTTAGCATCTACATGTGATCCCATGT
* ** * *
74262553 AAGACCATGT-TCGGGACATGGCATTAGCATCATA-ATAAGA-CATCGTGT
1 AAGACCATGTCT-GGGACATGGCTTTAGCATC-TACATGTGATC-CCATGT
* ** *
74262601 AAGACCATAG-CTGGG-CTATCGGC-TT--CA-ATATGTGCGATCCCATGT
1 AAGACCAT-GTCTGGGAC-AT-GGCTTTAGCATCTACATGTGATCCCATGT
* * * * *
74262646 AAGACTATGTCTAGGACATGGCATTAGCATCGT-TATGTGGTCCCATGT
1 AAGACCATGTCTGGGACATGGCTTTAGCATC-TACATGTGATCCCATGT
* *
74262694 AAGACCATATCTGGGATATGG
1 AAGACCATGTCTGGGACATGG
74262715 TGTTGGCACC
Statistics
Matches: 163, Mismatches: 30, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
44 6 0.04
45 22 0.13
46 4 0.02
47 5 0.03
48 118 0.72
49 8 0.05
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (48 bp):
AAGACCATGTCTGGGACATGGCTTTAGCATCTACATGTGATCCCATGT
Found at i:74264564 original size:21 final size:22
Alignment explanation
Indices: 74264525--74264565 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
74264515 ATTTCGCAAT
74264525 CATTTCATAGTCAAAAGTCATA
1 CATTTCATAGTCAAAAGTCATA
74264547 CATTATCATA-TC-AAAGTCA
1 CATT-TCATAGTCAAAAGTCA
74264566 AATATCAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 6 0.33
23 5 0.28
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (22 bp):
CATTTCATAGTCAAAAGTCATA
Found at i:74266138 original size:31 final size:30
Alignment explanation
Indices: 74266098--74266160 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
74266088 CCTTTTCATA
74266098 TTTCAATTTCATAACACTGGGCCGAAGCCT
1 TTTCAATTTCATAACACTGGGCCGAAGCCT
**
74266128 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCA-ATTTCATAACACTGGGCCGAAGCCT
74266159 TT
1 TT
74266161 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCAATTTCATAACACTGGGCCGAAGCCT
Found at i:74266435 original size:23 final size:23
Alignment explanation
Indices: 74266373--74266512 Score: 248
Period size: 23 Copynumber: 6.1 Consensus size: 23
74266363 CCTAGCCTCT
74266373 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74266395 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74266417 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74266440 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74266463 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
74266487 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74266510 TTT
1 TTT
74266513 TGCACTTCCT
Statistics
Matches: 113, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
21 5 0.04
22 26 0.23
23 60 0.53
24 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74266481 original size:47 final size:47
Alignment explanation
Indices: 74266352--74266513 Score: 260
Period size: 47 Copynumber: 3.5 Consensus size: 47
74266342 GCTTTATCAT
*
74266352 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTA
*
74266399 ATAACT-GGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
74266444 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
74266491 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74266514 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 3, Indels: 8
0.91 0.03 0.07
Matches are distributed among these distances:
44 16 0.15
45 20 0.19
46 17 0.16
47 55 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:74266495 original size:70 final size:68
Alignment explanation
Indices: 74266352--74266513 Score: 256
Period size: 70 Copynumber: 2.3 Consensus size: 68
74266342 GCTTTATCAT
*
74266352 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGCATAAGCC
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGCATAAGCC
74266416 CTTTA
64 CTTTA
74266421 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA-AAGCCC-TTTAATAACT-GGGCATAAGC
74266485 CCTTTA
63 CCTTTA
74266491 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74266514 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
67 12 0.14
68 15 0.17
69 22 0.25
70 39 0.44
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (68 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGCATAAGCCCT
TTA
Found at i:74266590 original size:20 final size:20
Alignment explanation
Indices: 74266567--74266619 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
74266557 GAACATCTCG
74266567 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
74266587 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
74266607 TGTGCATATCATA
1 TGTGCATATCATA
74266620 TCATGTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:74266690 original size:25 final size:25
Alignment explanation
Indices: 74266662--74266709 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74266652 ATATATAAAC
* * *
74266662 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74266687 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74266710 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74274949 original size:39 final size:39
Alignment explanation
Indices: 74274868--74275030 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
74274858 TATGGTAACC
* *
74274868 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
74274908 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74274947 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
74274986 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
74275025 CGCACA
1 CGCACA
74275031 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:74277225 original size:25 final size:25
Alignment explanation
Indices: 74277183--74277230 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74277173 ATATATAAAC
* * * *
74277183 CCTAGGGGTATAATGGTCTTTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74277208 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74277231 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74279842 original size:42 final size:43
Alignment explanation
Indices: 74279732--74279844 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
74279722 AGCTCGTACA
* * *
74279732 ATGCCAACATCCTAGACATGGTCTTACATGTAATTAAATATCG
1 ATGCCAACATCCCAGACATGGTCTTACATGAAATAAAATATCG
* *
74279775 ATACC-ACTATCCCAGACAGGGTCTTACATGAAATAAAATAT-G
1 ATGCCAAC-ATCCCAGACATGGTCTTACATGAAATAAAATATCG
*
74279817 ATGCCAACATCCCAAACATGGTCTTACA
1 ATGCCAACATCCCAGACATGGTCTTACA
74279845 CATAAATCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 25 0.42
43 35 0.58
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACATGAAATAAAATATCG
Found at i:74284032 original size:46 final size:46
Alignment explanation
Indices: 74283931--74284018 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
74283921 TGTAACCCGC
* * * *
74283931 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
74283977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
74284019 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:74292581 original size:46 final size:47
Alignment explanation
Indices: 74292518--74292791 Score: 378
Period size: 46 Copynumber: 5.9 Consensus size: 47
74292508 TTCGACATGA
* * * * * *
74292518 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* ** * *** *
74292564 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
74292611 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
74292657 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
74292703 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
74292749 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCA
74292792 TAGAGCACAC
Statistics
Matches: 208, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 168 0.81
47 40 0.19
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:74295635 original size:24 final size:24
Alignment explanation
Indices: 74295615--74295702 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
74295605 CAGATTTGAG
74295615 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
74295639 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * * *
74295663 TGGCACTATGTGTGCGGAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
74295687 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
74295703 GAGTTGAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.38
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:74301794 original size:48 final size:48
Alignment explanation
Indices: 74301726--74301902 Score: 216
Period size: 48 Copynumber: 3.7 Consensus size: 48
74301716 CACACAACAA
* * *
74301726 GCTGATGCCATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAG
** * *
74301775 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAG
* * *
74301821 G-TCGATGCATGTCCCAAACATGTCTCACACTAGCTTTTATATCTCGAG
1 GCT-GATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAG
*
74301869 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
74301903 ACACGTATCA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 35 0.33
47 4 0.04
48 60 0.56
49 7 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCGAG
Found at i:74301842 original size:46 final size:48
Alignment explanation
Indices: 74301689--74301902 Score: 199
Period size: 48 Copynumber: 4.6 Consensus size: 48
74301679 ATGCCGACGT
* * * *
74301689 CATGTCCCAGACATGGTCTTACACTAAC-AC-ACA--ACAA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTCTACATCTCAAGGCCGATG
* * * * * *
74301733 CCATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
* * *
74301782 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
* * * * *
74301828 CATGTCCCAAACATGTCTCACACTAGCTTTTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
74301876 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74301903 ACACGTATCA
Statistics
Matches: 135, Mismatches: 27, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
44 12 0.09
45 12 0.09
46 37 0.27
47 4 0.03
48 63 0.47
49 7 0.05
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGCCGATG
Found at i:74301855 original size:94 final size:95
Alignment explanation
Indices: 74301729--74301902 Score: 287
Period size: 94 Copynumber: 1.8 Consensus size: 95
74301719 ACAACAAGCT
* * * *
74301729 GATGCCATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGAC
1 GATGCCATGTCCCAAACAGGTCTCACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGAC
74301794 ATGTCTTACACTAGCTCTCGTCTCAATGTC
66 ATGTCTTACACTAGCTCTCGTCTCAATGTC
* *
74301824 GATG-CATGTCCCAAACATGTCTCACACTAGCTTTTATATCTCGAGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAAACAGGTCTCACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGAC
74301888 ATGTCTTACACTAGC
66 ATGTCTTACACTAGC
74301903 ACACGTATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 69 0.95
95 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (95 bp):
GATGCCATGTCCCAAACAGGTCTCACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCGTCTCAATGTC
Found at i:74309683 original size:15 final size:14
Alignment explanation
Indices: 74309668--74309702 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
74309658 TCAATACTTA
74309668 AATTTTAAATATTT
1 AATTTTAAATATTT
*
74309682 AATTCTTAAACATTT
1 AATT-TTAAATATTT
74309697 AATTTT
1 AATTTT
74309703 TTAATTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (14 bp):
AATTTTAAATATTT
Found at i:74320463 original size:43 final size:43
Alignment explanation
Indices: 74320415--74320498 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
74320405 ATCACATGTA
**
74320415 TCGCATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCACAATGAACTCGGACCACTCAACGAGCTCGGATGC
*
74320458 TCGCATCCACAATGAACTCGGACCACTCGACGAGCTCGGAT
1 TCGCATCCACAATGAACTCGGACCACTCAACGAGCTCGGAT
74320499 ACACATATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCGGACCACTCAACGAGCTCGGATGC
Done.