Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 253 of 345
Found at i:74579119 original size:29 final size:29
Alignment explanation
Indices: 74579058--74579146 Score: 144
Period size: 29 Copynumber: 3.1 Consensus size: 29
74579048 AGTCTACATA
* *
74579058 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
74579086 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
74579115 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
74579144 ATA
1 ATA
74579147 GTCATGCTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 17 0.30
29 39 0.70
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:74580397 original size:25 final size:25
Alignment explanation
Indices: 74580369--74580431 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
74580359 CCTTGTCAAG
74580369 CATGTGACGCCACCTCTGGGCCCCA
1 CATGTGACGCCACCTCTGGGCCCCA
* *
74580394 CATGTGATGCCACCTCTGGGCCCTA
1 CATGTGACGCCACCTCTGGGCCCCA
74580419 CATGTGACGCCAC
1 CATGTGACGCCAC
74580432 TTGCCACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.17, C:0.40, G:0.24, T:0.19
Consensus pattern (25 bp):
CATGTGACGCCACCTCTGGGCCCCA
Found at i:74582999 original size:20 final size:21
Alignment explanation
Indices: 74582956--74583001 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
74582946 ACTATTTTGT
74582956 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
74582976 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
74582995 TATGGGC
1 TATGGGC
74583002 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:74594005 original size:26 final size:26
Alignment explanation
Indices: 74593972--74594022 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
74593962 TCTGACCATC
*
74593972 TTTCCTCC-TCCTACTTTCT-TTTCTT
1 TTTCCTCCAT-CTACCTTCTCTTTCTT
74593997 TTTCTCTCCATCTACCTTCTCTTTCT
1 TTTC-CTCCATCTACCTTCTCTTTCT
74594023 ACCGACCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 4 0.18
26 12 0.55
27 6 0.27
ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTCCTCCATCTACCTTCTCTTTCTT
Found at i:74608557 original size:11 final size:11
Alignment explanation
Indices: 74608525--74608564 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
74608515 ATTAGAAATA
74608525 TATTATTTTAAT
1 TATTATTTT-AT
*
74608537 GATATATTTTAT
1 TAT-TATTTTAT
74608549 TATTATTTTAT
1 TATTATTTTAT
74608560 TATTA
1 TATTA
74608565 ATTATTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 13 0.52
12 6 0.24
13 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:74611741 original size:28 final size:29
Alignment explanation
Indices: 74611709--74611807 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74611699 ATAATAAGCC
*
74611709 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74611737 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74611765 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74611794 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74611808 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74619755 original size:28 final size:29
Alignment explanation
Indices: 74619723--74619821 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
74619713 ATAATAAGCC
*
74619723 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74619751 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
74619779 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74619808 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74619822 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74621981 original size:46 final size:46
Alignment explanation
Indices: 74621929--74622064 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
74621919 AGTGTGCTCT
74621929 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
74621975 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
74622021 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
74622065 TCATGTCAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 82 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:74624905 original size:65 final size:65
Alignment explanation
Indices: 74624801--74624931 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
74624791 AGTCCCACGC
*
74624801 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTTAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
74624866 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
74624931 A
1 A
74624932 ACCCTAGGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:74629092 original size:14 final size:14
Alignment explanation
Indices: 74629073--74629102 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
74629063 TCAAGTGGCT
74629073 AACCCTAATTCTCC
1 AACCCTAATTCTCC
74629087 AACCCTAATTCTCC
1 AACCCTAATTCTCC
74629101 AA
1 AA
74629103 GACAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.27
Consensus pattern (14 bp):
AACCCTAATTCTCC
Found at i:74630888 original size:17 final size:17
Alignment explanation
Indices: 74630866--74630901 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
74630856 TGCTTAAGTA
*
74630866 CCTAGCTCTTCCATGAT
1 CCTAGCTATTCCATGAT
74630883 CCTAGCTATTCCATGAT
1 CCTAGCTATTCCATGAT
74630900 CC
1 CC
74630902 AATCCTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.36, G:0.11, T:0.33
Consensus pattern (17 bp):
CCTAGCTATTCCATGAT
Found at i:74631828 original size:65 final size:65
Alignment explanation
Indices: 74631724--74631854 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
74631714 AGTCCTATGC
* * * *
74631724 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTTAAACATGCATTCAGGTTAACCTT
1 ATCAGATAATAATAACATGGCATGCAGCAAAAAGTAACAGTCAAACATGCATTCAGGTCAACCTT
74631789 ATCAGATAATAATAACATGGCATGCAGCAAAAAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGCAAAAAGTAACAGTCAAACATGCATTCAGGTCAACCTT
74631854 A
1 A
74631855 ACCCTAGGGG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGCAAAAAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:74631913 original size:27 final size:26
Alignment explanation
Indices: 74631857--74631913 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
74631847 CAACCTTAAC
* * *
74631857 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
74631883 CCTAGGGGTAAATCAGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
74631910 CCTA
1 CCTA
74631914 TAAAGGTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:74635983 original size:39 final size:40
Alignment explanation
Indices: 74635846--74636087 Score: 357
Period size: 40 Copynumber: 6.1 Consensus size: 40
74635836 TGGATGATAA
* * *
74635846 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
74635886 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74635926 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74635966 CC-GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74636005 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
74636044 CCGGGCTATGTCCCAAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
74636084 CCGG
1 CCGG
74636088 TTCAATCCCG
Statistics
Matches: 188, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 76 0.40
40 112 0.60
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74635998 original size:79 final size:80
Alignment explanation
Indices: 74635846--74636087 Score: 350
Period size: 79 Copynumber: 3.0 Consensus size: 80
74635836 TGGATGATAA
* * *
74635846 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
*
74635910 GTGCGAGTTACTATAT
65 GTACGAGTTACTATAT
74635926 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
74635990 TACGAGTTACTATAT
66 TACGAGTTACTATAT
* * * *
74636005 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGGCTATGTCCCAAAGGTATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
74636069 -AGCGAG-TAGCTATAT
66 TA-CGAGTTA-CTATAT
74636084 CCGG
1 CCGG
74636088 TTCAATCCCG
Statistics
Matches: 150, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
78 23 0.15
79 90 0.60
80 37 0.25
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TACGAGTTACTATAT
Found at i:74644238 original size:40 final size:40
Alignment explanation
Indices: 74644180--74644383 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
74644170 TGGATGATAA
* * *
74644180 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
74644220 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74644260 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74644300 CCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
74644340 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
74644380 CCGG
1 CCGG
74644384 TTCAATCCCG
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.98
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74649915 original size:27 final size:27
Alignment explanation
Indices: 74649857--74650251 Score: 230
Period size: 27 Copynumber: 14.7 Consensus size: 27
74649847 TTAGTTTACC
** * * *
74649857 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
74649884 AAATTACCAAAATACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
74649911 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
74649938 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *** *
74649965 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
74649992 AAATTACTAAAATACCCTCGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
74650019 AAATTACCAAAATACCCTCGTATTACAGTA
1 AAATTACCAAAATACCCTCG-ATT-TA-TA
* *
74650049 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
74650075 AAATTGCTAAAATACCCT---TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
74650099 AAATTA-TAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTATA
* * *
74650126 AAATTACCAAGATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
74650153 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * * *
74650180 AAATTACCGAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
74650207 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
74650234 AAGTTA-CAGAAATACCCT
1 AAATTACCA-AAATACCCT
74650252 TGACTTTCTA
Statistics
Matches: 306, Mismatches: 49, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.01
24 20 0.07
26 23 0.08
27 234 0.76
28 6 0.02
29 1 0.00
30 20 0.07
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:74650129 original size:107 final size:105
Alignment explanation
Indices: 74649991--74650250 Score: 267
Period size: 107 Copynumber: 2.4 Consensus size: 105
74649981 CTCGATTTAC
**
74649991 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGTA-TTACAGTAAAATTA
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATACCC-C-TAGTT--AGTAAAATTA
74650055 CCAAAATACC-CTAGTTTGTAAAATTGCTAAAATACCCTTTTGT
62 CCAAAATACCACTAGTTTGTAAAATTGCTAAAATACCCTTTTGT
** * *
74650098 AAAATTA-TAGAAATACCCTCAATTTGTAAAATTACCAAGATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACTA-AAATACCCTCAATTTACAAAATTACCAAAATACCCCTAGTTAGTAAAATTACCA
* * * ** *
74650162 AAATACCACTGGTTTGTGAAATTACCGAAATACCTTCAATTTGT
65 AAATACCACTAGTTTGTAAAATTGCTAAAATACC--C-TTTTGT
* ** *
74650206 AAAATTACCAAAATACCCTTGATTTACAAAGTTA-CAGAAATACCC
1 AAAATTACTAAAATACCCTCAATTTACAAAATTACCA-AAATACCC
74650251 TTGACTTTCT
Statistics
Matches: 126, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
104 19 0.15
105 23 0.18
106 5 0.04
107 40 0.32
108 38 0.30
109 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (105 bp):
AAAATTACTAAAATACCCTCAATTTACAAAATTACCAAAATACCCCTAGTTAGTAAAATTACCAA
AATACCACTAGTTTGTAAAATTGCTAAAATACCCTTTTGT
Found at i:74650202 original size:81 final size:78
Alignment explanation
Indices: 74650046--74650223 Score: 259
Period size: 81 Copynumber: 2.3 Consensus size: 78
74650036 TCGTATTACA
* * *
74650046 GTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTGCTAAAATACCCTTTTGTAAAATTATAGAA
1 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTTGTAAAATTACAGAA
74650110 ATACCCTCAATTT
66 ATACCCTCAATTT
* * *
74650123 GTAAAATTACCAAGATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACC
1 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CT--TTTGTAAAATTACA
*
74650188 GAAATACCTTCAATTT
63 GAAATACCCTCAATTT
74650204 GTAAAATTACCAAAATACCC
1 GTAAAATTACCAAAATACCC
74650224 TTGATTTACA
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
77 16 0.18
78 26 0.29
79 2 0.02
81 45 0.51
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (78 bp):
GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTTGTAAAATTACAGAA
ATACCCTCAATTT
Found at i:74650247 original size:81 final size:76
Alignment explanation
Indices: 74650046--74650252 Score: 254
Period size: 81 Copynumber: 2.6 Consensus size: 76
74650036 TCGTATTACA
* *
74650046 GTAAAATTACCAAAATACCCTAGTTTGTAAAATTGCTAAAATACCCTTTTGTAAAATTATAGAAA
1 GTAAAATTACCAAAATACCCTAGTTTGTAAAATTAC-AAAATACCCTTTTGTAAAATTACAGAAA
74650111 TACCCTCAATTT
65 TACCCTCAATTT
* * *
74650123 GTAAAATTACCAAGATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACC
1 GTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTA-CAAAATACC-CT--TTTGTAAAATTACA
*
74650188 GAAATACCTTCAATTT
61 GAAATACCCTCAATTT
* *
74650204 GTAAAATTACCAAAATACCCTTGATT-TACAAAGTTACAGAAATACCCTT
1 GTAAAATTACCAAAATACCCTAGTTTGTA-AAA-TTACA-AAATACCCTT
74650253 GACTTTCTAA
Statistics
Matches: 113, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
77 16 0.14
78 26 0.23
79 5 0.04
80 14 0.12
81 52 0.46
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (76 bp):
GTAAAATTACCAAAATACCCTAGTTTGTAAAATTACAAAATACCCTTTTGTAAAATTACAGAAAT
ACCCTCAATTT
Found at i:74650313 original size:27 final size:27
Alignment explanation
Indices: 74649950--74650313 Score: 131
Period size: 27 Copynumber: 13.4 Consensus size: 27
74649940 ATTACTGTTT
* * ***
74649950 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
74649977 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
74650004 TACCCTCGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
74650031 TACCC-TCGTATTACAGTAAAATTACCAAAA
1 TACCCTTGGT-TTAC---AAAATTACTAAAA
* ** *
74650061 TACCC-TAGTTTGTAAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
74650087 TACCCTT--TTGT--AAAATTA-TAGAAA
1 TACCCTTGGTT-TACAAAATTACTA-AAA
*** ** * *
74650111 TACCCTCAATTTGTAAAATTACCAAGA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
74650138 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** **
74650165 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTACAAAATTACTAAAA
** ** *
74650192 TA-CCTTCAATTTGTAAAATTACCAAAA
1 TACCCTT-GGTTTACAAAATTACTAAAA
* *
74650219 TACCCTTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
* *
74650246 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTTG-GTTTAC--AAAATTACT-AAAA
* * *
74650275 TACCATTAGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
74650302 TACCCTTGGTTT
1 TACCCTTGGTTT
74650314 GTAGATTTAC
Statistics
Matches: 272, Mismatches: 41, Indels: 48
0.75 0.11 0.13
Matches are distributed among these distances:
23 2 0.01
24 15 0.06
25 4 0.01
26 24 0.09
27 175 0.64
28 13 0.05
29 18 0.07
30 21 0.08
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:74650397 original size:27 final size:27
Alignment explanation
Indices: 74650354--74650426 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
74650344 AAATGACTAA
*
74650354 AATACCCCTATTA-GGTAAAGAGACCGT
1 AATACCCCT-GTAGGGTAAAGAGACCGT
*
74650381 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAGAGACCGT
*
74650408 AATACCCCTGTATGGTAAA
1 AATACCCCTGTAGGGTAAA
74650427 ATGACGAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGAGACCGT
Found at i:74651258 original size:26 final size:26
Alignment explanation
Indices: 74651229--74651411 Score: 230
Period size: 26 Copynumber: 7.2 Consensus size: 26
74651219 GAGGAAGTGC
74651229 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
74651255 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74651281 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
74651307 AAAAGGGTTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
74651333 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** **
74651359 AAAAGGGCTT-TGCCCTGGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
74651384 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
74651407 AAAAG
1 AAAAG
74651412 AGACTAGGCC
Statistics
Matches: 133, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
23 5 0.04
24 3 0.02
25 27 0.20
26 98 0.74
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:74651307 original size:52 final size:52
Alignment explanation
Indices: 74651229--74651411 Score: 284
Period size: 52 Copynumber: 3.6 Consensus size: 52
74651219 GAGGAAGTGC
74651229 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* * *
74651281 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGTTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* **
74651333 AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCTGGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
74651384 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG
74651412 AGACTAGGCC
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
48 5 0.04
49 5 0.04
50 8 0.07
51 21 0.17
52 82 0.68
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:74651657 original size:31 final size:31
Alignment explanation
Indices: 74651622--74651688 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
74651612 CGTTTACAGT
*
74651622 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGACCCAATGATATGATTTATGA
*
74651653 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAATGATATGATTTATGA
74651684 AAAGG
1 AAAGG
74651689 TTCAGCGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAATGATATGATTTATGA
Found at i:74657908 original size:40 final size:40
Alignment explanation
Indices: 74657783--74657934 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
74657773 AATTGAATGA
* * * *
74657783 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTC
1 TATCCGGGCTAAGA-CCCGAAGGC-ATTGTGCAGAGACATTC
* * * *
74657823 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGAGACATTC
74657864 -ATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCAGAGACATTC
*
74657903 TATCCGGGCTAAGACCCAAAGGCATTTGTGCA
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
74657935 CATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 77 0.84
41 6 0.07
42 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAGAGACATTC
Found at i:74657947 original size:40 final size:40
Alignment explanation
Indices: 74657823--74657949 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
74657813 CTGGAAATTC
* * * * *
74657823 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
74657863 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
*
74657903 TATCCGGGCTAAGACCCAAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
74657943 TATCCGG
1 TATCCGG
74657950 TTATATTCCG
Statistics
Matches: 68, Mismatches: 17, Indels: 4
0.76 0.19 0.04
Matches are distributed among these distances:
39 2 0.03
40 66 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:74661834 original size:27 final size:28
Alignment explanation
Indices: 74661793--74661894 Score: 129
Period size: 27 Copynumber: 3.8 Consensus size: 28
74661783 CTGCCAGAAT
* *
74661793 AGATA-TTGTGACAGAGTCACTAGATAC
1 AGATATTTGTGGCAGAGCCACTAGATAC
* *
74661820 AGATA-TTGTGGCAGAGCCACCAGAAAC
1 AGATATTTGTGGCAGAGCCACTAGATAC
*
74661847 AGATATTTGTGGCAGAGCCACTAGAT-T
1 AGATATTTGTGGCAGAGCCACTAGATAC
*
74661874 AGATATTTGTGGCACAGCCAC
1 AGATATTTGTGGCAGAGCCAC
74661895 CAGACCGCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
27 48 0.73
28 18 0.27
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACTAGATAC
Found at i:74661869 original size:55 final size:54
Alignment explanation
Indices: 74661793--74661898 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 54
74661783 CTGCCAGAAT
* *
74661793 AGATATTGTGACAGAGTCACTAGATACAGATA-TTGTGGCAGAGCCACCAGAAAC
1 AGATATTGTGACAGAGCCACTAGAT-CAGATATTTGTGGCACAGCCACCAGAAAC
* *
74661847 AGATATTTGTGGCAGAGCCACTAGATTAGATATTTGTGGCACAGCCACCAGA
1 AGATA-TTGTGACAGAGCCACTAGATCAGATATTTGTGGCACAGCCACCAGA
74661899 CCGCTTCCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 10 0.22
55 36 0.78
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (54 bp):
AGATATTGTGACAGAGCCACTAGATCAGATATTTGTGGCACAGCCACCAGAAAC
Found at i:74667176 original size:41 final size:40
Alignment explanation
Indices: 74667022--74667178 Score: 196
Period size: 40 Copynumber: 3.9 Consensus size: 40
74667012 GGATTTAACT
* *
74667022 GGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
74667061 GGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
74667101 AGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCT
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
74667141 GGA-ACTAGTCACTTGCGCA-AAATGCCTTCGGGACTTAG
1 GGATA-TAGTAAC-T-CGCACAAATGCCTTCGGGACTTAG
74667179 GTCGGTTATC
Statistics
Matches: 106, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 16 0.15
40 65 0.61
41 20 0.19
42 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:74673526 original size:43 final size:42
Alignment explanation
Indices: 74673417--74673526 Score: 100
Period size: 42 Copynumber: 2.6 Consensus size: 42
74673407 GATTTGAGAT
* * *
74673417 TTACATGTAAGACCATGTCTGGGACATCAGCATTGTATTTGA
1 TTACATGTAAGACCACGTCTGGGACATCAGCATCGTATCTGA
* * * *
74673459 TTTCGTGTAAGACC-CTGTCAGGGACA-GAGGCATCG-ATACTGAA
1 TTACATGTAAGACCAC-GTCTGGGACATCA-GCATCGTAT-CTG-A
74673502 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCACGTCTGGGAC
74673527 GTCGGCGTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 3 0.06
42 28 0.53
43 21 0.40
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACATCAGCATCGTATCTGA
Found at i:74676237 original size:30 final size:30
Alignment explanation
Indices: 74676203--74676368 Score: 88
Period size: 30 Copynumber: 5.2 Consensus size: 30
74676193 GACCTAAATG
74676203 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * ** * *
74676233 CATGTTATTATTATCTGATAAGATTGACCTGAATG-
1 CATG---TT-TGA-CTGTTACTATTTA-CTGCATGC
*
74676268 CATGTTTGACTGTTACTATTTACTGCATTC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * *
74676298 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTGTTA-CT-AT----TT-A-CTGCATGC
74676333 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
74676363 CATGTT
1 CATGTT
74676369 ATTATTATCT
Statistics
Matches: 98, Mismatches: 20, Indels: 36
0.64 0.13 0.23
Matches are distributed among these distances:
28 5 0.05
29 15 0.15
30 26 0.27
31 4 0.04
32 2 0.02
33 2 0.02
34 4 0.04
35 20 0.20
36 15 0.15
37 5 0.05
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTGTTACTATTTACTGCATGC
Found at i:74676295 original size:65 final size:65
Alignment explanation
Indices: 74676186--74676381 Score: 365
Period size: 65 Copynumber: 3.0 Consensus size: 65
74676176 CCCCTAGGCT
*
74676186 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
* *
74676251 TAAGATTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATTCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
74676316 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
74676381 T
1 T
74676382 GCATGAGACT
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 126 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:74680113 original size:15 final size:14
Alignment explanation
Indices: 74680093--74680135 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
74680083 CCATACGGGT
74680093 TAATAAATAAAATAA
1 TAATAAA-AAAATAA
74680108 TAATAAAAATATATAA
1 TAATAAAAA-A-ATAA
74680124 T-ATAAAAAAATA
1 TAATAAAAAAATA
74680136 GGAAATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.12
14 3 0.12
15 15 0.58
16 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TAATAAAAAAATAA
Found at i:74680125 original size:13 final size:13
Alignment explanation
Indices: 74680093--74680135 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
74680083 CCATACGGGT
74680093 TAATAA-ATAAAA
1 TAATAATATAAAA
74680105 TAATAATA-AAAA
1 TAATAATATAAAA
74680117 TATATAATATAAAA
1 TA-ATAATATAAAA
*
74680131 AAATA
1 TAATA
74680136 GGAAATAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.44
13 10 0.37
14 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:74680412 original size:27 final size:26
Alignment explanation
Indices: 74680382--74680438 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
74680372 AATACCTTTA
* * *
74680382 TAGGTGAAAAATTTACAGATTTACCCT
1 TAGGAGAAAAA-TTACAGATATACCCC
* *
74680409 TAGGAGCAAAATTACTGATATACCCC
1 TAGGAGAAAAATTACAGATATACCCC
74680435 TAGG
1 TAGG
74680439 GTTAAGGTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (26 bp):
TAGGAGAAAAATTACAGATATACCCC
Found at i:74680492 original size:30 final size:30
Alignment explanation
Indices: 74680451--74680558 Score: 80
Period size: 29 Copynumber: 3.5 Consensus size: 30
74680441 TAAGGTTGAC
74680451 CTGAATG-CATGTTTGACTGTTACTATTTA
1 CTGAATGCCATGTTTGACTGTTACTATTTA
* * *
74680480 CTGCATGCCATG-TT-ATTATTATCTGATAAGGTTGA
1 CTGAATGCCATGTTTGACTGTTA-CT-AT----TT-A
74680515 CCTGAATG-CATGTTTGACTGTTACTATTTA
1 -CTGAATGCCATGTTTGACTGTTACTATTTA
*
74680545 CTGTATGCCATGTT
1 CTGAATGCCATGTT
74680559 ATTATTATCT
Statistics
Matches: 60, Mismatches: 7, Indels: 23
0.67 0.08 0.26
Matches are distributed among these distances:
28 5 0.08
29 16 0.27
30 13 0.22
31 2 0.03
34 2 0.03
35 7 0.12
36 10 0.17
37 5 0.08
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.43
Consensus pattern (30 bp):
CTGAATGCCATGTTTGACTGTTACTATTTA
Found at i:74680545 original size:65 final size:65
Alignment explanation
Indices: 74680441--74680571 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
74680431 CCCCTAGGGT
74680441 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
74680506 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGTATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
74680571 T
1 T
74680572 GTATGGGACT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:74682562 original size:14 final size:14
Alignment explanation
Indices: 74682538--74682572 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
74682528 ATCGCTTTAT
74682538 TAATACACATTCTCA
1 TAAT-CACATTCTCA
74682553 TAATCACATTCTCA
1 TAATCACATTCTCA
74682567 TAATCA
1 TAATCA
74682573 TACTTACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATCACATTCTCA
Found at i:74682853 original size:40 final size:40
Alignment explanation
Indices: 74682779--74682956 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
74682769 GAGTCACGTA
** *
74682779 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
74682818 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74682858 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
74682898 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74682938 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74682957 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:74690940 original size:40 final size:40
Alignment explanation
Indices: 74690866--74691043 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
74690856 GAGTCACGTA
** *
74690866 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
74690905 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74690945 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
74690985 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
74691025 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74691044 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:74696169 original size:39 final size:39
Alignment explanation
Indices: 74696115--74696409 Score: 432
Period size: 39 Copynumber: 7.5 Consensus size: 39
74696105 TAATGGAGAA
* **
74696115 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTACTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74696154 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74696193 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74696232 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
74696271 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74696310 TTATATCCGGGCTAA-TCCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGT-CCCGAAGGCATTCGTGCTGGTG
* * * * *
74696349 TTACATTCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
74696388 TTATATCCGGGCTTAAAGTCCC
1 TTATATCCGGGC-T-AAGTCCC
74696410 ACATGCTTTG
Statistics
Matches: 234, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.00
39 213 0.91
40 19 0.08
41 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74702839 original size:39 final size:39
Alignment explanation
Indices: 74702785--74703002 Score: 330
Period size: 39 Copynumber: 5.5 Consensus size: 39
74702775 TAATGGAGAA
74702785 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
74702824 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74702863 TTATATCCGGGCTGAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* **
74702902 TTATATCCGGGCCAAACCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
74702941 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
74702980 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
74703003 CATGCTTTGT
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 145 0.88
40 20 0.12
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74706434 original size:51 final size:52
Alignment explanation
Indices: 74706370--74706503 Score: 177
Period size: 51 Copynumber: 2.6 Consensus size: 52
74706360 CTGATACCTG
*
74706370 GTGGCCTGT-ACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCT-TCACATAGTACCACACTTGTAGTCAAAGCTACCTTCTTGCACAAA
* * *
74706421 GTGGCCTTCACATAGTACCACACTTGT-GACCAAAGCTATCTTTTTGCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAG-TCAAAGCTACCTTCTTGCACAAA
*
74706473 GCGGCCTTCACATAGTACCACACTTG-AGTCA
1 GTGGCCTTCACATAGTACCACACTTGTAGTCA
74706504 CTAGTGACGT
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
50 2 0.03
51 39 0.53
52 32 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTAGTCAAAGCTACCTTCTTGCACAAA
Found at i:74706492 original size:52 final size:51
Alignment explanation
Indices: 74706379--74706498 Score: 170
Period size: 52 Copynumber: 2.3 Consensus size: 51
74706369 GGTGGCCTGT
* * *
74706379 ACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGTGGCCTTC
1 ACATAGTACCACACTTGTAGCCAAAGCTACCTTCTTCACAAAGCGGCCTTC
* *
74706430 ACATAGTACCACACTTGT-GACCAAAGCTATCTTTTTGCACAAAGCGGCCTTC
1 ACATAGTACCACACTTGTAG-CCAAAGCTACCTTCTT-CACAAAGCGGCCTTC
74706482 ACATAGTACCACACTTG
1 ACATAGTACCACACTTG
74706499 AGTCACTAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
50 1 0.02
51 30 0.48
52 31 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (51 bp):
ACATAGTACCACACTTGTAGCCAAAGCTACCTTCTTCACAAAGCGGCCTTC
Found at i:74711282 original size:27 final size:28
Alignment explanation
Indices: 74711226--74711295 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74711216 AAAATTGTAC
74711226 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74711254 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74711281 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74711296 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74711306 original size:27 final size:27
Alignment explanation
Indices: 74711226--74711307 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74711216 AAAATTGTAC
* *
74711226 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74711254 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
74711281 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74711308 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74722852 original size:34 final size:34
Alignment explanation
Indices: 74722809--74722882 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
74722799 TAATAAAATG
74722809 AATATTTCTACTT-TGGGTTCATGGTCCCGAAACC
1 AATATTTCTA-TTGTGGGTTCATGGTCCCGAAACC
*
74722843 AATATTTCTATTGTGGGTTCATGGTCCTGAAACC
1 AATATTTCTATTGTGGGTTCATGGTCCCGAAACC
*
74722877 ACTATT
1 AATATT
74722883 CTGATCTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 2 0.05
34 35 0.95
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (34 bp):
AATATTTCTATTGTGGGTTCATGGTCCCGAAACC
Found at i:74724775 original size:25 final size:23
Alignment explanation
Indices: 74724747--74724799 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
74724737 TTTATGAGTG
* *
74724747 TCCTAATATAGGCTCTTCTTGAGCA
1 TCCTAATAT-GGCTC-ACTTGAACA
*
74724772 TCCTGATATGGCTCACTTGAACA
1 TCCTAATATGGCTCACTTGAACA
74724795 TCCTA
1 TCCTA
74724800 TTCTATGGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 11 0.46
24 5 0.21
25 8 0.33
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (23 bp):
TCCTAATATGGCTCACTTGAACA
Found at i:74728910 original size:40 final size:40
Alignment explanation
Indices: 74728802--74729051 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74728792 CGGGATTTAA
* * * * *
74728802 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74728842 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74728882 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74728922 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74728962 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74729002 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74729042 CCGGATATAT
1 CCGGATATAT
74729052 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74736724 original size:40 final size:40
Alignment explanation
Indices: 74736616--74736865 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74736606 CGGGATTTAA
* * * * *
74736616 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74736656 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74736696 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74736736 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74736776 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74736816 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74736856 CCGGATATAT
1 CCGGATATAT
74736866 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74739978 original size:39 final size:40
Alignment explanation
Indices: 74739804--74740051 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
74739794 CGGGATTTAA
* * * * *
74739804 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74739844 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74739884 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74739924 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74739963 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74740002 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74740042 CCGGATATAT
1 CCGGATATAT
74740052 TTCCAATGTT
Statistics
Matches: 189, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 8 0.04
39 61 0.32
40 120 0.63
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74740023 original size:118 final size:120
Alignment explanation
Indices: 74739804--74740051 Score: 367
Period size: 118 Copynumber: 2.1 Consensus size: 120
74739794 CGGGATTTAA
* * * * * * *
74739804 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
74739869 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
74739924 CCGGATATATCAACTCGCACGAATGCCTTCGGGTC-TTAGCCGGATAT-ATCAACTCGCACGAAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGAT-AACTCGCACAAAG
74739987 GCCTTC-GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
65 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74740042 CCGGATATAT
1 CCGGATATAT
74740052 TTCCAATGTT
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
118 60 0.52
119 24 0.21
120 32 0.28
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (120 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74747718 original size:40 final size:40
Alignment explanation
Indices: 74747610--74747859 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74747600 CGGGATTTAA
* * * * *
74747610 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74747650 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74747690 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74747730 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74747770 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74747810 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74747850 CCGGATATAT
1 CCGGATATAT
74747860 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74756817 original size:43 final size:43
Alignment explanation
Indices: 74756712--74756828 Score: 134
Period size: 41 Copynumber: 2.8 Consensus size: 43
74756702 TGGCAACGAT
* *
74756712 ATATGTGGTTACGTGTAAGACCATGTCTA-GGACATCAGCATCG
1 ATATGTGATTACATGTAAGACCATGTC-AGGGACATCAGCATCG
* * *
74756755 -TATTTGATT-CATGTAAGACCCTGTCAGGGACAAT-GGCATCG
1 ATATGTGATTACATGTAAGACCATGTCAGGGAC-ATCAGCATCG
*
74756796 ATATGTGATTACATGTAAGACCATGTCTGGGAC
1 ATATGTGATTACATGTAAGACCATGTCAGGGAC
74756829 GTTGGTATTG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
40 1 0.02
41 24 0.39
42 17 0.27
43 20 0.32
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCATGTCAGGGACATCAGCATCG
Found at i:74760803 original size:24 final size:24
Alignment explanation
Indices: 74760771--74760833 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
74760761 AATCTCAAAT
74760771 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74760795 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74760819 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
74760834 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:74763208 original size:40 final size:40
Alignment explanation
Indices: 74763101--74763316 Score: 230
Period size: 39 Copynumber: 5.5 Consensus size: 40
74763091 CGGATGATAA
* * *
74763101 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-T
* *
74763141 CCGGGCTAA-ACCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
*
74763180 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGA-A-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT-ATAT
** *
74763219 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
74763259 CCGGG-TCAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-TTATAT
* *
74763299 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74763317 TACTTGGGTT
Statistics
Matches: 150, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 81 0.54
40 67 0.45
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:74763234 original size:79 final size:78
Alignment explanation
Indices: 74763097--74763281 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 78
74763087 TATTCGGATG
* *
74763097 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAA-TCCGGGCTAAACCCGAAGGCAA
**
74763162 TTGTGCGAGTTATT
65 TTGTGCGAGTTACA
* * * *
74763176 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGAA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACT-AATCCGGGCTAA-ACCCGAAGGCA
*
74763240 TTTGTGCGAGTTACA
64 ATTGTGCGAGTTACA
74763255 ATAACCGGG-TCAAGTCCCGAAGGCATT
1 ATAACCGGGCT-AAGTCCCGAAGGCATT
74763282 TGAGCAAGTA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 10 0.11
79 81 0.87
80 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATCCGGGCTAAACCCGAAGGCAAT
TGTGCGAGTTACA
Found at i:74763305 original size:79 final size:78
Alignment explanation
Indices: 74763097--74763316 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 78
74763087 TATTCGGATG
* * *
74763097 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAACCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGT-AGTTATATCCGGGCTAATCCCGAAGGCA
**
74763161 ATTGTGCGAGTTATT
64 ATTGTGCGAGTTACA
* * *
74763176 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGC-G-AGTTATTGAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTA-T-ATCCGGGCTAA-TCCCGAAGGC
*
74763239 ATTTGTGCGAGTTACA
63 AATTGTGCGAGTTACA
* *
74763255 ATAACCGGG-TCAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTGTGC-AGTAGTTATATCCGGGCT-AATCCCGAAGG
74763317 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
75 3 0.03
76 1 0.01
77 1 0.01
78 10 0.08
79 91 0.77
80 5 0.04
81 2 0.02
82 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTATATCCGGGCTAATCCCGAAGGCAAT
TGTGCGAGTTACA
Found at i:74771300 original size:40 final size:39
Alignment explanation
Indices: 74771189--74771371 Score: 212
Period size: 39 Copynumber: 4.6 Consensus size: 39
74771179 CGGATGATAA
*
74771189 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAA-T
* * * *
74771229 CCGGGCTAA-ACCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AT
* *
74771268 CCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTATTGAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AAT
*
74771307 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AT
74771347 CCGGG-TCAAGTCCCGAAGGCATTTG
1 CCGGGCT-AAGTCCCGAAGGCATTTG
74771372 AGCAAGTAGT
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 67 0.54
40 56 0.45
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT
Found at i:74771322 original size:79 final size:78
Alignment explanation
Indices: 74771185--74771369 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 78
74771175 TATTCGGATG
*
74771185 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCTAGTGACTAA-TCCGGGCTAAACCCGAAGGCAA
*
74771250 TTGTGCGAGTTATT
65 TTGTGCGAGTTACT
* * * *
74771264 ATATCCGGGCTAAGTCCCGAAGGCATTGGTG-TGAGTTATTGAA-CCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCT-AGTGACT-AATCCGGGCTAA-ACCCGAAGGC
* *
74771327 ATTTGTGTGAGTTACT
63 AATTGTGCGAGTTACT
74771343 ATAACCGGG-TCAAGTCCCGAAGGCATT
1 ATAACCGGGCT-AAGTCCCGAAGGCATT
74771370 TGAGCAAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
78 11 0.12
79 80 0.86
80 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCTAGTGACTAATCCGGGCTAAACCCGAAGGCAAT
TGTGCGAGTTACT
Found at i:74771393 original size:79 final size:78
Alignment explanation
Indices: 74771185--74771404 Score: 227
Period size: 79 Copynumber: 2.8 Consensus size: 78
74771175 TATTCGGATG
* * *
74771185 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAACCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG-GC-AGTGAGTTATATCCGGGCTAATCCCGAAGGCA
*
74771249 ATTGTGCGAGTTATT
64 ATTGTGCGAGTTACT
* * *
74771264 ATATCCGGGCTAAGTCCCGAAGGCA-TTGG-TGTGAGTTATTGAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGGCAGTGAGTTA-T-ATCCGGGCTAA-TCCCGAAGGC
* *
74771327 ATTTGTGTGAGTTACT
63 AATTGTGCGAGTTACT
*
74771343 ATAACCGGG-TCAAGTCCCGAAGGCATTTGAGCAAGT-AGTTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTG-GC-AGTGAGTTATATCCGGGCT-AATCCCGAAGG
74771405 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
75 6 0.05
76 1 0.01
77 1 0.01
78 13 0.11
79 80 0.68
80 8 0.07
81 2 0.02
82 5 0.04
83 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGGCAGTGAGTTATATCCGGGCTAATCCCGAAGGCAAT
TGTGCGAGTTACT
Found at i:74775823 original size:29 final size:29
Alignment explanation
Indices: 74775791--74775925 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
74775781 ATACCCTCCG
** * *
74775791 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
74775820 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74775849 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
74775878 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74775907 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
74775926 GAAAGCAAAC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:74775858 original size:58 final size:58
Alignment explanation
Indices: 74775737--74775926 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
74775727 TACTCGATTT
* * * *** *
74775737 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
74775795 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
74775853 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
74775911 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
74775927 AAAGCAAACT
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:74783877 original size:29 final size:29
Alignment explanation
Indices: 74783845--74783979 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
74783835 ATACCCTCCG
** * *
74783845 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
74783874 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74783903 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
74783932 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74783961 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
74783980 GAAAGCAAAC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:74783912 original size:58 final size:58
Alignment explanation
Indices: 74783791--74783980 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
74783781 TACTCTATTT
* * * *** *
74783791 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
74783849 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
74783907 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
74783965 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
74783981 AAAGCAAACT
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:74784772 original size:38 final size:37
Alignment explanation
Indices: 74784721--74784816 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 37
74784711 ACCACTTCGA
** *
74784721 CCACCCTGTACACCACATATGAGC-TACAATAAGCCCAT
1 CCACCCTACACACCACATATGACCATAC--TAAGCCCAT
* * * * *
74784759 CCACCCTCCACACCACATAAGACCATGCTAGGCCCGT
1 CCACCCTACACACCACATATGACCATACTAAGCCCAT
74784796 CCACCCTACACACCACATATG
1 CCACCCTACACACCACATATG
74784817 GTGGAACTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 26 0.54
38 20 0.42
39 2 0.04
ACGTcount: A:0.31, C:0.43, G:0.10, T:0.16
Consensus pattern (37 bp):
CCACCCTACACACCACATATGACCATACTAAGCCCAT
Found at i:74785305 original size:21 final size:21
Alignment explanation
Indices: 74785281--74785333 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
74785271 AAACCCATAT
*
74785281 GCCCATGTGAAGGCTACACAC
1 GCCCATGTGAAGGCGACACAC
* *
74785302 GCCCATGTGGAGGGGACACAC
1 GCCCATGTGAAGGCGACACAC
*
74785323 GCCCGTGTGAA
1 GCCCATGTGAA
74785334 TAACTCGTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.13
Consensus pattern (21 bp):
GCCCATGTGAAGGCGACACAC
Found at i:74786538 original size:24 final size:25
Alignment explanation
Indices: 74786511--74786562 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
74786501 GCTTAGCCTC
74786511 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
74786535 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
74786560 TTT
1 TTT
74786563 CGCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:74786637 original size:21 final size:22
Alignment explanation
Indices: 74786613--74786670 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
74786603 AATGAGTATA
74786613 TCATAGCATATCATGTGCAT-C
1 TCATAGCATATCATGTGCATAC
*
74786634 TCATAACATATCATGTGCATAC
1 TCATAGCATATCATGTGCATAC
74786656 -CAT-GTCATATCATGT
1 TCATAG-CATATCATGT
74786671 ATAACAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATAGCATATCATGTGCATAC
Found at i:74789997 original size:65 final size:65
Alignment explanation
Indices: 74789893--74790023 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
74789883 AGTCCTATGC
*
74789893 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACAAGCATTCAGGTCAACCTT
74789958 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACAAGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACAAGCATTCAGGTCAACCTT
74790023 A
1 A
74790024 ACCCTAGGGA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACAAGCATTCAGGTCAACCTT
Found at i:74794907 original size:28 final size:28
Alignment explanation
Indices: 74794867--74794921 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
74794857 TCTTTTCTTT
74794867 TAATTTGTATTTTTGGTTGTGGATGAAA
1 TAATTTGTATTTTTGGTTGTGGATGAAA
74794895 TAATTTGTATTTTTGGTTGTGGATGAA
1 TAATTTGTATTTTTGGTTGTGGATGAA
74794922 CACAAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (28 bp):
TAATTTGTATTTTTGGTTGTGGATGAAA
Found at i:74795135 original size:21 final size:21
Alignment explanation
Indices: 74795095--74795133 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
74795085 TTTCAAAAGC
74795095 CAAATCAAATAGGTACTTTAA
1 CAAATCAAATAGGTACTTTAA
74795116 CAAA-CAAA-AGGCTACTTT
1 CAAATCAAATAGG-TACTTT
74795134 TACATTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 10 0.59
21 4 0.24
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (21 bp):
CAAATCAAATAGGTACTTTAA
Found at i:74812984 original size:34 final size:34
Alignment explanation
Indices: 74812940--74813007 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
74812930 TACGAGACCT
*
74812940 TAAAATATGCTTAAAAGAGGTTTAGGACTAAGCC
1 TAAAACATGCTTAAAAGAGGTTTAGGACTAAGCC
*
74812974 TAAAACATGCTTAAAAGAGGTTTGGGACTAAGCC
1 TAAAACATGCTTAAAAGAGGTTTAGGACTAAGCC
74813008 GATAACATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (34 bp):
TAAAACATGCTTAAAAGAGGTTTAGGACTAAGCC
Found at i:74813015 original size:34 final size:34
Alignment explanation
Indices: 74812941--74813015 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
74812931 ACGAGACCTT
* *
74812941 AAAATATGCTTAAAAGAGGTTTAGGACTAAGCCT
1 AAAACATGCTTAAAAGAGGTTTAGGACTAAGCCG
*
74812975 AAAACATGCTTAAAAGAGGTTTGGGACTAAGCCG
1 AAAACATGCTTAAAAGAGGTTTAGGACTAAGCCG
*
74813009 ATAACAT
1 AAAACAT
74813016 TTGCAAACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.24
Consensus pattern (34 bp):
AAAACATGCTTAAAAGAGGTTTAGGACTAAGCCG
Found at i:74815110 original size:79 final size:80
Alignment explanation
Indices: 74814977--74815168 Score: 260
Period size: 79 Copynumber: 2.4 Consensus size: 80
74814967 CGAATGATGT
* *
74814977 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGC-GAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
74815042 GTGCGAGTTACCAAAA
65 GTGCGAGCTACCAAAA
* * * *
74815058 CCGGGTTAAGTCCC-AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
** *
74815122 TGCGAGCTATTATAA
66 TGCGAGCTACCAAAA
* *
74815137 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGT
74815169 CGCTATATCC
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 56 0.58
80 27 0.28
81 13 0.14
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAGCTACCAAAA
Found at i:74815127 original size:40 final size:40
Alignment explanation
Indices: 74814976--74815168 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
74814966 TCGAATGATG
* * * *
74814976 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74815017 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74815057 ACCGGGTTAAGTCCC-AAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
74815096 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAGCTATTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * * *
74815137 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
74815169 CGCTATATCC
Statistics
Matches: 127, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 36 0.28
40 64 0.50
41 27 0.21
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74823499 original size:40 final size:40
Alignment explanation
Indices: 74823378--74823555 Score: 166
Period size: 40 Copynumber: 4.5 Consensus size: 40
74823368 GAGTCACGTA
* *
74823378 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTAGCACAATTG
* * ** *
74823417 CCTTCGTGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
*
74823457 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCAC-AATTG
* ** * *
74823497 CCTTCGGATCTTCGCCCGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTAGCACAATTG
* *
74823537 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74823556 GTATCATTCC
Statistics
Matches: 114, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 97 0.85
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
Found at i:74823515 original size:80 final size:80
Alignment explanation
Indices: 74823378--74823555 Score: 184
Period size: 80 Copynumber: 2.2 Consensus size: 80
74823368 GAGTCACGTA
* *
74823378 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTGCCTTCGTGTCTTAACCCGGATTTA
1 CCTTCGGG-TCTTAACCCGGATATAACAACAAGCACAATTGCCTTCGTGTCTTAACCCGGATATA
* * *
74823441 GTAACTTGCACAATTG
65 ATAACTAGCACAAATG
** **
74823457 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TGCCTTCG-GATCTTCGCCCGGATAT
1 CCTTCGGGTCTTAACCCGGATATAACAACAAGCAC-AATTGCCTTCGTG-TCTTAACCCGGATAT
* *
74823520 AATCACTAGCATAAATG
64 AATAACTAGCACAAATG
* *
74823537 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
74823556 GTATCATTCC
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 66 0.80
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (80 bp):
CCTTCGGGTCTTAACCCGGATATAACAACAAGCACAATTGCCTTCGTGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:74826438 original size:40 final size:40
Alignment explanation
Indices: 74826341--74826496 Score: 213
Period size: 40 Copynumber: 3.9 Consensus size: 40
74826331 TCGAATGATG
* * * * *
74826341 TCCGGGCTAATTCCCGAATGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
74826382 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74826422 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74826462 TCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTA
1 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTA
74826497 TTATAACCGG
Statistics
Matches: 101, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 76 0.75
41 25 0.25
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74826476 original size:80 final size:81
Alignment explanation
Indices: 74826342--74826527 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 81
74826332 CGAATGATGT
* * * *
74826342 CCGGGCTAATTCCCGAATGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
74826407 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * *
74826423 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
** *
74826487 GTGCGAGTTATTATAA
66 GTGCGAGTTACCAAAA
* * *
74826503 CCGGGCTATGTCTCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74826528 AGTGAGTCGC
Statistics
Matches: 90, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 66 0.73
81 24 0.27
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:74826520 original size:40 final size:39
Alignment explanation
Indices: 74826352--74826527 Score: 167
Period size: 40 Copynumber: 4.4 Consensus size: 39
74826342 CCGGGCTAAT
* * * * *
74826352 TCCCGAATGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT-
1 TCCCGAAGGCATTTGTGC-GAGTTACTAAA-CCGGGT-TATG
* *
74826393 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCATTTGTGCGAGTTA-CTAAACCGGGTTATG
74826433 TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAT-
1 TCCCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTT-ATG
* * *
74826473 TCCCGAAGGCAATTGTGCGAGTTATTATAACCGGGCTATG
1 TCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGTTATG
* *
74826513 TCTCGAAGGCTTTTG
1 TCCCGAAGGCATTTG
74826528 AGTGAGTCGC
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 7 0.06
40 84 0.74
41 23 0.20
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
TCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGTTATG
Found at i:74829828 original size:54 final size:53
Alignment explanation
Indices: 74829717--74829853 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 53
74829707 CCCTAATCAA
*** * **
74829717 TAAAATGACTACTTTTCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTAG
1 TAAAATGACTA-TTTTCCCTTATGTGGTAAAATGACTGAAATGCCCCTACATAG
* * *
74829771 TAAAATGATTGTTTTACCCTTATGTGGTAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGACTATTTT-CCCTTATGTGGTAAAATGACTGAAATGCCCCTACATAG
* *
74829825 TAAATTGACTATTTTGTCCTTATGTGGTA
1 TAAAATGACTATTTT-CCCTTATGTGGTA
74829854 TATGTTTATA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 4 0.06
54 64 0.94
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (53 bp):
TAAAATGACTATTTTCCCTTATGTGGTAAAATGACTGAAATGCCCCTACATAG
Found at i:74829852 original size:27 final size:27
Alignment explanation
Indices: 74829717--74829853 Score: 134
Period size: 27 Copynumber: 5.1 Consensus size: 27
74829707 CCCTAATCAA
74829717 TAAAATGACTACTTTT-CCCTTATGTGG
1 TAAAATGACTA-TTTTGCCCTTATGTGG
* *
74829744 TAAAATGACTGTTTTGCCCTTATGTAG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
74829771 TAAAATGATTGTTTTACCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
** * **
74829798 TAAAATGACTGA-AATGCCCCTACATGG
1 TAAAATGACT-ATTTTGCCCTTATGTGG
* *
74829825 TAAATTGACTATTTTGTCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
74829852 TA
1 TA
74829854 TATGTTTATA
Statistics
Matches: 87, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 5 0.06
27 82 0.94
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:74854002 original size:27 final size:27
Alignment explanation
Indices: 74853972--74854039 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
74853962 AGAGCATATG
* *
74853972 TGGGCCAAAGCCCATTACA-ATATCATT
1 TGGGCCAAAGCCCATAACAGA-ATCAAT
* *
74853999 TGGGTCACAGCCCATAACAGAATCAAT
1 TGGGCCAAAGCCCATAACAGAATCAAT
*
74854026 TGGGCC-TAGCCCAT
1 TGGGCCAAAGCCCAT
74854040 CGTAGTAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 7 0.21
27 26 0.76
28 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (27 bp):
TGGGCCAAAGCCCATAACAGAATCAAT
Found at i:74854805 original size:27 final size:27
Alignment explanation
Indices: 74854775--74854836 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
74854765 AAAAACAGTC
* *
74854775 ATTTTACCCTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
74854802 ATTTTACACTATAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
74854829 ATTTTACA
1 ATTTTACA
74854837 GTCCGGGGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:74856838 original size:40 final size:40
Alignment explanation
Indices: 74856781--74856997 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
74856771 TGGATGATAA
* * *
74856781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
74856821 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
74856861 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74856900 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74856940 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
74856980 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74856998 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 55 0.34
40 108 0.66
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74856913 original size:79 final size:80
Alignment explanation
Indices: 74856781--74856997 Score: 298
Period size: 79 Copynumber: 2.7 Consensus size: 80
74856771 TGGATGATAA
* * * * *
74856781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCTGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTC
74856845 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
*
74856861 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
74856925 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * *
74856940 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
74856998 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.01
79 87 0.70
80 36 0.29
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTACTATAT
Found at i:74856995 original size:119 final size:119
Alignment explanation
Indices: 74856781--74856997 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 119
74856771 TGGATGATAA
* * * *
74856781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCG
* *
74856846 TGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
66 AGCGAGTTACTATATCCGGGCTAAATCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74856900 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTC
*
74856964 GAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
65 GAGCGAGTTA-CTATATCCGGGCTAAAT-CCGAAGG
74856998 TACTTGGCTT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 9 0.11
119 76 0.89
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTTACTATATCCGGGCTAAATCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74867680 original size:41 final size:42
Alignment explanation
Indices: 74867612--74867704 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 42
74867602 GTTAAATAGA
*
74867612 ACTAAGTGTGCGAAATGGAATAGCTTCAGCTATAT-GA-GGC
1 ACTAAGTGTCCGAAATGGAATAGCTTCAGCTATATAGATGGC
* * * *
74867652 ACTAAGTGTCCGATATTGAGATAGCTTCAGTTATTTGAGATGGC
1 ACTAAGTGTCCGAAATGGA-ATAGCTTCAGCTATAT-AGATGGC
74867696 ACTAAGTGT
1 ACTAAGTGT
74867705 GTGGAGTCGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
40 16 0.36
41 14 0.32
43 2 0.05
44 12 0.27
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
ACTAAGTGTCCGAAATGGAATAGCTTCAGCTATATAGATGGC
Found at i:74873470 original size:24 final size:24
Alignment explanation
Indices: 74873420--74873473 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
74873410 AATCGAATTT
*
74873420 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
74873444 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
74873468 GCACAC
1 GCACAC
74873474 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:74877099 original size:40 final size:40
Alignment explanation
Indices: 74877062--74877246 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
74877052 GCTACTCGTT
*
74877062 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74877102 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
74877142 CAAATGCCTTC--GATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
74877181 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74877222 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74877247 CATCATTCGA
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.02
39 34 0.26
40 83 0.63
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74882816 original size:2 final size:2
Alignment explanation
Indices: 74882809--74882840 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
74882799 CGGCTCTAGC
74882809 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74882841 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74883638 original size:40 final size:40
Alignment explanation
Indices: 74883542--74883693 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74883532 CGAATGGTAT
* * * *
74883542 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
74883583 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
74883623 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
74883663 CCGGGCTATGTCCCGAAGGC-TTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74883694 CGCTATATCC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 9 0.10
40 60 0.64
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:74898095 original size:35 final size:35
Alignment explanation
Indices: 74898049--74898118 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
74898039 ATGAATATAA
* * *
74898049 AAAGCTGTTAGTTGGGATACTTGAGGTGAAAGAAT
1 AAAGCTATTAGTTGGGAGACTTGAGCTGAAAGAAT
74898084 AAAGCTATTAGTTGGGAGACTTGAGCTGAAAGAAT
1 AAAGCTATTAGTTGGGAGACTTGAGCTGAAAGAAT
74898119 TTGTAGTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (35 bp):
AAAGCTATTAGTTGGGAGACTTGAGCTGAAAGAAT
Found at i:74909314 original size:12 final size:12
Alignment explanation
Indices: 74909297--74909322 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74909287 TTACTAATGA
74909297 ATAAGTTCAGAT
1 ATAAGTTCAGAT
74909309 ATAAGTTCAGAT
1 ATAAGTTCAGAT
74909321 AT
1 AT
74909323 CGTTCTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (12 bp):
ATAAGTTCAGAT
Found at i:74911195 original size:40 final size:39
Alignment explanation
Indices: 74911046--74911197 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
74911036 AAAGTTCGAG
74911046 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
74911085 TGATATCTGGGCTAAGCCCCAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
74911124 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
74911163 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
74911198 GGTTACCATA
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 85 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:74911213 original size:40 final size:40
Alignment explanation
Indices: 74911052--74911227 Score: 169
Period size: 39 Copynumber: 4.5 Consensus size: 40
74911042 CGAGTGATAT
* ** *
74911052 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * * ** *
74911091 CTGGGCTAAG-CCCCAAGGCAATTGTGCGAGCTATGATAC
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
74911130 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
74911169 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
74911209 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74911228 TGTTTTGAAC
Statistics
Matches: 119, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 79 0.66
40 40 0.34
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:74912745 original size:29 final size:29
Alignment explanation
Indices: 74912713--74912848 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
74912703 ATACCCTTCG
** * *
74912713 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
74912742 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74912771 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
74912800 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74912829 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
74912849 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:74912840 original size:58 final size:58
Alignment explanation
Indices: 74912688--74912847 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
74912678 AATTTAAGCC
* *** * * ** * *
74912688 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
74912746 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
74912804 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
74912848 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:74920056 original size:29 final size:29
Alignment explanation
Indices: 74919928--74920056 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
74919918 CCTTCGAGCT
** * * *
74919928 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
74919957 TGCACACATAGTG-C--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
74919983 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74920012 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74920041 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
74920057 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 22 0.25
27 1 0.01
28 1 0.01
29 65 0.73
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:74926376 original size:38 final size:38
Alignment explanation
Indices: 74926283--74926430 Score: 221
Period size: 38 Copynumber: 3.9 Consensus size: 38
74926273 AATGTTCGAG
74926283 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA--A
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTA
74926319 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-TA
*
74926358 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-TA
* *
74926396 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
74926431 GGTTACCATA
Statistics
Matches: 103, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
36 35 0.34
38 36 0.35
39 15 0.15
40 17 0.17
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (38 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTA
Found at i:74926446 original size:40 final size:39
Alignment explanation
Indices: 74926283--74926460 Score: 211
Period size: 40 Copynumber: 4.6 Consensus size: 39
74926273 AATGTTCGAG
*
74926283 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA---A
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
74926319 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
74926358 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
74926396 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
74926436 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
74926461 TGTTTTGAAC
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
36 35 0.28
38 35 0.28
39 14 0.11
40 40 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:74928678 original size:40 final size:40
Alignment explanation
Indices: 74928623--74928739 Score: 173
Period size: 40 Copynumber: 3.0 Consensus size: 40
74928613 ATTTTGTCAA
* *
74928623 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
* *
74928662 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
* *
74928702 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
74928740 TACTGAACTT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 11 0.15
40 60 0.85
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
Found at i:74930148 original size:23 final size:23
Alignment explanation
Indices: 74930116--74930159 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
74930106 AAAATTTCAC
* *
74930116 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
74930139 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
74930160 TATTTTTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:74946235 original size:49 final size:49
Alignment explanation
Indices: 74946116--74946245 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 49
74946106 GCACATCAAA
* * * *
74946116 GTCGATTCCATGTCCCAGACAGGTTTTACAATGACTTTCATATATCGAG
1 GTCGATCCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
* * * * *
74946165 GCCGATGCC-TAT--CAGACAGGTCTTACACTGGCTCTCATCTATCG-G
1 GTCGATCCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
74946210 TGTCGATCCCATGTCCCAGACAGGTCTTACACTGAC
1 -GTCGATCCCATGTCCCAGACAGGTCTTACACTGAC
74946246 ACATAACAAG
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
45 1 0.02
46 34 0.52
47 2 0.03
48 2 0.03
49 26 0.40
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATCCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG
Found at i:74946386 original size:94 final size:94
Alignment explanation
Indices: 74946263--74946433 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 94
74946253 AAGCTAACGC
* * *
74946263 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTTGAGGCCAATGGATGTCCCAGACATGGT
1 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACAT-GT
74946328 -TTACACTGGCTCTCGTCTCAATGTTGATG
65 CTTACACTGGCTCTCGTCTCAATGTTGATG
* * * *
74946357 CATGTCCCAGACATGTTTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
74946422 TTACACTGGCTC
66 TTACACTGGCTC
74946434 CTGTAATGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
TTACACTGGCTCTCGTCTCAATGTTGATG
Found at i:74946417 original size:48 final size:48
Alignment explanation
Indices: 74946263--74946473 Score: 195
Period size: 48 Copynumber: 4.5 Consensus size: 48
74946253 AAGCTAACGC
* * * * *
74946263 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTTGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
* * ** * * **
74946311 GATGTCCCAGACATGGT-TTACACTGGC-TCT-CGTCTCAATGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTGTATATCTCGAGGCCGATG
*
74946357 CATGTCCCAGACATGTTTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
*
74946405 CATGTCCCAGACATGTCTTACACTGGCTCCTGTA-A--T-GTGGCCGAT-
1 CATGTCCCAGACATGTCTTACACTGGCT--TGTATATCTCGAGGCCGATG
*
74946450 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
74946474 AGCACACATA
Statistics
Matches: 133, Mismatches: 24, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
45 25 0.19
46 39 0.29
47 5 0.04
48 57 0.43
49 3 0.02
50 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
Found at i:74947075 original size:20 final size:19
Alignment explanation
Indices: 74947039--74947088 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
74947029 TATAGCAACT
*
74947039 CACATTTTCAATTATTTCA
1 CACATTTACAATTATTTCA
*
74947058 CACATTTACAACTTATTTTA
1 CACATTTACAA-TTATTTCA
74947078 CA-ACTTTACAA
1 CACA-TTTACAA
74947089 AATAGCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (19 bp):
CACATTTACAATTATTTCA
Found at i:74950407 original size:40 final size:41
Alignment explanation
Indices: 74950328--74950422 Score: 120
Period size: 40 Copynumber: 2.3 Consensus size: 41
74950318 GTACCTAAGA
* * * *
74950328 TGGGCTAAGGCCCTAATATATAGGTCTGATTTTGTATCTGAT
1 TGGGCTAAGGCCCTAATACATA-GTCTGATTCTGCATCTGAG
* *
74950370 TGGGCTAAGGCCCTAGTACAT-TTCTGATTCTGCATCTGAG
1 TGGGCTAAGGCCCTAATACATAGTCTGATTCTGCATCTGAG
74950410 TGGGCTAAGGCCC
1 TGGGCTAAGGCCC
74950423 ACACTGATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 28 0.60
42 19 0.40
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (41 bp):
TGGGCTAAGGCCCTAATACATAGTCTGATTCTGCATCTGAG
Found at i:74951759 original size:18 final size:19
Alignment explanation
Indices: 74951728--74951771 Score: 81
Period size: 18 Copynumber: 2.4 Consensus size: 19
74951718 ATACTGGCAT
74951728 ATAATAAGATATATAACTA
1 ATAATAAGATATATAACTA
74951747 ATAATAA-ATATATAACTA
1 ATAATAAGATATATAACTA
74951765 ATAATAA
1 ATAATAA
74951772 TGTGTAACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (19 bp):
ATAATAAGATATATAACTA
Found at i:74953141 original size:43 final size:42
Alignment explanation
Indices: 74953049--74953155 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
74953039 GAGATTTACG
* **
74953049 TGTAAGACCATGTCTGGGACATCGACATCATATATGATTTTA
1 TGTAAGACCCTGTCTGGGACATCGACATCATATATGATTGCA
* *
74953091 TGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTGCA
1 TGTAAGACCCTGTCTGGGACA-TCGACATC-ATATATGATTGCA
74953134 TGTAAGACCAC-GTCTGGGACAT
1 TGTAAGACC-CTGTCTGGGACAT
74953156 TAGCTTTGTA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 26 0.46
43 30 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACATCGACATCATATATGATTGCA
Found at i:74957209 original size:41 final size:41
Alignment explanation
Indices: 74957149--74957273 Score: 207
Period size: 41 Copynumber: 3.0 Consensus size: 41
74957139 ATGTATATAT
*
74957149 TAGTATTGTTGAATCGTGTGCATAATAAACCAGAAGTTTAC
1 TAGTATTTTTGAATCGTGTGCATAATAAACCAGAAGTTTAC
74957190 TAGTATTTTTGAAAT-GTGTGCATAATAAACCAGAAGTTTAC
1 TAGTATTTTTG-AATCGTGTGCATAATAAACCAGAAGTTTAC
* *
74957231 TAGTATTTTTGAATCGTGTGCGTAATAAATCAGAAGTTTAC
1 TAGTATTTTTGAATCGTGTGCATAATAAACCAGAAGTTTAC
74957272 TA
1 TA
74957274 AGTCTAAAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
40 3 0.04
41 73 0.92
42 3 0.04
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (41 bp):
TAGTATTTTTGAATCGTGTGCATAATAAACCAGAAGTTTAC
Found at i:74960702 original size:16 final size:16
Alignment explanation
Indices: 74960681--74960719 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
74960671 AGGACTAACA
*
74960681 TAGCTATTTGAGAGTC
1 TAGCTATGTGAGAGTC
74960697 TAGCTATGTGAGAGTC
1 TAGCTATGTGAGAGTC
74960713 TAGCTAT
1 TAGCTAT
74960720 ACATGCCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (16 bp):
TAGCTATGTGAGAGTC
Found at i:74962545 original size:40 final size:40
Alignment explanation
Indices: 74962490--74962699 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
74962480 AACATTGGAA
74962490 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74962530 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74962570 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
74962610 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
74962649 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
74962690 CTATATCCGG
1 ATATATCCGG
74962700 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:74969090 original size:40 final size:40
Alignment explanation
Indices: 74969035--74969187 Score: 306
Period size: 40 Copynumber: 3.8 Consensus size: 40
74969025 AACATTGGAA
74969035 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74969075 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74969115 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74969155 ATATATCCGGGCTAAGACCCGAAGGCATTCGTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTG
74969188 TTGATATATC
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:74974507 original size:39 final size:40
Alignment explanation
Indices: 74974329--74974511 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
74974319 CCGCACCAAG
* * * * * * * *
74974329 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
74974369 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
74974409 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
74974449 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
74974488 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74974512 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:74984038 original size:40 final size:40
Alignment explanation
Indices: 74983964--74984109 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74983954 CCGCACCAAG
* * * * * *
74983964 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
74984004 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
74984044 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
74984084 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
74984110 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:74984124 original size:40 final size:40
Alignment explanation
Indices: 74983996--74984147 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74983986 ATCACGATTT
* * * * *
74983996 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
74984036 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
74984076 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
74984116 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74984148 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:74986177 original size:2 final size:2
Alignment explanation
Indices: 74986170--74986201 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
74986160 TTTCAAAATA
74986170 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74986202 TCGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.