Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 252 of 345
Found at i:74324511 original size:13 final size:13
Alignment explanation
Indices: 74324493--74324517 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74324483 CCGGGCACAC
74324493 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
74324506 GCCCGTGTCCCT
1 GCCCGTGTCCCT
74324518 CACATGGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:74325680 original size:46 final size:46
Alignment explanation
Indices: 74325555--74325766 Score: 155
Period size: 46 Copynumber: 4.6 Consensus size: 46
74325545 GTGCTGATGC
* *
74325555 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCG-AGGCCAATG
* * * * * * *
74325600 CATGTCCTAGATATTTCTTACACTGGC-TTACGTCTCGAGGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAGGCCAATG
* * * *
74325646 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCAATG
* * * * * *
74325692 TCATATCCCAAACATGGTCTTACACTAGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCAATG
*
74325740 CATGTCGCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74325767 TCACGTAAGT
Statistics
Matches: 131, Mismatches: 28, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
44 9 0.07
45 14 0.11
46 59 0.45
47 24 0.18
48 24 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCAATG
Found at i:74334802 original size:21 final size:23
Alignment explanation
Indices: 74334771--74334817 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
74334761 AATTTGGCTC
74334771 TAGAATAGGGC-ACACGTCC-GTG
1 TAGAATAGGGCAACACG-CCTGTG
74334793 TAGAA-AGGGCAACACGCCTGTG
1 TAGAATAGGGCAACACGCCTGTG
74334815 TAG
1 TAG
74334818 CCATTAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.30, C:0.21, G:0.32, T:0.17
Consensus pattern (23 bp):
TAGAATAGGGCAACACGCCTGTG
Found at i:74335965 original size:50 final size:50
Alignment explanation
Indices: 74335888--74336017 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 50
74335878 GTGCAAGTGC
* * *
74335888 CGATGCCGTGTCCCAGACACGGCCTTACACAAGCTCTAGCATATCTGT-A
1 CGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGA
* * *
74335937 TGAATGCCATGTCCTAGACATGGTCTTACACAAGCTCTAGCATATCTGTGC
1 CG-ATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGA
*
74335988 CGATGCCATGTCCCAGATATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
74336018 TGACACATCT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 1 0.01
50 68 0.97
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGA
Found at i:74336075 original size:46 final size:46
Alignment explanation
Indices: 74335986--74336202 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 46
74335976 GCATATCTGT
*
74335986 GCCGATGCCATGTCCCAGATATGGTCTTACACTGAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTTA-ATCTCGTAG
*
74336032 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTTAA-TCTCGTAG
* * * *
74336078 GCCGATGCATGTCCCAGACATGTCTTACATTAGCACTT-GTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTTAATCTCGTAG
* * * * ***
74336124 GTCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAGGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACT-TAATCTCGTAG
74336172 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
74336203 AGCTCATGCA
Statistics
Matches: 141, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 66 0.47
47 29 0.21
48 19 0.13
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTTAATCTCGTAG
Found at i:74336151 original size:94 final size:92
Alignment explanation
Indices: 74336034--74336205 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
74336024 ATCTCGTAGC
* **
74336034 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TAAGTCTCGAGGCCGATGCATGTCCCAGACA
1 CGATGCATATCCCAGACATGTCTTACACTGGCTCTAA-TAACGAGGCCGATGCATGTCCCAGACA
*
74336098 TGTCTTACATTAGCACTTGTCTCAATGT
65 TGTCTTACACTAGCACTTGTCTCAATGT
* * *
74336126 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATATCCCAGACAT-GTCTTACACTGGCTCTAATAACGAGGCCGATGCATGTCCCAGAC
74336191 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
74336206 TCATGCAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 50 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (92 bp):
CGATGCATATCCCAGACATGTCTTACACTGGCTCTAATAACGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTTGTCTCAATGT
Found at i:74342568 original size:29 final size:29
Alignment explanation
Indices: 74342535--74342593 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
74342525 TCATTTATTT
74342535 ACCTACGGAAACATCAAATTCCCACTCTA
1 ACCTACGGAAACATCAAATTCCCACTCTA
74342564 ACCTACGGAAACATCAAATTCCCACTCTA
1 ACCTACGGAAACATCAAATTCCCACTCTA
74342593 A
1 A
74342594 TATGTACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.34, G:0.07, T:0.20
Consensus pattern (29 bp):
ACCTACGGAAACATCAAATTCCCACTCTA
Found at i:74349045 original size:40 final size:40
Alignment explanation
Indices: 74349000--74349167 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
74348990 CGGAATACAA
* *
74349000 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
74349040 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* ** *
74349080 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATAAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
74349120 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
74349160 CCGGATAT
1 CCGGATAT
74349168 CATTCAATTG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 105 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:74349140 original size:80 final size:80
Alignment explanation
Indices: 74349000--74349167 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
74348990 CGGAATACAA
* * * * *
74349000 CCGGATATAACCACACGCATGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATAAGCCCGGATATAACGACTAGCACAAATG
*
74349065 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
74349080 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATAAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATAAGCCCGGATATAACG--ACTAGCACAAA
*
74349143 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
74349160 CCGGATAT
1 CCGGATAT
74349168 CATTCAATTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 73 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATAAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:74356767 original size:40 final size:40
Alignment explanation
Indices: 74356697--74356863 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
74356687 CGGAATACAA
* * * *
74356697 CCGGATATAACCACACGCA-GAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
74356736 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
* * *
74356776 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
* * * *
74356816 CCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACG--ACTCGCACAAATGCCTTCGGGTATTAGC
74356856 CCGGATAT
1 CCGGATAT
74356864 CATTCAATTG
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 19 0.17
40 92 0.83
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
Found at i:74356815 original size:80 final size:78
Alignment explanation
Indices: 74356697--74356863 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 78
74356687 CGGAATACAA
* * *
74356697 CCGGATATAACCACACGCAGAATGCCTTCGGGTCTTAGCCCGGATATAA-CGACTCGCACAAATG
1 CCGGATATAACAACACGCAGAATGCCTTCGGGTATTAGCCCGGATA-AAGC-ACTAGCACAAATG
*
74356761 CCTTCGGGTATTAGC
64 CCTTCGGGTATTAAC
** *
74356776 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATAAAGTCACTAGCACAATTG
1 CCGGATATAACAACACGCA-GAATGCCTTCGGGTATTAGCCCGGATAAAG-CACTAGCACAAATG
*
74356841 CCTTCGGGTCTTAAC
64 CCTTCGGGTATTAAC
74356856 CCGGATAT
1 CCGGATAT
74356864 CATTCAATTG
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
79 18 0.23
80 58 0.75
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (78 bp):
CCGGATATAACAACACGCAGAATGCCTTCGGGTATTAGCCCGGATAAAGCACTAGCACAAATGCC
TTCGGGTATTAAC
Found at i:74361883 original size:93 final size:93
Alignment explanation
Indices: 74361771--74361942 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74361761 GCCCATAAGT
* *
74361771 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74361836 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74361864 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74361929 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
74361943 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74361938 original size:46 final size:46
Alignment explanation
Indices: 74361763--74361938 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
74361753 TGTAACCCGC
* * *
74361763 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
74361809 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
74361859 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
74361902 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74361939 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:74367178 original size:2 final size:2
Alignment explanation
Indices: 74367171--74367196 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74367161 GCACTTATGA
74367171 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
74367197 GGTATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74367853 original size:40 final size:40
Alignment explanation
Indices: 74367787--74367966 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
74367777 ATTCGGATTG
74367787 ATAACCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74367825 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74367865 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74367905 ATAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
74367945 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
74367967 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 13 0.10
39 15 0.12
40 97 0.78
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74374051 original size:40 final size:40
Alignment explanation
Indices: 74373988--74374174 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
74373978 ATTCGGATTG
74373988 ATAACCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74374026 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74374066 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74374106 ATAACCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74374146 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74374175 AGCAGTAGCT
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
38 13 0.09
40 126 0.91
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74383872 original size:6 final size:6
Alignment explanation
Indices: 74383851--74384047 Score: 127
Period size: 6 Copynumber: 31.8 Consensus size: 6
74383841 TATTAGAACT
* * * * *
74383851 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AGAATC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
74383900 AGAATC AGAATT AGGTAA-C AGAATC AAAATC AGAATT AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * *
74383950 AGAATC AGCATC AGGTAA-C AGAATC AGAATC AGAACC AGAATT AGAATT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC
*
74383999 AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
74384048 GTGAATGCAA
Statistics
Matches: 151, Mismatches: 22, Indels: 36
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.07
6 116 0.77
7 15 0.10
8 9 0.06
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:74383904 original size:37 final size:37
Alignment explanation
Indices: 74383853--74384018 Score: 134
Period size: 37 Copynumber: 4.1 Consensus size: 37
74383843 TTAGAACTAG
* *
74383853 AATCAAAATGAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
*
74383890 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
1 AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
*
74383927 AATCAGAATTAGGTAACAGAATCAGAATCAGCATCAGGTAACAGAATCAG
1 AATCA-AA--A--T--CAGAATCAG----A--ATCAGGTAACAGAATCAA
* * * * *
74383977 AATCAGAACCAGAATTAGAATTAGGTAACAGAATCAG
1 AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
74384014 AATCA
1 AATCA
74384019 GTATCAGGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 26
0.75 0.06 0.18
Matches are distributed among these distances:
37 61 0.57
38 2 0.02
39 1 0.01
40 1 0.01
42 1 0.01
43 8 0.07
44 9 0.08
47 1 0.01
48 1 0.01
49 1 0.01
50 21 0.20
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.18
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:74383924 original size:25 final size:25
Alignment explanation
Indices: 74383896--74383984 Score: 151
Period size: 25 Copynumber: 3.6 Consensus size: 25
74383886 TCAAAATCAA
74383896 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATTAGGTAACAG
*
74383921 AATCAAAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATTAGGTAACAG
* *
74383946 AATCAGAATCAGCATCAGGTAACAG
1 AATCAGAATCAGAATTAGGTAACAG
74383971 AATCAGAATCAGAA
1 AATCAGAATCAGAA
74383985 CCAGAATTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGAATTAGGTAACAG
Found at i:74384009 original size:25 final size:25
Alignment explanation
Indices: 74383968--74384047 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
74383958 CATCAGGTAA
*
74383968 CAGAATCA-G-AATCAGAACCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
* *
74383992 TAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
*
74384017 CAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
74384042 CAGAAT
1 CAGAAT
74384048 GTGAATGCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
24 6 0.13
25 39 0.83
26 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:74384038 original size:19 final size:19
Alignment explanation
Indices: 74383863--74384019 Score: 99
Period size: 19 Copynumber: 8.7 Consensus size: 19
74383853 AATCAAAATG
*
74383863 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* *
74383882 AGAATCAAAATCA--AAATC
1 AGAATCAGAATCAGGTAA-C
*
74383900 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
74383919 AGAATCA-AA--A--T--C
1 AGAATCAGAATCAGGTAAC
*
74383931 AGAATTAGGTAA-CA-G-AATC
1 AGAATCA-G-AATCAGGTAA-C
*
74383950 AGAATCAGCATCAGGTAAC
1 AGAATCAGAATCAGGTAAC
74383969 AGAATCAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
* *
74383987 AGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
74384006 AGAATCAGAATCAG
1 AGAATCAGAATCAG
74384020 TATCAGGTAA
Statistics
Matches: 107, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
12 7 0.07
14 1 0.01
15 2 0.02
16 2 0.02
17 4 0.04
18 30 0.28
19 55 0.51
20 6 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:74384214 original size:27 final size:26
Alignment explanation
Indices: 74384167--74384217 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
74384157 CGAGGTTACC
*
74384167 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
74384193 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
74384218 TCGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:74384512 original size:27 final size:26
Alignment explanation
Indices: 74384462--74384707 Score: 205
Period size: 27 Copynumber: 9.3 Consensus size: 26
74384452 GGGGTAAAAT
* *
74384462 GGTAATTTTACCCCATA-AGGGTATCTC
1 GGTAATTCTA-CCC-TACAGGGTATTTC
* *
74384489 GGTAATTCTACCTTACAGGAGTATTTT
1 GGTAATTCTACCCTACAGG-GTATTTC
* * *
74384516 AGTAATCCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* * * *
74384543 GATATTTCTACTCTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
* *
74384570 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
*
74384597 AGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
74384624 GGT-A---TACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
* *
74384647 GATATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
74384674 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
74384701 GGTAATT
1 GGTAATT
74384708 TTATAAATCG
Statistics
Matches: 179, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
23 21 0.12
25 2 0.01
26 10 0.06
27 139 0.78
28 7 0.04
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:74384587 original size:81 final size:77
Alignment explanation
Indices: 74384470--74384672 Score: 246
Period size: 81 Copynumber: 2.6 Consensus size: 77
74384460 ATGGTAATTT
* * * * * *
74384470 TACCCCATAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTTAGTAATCCTACCCTATAGG
1 TACCCTATAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATCCTACCCTACAGG
*
74384535 GGTATTTCGATA
66 GATATTTCGATA
* *
74384547 TTTCTACTCTATAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTA
1 ----TACCCTATAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATCCTACCCTA
*
74384612 CAGGGATATTTCGGTA
62 CAGGGATATTTCGATA
* *
74384628 TACCCTA-CAGGGATATTTCGATATTTCTACCCTACAGGGGTATTT
1 TACCCTATAAGGG-TATTTCGATAATTCTACCCTACAGGGGTATTT
74384673 CGGTATTTCT
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
76 4 0.04
77 37 0.34
81 67 0.62
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (77 bp):
TACCCTATAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATCCTACCCTACAGG
GATATTTCGATA
Found at i:74384635 original size:23 final size:23
Alignment explanation
Indices: 74384605--74384678 Score: 94
Period size: 23 Copynumber: 3.0 Consensus size: 23
74384595 TTAGTAATTC
74384605 TACCCTACAGGGATATTTCGGTA
1 TACCCTACAGGGATATTTCGGTA
*
74384628 TACCCTACAGGGATATTTCGATA
1 TACCCTACAGGGATATTTCGGTA
*
74384651 TTTCTACCCTACAGGGGTATTTCGGTA
1 ----TACCCTACAGGGATATTTCGGTA
74384678 T
1 T
74384679 TTCTACCTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 23 0.52
27 21 0.48
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (23 bp):
TACCCTACAGGGATATTTCGGTA
Found at i:74384656 original size:50 final size:49
Alignment explanation
Indices: 74384524--74384678 Score: 168
Period size: 50 Copynumber: 3.0 Consensus size: 49
74384514 TTAGTAATCC
* * * *
74384524 TACCCTATAGGGGTATTTCGATATTTCTACTCTATAAGGGTATTTCGATAA
1 TACCCTACAGGGGTATTTCGATATTTCTACCCTA-CAGGGTATTTCGGT-A
* *
74384575 TTCTACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGATATTTCGGTA
1 ---TACCCTACAGGGGTATTTCGA-TATTTCTACCCTACAGGG-TATTTCGGTA
*
74384628 TACCCTACAGGGATATTTCGATATTTCTACCCTACAGGGGTATTTCGGTA
1 TACCCTACAGGGGTATTTCGATATTTCTACCCTACA-GGGTATTTCGGTA
74384678 T
1 T
74384679 TTCTACCTTA
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
50 42 0.48
51 4 0.05
53 6 0.07
54 36 0.41
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (49 bp):
TACCCTACAGGGGTATTTCGATATTTCTACCCTACAGGGTATTTCGGTA
Found at i:74384669 original size:77 final size:76
Alignment explanation
Indices: 74384479--74384704 Score: 238
Period size: 77 Copynumber: 2.9 Consensus size: 76
74384469 TTACCCCATA
* * * * * * * *
74384479 AGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTTAGTAATCCTACCCTATAGGGGTATTTCG
1 AGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG
* * *
74384544 ATATTTCTACTCTATA
66 GTA----TACCCTA-C
*
74384560 AGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC-AGGGATATTTC
1 AGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGG-TATTTC
74384624 GGTATACCCTAC
65 GGTATACCCTAC
* * * *
74384636 AGGGATATTTCGATATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTC
1 AGGG-TATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
74384701 GGTA
65 GGTA
74384705 ATTTTATAAA
Statistics
Matches: 127, Mismatches: 15, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
76 4 0.03
77 60 0.47
78 4 0.03
80 3 0.02
81 56 0.44
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (76 bp):
AGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG
GTATACCCTAC
Found at i:74384706 original size:104 final size:106
Alignment explanation
Indices: 74384464--74384707 Score: 278
Period size: 104 Copynumber: 2.3 Consensus size: 106
74384454 GGTAAAATGG
* * * * * *
74384464 TAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTTAGTAATCCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAA--CTACCC
* * * *
74384529 TATAGGGGTATTTCGATATTTCTACTCTATAAGGGTATTTCGA
64 TACAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGA
* ** *
74384572 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGG-GATATTTCGGT-A-TACCCT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGAG-TATTTCAGTAACTACCCT
* *
74384634 ACAGGGATATTTCGATATTTCTACCCTACAGGGGTATTTCGG
65 ACAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGA
* *
74384676 TATTTCTACCTTACAAGGGTATTTCGGTAATT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATT
74384708 TTATAAATCG
Statistics
Matches: 114, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
104 69 0.61
107 2 0.02
108 43 0.38
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (106 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAACTACCCTA
CAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGA
Found at i:74384721 original size:27 final size:27
Alignment explanation
Indices: 74384691--74384808 Score: 94
Period size: 27 Copynumber: 4.4 Consensus size: 27
74384681 CTACCTTACA
*
74384691 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * ** *
74384718 AGGGTAAAACGGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
74384745 AGGGTACTTT-GGTAATTTTACAAGTTG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** **
74384772 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
74384799 AGGGTATTTC
1 AGGGTATTTC
74384809 TATAAAGCCC
Statistics
Matches: 70, Mismatches: 19, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
26 3 0.04
27 67 0.96
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:74384731 original size:104 final size:104
Alignment explanation
Indices: 74384524--74384731 Score: 222
Period size: 104 Copynumber: 2.0 Consensus size: 104
74384514 TTAGTAATCC
* * * * *
74384524 TACCCTATAGGGGTATTTCGATATTTCTACTCTATAAGGGTATTTCGATAATTCTACCCTACAGG
1 TACCCTACAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAG
* *** ***
74384589 GGTATTTTAGTAATTCTACCCTACAGGGATATTTCGGTA
66 GGTATTTCAGTAATTCTAAAATACAGGGATAAAACGGTA
* * * *
74384628 TACCCTACAGGGATATTTCGATATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTACAAG
1 TACCCTACAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAG
* *
74384693 GGTATTTCGGTAATTTTATAAAT-CGAGGG-TAAAACGGTA
66 GGTATTTCAGTAATTCTA-AAATAC-AGGGATAAAACGGTA
74384732 ATTCTGTAAA
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
104 79 0.94
105 5 0.06
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (104 bp):
TACCCTACAGGGATATTTCGATATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAG
GGTATTTCAGTAATTCTAAAATACAGGGATAAAACGGTA
Found at i:74387432 original size:59 final size:59
Alignment explanation
Indices: 74387368--74387490 Score: 221
Period size: 59 Copynumber: 2.1 Consensus size: 59
74387358 ATGATGATAA
74387368 AAAAAGAAAAAGAAAG-AAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAG-AAAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
*
74387427 AAAAAGAAGAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
1 AAAAAGAAAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
74387486 AAAAA
1 AAAAA
74387491 AGAAGGAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
58 8 0.13
59 54 0.87
ACGTcount: A:0.54, C:0.10, G:0.20, T:0.16
Consensus pattern (59 bp):
AAAAAGAAAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAG
Found at i:74389539 original size:47 final size:47
Alignment explanation
Indices: 74389487--74389673 Score: 295
Period size: 47 Copynumber: 4.0 Consensus size: 47
74389477 TTAGGATTTT
74389487 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
74389534 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
74389581 AATGTGATGAACGT-AAGCATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-CATGCATATATGTGATAAGGCCGAATGGCC
* * * *
74389628 AATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74389674 TAGTGTGAAA
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 2 0.02
47 124 0.97
48 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:74389637 original size:25 final size:25
Alignment explanation
Indices: 74389562--74389637 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 25
74389552 ATGCATATAT
74389562 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * *** *
74389587 ATGA-ACGTAAGCAT-G-CATATGT-
1 GTGATAAGGCCGAATGGCCA-ATGTG
74389609 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
74389634 GTGA
1 GTGA
74389638 ATATGAACAT
Statistics
Matches: 34, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
22 5 0.15
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.22
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:74389909 original size:37 final size:36
Alignment explanation
Indices: 74389836--74389978 Score: 189
Period size: 37 Copynumber: 3.9 Consensus size: 36
74389826 GGAAATATAT
*
74389836 TCCGGGTGAGACCTGATGACTAC-TGTGGAGATTATG
1 TCCGGGTAAGACC-GATGACTACGTGTGGAGATTATG
* *
74389872 TCTGGGTAAGACACGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGAC-CGATGACTACGTGTGGAGATTATG
*
74389909 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
* *
74389946 TCCGGGTAAGATCCGATAACTTCGTGTGGAGAT
1 TCCGGGTAAGA-CCGATGACTACGTGTGGAGAT
74389979 ATCGTCTGAG
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
36 19 0.20
37 75 0.79
38 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.27
Consensus pattern (36 bp):
TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
Found at i:74390875 original size:27 final size:27
Alignment explanation
Indices: 74390843--74391011 Score: 230
Period size: 27 Copynumber: 6.3 Consensus size: 27
74390833 TACAATTTCA
* *
74390843 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
74390870 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * *
74390897 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
74390924 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * * *
74390951 GTGATTTTATAAACCAAGAGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
*
74390978 GTAATTTTACAAACCAGAGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
74391005 GTAATTT
1 GTAATTT
74391012 GGTAAACTAA
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:74390928 original size:54 final size:54
Alignment explanation
Indices: 74390860--74391011 Score: 259
Period size: 54 Copynumber: 2.8 Consensus size: 54
74390850 CACAAATCAG
* *
74390860 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
74390914 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* *
74390968 GAGTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
74391012 GGTAAACTAA
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:74396616 original size:27 final size:27
Alignment explanation
Indices: 74396586--74396644 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
74396576 TTAGTTTACC
* *
74396586 AATTA-CAGAAATGCCCTCGATTTGTAA
1 AATTACCA-AAATACCCTCGATTTATAA
* *
74396613 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAATACCCTCGATTTATAA
74396640 AATTA
1 AATTA
74396645 TTATTTTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTATAA
Found at i:74396663 original size:27 final size:27
Alignment explanation
Indices: 74396631--74396714 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
74396621 AAGTACCCTC
74396631 GATTTATAGAATTATTATTTTAACCTT
1 GATTTATAGAATTATTATTTTAACCTT
* * * *
74396658 GTTTTAT-GAATTACTGTTTTACCCTT
1 GATTTATAGAATTATTATTTTAACCTT
* * ** *
74396684 GATTTACAAAATTATCGTTTTACCCTT
1 GATTTATAGAATTATTATTTTAACCTT
74396711 GATT
1 GATT
74396715 GTGAAATTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.45
27 26 0.55
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (27 bp):
GATTTATAGAATTATTATTTTAACCTT
Found at i:74396677 original size:26 final size:27
Alignment explanation
Indices: 74396631--74396689 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
74396621 AAGTACCCTC
*
74396631 GATTTATAGAATTATTATTTTAACCTT
1 GATTTATAGAATTACTATTTTAACCTT
* * *
74396658 GTTTTAT-GAATTACTGTTTTACCCTT
1 GATTTATAGAATTACTATTTTAACCTT
74396684 GATTTA
1 GATTTA
74396690 CAAAATTATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (27 bp):
GATTTATAGAATTACTATTTTAACCTT
Found at i:74396776 original size:27 final size:27
Alignment explanation
Indices: 74396746--74396844 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
74396736 TATAGGGTAT
74396746 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
74396773 AATTACCAAAATACCACTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
74396800 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
74396827 AATTACAAAAATACCCCT
1 AATTACCAAAATACCCCT
74396845 GATTTACACA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.05
27 53 0.88
28 4 0.07
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:74396787 original size:54 final size:54
Alignment explanation
Indices: 74396713--74396844 Score: 128
Period size: 54 Copynumber: 2.4 Consensus size: 54
74396703 TTACCCTTGA
* ** *
74396713 TTGTGAAATTACTGAAATACCCCTATAGG-GTAT-AATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACAAAAATACCCCT-T-GGTGTATAAATTACCAAAATACCCTC-AAT
* * * *
74396767 TTGTAAAATTACCAAAATACCAC-TGGTTTATAAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACAAAAATACCCCTTGGTGTAT-AAATTACCAAAATACCCTCAAT
74396821 TTGTAAAATTACAAAAATACCCCT
1 TTGTAAAATTACAAAAATACCCCT
74396845 GATTTACACA
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
51 2 0.03
52 4 0.06
54 57 0.89
55 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACAAAAATACCCCTTGGTGTATAAATTACCAAAATACCCTCAAT
Found at i:74396858 original size:54 final size:55
Alignment explanation
Indices: 74396746--74396926 Score: 170
Period size: 54 Copynumber: 3.3 Consensus size: 55
74396736 TATAGGGTAT
* * * * *
74396746 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTATAA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
* *
74396800 AATTACCGAAATACCCTC-AATTTGTAAAATTACAAAAATACCCCTGATTTACAC
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
** * * * * * *
74396854 AATTATAGAAATACCCT-TGACTTTCTAAAAATTATAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCTCT-AATTTGT-AAAATTACAAAAATACCACTGATTTACAA
**
74396910 AATTATTGAAATACCCT
1 AATTACCGAAATACCCT
74396927 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 60 0.57
55 6 0.06
56 39 0.37
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACAAAAATACCACTGATTTACAA
Found at i:74396890 original size:29 final size:27
Alignment explanation
Indices: 74396781--74396932 Score: 110
Period size: 27 Copynumber: 5.6 Consensus size: 27
74396771 AAAATTACCA
* **
74396781 AAATACCAC-TGGTTTATAAAATTACCG
1 AAATACC-CTTGGTTTACAAAATTATAG
*** ** * *
74396808 AAATACCCTCAATTTGTAAAATTACAA
1 AAATACCCTTGGTTTACAAAATTATAG
* * *
74396835 AAATACCCCTGATTTACACAATTATAG
1 AAATACCCTTGGTTTACAAAATTATAG
*
74396862 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
* *
74396891 AAATACCATTGGTTTACAAAATTATTG
1 AAATACCCTTGGTTTACAAAATTATAG
74396918 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
74396933 GTAGATTTAC
Statistics
Matches: 99, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.01
27 72 0.73
28 6 0.06
29 20 0.20
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:74396907 original size:56 final size:55
Alignment explanation
Indices: 74396770--74396928 Score: 176
Period size: 56 Copynumber: 2.9 Consensus size: 55
74396760 CCCTAGTTTG
* * ** * *
74396770 TAAAATTACCAAAATACCACTGGTTTATAAAATTACCGAAATACCC-TCAATTTG
1 TAAAATTACAAAAATACCACTGGTTTACAAAATTATAGAAATACCCTTGAATTTC
* * * *
74396824 TAAAATTACAAAAATACCCCTGATTTACACAATTATAGAAATACCCTTGACTTTC
1 TAAAATTACAAAAATACCACTGGTTTACAAAATTATAGAAATACCCTTGAATTTC
* * * *
74396879 TAAAAATTATAGAAATACCATTGGTTTACAAAATTATTGAAATACCCTTG
1 T-AAAATTACAAAAATACCACTGGTTTACAAAATTATAGAAATACCCTTG
74396929 GTTTGTAGAT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 39 0.45
55 6 0.07
56 41 0.48
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (55 bp):
TAAAATTACAAAAATACCACTGGTTTACAAAATTATAGAAATACCCTTGAATTTC
Found at i:74397859 original size:25 final size:25
Alignment explanation
Indices: 74397831--74397900 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
74397821 AGGAAGTGCT
* *
74397831 AAAAGGGCTATACCCCAGTTTACCG
1 AAAAGGGCTTTACCCCAGTTTACCA
* * * *
74397856 AAAAGGGTTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTACCCCAGTTTACCA
*
74397881 AAAAGGGCTTTTCCCCAGTT
1 AAAAGGGCTTTACCCCAGTT
74397901 ATTAAAAGAG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTACCCCAGTTTACCA
Found at i:74398172 original size:31 final size:30
Alignment explanation
Indices: 74398120--74398202 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
74398110 CGCTTACAGT
74398120 AAAGGCTTCGG-CCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
74398150 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
74398181 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
74398203 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 16 0.31
31 35 0.69
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:74400621 original size:27 final size:27
Alignment explanation
Indices: 74400536--74400627 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
74400526 ATTACCAAAG
* * * *
74400536 TACCTTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
74400563 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
74400590 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
74400617 TACCCTTGATT
1 TACCCTCGATT
74400628 ATGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.45
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:74400649 original size:27 final size:27
Alignment explanation
Indices: 74400626--74400757 Score: 117
Period size: 27 Copynumber: 4.9 Consensus size: 27
74400616 TTACCCTTGA
** *
74400626 TTATGAAATTACTGAAATACCCCTATAGG
1 TTATGAAATTACCAAAATACCCC--TAGT
*
74400655 GTA-GAA-TTACCAAAATACCCCTAGT
1 TTATGAAATTACCAAAATACCCCTAGT
* * *
74400680 TTGTAAAATTACCAAAATACCACTAGT
1 TTATGAAATTACCAAAATACCCCTAGT
* *
74400707 TTATGAAATTACCGAAATA-CCCTCAAT
1 TTATGAAATTACCAAAATACCCCT-AGT
* *
74400734 TTGTAAAATTACCAAAATACCCCT
1 TTATGAAATTACCAAAATACCCCT
74400758 GATTTACACA
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
25 4 0.05
26 5 0.06
27 65 0.78
28 7 0.08
29 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TTATGAAATTACCAAAATACCCCTAGT
Found at i:74400700 original size:54 final size:55
Alignment explanation
Indices: 74400631--74400757 Score: 145
Period size: 54 Copynumber: 2.3 Consensus size: 55
74400621 CTTGATTATG
** *
74400631 AAATTACTGAAATACCCCTATAGGGTA-G-AATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCT-TAGGGTATGAAATTACCAAAATACCCTC-AATTTGTA
* ** *
74400685 AAATTACCAAAATACCAC-TAGTTTATGAAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCCTTAGGGTATGAAATTACCAAAATACCCTCAATTTGTA
74400739 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
74400758 GATTTACACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
52 5 0.08
53 1 0.02
54 54 0.89
55 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (55 bp):
AAATTACCAAAATACCCCTTAGGGTATGAAATTACCAAAATACCCTCAATTTGTA
Found at i:74400762 original size:27 final size:27
Alignment explanation
Indices: 74400659--74400757 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
74400649 TATAGGGTAG
74400659 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
74400686 AATTACCAAAATACCACTAGTTTATGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
74400713 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
74400740 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
74400758 GATTTACACA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.05
27 54 0.89
28 4 0.07
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:74400771 original size:54 final size:55
Alignment explanation
Indices: 74400659--74400839 Score: 151
Period size: 54 Copynumber: 3.3 Consensus size: 55
74400649 TATAGGGTAG
* * *
74400659 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTATGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTATCA
*
74400713 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GATTTA-CA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAG-TTTATCA
** * * * * *
74400766 CAATTATAGAAATACCCT-TGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTA-CAA
1 -AATTACCGAAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTAGTTTATC-A
*
74400823 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
74400840 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
53 2 0.02
54 59 0.56
55 7 0.07
56 35 0.33
57 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTATCA
Found at i:74400778 original size:27 final size:27
Alignment explanation
Indices: 74400748--74400841 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 27
74400738 AAAATTACCA
* *
74400748 AAATACCCCTGATTTACACAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
74400775 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
74400804 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
74400831 AAATACCCTTG
1 AAATACCCTTG
74400842 GTTTGTAGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
27 30 0.53
28 7 0.12
29 20 0.35
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:74401809 original size:25 final size:25
Alignment explanation
Indices: 74401771--74401840 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
74401761 AGGAAGTGCT
* * *
74401771 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
74401796 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
74401821 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74401841 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:74401842 original size:24 final size:24
Alignment explanation
Indices: 74401771--74401867 Score: 88
Period size: 25 Copynumber: 3.9 Consensus size: 24
74401761 AGGAAGTGCT
* * *
74401771 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTATGCCCCAG-TTATCA
* *
74401796 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTATGCCCC-AGTTATCA
* *
74401821 AAAAGGGCTTTGCCCCAGTTAT-T
1 AAAAGGGCTATGCCCCAGTTATCA
74401844 AAAAGAGGCTATGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
74401868 ATGATAAAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.08
24 13 0.21
25 42 0.69
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTATCA
Found at i:74401882 original size:28 final size:24
Alignment explanation
Indices: 74401831--74401885 Score: 65
Period size: 28 Copynumber: 2.1 Consensus size: 24
74401821 AAAAGGGCTT
*
74401831 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATTAAAAGAAGCTA
74401855 TGCCTCCAGTTATATGATAAAGAAGCTA
1 TGCC-CCAGTTAT-T-A-AAAGAAGCTA
74401883 TGC
1 TGC
74401886 TGCCAGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 4 0.15
25 8 0.31
26 1 0.04
27 1 0.04
28 12 0.46
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (24 bp):
TGCCCCAGTTATTAAAAGAAGCTA
Found at i:74401921 original size:19 final size:19
Alignment explanation
Indices: 74401897--74401938 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
74401887 GCCAGTGGAA
74401897 AGTTTGGTTGGGTGGGTCG
1 AGTTTGGTTGGGTGGGTCG
74401916 AGTTTGGTTGGGTGGGTCG
1 AGTTTGGTTGGGTGGGTCG
74401935 AGTT
1 AGTT
74401939 ATTCCGCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.07, C:0.05, G:0.50, T:0.38
Consensus pattern (19 bp):
AGTTTGGTTGGGTGGGTCG
Found at i:74402128 original size:31 final size:31
Alignment explanation
Indices: 74402079--74402161 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
74402069 CGCTCACAGT
74402079 AAAGGCTTCAG-CCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* * *
74402109 AAAGGCTTCGGCCCAGTGATGTGTTTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
74402140 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
74402162 GCGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 14 0.30
31 33 0.70
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:74407954 original size:48 final size:48
Alignment explanation
Indices: 74407850--74408181 Score: 228
Period size: 48 Copynumber: 6.9 Consensus size: 48
74407840 ACGACATGTG
* * * *
74407850 AGTATTGAGATCACGTATAAGATCATATATGGGATATGGCATC-GACATC
1 AGTA-TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAG-CATC
* *
74407899 GAG-ATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGTATC
1 -AGTATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAGCATC
* * * *
74407947 AGTATGAGATCCCATGTAAGTCCATATCTTGGATATAGCATCAGCATC
1 AGTATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAGCATC
** * * **
74407995 -GATAAAAGATCCCGTATAAGATCACGTCTGGG-TCATGGCATCAGCATC
1 AG-TATGAGATCCCGTGTAAGACCATATCTGGGAT-ATGGCATCAGCATC
* * * * **
74408043 AGTATGAGATCCCTTGCAAGACCATATCTGGAAAATGGCATTGGCATC
1 AGTATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAGCATC
* * ** * * * *
74408091 -GATAGGAGGTCCTATATAAGACCATGTATGGGACATGGCATCAGCA-C
1 AG-TATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAGCATC
* * * *
74408138 CGTTATGAGA-CTTCGTGTAAGACCATAGCTGGGCTATTGGCATC
1 AG-TATGAGATC-CCGTGTAAGACCATATCTGGGATA-TGGCATC
74408182 GATGTGAGAT
Statistics
Matches: 215, Mismatches: 57, Indels: 21
0.73 0.19 0.07
Matches are distributed among these distances:
47 7 0.03
48 196 0.91
49 10 0.05
50 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (48 bp):
AGTATGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAGCATC
Found at i:74408090 original size:96 final size:96
Alignment explanation
Indices: 74407905--74408136 Score: 252
Period size: 96 Copynumber: 2.4 Consensus size: 96
74407895 CATCGAGATG
* * * * * *
74407905 AGATCCCGTGTAAGACCATATCTGGGAT-ATGGCATCGGTATCAGTATGAGATCCCATGTAAGTC
1 AGATCCCGTATAAGACCATGTCTGGG-TCATGGCATCAGCATCAGTATGAGATCCCATGCAAGAC
*
74407969 CATATCTTGGATATAGCATCAGCATCGATAAA
65 CATATCTTGGAAATAGCATCAGCATCGATAAA
* * *
74408001 AGATCCCGTATAAGATCACGTCTGGGTCATGGCATCAGCATCAGTATGAGATCCCTTGCAAGACC
1 AGATCCCGTATAAGACCATGTCTGGGTCATGGCATCAGCATCAGTATGAGATCCCATGCAAGACC
* ** **
74408066 ATATC-TGGAAAATGGCATTGGCATCGATAGG
66 ATATCTTGG-AAATAGCATCAGCATCGATAAA
* ** * *
74408097 AGGTCCTATATAAGACCATGTATGGGACATGGCATCAGCA
1 AGATCCCGTATAAGACCATGTCTGGGTCATGGCATCAGCA
74408137 CCGTTATGAG
Statistics
Matches: 112, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
95 4 0.04
96 108 0.96
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (96 bp):
AGATCCCGTATAAGACCATGTCTGGGTCATGGCATCAGCATCAGTATGAGATCCCATGCAAGACC
ATATCTTGGAAATAGCATCAGCATCGATAAA
Found at i:74408132 original size:144 final size:144
Alignment explanation
Indices: 74407857--74408136 Score: 316
Period size: 144 Copynumber: 1.9 Consensus size: 144
74407847 GTGAGTATTG
* *
74407857 AGATCACGTATAAGATCATATATGGGATATGGCATCGACATCGAGATGAGATCCCGTGTAAGACC
1 AGATCACGTATAAGATCACATATGGGATATGGCATCGACATCGAGATGAGATCCCGTGCAAGACC
* * * * * * * * *
74407922 ATATCTGGGATATGGCATCGGTATCAGTATGAGATCCCATGTAAGTCCATATCTTGGATATAGCA
66 ATATCTGGAAAATGGCATCGGCATCAGTAGGAGATCCCATATAAGACCATATATGGGACATAGCA
74407987 TCAGCATCGATAAA
131 TCAGCATCGATAAA
* * * *
74408001 AGATCCCGTATAAGATCACGTCTGGG-TCATGGCATC-AGCATC-AGTATGAGATCCCTTGCAAG
1 AGATCACGTATAAGATCACATATGGGAT-ATGGCATCGA-CATCGAG-ATGAGATCCCGTGCAAG
* * * *
74408063 ACCATATCTGGAAAATGGCATTGGCATC-GATAGGAGGTCCTATATAAGACCATGTATGGGACAT
63 ACCATATCTGGAAAATGGCATCGGCATCAG-TAGGAGATCCCATATAAGACCATATATGGGACAT
*
74408127 GGCATCAGCA
127 AGCATCAGCA
74408137 CCGTTATGAG
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
143 5 0.04
144 107 0.96
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (144 bp):
AGATCACGTATAAGATCACATATGGGATATGGCATCGACATCGAGATGAGATCCCGTGCAAGACC
ATATCTGGAAAATGGCATCGGCATCAGTAGGAGATCCCATATAAGACCATATATGGGACATAGCA
TCAGCATCGATAAA
Found at i:74413623 original size:55 final size:55
Alignment explanation
Indices: 74413514--74413632 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
74413504 CTGCCAAAAC
** *
74413514 AACACGGGCGTGCGACACGGCCATGCCTTGAAATCGTGGCCAAACTTGTCAAATT
1 AACACGGGCGTGCGACACGGCCATGCCAAGAAATCGTGGCCAAACCTGTCAAATT
* * * ** *
74413569 AACACGGGCGTGCGACACGTCCGTGCCAAGCAA-CTGTGGTTAAACCTGTTAAATT
1 AACACGGGCGTGCGACACGGCCATGCCAAGAAATC-GTGGCCAAACCTGTCAAATT
74413624 AACACGGGC
1 AACACGGGC
74413633 ATGGGAGAAG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 1 0.02
55 53 0.98
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (55 bp):
AACACGGGCGTGCGACACGGCCATGCCAAGAAATCGTGGCCAAACCTGTCAAATT
Found at i:74421174 original size:29 final size:29
Alignment explanation
Indices: 74421139--74421238 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 29
74421129 GTGACGAGAT
* *
74421139 TGGCACTGAGTGTACGAGCTTGAAATGTA
1 TGGCACTAAGTGTACGAGCTTGAAATATA
* * * *
74421168 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTACGAGCTTGAAATATA
* * * *
74421197 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTACGAGCTTGAAAT-ATA
*
74421226 TGGCACTTAGTGT
1 TGGCACTAAGTGT
74421239 GCGTGATCGA
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 2 0.04
29 54 0.96
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTACGAGCTTGAAATATA
Found at i:74422887 original size:27 final size:27
Alignment explanation
Indices: 74422846--74422899 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
74422836 TGTCATGTGA
* *
74422846 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
74422873 AATTGAAT-GCTAAATTACTATTACATG
1 AATTGAATGGC-AAATTACTATTACATG
74422900 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:74423218 original size:49 final size:49
Alignment explanation
Indices: 74423146--74423323 Score: 221
Period size: 49 Copynumber: 3.6 Consensus size: 49
74423136 TCTACAGTGA
*
74423146 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * **
74423195 GGTCACATGTGTAATACTAAGTGCAGGCTATTATGCGTACCCAATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * *
74423245 CGATCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
74423295 GGTCGCATGTTTAGTACTAAGTGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
74423324 GCTATGCATA
Statistics
Matches: 104, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 63 0.61
50 4 0.04
51 37 0.36
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:74423342 original size:100 final size:100
Alignment explanation
Indices: 74423148--74423335 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
74423138 TACAGTGAGG
* *
74423148 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAATACT
1 TCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAATACT
* *
74423213 AAGTGCAGGCTATTATGCGTACCCAATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCCAATAACTTCGA
* * *
74423248 TCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCATGTTTAGTACT
1 TCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAATACT
*
74423313 AAGTGCAGGCTGCTATGCATACC
66 AAGTGCAGGCTACTATGCATACC
74423336 AGATAACCTT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAATACT
AAGTGCAGGCTACTATGCATACCCAATAACTTCGA
Found at i:74425871 original size:22 final size:23
Alignment explanation
Indices: 74425832--74425875 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
74425822 AAAATCCTAC
*
74425832 CCATCCATCCTCTACACTCCATT
1 CCATCCAGCCTCTACACTCCATT
74425855 CCATCCAGCC-CTACACTCCAT
1 CCATCCAGCCTCTACACTCCAT
74425876 GTGGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.23, C:0.50, G:0.02, T:0.25
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCATT
Found at i:74425967 original size:21 final size:21
Alignment explanation
Indices: 74425942--74425985 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
74425932 CACTATTCAA
*
74425942 TAATTGTAGAAGAGCTTCCAG
1 TAATTGTAGAAGAGCTACCAG
*
74425963 TAATTGTAGGAGAGCTACCAG
1 TAATTGTAGAAGAGCTACCAG
74425984 TA
1 TA
74425986 CGGTACACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (21 bp):
TAATTGTAGAAGAGCTACCAG
Found at i:74437942 original size:40 final size:40
Alignment explanation
Indices: 74437897--74438045 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
74437887 TATAACCATA
* *
74437897 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* * *
74437937 TGCACAATTGCCTTCGAGTCTTAACCCGGATATAACAACT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* * *
74437977 CGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACT
1 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACT
* * * *
74438017 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAATTGCCTTCGGGTCTTAACCCGG
74438046 GTATCATTCA
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 90 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACT
Found at i:74445945 original size:40 final size:40
Alignment explanation
Indices: 74445871--74446048 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
74445861 GAGTCACGTA
** *
74445871 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
74445910 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74445950 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
74445990 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74446030 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74446049 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:74451456 original size:35 final size:35
Alignment explanation
Indices: 74451416--74451486 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
74451406 CTTGTTTATA
74451416 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
74451451 ACCTTACCACATCCTGGTCACTTAATGAACACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACACATC
74451486 A
1 A
74451487 TTCACATAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.25
Consensus pattern (35 bp):
ACCTTACCACATCCTGGTCACTTAATGAACACATC
Found at i:74454872 original size:13 final size:13
Alignment explanation
Indices: 74454854--74454878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74454844 AGGCCGTGTG
74454854 AGGGACACGGGCT
1 AGGGACACGGGCT
74454867 AGGGACACGGGC
1 AGGGACACGGGC
74454879 GTGTGCTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
AGGGACACGGGCT
Found at i:74458287 original size:30 final size:30
Alignment explanation
Indices: 74458253--74458310 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74458243 CCGAGCCTAG
*
74458253 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTATAAATATGCAAAAGTTTAA
* * *
74458283 GGGCAAAATTATAATTTTGCAAAAGTTT
1 GGGCAAAAGTATAAATATGCAAAAGTTT
74458311 TAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTATAAATATGCAAAAGTTTAA
Found at i:74458928 original size:31 final size:31
Alignment explanation
Indices: 74458893--74458954 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
74458883 ATGTTTGTGG
*
74458893 CTAATTACTTGATTAGTCAAATTGTTGGAAA
1 CTAATTACTTGATTAGTCAAATTGTTAGAAA
*
74458924 CTAATTACTTGATTAGTGAAATTGTTAGAAA
1 CTAATTACTTGATTAGTCAAATTGTTAGAAA
74458955 AGAGAGAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (31 bp):
CTAATTACTTGATTAGTCAAATTGTTAGAAA
Found at i:74462839 original size:40 final size:40
Alignment explanation
Indices: 74462598--74462825 Score: 370
Period size: 40 Copynumber: 5.7 Consensus size: 40
74462588 ATTCGGATTG
* **
74462598 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
74462638 A-ATTCCGAGCTAAG-CCCGAAGGCATTTGTGCGTGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74462677 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74462717 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74462757 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74462797 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74462826 AGCTAGTAGC
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 33 0.19
40 143 0.81
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74463124 original size:22 final size:21
Alignment explanation
Indices: 74463083--74463125 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
74463073 GAATGTGCAT
74463083 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
74463105 ATATGAATGTTATACC-TTAGC
1 ATATGAA-GTTAT-CCATTAGC
74463126 TGAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 12 0.63
23 5 0.26
24 2 0.11
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:74472537 original size:40 final size:40
Alignment explanation
Indices: 74472432--74472638 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
74472422 GGATTGATAA
* **
74472432 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
74472472 CCGAGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74472511 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74472551 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74472591 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
74472631 CC-GGCTAA
1 CCGGGCTAA
74472639 ACTCTAAAGG
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 41 0.26
40 114 0.74
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74472914 original size:22 final size:21
Alignment explanation
Indices: 74472873--74472916 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
74472863 GAATGTGCAT
74472873 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
74472895 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
74472917 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:74475762 original size:13 final size:13
Alignment explanation
Indices: 74475744--74475768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74475734 AGTAATCTCG
74475744 CACGGGCGTGTCA
1 CACGGGCGTGTCA
74475757 CACGGGCGTGTC
1 CACGGGCGTGTC
74475769 CCTGTCAAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:74478951 original size:31 final size:31
Alignment explanation
Indices: 74478908--74478991 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
74478898 TTAGTCTTGA
74478908 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
74478938 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
74478969 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
74478992 ACTGTAAAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:74479278 original size:26 final size:26
Alignment explanation
Indices: 74479189--74479493 Score: 330
Period size: 26 Copynumber: 11.8 Consensus size: 26
74479179 TTTATCATAT
*
74479189 AACTGGAGGCCTAA-CCTCTTTT-AAT-
1 AACTGG-GGCATAAGCC-CTTTTCAATA
* **
74479214 AACTGGGGCAAAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
74479239 AAATGGGGCGTAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
** ** **
74479265 AACTAAGGCATAAGCCCTAATCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
74479291 AATTGGGGCATAAGCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
74479317 AACTGGGGCATAATCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * *
74479343 AACTGAGGCATAAACCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
74479369 AACTGGGGCATAAGCCCATTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
74479395 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
74479421 AACTAGGGCATAAGCTCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
74479447 AACTAGGGCATAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
74479473 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
74479494 GCACTTCCTC
Statistics
Matches: 231, Mismatches: 45, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
23 3 0.01
24 7 0.03
25 22 0.10
26 199 0.86
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:74480452 original size:27 final size:27
Alignment explanation
Indices: 74480400--74480635 Score: 215
Period size: 27 Copynumber: 8.7 Consensus size: 27
74480390 TTCATCCTAC
* * * *
74480400 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* **
74480427 AAGGGTATTTTAGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
74480454 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
** **
74480482 CAAGGGTATTTTTTTAATTTTGTAAA-T
1 -AAGGGTATTTTGGTAATTTTACAAACT
** *
74480509 CCGGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
* *
74480537 GAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
74480564 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
74480591 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
74480618 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
74480636 CTATCCTACA
Statistics
Matches: 175, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
27 145 0.83
28 18 0.10
29 12 0.07
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:74480569 original size:54 final size:54
Alignment explanation
Indices: 74480511--74480668 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
74480501 TTGTAAATCC
*
74480511 GGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTTACAAACTA
*
74480565 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACTA
* ** * *
74480619 GGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTTACAA
74480669 TCGAAGGTAA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
54 89 0.95
55 5 0.05
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAACTA
Found at i:74480649 original size:81 final size:81
Alignment explanation
Indices: 74480511--74480668 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 81
74480501 TTGTAAATCC
* * **
74480511 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCA
*
74480576 GTAATTTTACAAACTA
66 GTAATTTCACAAACTA
* **
74480592 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTT
1 GGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTT
74480655 CAGTAATTTCACAA
64 CAGTAATTTCACAA
74480669 TCGAAGGTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 62 0.93
82 5 0.07
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCA
GTAATTTCACAAACTA
Found at i:74480654 original size:27 final size:27
Alignment explanation
Indices: 74480511--74480635 Score: 216
Period size: 27 Copynumber: 4.6 Consensus size: 27
74480501 TTGTAAATCC
*
74480511 GGGGTATTTTGGTAATTTTACAAA-TT
1 GGGGTATTTTGGTAATTTTACAAACTA
*
74480537 GAGGGTATTTCGGTAATTTTACAAACTA
1 G-GGGTATTTTGGTAATTTTACAAACTA
74480565 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
74480592 GGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTA
74480619 GGGGTATTTTGGTAATT
1 GGGGTATTTTGGTAATT
74480636 CTATCCTACA
Statistics
Matches: 94, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
26 1 0.01
27 91 0.97
28 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAACTA
Found at i:74480707 original size:27 final size:27
Alignment explanation
Indices: 74480667--74480864 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
74480657 GTAATTTCAC
* * * *
74480667 AATCGAAGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
74480694 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* *
74480721 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
74480748 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
74480775 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
74480802 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
74480829 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
74480856 AATTGAGGG
1 AATCGAGGG
74480865 CTTTTTAGTA
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:74480741 original size:54 final size:54
Alignment explanation
Indices: 74480667--74480864 Score: 281
Period size: 54 Copynumber: 3.7 Consensus size: 54
74480657 GTAATTTCAC
* * * *
74480667 AATCGAAGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTCTGTA
* *
74480721 AATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
74480775 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * * * *
74480829 AATCAAGGGTAAAATGGTAATTTTACAAATTGAGGG
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGG
74480865 CTTTTTAGTA
Statistics
Matches: 130, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
54 129 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
Found at i:74483636 original size:40 final size:40
Alignment explanation
Indices: 74483581--74483737 Score: 174
Period size: 40 Copynumber: 3.9 Consensus size: 40
74483571 TGATACCCGC
* * *
74483581 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
*
74483621 GCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATATCCGG
1 GCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATATCCGG
* * * * *
74483661 GTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
* * *
74483701 GTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATC
74483738 TGGTTAAATC
Statistics
Matches: 98, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 90 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
Found at i:74483734 original size:80 final size:79
Alignment explanation
Indices: 74483583--74483754 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 79
74483573 ATACCCGCGC
* * * * *
74483583 TAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
74483648 TTGTTATATCCGGGT
66 TGGTTATAT-CGGGT
* * * **
74483663 TAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATT-GTGCTT
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGA
*
74483727 GTGGTTATATCTGGT
65 GTGGTTATATCGGGT
74483742 TAA-ATCCCGAAGG
1 TAAGA-CCCGAAGG
74483755 TACGTGACTC
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
79 15 0.19
80 59 0.76
81 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
TGGTTATATCGGGT
Found at i:74491814 original size:40 final size:40
Alignment explanation
Indices: 74491753--74491960 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
74491743 CATTGGAATG
* * *
74491753 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* **
74491793 ATATCCGGGCTAAGACTCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
74491833 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
74491873 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
74491913 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
74491953 ATATCCGG
1 ATATCCGG
74491961 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 134 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:74494857 original size:12 final size:12
Alignment explanation
Indices: 74494840--74494878 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
74494830 TCAGAGAGTT
*
74494840 ACACGGGGTAGG
1 ACACGGGCTAGG
*
74494852 ACACGGGCTGGG
1 ACACGGGCTAGG
*
74494864 ACACGGGCTGGG
1 ACACGGGCTAGG
74494876 ACA
1 ACA
74494879 TAGCCATGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (12 bp):
ACACGGGCTAGG
Found at i:74503219 original size:38 final size:38
Alignment explanation
Indices: 74503168--74503244 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
74503158 TCTAATAGCT
74503168 ATGGAACATTAAAGTGGAGGTCCTTATGTGGTAATTAG
1 ATGGAACATTAAAGTGGAGGTCCTTATGTGGTAATTAG
74503206 ATGGAACATTAAAGTGGAGGTCCTTATGTGGTAATTAG
1 ATGGAACATTAAAGTGGAGGTCCTTATGTGGTAATTAG
74503244 A
1 A
74503245 CCATTCGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (38 bp):
ATGGAACATTAAAGTGGAGGTCCTTATGTGGTAATTAG
Found at i:74506555 original size:42 final size:42
Alignment explanation
Indices: 74506447--74506616 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 42
74506437 CTCTGATATG
* * * *
74506447 TGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC-AATT
1 TGATTTCATGTAAGACCATATCTGGGACATTGGCATCGTATA
*
74506488 TGAGGTTTACGTGTAAGACCATATCTGGGACATTGGCATCGTATA
1 TGA--TTT-CATGTAAGACCATATCTGGGACATTGGCATCGTATA
* * * *
74506533 TGATTTCGTGTAAGACCCTATCTGGGATAGTGGCATCG-ATA
1 TGATTTCATGTAAGACCATATCTGGGACATTGGCATCGTATA
* ** * *
74506574 GTTGATTACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 --TGATTTCATGTAAGACCATATCTGGGACATTGGCATCGTAT
74506617 GAGCTTTTTG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
41 6 0.06
42 29 0.28
43 35 0.33
44 30 0.29
45 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATATCTGGGACATTGGCATCGTATA
Found at i:74508502 original size:45 final size:44
Alignment explanation
Indices: 74508451--74508583 Score: 116
Period size: 45 Copynumber: 3.0 Consensus size: 44
74508441 AGGATTTTCA
74508451 ATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * *
74508496 ATATGTGGTTACGTGTAAGACCATG-CTTGAGACATCGGCATCG-T
1 ATATGT-GTTTCGTGTAAGACCACGTC-TGGGACATTGGCATCGAT
* * *
74508540 AT-T-TGATTT-GTGTAAGACC-CTGTTTAGGACAATGGCATCGAT
1 ATATGTG-TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
74508582 AT
1 AT
74508584 GTGATTACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
41 24 0.34
42 6 0.08
43 1 0.01
44 4 0.06
45 33 0.46
46 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:74511720 original size:46 final size:46
Alignment explanation
Indices: 74511667--74511842 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
74511657 GATTTGGGCA
*
74511667 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
74511713 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
74511760 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
74511806 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74511843 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74511822 original size:93 final size:93
Alignment explanation
Indices: 74511663--74511835 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
74511653 CTAGGATTTG
* * *
74511663 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
74511728 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
74511756 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
74511821 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
74511836 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74517337 original size:46 final size:45
Alignment explanation
Indices: 74517174--74517346 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
74517164 GTTTGGGCAT
* *
74517174 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
74517219 CC-AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
74517263 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* *
74517311 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74517347 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 6 0.06
43 2 0.02
44 26 0.24
45 2 0.02
46 36 0.33
47 25 0.23
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:74520848 original size:67 final size:67
Alignment explanation
Indices: 74520774--74520920 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 67
74520764 CATCATGTGT
* * * *
74520774 ACAAGAGAGCTACAAGACATTATGATTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TATG--TAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCA
74520836 TGTAG
63 TGTAG
** * * *
74520841 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGACATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
74520906 AG
66 AG
74520908 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
74520921 GAGATAAACT
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 17 0.25
65 4 0.06
66 6 0.09
67 41 0.60
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACAAGACATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74522072 original size:2 final size:2
Alignment explanation
Indices: 74522065--74522095 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
74522055 TCATGACATG
74522065 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74522096 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74524372 original size:16 final size:18
Alignment explanation
Indices: 74524351--74524388 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
74524341 AAGGGAGAAT
74524351 AAAG-AAATG-GAAAAAA
1 AAAGAAAATGAGAAAAAA
74524367 AAAGAAAATGATGAAAAAA
1 AAAGAAAATGA-GAAAAAA
74524386 AAA
1 AAA
74524389 ATGGGTGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 5 0.26
19 10 0.53
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (18 bp):
AAAGAAAATGAGAAAAAA
Found at i:74525787 original size:30 final size:29
Alignment explanation
Indices: 74525726--74525828 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
74525716 AAAATTGTAC
* *
74525726 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74525755 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
74525785 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74525814 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74525829 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:74525791 original size:59 final size:59
Alignment explanation
Indices: 74525716--74525828 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
74525706 TGCAGGTTTA
*
74525716 AAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
1 AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
* * *
74525775 AAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCG
74525829 GATTCACTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (59 bp):
AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
Found at i:74528458 original size:40 final size:40
Alignment explanation
Indices: 74528396--74528613 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
74528386 AAGCCAAGTA
* * * *
74528396 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
74528435 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74528475 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74528515 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
74528555 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
74528595 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74528614 TTATCATCCA
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 146 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74529896 original size:20 final size:20
Alignment explanation
Indices: 74529871--74529911 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74529861 ACATGAGAGC
* *
74529871 CTTTCTTTTTTTTTTTTTTT
1 CTTTCTCTTTTCTTTTTTTT
74529891 CTTTCTCTTTTCTTTTTTTT
1 CTTTCTCTTTTCTTTTTTTT
74529911 C
1 C
74529912 ATCATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (20 bp):
CTTTCTCTTTTCTTTTTTTT
Found at i:74536457 original size:40 final size:40
Alignment explanation
Indices: 74536381--74536583 Score: 328
Period size: 40 Copynumber: 5.2 Consensus size: 40
74536371 TGCCTTGACA
74536381 TAGCCCGGATATAGTAACT--C-C-AATGCCTTCGGGACT
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
74536417 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
74536457 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
74536497 TAGCCCGGA-ATAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
* * *
74536536 TAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACT
1 TAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
74536576 TAGCCCGG
1 TAGCCCGG
74536584 TTATCATCCA
Statistics
Matches: 159, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
36 19 0.12
38 1 0.01
39 41 0.26
40 98 0.62
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
Found at i:74536529 original size:79 final size:78
Alignment explanation
Indices: 74536381--74536583 Score: 324
Period size: 79 Copynumber: 2.6 Consensus size: 78
74536371 TGCCTTGACA
74536381 TAGCCCGGATATAGTAACT-CC-AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TAGCCCGGATATAGTAACTGCCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
74536444 TGCCTTCGGGACT
66 TGCCTTCGGGACT
74536457 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACA
1 TAGCCCGGATATAGTAACT-GC-CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
74536521 AATGCCTTCGGGACT
64 AATGCCTTCGGGACT
*
74536536 TAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 TAGCCCGGATA-TAGTAACT-GC-CAAATGCCTTCGGGACTTAGCCCGG
74536584 TTATCATCCA
Statistics
Matches: 119, Mismatches: 3, Indels: 7
0.92 0.02 0.05
Matches are distributed among these distances:
76 19 0.16
78 2 0.02
79 74 0.62
80 24 0.20
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (78 bp):
TAGCCCGGATATAGTAACTGCCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
TGCCTTCGGGACT
Found at i:74543146 original size:30 final size:30
Alignment explanation
Indices: 74543112--74543169 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
74543102 TTTTCGAGCA
* * *
74543112 TAGGGGTAAAATGGTTATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
74543142 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
74543170 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:74543643 original size:46 final size:48
Alignment explanation
Indices: 74543510--74543779 Score: 233
Period size: 46 Copynumber: 5.7 Consensus size: 48
74543500 TTATATGTGT
* * *
74543510 GCCAGTGTAAGA-CATGTCTGGAACAT-GCATCGACCAC-ATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGA-GATGAGA
* *
74543556 GCCAATGTAAGACCATGTCTGGGACAT-GCATCGGCCT-CGAGATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTACGAGATG-AGA
*
74543603 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCTACGAGAT--GT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACGAGATGAGA
* * * *
74543647 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-ATGGATATGCGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTA-CGAGAT--GAGA
* * * *
74543697 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATGGTGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTACGA-GATGAGA
*
74543746 GCCAGTGTAAGACCATGTCCGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
74543780 GCAACTTATC
Statistics
Matches: 183, Mismatches: 23, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 46 0.25
47 35 0.19
48 5 0.03
49 34 0.19
50 33 0.18
51 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAGA
Found at i:74543709 original size:50 final size:49
Alignment explanation
Indices: 74543649--74543779 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 49
74543639 CGAGATGTGT
* * *
74543649 CAGTGTAAGACCATGTTTGGGACATGGCATCGACATGGATATGCGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAT-GGCGAGAGC
* * * * *
74543699 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGTGATAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATGGCGAGAGC
*
74543748 CAGTGTAAGACCATGTCCGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
74543780 GCAACTTATC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 36 0.51
50 35 0.49
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATGGCGAGAGC
Found at i:74543757 original size:99 final size:95
Alignment explanation
Indices: 74543510--74543779 Score: 300
Period size: 93 Copynumber: 2.9 Consensus size: 95
74543500 TTATATGTGT
* * * * * *
74543510 GCCAGTGTAAGACATGTCTGGAACATGCATCGACCAC-ATTATGAGAGCCAATGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCATGT
* * *
74543574 CTGGGACAT-GCATCGGCCTCGAGATGTAA
66 CTGGGACATGGCATCGACATCGAGATGGAA
* *
74543603 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGA-GATG-T-GTCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGATAGCCAGTGTAAGACCATG
* * *
74543664 TTTGGGACATGGCATCGACATGGATATGCGAGA
65 TCTGGGACATGGCATCGACATCGAGATG-GA-A
* *
74543697 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGTGATAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
*
74543762 GTCCGGGACATGGCATCG
64 GTCTGGGACATGGCATCG
74543780 GCAACTTATC
Statistics
Matches: 146, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
91 24 0.16
92 14 0.10
93 35 0.24
94 13 0.09
95 14 0.10
96 9 0.06
97 5 0.03
98 1 0.01
99 31 0.21
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (95 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATCGAGATGGAA
Found at i:74544607 original size:55 final size:55
Alignment explanation
Indices: 74544535--74544665 Score: 190
Period size: 55 Copynumber: 2.4 Consensus size: 55
74544525 CTAAAATTTG
* *
74544535 AAGTTAGTGTTGAACACGGGCAGGCCACACGGGCGTGTGTCATAGCCATGTTTTA
1 AAGTTAGTGTTGAACACGGGCAGGCCACACGGGCATGTGGCATAGCCATGTTTTA
* * * * *
74544590 AAGTCAGTGTTGTACACGAGCAGGCCACACGGGCATGTGGCATGGCCGTGTTTTA
1 AAGTTAGTGTTGAACACGGGCAGGCCACACGGGCATGTGGCATAGCCATGTTTTA
*
74544645 AAGTTAGTGTTGCACACGGGC
1 AAGTTAGTGTTGAACACGGGC
74544666 TAAGGGCATG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (55 bp):
AAGTTAGTGTTGAACACGGGCAGGCCACACGGGCATGTGGCATAGCCATGTTTTA
Found at i:74546059 original size:17 final size:17
Alignment explanation
Indices: 74546037--74546070 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74546027 GGCTAGTTGA
74546037 CTCACTATAGCTATAGT
1 CTCACTATAGCTATAGT
74546054 CTCACTATAGCTATAGT
1 CTCACTATAGCTATAGT
74546071 TACCGGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
CTCACTATAGCTATAGT
Found at i:74549625 original size:40 final size:40
Alignment explanation
Indices: 74549581--74549771 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
74549571 GGATATAGCT
* *
74549581 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
74549621 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
74549661 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
74549700 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
74549740 ACTTAGCACAAAAGCCTTC-GGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
74549772 ATATCATTCG
Statistics
Matches: 131, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 78 0.60
41 20 0.15
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:74549699 original size:79 final size:78
Alignment explanation
Indices: 74549555--74549772 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 78
74549545 GAATCACATA
* * * * *
74549555 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATATAG
74549619 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* *
74549634 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAAT-TAG
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAG
74549698 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * * *
74549713 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGCTTAGCCCGGA
74549773 TATCATTCGA
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 55 0.46
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAGTA
ACTCGCACAAATG
Found at i:74557875 original size:79 final size:79
Alignment explanation
Indices: 74557731--74557949 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
74557721 GAATCACATA
* * * * *
74557731 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
74557795 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
74557810 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
74557873 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
74557889 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
74557950 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:74557878 original size:39 final size:41
Alignment explanation
Indices: 74557745--74557949 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
74557735 CGGAATTTAA
* *
74557745 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74557785 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74557825 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
74557864 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
74557904 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
74557945 CCGGA
1 CCGGA
74557950 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74563379 original size:49 final size:49
Alignment explanation
Indices: 74563322--74563526 Score: 326
Period size: 49 Copynumber: 4.2 Consensus size: 49
74563312 TATGATATAC
* *
74563322 ATATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGT
74563370 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
74563418 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
74563467 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
74563516 ATATATATGTG
1 ATATATATGTG
74563527 CTAATGTGAA
Statistics
Matches: 149, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.01
47 43 0.29
49 105 0.70
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:74563638 original size:37 final size:37
Alignment explanation
Indices: 74563588--74563665 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
74563578 GTTCTGTGTG
*
74563588 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTATGGAGATTATGACCGGGTA
*
74563625 AGACCCGATGACTACGTATGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTATGGAGATTATGACCGGGTA
74563662 AGAC
1 AGAC
74563666 TTCATAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTATGGAGATTATGACCGGGTA
Found at i:74567031 original size:138 final size:143
Alignment explanation
Indices: 74566777--74567040 Score: 330
Period size: 138 Copynumber: 1.9 Consensus size: 143
74566767 AGTGTCGATG
* * *
74566777 GCATGTCCCATACATGGTCTTACACTGGCTATCATCTTCGAGGTCGATGCCATGTTCTAGACATG
1 GCATGTCCCAGACATGGTCTTACACTGGCTATCATCCTCGAGGTCGATGCCATGTCCTAGACATG
* * *
74566842 GTCTTACACTAGCTCTCACATAATCGTACTGATGCCATATCCCAGACATGGTCTTACACTGACAC
66 GTCTTACACTAGCACTCACATAATCG-ACCGATGCCACATCCCAGACATGGTCTTACACTGACAC
74566907 ATCTCGTAGCCAAT
130 ATCTCGTAGCCAAT
* *
74566921 GCATGTCCCAGACAT-GTCTTATACTGGCTTAT-GTCCT-GAGG-CTGATG-CATGTCCTAGACA
1 GCATGTCCCAGACATGGTCTTACACTGGC-TATCATCCTCGAGGTC-GATGCCATGTCCTAGACA
* *
74566981 T-GTCTTACACTAGCACTCGTC-TCAAT-G-CCGATGCCACGTCCCAGACATGGTCTTACACTG
64 TGGTCTTACACTAGCACTC-ACAT-AATCGACCGATGCCACATCCCAGACATGGTCTTACACTG
74567041 GCTCTCATAA
Statistics
Matches: 106, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
138 30 0.28
140 18 0.17
141 18 0.17
142 8 0.08
143 15 0.14
144 17 0.16
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (143 bp):
GCATGTCCCAGACATGGTCTTACACTGGCTATCATCCTCGAGGTCGATGCCATGTCCTAGACATG
GTCTTACACTAGCACTCACATAATCGACCGATGCCACATCCCAGACATGGTCTTACACTGACACA
TCTCGTAGCCAAT
Found at i:74570302 original size:17 final size:18
Alignment explanation
Indices: 74570280--74570313 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74570270 CACATTGAAG
74570280 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
74570297 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
74570314 CTTCCTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:74571441 original size:29 final size:29
Alignment explanation
Indices: 74571374--74571468 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
74571364 AAGTCTGCAT
* *
74571374 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
74571402 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
74571431 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
74571460 ACATTCATA
1 ACATTCATA
74571469 GTCATGCTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 21 0.35
29 39 0.65
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Done.