Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 254 of 345
Found at i:74990081 original size:43 final size:43
Alignment explanation
Indices: 74990033--74990187 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
74990023 CTAGCATTAC
74990033 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
74990076 GCCTGCTAGGCACGAAGGCCTGAATACACATCA-TCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
*
74990119 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
74990162 GCCTTCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
74990188 TAATACCAGC
Statistics
Matches: 106, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
42 1 0.01
43 105 0.99
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:74990236 original size:38 final size:38
Alignment explanation
Indices: 74990180--74990399 Score: 309
Period size: 38 Copynumber: 5.8 Consensus size: 38
74990170 GGCACGAAGG
* * * * *
74990180 CCCGAATATAATACCAGCACTAGGCCCGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
74990218 CCCAGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
74990256 CCCTGATATATTA-CAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * *
74990293 CCTGGATATATTACCAGCACGAAGCCTGCGAGA-TTAT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
74990330 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
74990368 CCCCGATATATTACCACCACGAAGCCTGCGGG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGG
74990400 TCTTTAGGCC
Statistics
Matches: 162, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
37 68 0.42
38 94 0.58
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:74990273 original size:75 final size:75
Alignment explanation
Indices: 74990180--74990399 Score: 307
Period size: 75 Copynumber: 2.9 Consensus size: 75
74990170 GGCACGAAGG
* * * * *
74990180 CCCGAATATAATACCAGCACTAGGCCCGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCT
74990245 GCGGGATTTAA
66 GCGGGA-TTAA
* **
74990256 CCCTGATATATTA-CAGCACAAAGCCTGCGGGATTTAACCTGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCT
* *
74990320 GCGAGATTAT
66 GCGGGATTAA
* * *
74990330 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCCGATATATTACCACCACGAAGCCT
1 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCT
74990395 GCGGG
66 GCGGG
74990400 TCTTTAGGCC
Statistics
Matches: 127, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
74 15 0.12
75 102 0.80
76 10 0.08
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (75 bp):
CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCAGATATATTACCAGCACGAAGCCT
GCGGGATTAA
Found at i:74993950 original size:48 final size:48
Alignment explanation
Indices: 74993897--74994009 Score: 131
Period size: 48 Copynumber: 2.3 Consensus size: 48
74993887 GTCCAACTAT
* * *
74993897 GGTCTTATACTAGCTCTGCTCTG-CCCGTGCTGATGCCTATTCCC-GATA
1 GGTCTTACACTAGCACT-CACTGACCCGTGCTGATGCCTA-TCCCAGATA
* *
74993945 GGTCTTACACTAGCACTCACTGAGCTGTGCTGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTCACTGACCCGTGCTGATGCCTATCCCAGATA
*
74993993 GGTCTTACGCTTAGCAC
1 GGTCTTACAC-TAGCAC
74994010 AAGTCGAGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
47 8 0.14
48 42 0.75
49 6 0.11
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (48 bp):
GGTCTTACACTAGCACTCACTGACCCGTGCTGATGCCTATCCCAGATA
Found at i:74997747 original size:49 final size:49
Alignment explanation
Indices: 74997687--74997991 Score: 483
Period size: 49 Copynumber: 6.3 Consensus size: 49
74997677 GTATGAGATA
*
74997687 TATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
74997736 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
74997785 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
74997834 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
74997883 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
74997930 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
74997977 TATAAATGTGATAAG
1 TATATATGTGATAAG
74997992 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 54 0.22
49 188 0.78
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:75000172 original size:40 final size:40
Alignment explanation
Indices: 75000117--75000459 Score: 364
Period size: 40 Copynumber: 8.1 Consensus size: 40
75000107 GAGAATTGAG
* *
75000117 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
75000157 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
75000197 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
**
75000237 AGTGATGTATCATTCATGCTAGTGATGTATCCGGGCTAGTCCGAAGAGCATTCATGCT
1 AGTGATGTATC---CGGGCTA---A-G--T---------TCCGAAGAGCATTCATGCT
75000295 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
75000335 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
*
75000375 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* ** *
75000415 AGTGATGTATCCGTGCTAA-ACCCTGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTTCC-GAAGAGCATTCATGCT
*
75000455 GGTGA
1 AGTGA
75000460 CGTGTATTCG
Statistics
Matches: 263, Mismatches: 21, Indels: 38
0.82 0.07 0.12
Matches are distributed among these distances:
39 2 0.01
40 217 0.83
43 5 0.02
47 1 0.00
49 2 0.01
51 1 0.00
52 1 0.00
55 5 0.02
58 29 0.11
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
Found at i:75000252 original size:20 final size:20
Alignment explanation
Indices: 75000227--75000267 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
75000217 TCCCGAAGAG
75000227 CATTCATGCTAGTGATGTAT
1 CATTCATGCTAGTGATGTAT
75000247 CATTCATGCTAGTGATGTAT
1 CATTCATGCTAGTGATGTAT
75000267 C
1 C
75000268 CGGGCTAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (20 bp):
CATTCATGCTAGTGATGTAT
Found at i:75000305 original size:58 final size:60
Alignment explanation
Indices: 75000187--75000305 Score: 224
Period size: 58 Copynumber: 2.0 Consensus size: 60
75000177 TTCCGAAGAG
75000187 CATTCATGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CATTCATGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGTGATGTAT
75000247 CATTCATGCTAGTGATGTATCCGGGCTA-GT-CCGAAGAGCATTCATGCTAGTGATGTAT
1 CATTCATGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGTGATGTAT
75000305 C
1 C
75000306 CGGGCTAAGT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 29 0.49
59 2 0.03
60 28 0.47
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (60 bp):
CATTCATGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:75000321 original size:98 final size:100
Alignment explanation
Indices: 75000147--75000345 Score: 348
Period size: 98 Copynumber: 2.0 Consensus size: 100
75000137 TTCCGAAGAG
75000147 CATTCATGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CATTCATGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
*
75000212 CTAGGTCCCGAAGAGCATTCATGCTAGTGATGTAT
66 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* *
75000247 CATTCATGCTAGTGATGTATCCGGGCT-AG-TCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CATTCATGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
*
75000310 CTAAGTTCCGAAGAGCATTCATGCTAGTGATGTAT
66 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
75000345 C
1 C
75000346 CGGGCTAGGT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 68 0.72
99 2 0.02
100 25 0.26
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
CATTCATGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:75003943 original size:49 final size:49
Alignment explanation
Indices: 75003883--75004187 Score: 492
Period size: 49 Copynumber: 6.3 Consensus size: 49
75003873 GTATGAGATA
75003883 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
75003932 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
75003981 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
75004030 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
75004079 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
75004126 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
75004173 TATAAATGTGATAAG
1 TATATATGTGATAAG
75004188 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 54 0.22
49 189 0.78
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:75005944 original size:43 final size:44
Alignment explanation
Indices: 75005883--75005991 Score: 195
Period size: 43 Copynumber: 2.5 Consensus size: 44
75005873 GCATTACGTC
*
75005883 TGCTAGGCACGAAGGCCCGAATACACATCACTGGTACGAAG-CT
1 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCCT
75005926 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCCT
1 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCCT
75005970 T-CTAGGCACGAAGGCCCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
75005992 TAATACCAAC
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
43 61 0.95
44 3 0.05
ACGTcount: A:0.30, C:0.29, G:0.26, T:0.15
Consensus pattern (44 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCCT
Found at i:75006049 original size:38 final size:38
Alignment explanation
Indices: 75005984--75006166 Score: 287
Period size: 38 Copynumber: 4.8 Consensus size: 38
75005974 GGCACGAAGG
* * * * *
75005984 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
75006022 CCCGGATATATTACCAGCGCGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
75006060 CCCGGATATATTA-CAGCACGAAGCCTGCGGGCTTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
75006097 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
75006135 CCCGGATATATTACCAGTACGAAGCCTGCGGG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGG
75006167 TCTTTAGGCC
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
37 35 0.26
38 99 0.74
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:75006096 original size:75 final size:76
Alignment explanation
Indices: 75005984--75006182 Score: 292
Period size: 75 Copynumber: 2.6 Consensus size: 76
75005974 GGCACGAAGG
* * * * * * *
75005984 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCGCGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGCTTTAACCCGGATATATTACCAGCACGAAGCCT
75006049 GCGGGATTTAA
66 GCGGGATTTAA
75006060 CCCGGATATATTA-CAGCACGAAGCCTGCGGGCTTTAACCCGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGCTTTAACCCGGATATATTACCAGCACGAAGCCT
75006124 GCGGGATTTAA
66 GCGGGATTTAA
* *
75006135 CCCGGATATATTACCAGTACGAAGCCTGCGGGTCTTTAGGCCCGGATA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGG-CTTTA-ACCCGGATA
75006183 CACATCAAAT
Statistics
Matches: 111, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
75 70 0.63
76 28 0.25
77 5 0.05
78 8 0.07
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (76 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGCTTTAACCCGGATATATTACCAGCACGAAGCCT
GCGGGATTTAA
Found at i:75009563 original size:26 final size:26
Alignment explanation
Indices: 75009527--75009636 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
75009517 TGATACAAAT
75009527 TGATAATAGGTTAGGTAAATG-TTCTA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
75009553 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
75009579 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
75009605 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
75009631 TGATAA
1 TGATAA
75009637 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:75011299 original size:27 final size:26
Alignment explanation
Indices: 75011259--75011417 Score: 183
Period size: 27 Copynumber: 5.9 Consensus size: 26
75011249 AGGAAGCGTC
*
75011259 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
75011286 CTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
75011313 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
75011340 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
75011367 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCT-GAT
* *
75011395 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
75011418 ATTCTGGCAG
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
26 3 0.03
27 92 0.81
28 18 0.16
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:75011341 original size:54 final size:54
Alignment explanation
Indices: 75011259--75011424 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
75011249 AGGAAGCGTC
*
75011259 CTGGTGGCTATGCCACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
75011313 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * * *
75011367 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGGCTCTGCCACATATATCTGTT
75011421 CTGG
1 CTGG
75011425 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 84 0.82
55 18 0.18
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:75016248 original size:48 final size:48
Alignment explanation
Indices: 75016075--75016251 Score: 214
Period size: 48 Copynumber: 3.7 Consensus size: 48
75016065 TAAAGTACCA
* ** *
75016075 ATGCCATGTCCTC-GACATGGTCTTACATGAATC-CATATATCATTGCCG
1 ATGCCATGTCC-CAGACATGGTCTTACA-CAGGCACATATATCATCGCCG
* * * * *
75016123 ATGCCATATCCAAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
* * *
75016171 ACGCCATGTTCCAGACATGGTCTTGCACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
75016219 ATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCA
75016252 TATACAGCAT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 106 0.99
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCG
Found at i:75018689 original size:40 final size:40
Alignment explanation
Indices: 75018630--75018837 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
75018620 CATTGGAATG
* * *
75018630 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
75018670 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
75018710 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
75018750 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
75018790 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
75018830 ATATCCGG
1 ATATCCGG
75018838 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:75026914 original size:29 final size:29
Alignment explanation
Indices: 75026824--75026983 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
75026814 ACTCGATTTC
* * **
75026824 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
75026853 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
75026881 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
75026911 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75026940 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75026969 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
75026984 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:75032736 original size:27 final size:26
Alignment explanation
Indices: 75032706--75032767 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 26
75032696 TTTAAAACCC
75032706 TAGGGGTATATCGATAATTTTGCTCTT
1 TAGGGGTATATCGATAATTTTGCTC-T
* *
75032733 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGATAATTTTGCTCT
75032760 TAGGGGTA
1 TAGGGGTA
75032768 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.47
28 16 0.50
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGATAATTTTGCTCT
Found at i:75032770 original size:27 final size:28
Alignment explanation
Indices: 75032706--75032773 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
75032696 TTTAAAACCC
*
75032706 TAGGGGT-ATATCGATAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTTTGCTCTT
*
75032733 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGATAATTTTGCTCTT
75032760 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75032774 TGATCTAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTTTGCTCTT
Found at i:75033437 original size:27 final size:27
Alignment explanation
Indices: 75033406--75033566 Score: 205
Period size: 27 Copynumber: 6.0 Consensus size: 27
75033396 TTCTACCCTA
*
75033406 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
75033433 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
75033460 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
75033487 CAAGGGTATTTTAGCAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
75033514 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
75033541 CAAGGGTATTTTGGTAATTCTATAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
75033567 TTGAAGGTAA
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:75033476 original size:54 final size:54
Alignment explanation
Indices: 75033409--75033559 Score: 239
Period size: 54 Copynumber: 2.8 Consensus size: 54
75033399 TACCCTACAA
* *
75033409 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
75033463 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGCAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
75033517 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
75033560 CTATAAATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:75033815 original size:27 final size:28
Alignment explanation
Indices: 75033552--75033801 Score: 295
Period size: 27 Copynumber: 9.3 Consensus size: 28
75033542 AAGGGTATTT
* * *
75033552 TGGTAATTCTATAAA-TTGAAGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
* *
75033579 CGGTAATTCTGTAAA-TTGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
* *
75033606 TGATAATTCTATAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
* *
75033633 TAGTAATTATGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
75033660 TGGTAATTCTGTAAA-TCGAGGATAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
75033687 TAGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
75033714 CGGTAATT-TGTAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
**
75033740 CAGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
75033767 TGGTAATTCTATAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
75033794 TGGTAATT
1 TGGTAATT
75033802 TTACAAGTCG
Statistics
Matches: 194, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.01
26 25 0.13
27 165 0.85
28 3 0.02
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (28 bp):
TGGTAATTCTGTAAACTCGAGGGTAAAA
Found at i:75033815 original size:54 final size:54
Alignment explanation
Indices: 75033552--75033801 Score: 376
Period size: 54 Copynumber: 4.6 Consensus size: 54
75033542 AAGGGTATTT
* * ** *
75033552 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
75033606 TGATAATTCTATAAATCGAGGGTAAAATAGTAATTATGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
75033660 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* * *
75033714 CGGTAATT-TGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
75033767 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATT
75033802 TTACAAGTCG
Statistics
Matches: 177, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 50 0.28
54 127 0.72
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:75033815 original size:107 final size:107
Alignment explanation
Indices: 75033552--75033801 Score: 376
Period size: 107 Copynumber: 2.3 Consensus size: 107
75033542 AAGGGTATTT
* * * *
75033552 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGATAATTCTA
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAA-TGAGGGTAAAACGATAATTCTA
*
75033617 TAAATCGAGGGTAAAATAGTAATTATGTAAACTGAGGGTAAAA
65 TAAATCGAGGGTAAAACAGTAATTATGTAAACTGAGGGTAAAA
* * * * *
75033660 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATT-TG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAA-TGAGGGTAAAACGATAATTCTA
*
75033724 TAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
65 TAAATCGAGGGTAAAACAGTAATTATGTAAACTGAGGGTAAAA
75033767 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
75033802 TTACAAGTCG
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 74 0.58
108 53 0.42
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (107 bp):
TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATGAGGGTAAAACGATAATTCTAT
AAATCGAGGGTAAAACAGTAATTATGTAAACTGAGGGTAAAA
Found at i:75038114 original size:29 final size:29
Alignment explanation
Indices: 75038024--75038183 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
75038014 ACTCGATTTC
* * **
75038024 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
75038053 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
75038081 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
75038111 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75038140 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75038169 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
75038184 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:75039506 original size:25 final size:23
Alignment explanation
Indices: 75039471--75039518 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
75039461 ATCCACACTC
75039471 TTTTTTTTTTCATCATTTTCCTT
1 TTTTTTTTTTCATCATTTTCCTT
* *
75039494 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
75039519 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTTTTTCATCATTTTCCTT
Found at i:75043307 original size:28 final size:28
Alignment explanation
Indices: 75043275--75043339 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
75043265 ATTTACTAGA
*
75043275 ATACCCCTATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATGACCATT
* * *
75043303 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGAAAAATGACCATT
75043331 ATACCCCTA
1 ATACCCCTA
75043340 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCATT
Found at i:75043486 original size:28 final size:27
Alignment explanation
Indices: 75043445--75043534 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
75043435 AGGAAGCGTC
*
75043445 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
75043473 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
75043500 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
75043529 CTGGTG
1 CTGGTG
75043535 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:75043503 original size:27 final size:28
Alignment explanation
Indices: 75043445--75043534 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
75043435 AGGAAGCGTC
* *
75043445 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
75043473 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
75043500 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
75043529 CTGGTG
1 CTGGTG
75043535 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:75043545 original size:29 final size:28
Alignment explanation
Indices: 75043455--75043545 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
75043445 CTGGTGGCTA
* * * *
75043455 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
75043483 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
75043510 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
75043539 TGTCACA
1 TGCCACA
75043546 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:75043553 original size:55 final size:56
Alignment explanation
Indices: 75043445--75043560 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
75043435 AGGAAGCGTC
* * *
75043445 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
75043500 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
75043556 CTGGT
1 CTGGT
75043561 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:75052338 original size:20 final size:20
Alignment explanation
Indices: 75052313--75052350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75052303 TAAGCTTATG
*
75052313 CTAAGTAAATGGAATGGTAA
1 CTAAGTAAATGAAATGGTAA
*
75052333 CTAAGTAGATGAAATGGT
1 CTAAGTAAATGAAATGGT
75052351 TCATCATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.26
Consensus pattern (20 bp):
CTAAGTAAATGAAATGGTAA
Found at i:75053665 original size:28 final size:28
Alignment explanation
Indices: 75053622--75053677 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
75053612 TGGCCACACG
75053622 ACCGTGTGAACCCTGCAATGTAAATTTT
1 ACCGTGTGAACCCTGCAATGTAAATTTT
* *
75053650 ACCGTGTGAACTCTGCAATGTGAATTTT
1 ACCGTGTGAACCCTGCAATGTAAATTTT
75053678 TCTATCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (28 bp):
ACCGTGTGAACCCTGCAATGTAAATTTT
Found at i:75057227 original size:27 final size:26
Alignment explanation
Indices: 75057179--75057230 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75057169 GCGAGGCTGC
*
75057179 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
75057205 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
75057231 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75066173 original size:6 final size:6
Alignment explanation
Indices: 75066155--75066263 Score: 80
Period size: 6 Copynumber: 17.8 Consensus size: 6
75066145 AAGAAACATT
* *
75066155 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
75066202 GTGACAAA ATCAGA ATCAGT ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
75066253 ATCAGT ATCAG
1 ATCAGA ATCAG
75066264 GTAACAGAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.05
6 71 0.87
7 5 0.06
8 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75066213 original size:31 final size:31
Alignment explanation
Indices: 75066155--75066269 Score: 128
Period size: 31 Copynumber: 3.7 Consensus size: 31
75066145 AAGAAACATT
75066155 ATCAGAA-CTAGAATCA-G-AATCAAAATCAGA
1 ATCAGAATC-AGAATCAGGTAA-CAAAATCAGA
* *
75066185 ATCAGAATCAGAATTAGGTGACAAAATCAGA
1 ATCAGAATCAGAATCAGGTAACAAAATCAGA
* * * *
75066216 ATCAGTATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTAACAAAATCAGA
*
75066247 ATCAGAATCAGTATCAGGTAACA
1 ATCAGAATCAGAATCAGGTAACA
75066270 GAATAAAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
30 13 0.18
31 59 0.81
32 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAAAATCAGA
Found at i:75066270 original size:31 final size:31
Alignment explanation
Indices: 75066178--75066278 Score: 130
Period size: 31 Copynumber: 3.3 Consensus size: 31
75066168 TCAGAATCAA
* * * * *
75066178 AATCAGAATCAGAATCAGAATTAGGTGACAA
1 AATCAAAATCAGAATCAGTATCAGGTAACAG
* *
75066209 AATCAGAATCAGTATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGTATCAGGTAACAG
75066240 AATCAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGTATCAGGTAACAG
*
75066271 AATAAAAA
1 AATCAAAA
75066279 ATCAAAATGT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGTATCAGGTAACAG
Found at i:75066466 original size:27 final size:26
Alignment explanation
Indices: 75066423--75066524 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
75066413 GCTCAGTTAT
** *
75066423 CAGATATTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
75066450 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
75066476 CAAATATTTGTGGCATAGCCACCAGAA
1 CAGATA-TTGTGGCAGAGCCACCAGAA
* *
75066503 TCAGATAATGTGGCAAAGCCAC
1 -CAGATATTGTGGCAGAGCCAC
75066525 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 54 0.83
28 5 0.08
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:75067098 original size:27 final size:27
Alignment explanation
Indices: 75067068--75067428 Score: 429
Period size: 27 Copynumber: 13.4 Consensus size: 27
75067058 GGGGCAAAAT
* *
75067068 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* **
75067095 GGTAATTCTACCTTACAGGGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
75067122 AGTATTTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
75067149 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
75067176 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
75067203 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
75067230 AGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
75067257 AGTAATTCTACCTTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
75067284 AGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
75067311 GATAATTCTACCTTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
75067337 AGTAATTATACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
75067364 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
75067391 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
75067418 AGTAATTCTAC
1 GGTAATTCTAC
75067429 AAACCAAGGG
Statistics
Matches: 281, Mismatches: 51, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.08
27 257 0.91
28 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:75067467 original size:81 final size:78
Alignment explanation
Indices: 75067070--75067470 Score: 319
Period size: 81 Copynumber: 5.0 Consensus size: 78
75067060 GGCAAAATGG
* * * * * ** ** *
75067070 TAATTTTACCCTA-AGAGGGTATCTCGGTAATTCTACCTTACAGGGGTAAATCAGTATTTCTAAC
1 TAATTCTACCCTACAG-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAA-
75067134 CTACAAGGGTATTTCGA
64 C--CAAGGGTATTTCGA
* * *
75067151 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCT-ACC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAACC
75067215 TTACAGGGGTATTTC-A
66 --A-A-GGGTATTTCGA
* * * * ** * *
75067231 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCTTA-TAGGGTTATTTCAGTAATTATAC
1 -TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGG-TATTTTGGTAATTCTAA
75067295 CCTACAGGGGTATTTCGA
64 CC-A-A-GGGTATTTCGA
* * * *
75067313 TAATTCTACCTTACA-GGGTATTTCAGTAATTATACCCTACAGGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAACC
75067377 TACAGGGGTATTTCGA
66 -A-A-GGGTATTTCGA
* ** *
75067393 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTA-CAAACCAAGGGTATTTTGGTAATTTTGTA
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA-CAAGGGTATTTTGGTAA--TTCT-
75067457 AACCAAGGGTATTT
62 AACCAAGGGTATTT
75067471 TAGTAATTTT
Statistics
Matches: 269, Mismatches: 36, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
77 1 0.00
79 2 0.01
80 76 0.28
81 177 0.66
82 6 0.02
83 4 0.01
84 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (78 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAACC
AAGGGTATTTCGA
Found at i:75067479 original size:27 final size:26
Alignment explanation
Indices: 75067409--75067484 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
75067399 TACCCTACAG
**
75067409 GGGTATTTTAGTAATTCTACAAACCAA
1 GGGTATTTTAGTAATT-TTTAAACCAA
*
75067436 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTT-TAAACCAA
75067463 GGGTATTTTAGTAATTTTTAAA
1 GGGTATTTTAGTAATTTTTAAA
75067485 TCGAGAGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.11
27 39 0.89
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTTAAACCAA
Found at i:75067512 original size:27 final size:27
Alignment explanation
Indices: 75067481--75067601 Score: 161
Period size: 27 Copynumber: 4.5 Consensus size: 27
75067471 TAGTAATTTT
* *
75067481 TAAATCGAGAGTAAAACAATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
* *
75067508 TAAATCGAGGGTAAAACGGTAGTTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
* * * *
75067535 TAAATTGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTG
*
75067562 TAAATCGAGGGTAAAATGATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
75067589 TAAATCGAGGGTA
1 TAAATCGAGGGTA
75067602 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTG
Found at i:75067621 original size:81 final size:80
Alignment explanation
Indices: 75067473--75067625 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 80
75067463 GGGTATTTTA
* * **
75067473 GTAATTTTTAAATCGAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAGTTCTGTAA
1 GTAATTTATAAATCGAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAA
75067538 ATTGAGGGTAAAATG
66 ATTGAGGGTAAAATG
* ** **** *
75067553 GTAATTCTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACA
1 GTAATT-TATAAATCGAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
75067618 AATTGAGG
65 AATTGAGG
75067626 ACATTTTATA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
80 6 0.10
81 54 0.90
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (80 bp):
GTAATTTATAAATCGAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAA
ATTGAGGGTAAAATG
Found at i:75071245 original size:71 final size:67
Alignment explanation
Indices: 75071115--75071247 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 67
75071105 CTTCTGGCAA
* * * *
75071115 CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTGTTCTGGTGACTTCGTCACAATATCTGGT
1 CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTATTCTGGTGACCTAGCCACAATATCTGGT
75071180 AG
66 AG
* *
75071182 CCTCGCTGCAATCTGGTGGCTTCTGCACATATATATATCTATTCTGGTGGCCTAGCCACAATATC
1 CCTCGCTGCAATCTGGTGGCCTC-GC-C--ATATATATCTATTCTGGTGACCTAGCCACAATATC
75071247 T
62 T
75071248 ATATCTGGTG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
67 22 0.39
68 2 0.04
69 1 0.02
71 31 0.55
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (67 bp):
CCTCGCTGCAATCTGGTGGCCTCGCCATATATATCTATTCTGGTGACCTAGCCACAATATCTGGT
AG
Found at i:75071268 original size:27 final size:26
Alignment explanation
Indices: 75071216--75071274 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
75071206 GCACATATAT
*
75071216 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
75071242 ATATCTATATCTGGTGACTTCGGCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
75071269 ATATCT
1 ATATCT
75071275 GGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:75074126 original size:2 final size:2
Alignment explanation
Indices: 75074119--75074155 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
75074109 AAGTAACAAG
75074119 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75074156 GTTTTCGGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75077690 original size:17 final size:17
Alignment explanation
Indices: 75077656--75077697 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
75077646 ATTGATAACA
75077656 TATAAAAATTTCAAAACT
1 TATAAAAATTTC-AAACT
75077674 TATAAAAATTTTC-AACT
1 TATAAAAA-TTTCAAACT
*
75077691 TTTAAAA
1 TATAAAA
75077698 GGTCACACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 8 0.36
19 4 0.18
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAAAAATTTCAAACT
Found at i:75080428 original size:43 final size:43
Alignment explanation
Indices: 75080375--75080467 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 43
75080365 CTAGTGGCAG
* *
75080375 TTTATCTGCAAATATGATGTGCACCCACAGCCTAATGGCAATT
1 TTTATCTGCAAATATGATATGCACCCACAACCTAATGGCAATT
* * * * * *
75080418 TTTATCTGCAAGTATGTTATGCACCCATAACCTAGTGGTAGTT
1 TTTATCTGCAAATATGATATGCACCCACAACCTAATGGCAATT
75080461 TTTATCT
1 TTTATCT
75080468 ATAAATATAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (43 bp):
TTTATCTGCAAATATGATATGCACCCACAACCTAATGGCAATT
Found at i:75080523 original size:10 final size:10
Alignment explanation
Indices: 75080508--75080539 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
75080498 GCAGTTTATA
75080508 AGGATGTATG
1 AGGATGTATG
*
75080518 AGGATGTATA
1 AGGATGTATG
75080528 AGGATGTATG
1 AGGATGTATG
75080538 AG
1 AG
75080540 TTCAGGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (10 bp):
AGGATGTATG
Found at i:75081584 original size:21 final size:19
Alignment explanation
Indices: 75081541--75081584 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
75081531 CCTTACATGT
75081541 ACACACGATTCCACTAATC
1 ACACACGATTCCACTAATC
*
75081560 ACACACGGTTCCACTAATC
1 ACACACGATTCCACTAATC
*
75081579 AGACAC
1 ACACAC
75081585 CATTAACGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.36, G:0.09, T:0.18
Consensus pattern (19 bp):
ACACACGATTCCACTAATC
Found at i:75086425 original size:251 final size:251
Alignment explanation
Indices: 75085982--75086486 Score: 1010
Period size: 251 Copynumber: 2.0 Consensus size: 251
75085972 CATTTATGCT
75085982 TACACAATTGCTTTATGAGTATATAATTTGTTTCATACTAGTTACTATTCATGAGCATTAATATT
1 TACACAATTGCTTTATGAGTATATAATTTGTTTCATACTAGTTACTATTCATGAGCATTAATATT
75086047 TCAAGAAATAAAAGTATATGATACTCATGAAATTTAGAACAATTTCTCTGCCAAAGAAATTAGAA
66 TCAAGAAATAAAAGTATATGATACTCATGAAATTTAGAACAATTTCTCTGCCAAAGAAATTAGAA
75086112 GACAAGGATAGATATGTAAACCACAACAGTGTATGGCCTAGAAAGTGCTTAAATAAATTGAACAG
131 GACAAGGATAGATATGTAAACCACAACAGTGTATGGCCTAGAAAGTGCTTAAATAAATTGAACAG
75086177 AATAGAAGGAAAGATGTTCAAAACCTGCCAACTTTATGTGCGGAACAATCTCTTTA
196 AATAGAAGGAAAGATGTTCAAAACCTGCCAACTTTATGTGCGGAACAATCTCTTTA
75086233 TACACAATTGCTTTATGAGTATATAATTTGTTTCATACTAGTTACTATTCATGAGCATTAATATT
1 TACACAATTGCTTTATGAGTATATAATTTGTTTCATACTAGTTACTATTCATGAGCATTAATATT
75086298 TCAAGAAATAAAAGTATATGATACTCATGAAATTTAGAACAATTTCTCTGCCAAAGAAATTAGAA
66 TCAAGAAATAAAAGTATATGATACTCATGAAATTTAGAACAATTTCTCTGCCAAAGAAATTAGAA
75086363 GACAAGGATAGATATGTAAACCACAACAGTGTATGGCCTAGAAAGTGCTTAAATAAATTGAACAG
131 GACAAGGATAGATATGTAAACCACAACAGTGTATGGCCTAGAAAGTGCTTAAATAAATTGAACAG
75086428 AATAGAAGGAAAGATGTTCAAAACCTGCCAACTTTATGTGCGGAACAATCTCTTTA
196 AATAGAAGGAAAGATGTTCAAAACCTGCCAACTTTATGTGCGGAACAATCTCTTTA
75086484 TAC
1 TAC
75086487 CGTGCAAGAG
Statistics
Matches: 254, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
251 254 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.30
Consensus pattern (251 bp):
TACACAATTGCTTTATGAGTATATAATTTGTTTCATACTAGTTACTATTCATGAGCATTAATATT
TCAAGAAATAAAAGTATATGATACTCATGAAATTTAGAACAATTTCTCTGCCAAAGAAATTAGAA
GACAAGGATAGATATGTAAACCACAACAGTGTATGGCCTAGAAAGTGCTTAAATAAATTGAACAG
AATAGAAGGAAAGATGTTCAAAACCTGCCAACTTTATGTGCGGAACAATCTCTTTA
Found at i:75089620 original size:15 final size:16
Alignment explanation
Indices: 75089600--75089637 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
75089590 AAATTCCACT
75089600 AGAAAATAAGCAA-AA
1 AGAAAATAAGCAATAA
*
75089615 AGAAAA-CAGCAATAA
1 AGAAAATAAGCAATAA
75089630 AGAAAATA
1 AGAAAATA
75089638 TTAACTCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.71, C:0.08, G:0.13, T:0.08
Consensus pattern (16 bp):
AGAAAATAAGCAATAA
Found at i:75093300 original size:14 final size:14
Alignment explanation
Indices: 75093281--75093310 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75093271 TTTAGGACAT
75093281 GCCCGTATGGGCAG
1 GCCCGTATGGGCAG
75093295 GCCCGTATGGGCAG
1 GCCCGTATGGGCAG
75093309 GC
1 GC
75093311 TGTGTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.30, G:0.43, T:0.13
Consensus pattern (14 bp):
GCCCGTATGGGCAG
Found at i:75106876 original size:244 final size:244
Alignment explanation
Indices: 75106440--75106929 Score: 890
Period size: 244 Copynumber: 2.0 Consensus size: 244
75106430 TCAAGGTAAA
*
75106440 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTAATGGTAAACACA
1 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCATAATGGTAAACACA
*
75106505 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGTAACTAAAGTAGTCTGACAGGATGTTAAA
66 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
*
75106570 AATAGATAGCCTATCAAGATGATAAAAATATGCAGTTCGACGGGACATTAAAGACGGGGTCATCT
131 AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
75106635 GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
196 GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
* * * *
75106684 TAGGATTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCTACCATGATGGTAAACACG
1 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCATAATGGTAAACACA
*
75106749 GGAAATATAAGGTGTAAAACCATAGTTGGACTATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
66 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
* *
75106814 CATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACTGGGTCATCT
131 AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
75106879 GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
196 GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
75106928 TA
1 TA
75106930 TGGAAATGAG
Statistics
Matches: 236, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
244 236 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (244 bp):
TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCATAATGGTAAACACA
GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
Found at i:75109001 original size:36 final size:36
Alignment explanation
Indices: 75108954--75109023 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
75108944 TTTGACCCAG
*
75108954 TACTCTGTAATGTAATCCAACCCGATTCAGTTTTTA
1 TACTCTGTAATGTAATCCAACCCGATTCAATTTTTA
75108990 TACTCTGTAATGTAATCCAACCCGATTCAATTTT
1 TACTCTGTAATGTAATCCAACCCGATTCAATTTT
75109024 CTATTTTCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (36 bp):
TACTCTGTAATGTAATCCAACCCGATTCAATTTTTA
Found at i:75109118 original size:26 final size:25
Alignment explanation
Indices: 75109088--75109148 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
75109078 ATTTTTCTCC
*
75109088 AGTAAAATTTAGATGATTTTACCCAT
1 AGTAAAATTTAGACGATTTTACCC-T
75109114 AGTAAAATTTAGACGATTTTACCCT
1 AGTAAAATTTAGACGATTTTACCCT
*
75109139 TGTAAAATTT
1 AGTAAAATTT
75109149 TGAGAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
25 10 0.30
26 23 0.70
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (25 bp):
AGTAAAATTTAGACGATTTTACCCT
Found at i:75113595 original size:42 final size:42
Alignment explanation
Indices: 75113494--75113612 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
75113484 ACATCGATGT
* * * * * *
75113494 CATATCCCAGATATGGTCTTATACGAATTCTCATTTCGACGC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCAACGA
* * **
75113536 CATGTCCTAGACGTGGTCTTACATGAAATCTCATATCAACGA
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCAACGA
*
75113578 CATATCCCATATATGGTCTTACATGATAA-CTCATA
1 CATATCCCAGATATGGTCTTACATGA-AATCTCATA
75113613 CTGATGCCGA
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 59 0.97
43 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATATCAACGA
Found at i:75116226 original size:15 final size:16
Alignment explanation
Indices: 75116206--75116235 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75116196 TGGTGCCTTG
75116206 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
75116221 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
75116236 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:75120227 original size:46 final size:46
Alignment explanation
Indices: 75120177--75120352 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75120167 TGGCTGAGCA
75120177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75120223 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75120268 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75120316 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75120353 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75120333 original size:93 final size:93
Alignment explanation
Indices: 75120174--75120345 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
75120164 GGATGGCTGA
* * *
75120174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75120239 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75120267 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75120332 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75120346 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75128975 original size:20 final size:19
Alignment explanation
Indices: 75128939--75128988 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
75128929 AAGGGTTATT
75128939 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTAAAATAA
*
75128958 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTAAAATAA
*
75128978 TTGAAAATGTG
1 TTGTAAATGTG
75128989 AGTTGCTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 10 0.37
20 16 0.59
21 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
TTGTAAATGTGTAAAATAA
Found at i:75129614 original size:49 final size:49
Alignment explanation
Indices: 75129549--75129730 Score: 188
Period size: 49 Copynumber: 3.7 Consensus size: 49
75129539 TGCTGTGTGT
* *
75129549 CAGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
** * * * *
75129598 CAGTGTAAGACCTGTCTCAGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * * * **
75129647 CAATGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * *
75129694 CAGAGTAAGACCATGTCTGGGACATGGCGTCGGCATC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
75129731 TTATCTTATG
Statistics
Matches: 107, Mismatches: 25, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
47 14 0.13
48 19 0.18
49 74 0.69
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:75129675 original size:98 final size:97
Alignment explanation
Indices: 75129547--75129727 Score: 238
Period size: 98 Copynumber: 1.9 Consensus size: 97
75129537 CTTGCTGTGT
* * * *
75129547 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCCAGTGTAAGACC-T
1 GTCAATGTAAGACCTGTCTAGGACATGGCATCGACATCGAT-G-TGAGAGCCAGAGTAAGACCAT
75129611 GTCTCAGACATGGCATCGGCCTCGATATATGAAA
64 GTCTCAGACATGGCATCGGCCTCGATATATGAAA
* * **
75129645 GTCAATGTAAGACCTGTCTAGGACATGGCATCGACTTTGATGTGCTAGCCAGAGTAAGACCATGT
1 GTCAATGTAAGACCTGTCTAGGACATGGCATCGACATCGATGTGAGAGCCAGAGTAAGACCATGT
** *
75129710 CTGGGACATGGCGTCGGC
66 CTCAGACATGGCATCGGC
75129728 ATCTTATCTT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
96 16 0.23
97 19 0.27
98 36 0.51
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (97 bp):
GTCAATGTAAGACCTGTCTAGGACATGGCATCGACATCGATGTGAGAGCCAGAGTAAGACCATGT
CTCAGACATGGCATCGGCCTCGATATATGAAA
Found at i:75131542 original size:13 final size:13
Alignment explanation
Indices: 75131524--75131559 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
75131514 GGCTGCGACA
75131524 CAATCGTGTGTCT
1 CAATCGTGTGTCT
75131537 CAATCGTGTGTCT
1 CAATCGTGTGTCT
75131550 CAATCGTGTG
1 CAATCGTGTG
75131560 AGGGACACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (13 bp):
CAATCGTGTGTCT
Found at i:75145645 original size:67 final size:65
Alignment explanation
Indices: 75145574--75145784 Score: 153
Period size: 67 Copynumber: 3.1 Consensus size: 65
75145564 TGATTCATAA
75145574 AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTA--AAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
75145639 TC
64 TC
* * * * * * * *
75145641 AAAATATAAAATATATGGTA-ATTAATATTCT-TCTGAA-AAAAATATAATTAATATATGAATTT
1 AAAATATTAATTGTAT-ATATTTTAAAATT-TAT-T-AATATAAA-A-AGTT-ATAT-T-AA-TT
*
75145703 GA-TTCA-TAC
56 AATTTCAGT-C
* *
75145712 AAAATATTAATTGTATATATTTTATTGAATTTATTAATATAAATAGTTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTA--AAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
75145777 TC
64 TC
75145779 AAAATA
1 AAAATA
75145785 ATAAAACACA
Statistics
Matches: 106, Mismatches: 20, Indels: 36
0.65 0.12 0.22
Matches are distributed among these distances:
65 5 0.05
66 9 0.08
67 32 0.30
68 7 0.07
69 8 0.08
70 7 0.07
71 25 0.24
72 9 0.08
73 4 0.04
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (65 bp):
AAAATATTAATTGTATATATTTTAAAATTTATTAATATAAAAAGTTATATTAATTAATTTCAGTC
Found at i:75145699 original size:138 final size:138
Alignment explanation
Indices: 75145543--75146103 Score: 813
Period size: 138 Copynumber: 4.1 Consensus size: 138
75145533 TATAGAACAT
*
75145543 AAAT-TAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTA
1 AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTA
* * *
75145607 TTAATATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAATATATGGTAATTAATATTCT
66 TTAATATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCT
* *
75145672 TCTGAAAA
131 TTTGGAAA
***
75145680 AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTA
1 AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTA
* *
75145745 TTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATAATAAAACACATGGAAATTAATATTC
66 TTAATATAAAAAGTTATATTAATTAATTTCAGTCAAAAT-ATAAAAGACATGGAAATTAATATTC
75145810 TTTTGGAAA
130 TTTTGGAAA
* * * * *
75145819 GAATATAATTAATATATGAATTTGAATAATACAAAATATTAATTGTATGTATTGTACCAAATTTA
1 AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTA
* *
75145884 TTAATATAAATAGTTATATTAATTAATTT-AGGTCAAAATATAAAAGACATAGAAATTAATATTC
66 TTAATATAAAAAGTTATATTAATTAATTTCA-GTCAAAATATAAAAGACATGGAAATTAATATTC
75145948 TTTTGGAAA
130 TTTTGGAAA
* * * * *
75145957 AAATATAATTAATATATGAATTTAATTTATACAAAATATTAATTATCTATATTTTATCAAATTTA
1 AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTA
* * * * * *
75146022 TTAATAT-AAAAGTTCTATTAATCAATTACGGTCAAAGTATAAAAGACATGTAAATTAATATTCT
66 TTAATATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCT
75146086 TTTGGAAA
131 TTTGGAAA
*
75146094 GAATATAATT
1 AAATATAATT
75146104 CCTTTTTCTA
Statistics
Matches: 382, Mismatches: 38, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
137 69 0.18
138 190 0.50
139 123 0.32
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (138 bp):
AAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTA
TTAATATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCT
TTTGGAAA
Found at i:75145773 original size:71 final size:71
Alignment explanation
Indices: 75145560--75145773 Score: 173
Period size: 71 Copynumber: 3.1 Consensus size: 71
75145550 TTAATATATG
** *
75145560 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAGTTATA
1 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
75145625 TTAATT
66 TTAATT
* * **
75145631 AATTTCAGTCAAAATATAAAATATATGGTAA-T-TA-ATATTCTT-CTGAA---AAAAATAT-AA
1 AATTTGATTC---ATA-AAAA-ATAT--TAATTGTATATATT-TTACTGAATTTATTAATATAAA
* *
75145688 T--TAATA-T-ATG
58 TAGTTATATTAATT
* *
75145698 AATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAATATAAATAGTTATA
1 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
75145763 TTAATT
66 TTAATT
75145769 AATTT
1 AATTT
75145774 CAGTCAAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 40
0.65 0.10 0.25
Matches are distributed among these distances:
60 3 0.03
61 1 0.01
62 8 0.08
63 12 0.11
64 3 0.03
66 6 0.06
67 13 0.12
68 1 0.01
69 8 0.08
70 1 0.01
71 17 0.16
72 6 0.06
74 3 0.03
75 12 0.11
76 8 0.08
77 1 0.01
78 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (71 bp):
AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
TTAATT
Found at i:75148727 original size:43 final size:43
Alignment explanation
Indices: 75148661--75148817 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
75148651 AGCTCATACA
*
75148661 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* *
75148704 ATGCCACTATCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * *
75148746 ATGCTGA-TGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGC-CACTGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
75148790 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCC-ACTGTCCCAGACGTGGTCTTACA
75148818 TGAGAACACA
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 29 0.31
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:75156401 original size:43 final size:42
Alignment explanation
Indices: 75156290--75156437 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
75156280 AATGGCAACA
* * * *
75156290 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCATTA
1 TCCCAGACATGGTCTTACACGTAAATCAAATA-CGATG-CAATG
** * *
75156333 TCCGTGACAGGGTCTTACACG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACACGTAAATCAAATACGATG-CAATG
*
75156375 TCCCAGACATGGTCTTATACGTAAATCATAAGT-CGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATG-CAATG
**
75156419 TCCCAGATGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
75156438 TGAGAACACA
Statistics
Matches: 83, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 24 0.29
43 31 0.37
44 27 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATACGATGCAATG
Found at i:75156420 original size:44 final size:42
Alignment explanation
Indices: 75156290--75156437 Score: 129
Period size: 44 Copynumber: 3.5 Consensus size: 42
75156280 AATGGCAACA
* * * *
75156290 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCATTA
1 TCCCAGACATGGTCTTACACGTAAATC-AA-ATCGATGCCAATG
** * * *
75156333 TCCGTGACAGGGTCTTACACG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACACGTAAATCAAAT-CGATGCCAATG
*
75156375 TCCCAGACATGGTCTTATACGTAAATCATAAGTCGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TCGATGCCAATG
**
75156419 TCCCAGATGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
75156438 TGAGAACACA
Statistics
Matches: 82, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.02
42 26 0.32
43 26 0.32
44 27 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATCGATGCCAATG
Found at i:75159774 original size:30 final size:30
Alignment explanation
Indices: 75159738--75159927 Score: 120
Period size: 30 Copynumber: 6.4 Consensus size: 30
75159728 CATTGACCAG
* *
75159738 TGAAAAGGGATAGCTTCGGCTATCGAA-TCA
1 TGAAAAGGGATAGCTCCGGCTATCAAACT-A
75159768 TGAAAAGGGATAGCTCCGGCTATCAAACTA
1 TGAAAAGGGATAGCTCCGGCTATCAAACTA
* * * * * *
75159798 TGAAAAGGGA-CGGTGACGACCATC-AACAA
1 TGAAAAGGGATAGCT-CCGGCTATCAAACTA
* * * * * *
75159827 TGAAAATGGAT-GGTGACGACCATCAAAATTA
1 TGAAAAGGGATAGCT-CCGGCTATC-AAACTA
* * ** *
75159858 TGAAATGGGATAGCTTCGGCTATTGAACCA
1 TGAAAAGGGATAGCTCCGGCTATCAAACTA
* *
75159888 TGAAAAGGGATAGCTCTGACTATCAAACTA
1 TGAAAAGGGATAGCTCCGGCTATCAAACTA
75159918 TG-AAAGGGAT
1 TGAAAAGGGAT
75159928 GGTGACAACC
Statistics
Matches: 126, Mismatches: 28, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
29 36 0.29
30 70 0.56
31 18 0.14
32 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.21
Consensus pattern (30 bp):
TGAAAAGGGATAGCTCCGGCTATCAAACTA
Found at i:75159841 original size:29 final size:29
Alignment explanation
Indices: 75159797--75159987 Score: 129
Period size: 29 Copynumber: 6.4 Consensus size: 29
75159787 CTATCAAACT
*
75159797 ATGAAAAGGGACGGTGACGACCATCAACA
1 ATGAAAAGGGATGGTGACGACCATCAACA
* *
75159826 ATGAAAATGGATGGTGACGACCATCAAAA
1 ATGAAAAGGGATGGTGACGACCATCAACA
* * * * * * *
75159855 TTATGAAATGGGATAGCT-TCGGCTATTGAACC
1 --ATGAAAAGGGAT-GGTGACGACCA-TCAACA
* * *
75159887 ATGAAAAGGGATAGCT--CTGACTATCAAACT
1 ATGAAAAGGGAT-GGTGAC-GACCATC-AACA
*
75159917 ATG-AAAGGGATGGTGACAACCATCAACA
1 ATGAAAAGGGATGGTGACGACCATCAACA
* *
75159945 ATGAAAAAGGATGGTGACGACCATCAAAA
1 ATGAAAAGGGATGGTGACGACCATCAACA
75159974 TTATGAAAAGGGAT
1 --ATGAAAAGGGAT
75159988 AGCTTCAACT
Statistics
Matches: 127, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
28 8 0.06
29 63 0.50
30 26 0.20
31 25 0.20
32 5 0.04
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCAACA
Found at i:75159978 original size:119 final size:120
Alignment explanation
Indices: 75159738--75160021 Score: 462
Period size: 119 Copynumber: 2.4 Consensus size: 120
75159728 CATTGACCAG
* *
75159738 TGAAAAGGGATAGCTTCGGCTATCGAATCATGAAAAGGGATAGCTCCGGCTATCAAACTATGAAA
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCCGACTATCAAACTATGAAA
* *
75159803 AGGGACGGTGACGACCATCAACAATGAAAATGGATGGTGACGACCATCAAAATTA
66 AGGGACGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
* * *
75159858 TGAAATGGGATAGCTTCGGCTATTGAACCATGAAAAGGGATAGCTCTGACTATCAAACTATG-AA
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCCGACTATCAAACTATGAAA
*
75159922 AGGGATGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
66 AGGGACGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
** *
75159977 TGAAAAGGGATAGCTTCAACTATTGAATCATGAAAATGGATAGCT
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCT
75160022 TTGTGTAACA
Statistics
Matches: 151, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
119 94 0.62
120 57 0.38
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (120 bp):
TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCCGACTATCAAACTATGAAA
AGGGACGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
Found at i:75161505 original size:29 final size:29
Alignment explanation
Indices: 75161473--75161608 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
75161463 ATACCCTTCG
** * *
75161473 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
75161502 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75161531 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
75161560 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75161589 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
75161609 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:75161600 original size:58 final size:58
Alignment explanation
Indices: 75161448--75161607 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
75161438 AATTTAAGCC
* *** * * ** * *
75161448 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
75161506 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
75161564 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
75161608 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:75162442 original size:143 final size:141
Alignment explanation
Indices: 75162252--75162546 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
75162242 AAATTCTATA
75162252 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
75162317 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
75162382 GAAGACAACAT
131 GAAAACAACAT
75162393 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
75162458 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
75162523 AGGAAAACAACAT
129 AGGAAAACAACAT
75162536 GCATGGCCGAA
1 GCATGGCCGAA
75162547 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:75169466 original size:29 final size:29
Alignment explanation
Indices: 75169434--75169569 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
75169424 ATACCCTTCG
** * *
75169434 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
75169463 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75169492 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
75169521 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75169550 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
75169570 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:75169561 original size:58 final size:58
Alignment explanation
Indices: 75169409--75169568 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
75169399 AATTTAAGCC
* *** * * ** * *
75169409 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
75169467 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
75169525 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
75169569 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:75170403 original size:143 final size:141
Alignment explanation
Indices: 75170213--75170507 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
75170203 AAATTCTATA
75170213 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
75170278 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
75170343 GAAGACAACAT
131 GAAAACAACAT
75170354 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
75170419 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
75170484 AGGAAAACAACAT
129 AGGAAAACAACAT
75170497 GCATGGCCGAA
1 GCATGGCCGAA
75170508 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:75174379 original size:49 final size:49
Alignment explanation
Indices: 75174318--75174626 Score: 568
Period size: 49 Copynumber: 6.3 Consensus size: 49
75174308 TTGTATGAGA
75174318 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75174367 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
75174416 TGTATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75174465 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75174514 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75174563 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75174612 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
75174627 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
47 10 0.04
48 1 0.00
49 245 0.96
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:75184151 original size:67 final size:67
Alignment explanation
Indices: 75184077--75184291 Score: 192
Period size: 67 Copynumber: 3.1 Consensus size: 67
75184067 TTTGATTCAT
75184077 ACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTC
1 ACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTC
75184142 TA
66 TA
* * *** ** *
75184144 ACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAA---A-TAATATAATTAA-TATATGA
1 ACAAAATAT--TA-A--TTGT-A-T-ATATT-TTACCGAATTTATTAATATAAACAATTATATTA
*
75184204 ATTTGA-TTC-A
57 A-TTAATTTCTA
75184214 TACAAAATATTAATTGTATATATTTTTACCGAATTTATTAATATAAACAATTATATTAATTAATT
1 -ACAAAATATTAATTGTATATA-TTTTACCGAATTTATTAATATAAACAATTATATTAATTAATT
75184279 TCTA
64 TCTA
75184283 ACAAAATAT
1 ACAAAATAT
75184292 AAAAGACGTG
Statistics
Matches: 111, Mismatches: 18, Indels: 37
0.67 0.11 0.22
Matches are distributed among these distances:
63 8 0.07
64 3 0.03
65 1 0.01
66 4 0.04
67 22 0.20
68 20 0.18
69 3 0.03
70 2 0.02
71 19 0.17
72 16 0.14
73 2 0.02
74 1 0.01
75 5 0.05
76 5 0.05
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.42
Consensus pattern (67 bp):
ACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTC
TA
Found at i:75184220 original size:71 final size:71
Alignment explanation
Indices: 75184144--75184362 Score: 217
Period size: 71 Copynumber: 3.1 Consensus size: 71
75184134 TTAATTTCTA
75184144 ACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTG
1 ACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTG
75184209 ATTCAT
66 ATTCAT
* * ** ** *
75184215 ACAAAATAT--TA-A--TTGT-A-T-ATATT-TTTACCGAATTTATTAATATAAACAATTATATT
1 ACAAAATATAAAAGACGTGGTAATTAATATTCTTT-TGGAA---A-TAATATAATTAA-TATATG
*
75184271 AA-TTAATTTC-T
60 AATTTGA-TTCAT
75184282 AACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTT
1 -ACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTT
75184347 GATTCAT
65 GATTCAT
75184354 ACAAAATAT
1 ACAAAATAT
75184363 TGATTGTATA
Statistics
Matches: 113, Mismatches: 16, Indels: 38
0.68 0.10 0.23
Matches are distributed among these distances:
62 3 0.03
63 8 0.07
64 1 0.01
65 1 0.01
66 4 0.04
67 14 0.12
68 20 0.18
69 1 0.01
70 1 0.01
71 29 0.26
72 14 0.12
73 4 0.04
74 1 0.01
75 1 0.01
76 8 0.07
77 3 0.03
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (71 bp):
ACAAAATATAAAAGACGTGGTAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTG
ATTCAT
Found at i:75184303 original size:139 final size:138
Alignment explanation
Indices: 75184050--75184555 Score: 784
Period size: 139 Copynumber: 3.7 Consensus size: 138
75184040 GAGAACATAG
75184050 ATAT-ATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
75184114 AATATAAACAATTATATTAATTAATTTCTAACAAAATATAAAAGACGTGGTAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCTAACAAAATATAAAAGACGTGGTAATTAATATTCTTT
75184179 TGGAAATA
131 TGGAAATA
75184187 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACCGAATTTAT
75184252 TAATATAAACAATTATATTAATTAATTTCTAACAAAATATAAAAGACGTGGTAATTAATATTCTT
65 TAATATAAACAATTATATTAATTAATTTCTAACAAAATATAAAAGACGTGGTAATTAATATTCTT
75184317 TTGGAAATA
130 TTGGAAATA
*
75184326 ATATAATTAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACCGAATTTAT
* * ** * * **
75184391 TAATATAAATATTTATATTAATTAATTT-TGGTCAAAATATAAAAAACATGAAAATTAATATT-T
65 TAATATAAACAATTATATTAATTAATTTCT-AACAAAATATAAAAGACGTGGTAATTAATATTCT
* *
75184454 TTTTGAAAGA
129 TTTGGAAATA
* * * * * *
75184464 ATATAATTAATATATGAATTTTACTCATACAAAATATTACTTGTATGTACTGTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
75184529 AATATAAATAGTTATATTAATAAATTT
66 AATATAAACAATTATATTAATTAATTT
75184556 TGGTCAAAAG
Statistics
Matches: 346, Mismatches: 20, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
137 43 0.12
138 98 0.28
139 205 0.59
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.42
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAATTATATTAATTAATTTCTAACAAAATATAAAAGACGTGGTAATTAATATTCTTT
TGGAAATA
Found at i:75201506 original size:29 final size:29
Alignment explanation
Indices: 75201474--75201608 Score: 164
Period size: 29 Copynumber: 4.7 Consensus size: 29
75201464 ATACCCTCCG
** * *
75201474 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
75201503 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75201532 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
75201561 AGCTCGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
75201590 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
75201609 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
28 1 0.01
29 91 0.98
30 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:75201541 original size:58 final size:58
Alignment explanation
Indices: 75201420--75201609 Score: 188
Period size: 58 Copynumber: 3.3 Consensus size: 58
75201410 TACTCGATTT
* * * *** *
75201420 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCTCGCACACATAGTGCCATATATTTCC-AGCA
** * * * *
75201478 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCTCGCACACATAGTGCCATATATTTCCAGCA
* * *
75201536 TGCACACTTAGTGCCTTATATTTCCAGCTCGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCTCGCACACATAGTGCCATATATTTCCAGCA
75201594 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
75201610 ATCTCGTCAC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 95 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCTCGCACACATAGTGCCATATATTTCCAGCA
Found at i:75204910 original size:27 final size:27
Alignment explanation
Indices: 75204873--75204948 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
75204863 TTAGTTTACC
*
75204873 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTCGATTTGTAA
* * * *
75204900 ATTTACCGAAATACCTTCAACTTGTAA
1 AATTACCGAAATACCCTCGATTTGTAA
75204927 AATTACC-AAAGTACCC-CGATTT
1 AATTACCGAAA-TACCCTCGATTT
75204949 ACAGAATTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
26 7 0.18
27 32 0.82
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCGAAATACCCTCGATTTGTAA
Found at i:75204983 original size:27 final size:27
Alignment explanation
Indices: 75204945--75205038 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 27
75204935 AAGTACCCCG
* *
75204945 ATTTACAGAATTATTGTTTTACCCCTA
1 ATTTACATAATTATCGTTTTACCCCTA
* *
75204972 ATTTACATAATTACCGTTTTACCCCTG
1 ATTTACATAATTATCGTTTTACCCCTA
75204999 ATTTACATAATTATCGTTTTA-CCCTCA
1 ATTTACATAATTATCGTTTTACCCCT-A
*
75205026 ATTTACAAAATTA
1 ATTTACATAATTA
75205039 CCAAAATACC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.07
27 55 0.93
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (27 bp):
ATTTACATAATTATCGTTTTACCCCTA
Found at i:75205011 original size:54 final size:53
Alignment explanation
Indices: 75204938--75205040 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
75204928 ATTACCAAAG
* *
75204938 TACCCCGATTTACAGAATTATTGTTTTACCC-CTAATTTACATAATTACCGTTT
1 TACCCCGATTTACAGAATTATCGTTTTACCCTC-AATTTACAAAATTACCGTTT
*
75204991 TACCCCTGATTTACATAATTATCGTTTTACCCTCAATTTACAAAATTACC
1 TACCCC-GATTTACAGAATTATCGTTTTACCCTCAATTTACAAAATTACC
75205041 AAAATACCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 6 0.13
54 38 0.84
55 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (53 bp):
TACCCCGATTTACAGAATTATCGTTTTACCCTCAATTTACAAAATTACCGTTT
Found at i:75205048 original size:27 final size:27
Alignment explanation
Indices: 75205018--75205156 Score: 140
Period size: 27 Copynumber: 5.1 Consensus size: 27
75205008 ATTATCGTTT
** *
75205018 TACCCTCAATTTACAAAATTACCAAAA
1 TACCCTCGGTTTATAAAATTACCAAAA
* *
75205045 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCGGTTTATAAAATTACCAAAA
* *
75205072 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GGTTTATAAAATTACCAAAA
**
75205099 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCGGTTTATAAAATTACCAAAA
*
75205126 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCGGTTT-ATAAAATTACCAAAA
75205153 TACC
1 TACC
75205157 TCTGTAGGGT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
27 91 0.98
28 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCGGTTTATAAAATTACCAAAA
Found at i:75205049 original size:54 final size:53
Alignment explanation
Indices: 75204925--75205049 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 53
75204915 TTCAACTTGT
* *
75204925 AAAATTACCAAAGTACCCCGATTTACAGAATTATTGTTTTACCCCTAATTTAC
1 AAAATTACCAAAATACCCCGATTTACAGAATTATCGTTTTACCCCTAATTTAC
* **** *
75204978 ATAATTACCGTTTTACCCCTGATTTACATAATTATCGTTTTA-CCCTCAATTTAC
1 AAAATTACCAAAATACCCC-GATTTACAGAATTATCGTTTTACCCCT-AATTTAC
75205032 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
75205050 TTGGTTTATA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
53 18 0.31
54 40 0.69
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCGATTTACAGAATTATCGTTTTACCCCTAATTTAC
Found at i:75205170 original size:27 final size:27
Alignment explanation
Indices: 75205084--75205201 Score: 98
Period size: 27 Copynumber: 4.4 Consensus size: 27
75205074 CCCCTGGTTT
**
75205084 GTAAAATTACTAAAATACCCTTTGT-TT
1 GTAAAATTACTAAAATACCC-TTGTAGG
* * * **
75205111 ATAAAATTACCAAAATACCCATGGT-TT
1 GTAAAATTACTAAAATACCC-TTGTAGG
*
75205138 GAAAAATTACTAAAATA-CCTCTGTAGG
1 GTAAAATTACTAAAATACCCT-TGTAGG
* *
75205165 GTAAAATTACTGAAATACCCTTGTGGG
1 GTAAAATTACTAAAATACCCTTGTAGG
75205192 GTAAAATTAC
1 GTAAAATTAC
75205202 CATTTTGCCC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 4 0.05
27 67 0.89
28 3 0.04
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCTTGTAGG
Found at i:75205170 original size:54 final size:54
Alignment explanation
Indices: 75205032--75205184 Score: 166
Period size: 54 Copynumber: 2.8 Consensus size: 54
75205022 CTCAATTTAC
* ** * * *
75205032 AAAATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGA
* **
75205086 AAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
* **
75205140 AAAATTACTAAAATA-CCTCTGTAGGGTAAAATTACTGAAATACCC
1 AAAATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
75205185 TTGTGGGGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 6 0.07
54 80 0.92
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGA
Found at i:75205186 original size:81 final size:81
Alignment explanation
Indices: 75205027--75205186 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 81
75205017 TTACCCTCAA
* **
75205027 TTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATT
75205092 ACTAAAATACCCTTTG
66 ACTAAAATACCCTTTG
* * * *
75205108 TTTATAAAATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCTCT-GTAGGGTAAAA
1 TTTACAAAATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAA
*
75205171 TTACTGAAATACCCTT
64 TTACTAAAATACCCTT
75205187 GTGGGGTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 66 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATT
ACTAAAATACCCTTTG
Found at i:75205855 original size:28 final size:28
Alignment explanation
Indices: 75205822--75205906 Score: 143
Period size: 28 Copynumber: 3.0 Consensus size: 28
75205812 GCGTAGATCA
75205822 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
75205850 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
75205878 CGAAATTACCCCTAAATAGAAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
75205906 C
1 C
75205907 AATATACCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:75217706 original size:28 final size:28
Alignment explanation
Indices: 75217674--75217772 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75217664 GCAATAAGCC
*
75217674 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75217702 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75217730 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75217759 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75217773 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75222674 original size:29 final size:29
Alignment explanation
Indices: 75222641--75222772 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
75222631 GTGACGAGAT
*
75222641 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
75222670 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
75222699 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
75222728 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
75222757 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75222773 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:75230551 original size:29 final size:29
Alignment explanation
Indices: 75230518--75230649 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
75230508 GTGACGAGAT
*
75230518 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
75230547 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
75230576 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
75230605 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
75230634 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75230650 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:75236324 original size:28 final size:28
Alignment explanation
Indices: 75236292--75236390 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75236282 GCAATAAGCC
*
75236292 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75236320 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75236348 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75236377 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75236391 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75240246 original size:25 final size:25
Alignment explanation
Indices: 75240203--75240273 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
75240193 TATGCTCATA
*
75240203 CGAGCTATA-AATGGTAAGCTCCTC
1 CGAGCTAAATAATGGTAAGCTCCTC
75240227 CGAGCTAAATAATGGTAAGCTCCTC
1 CGAGCTAAATAATGGTAAGCTCCTC
75240252 CGAGCTAAATAATGGTAAGCTC
1 CGAGCTAAATAATGGTAAGCTC
75240274 ATACAAGCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 8 0.18
25 37 0.82
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (25 bp):
CGAGCTAAATAATGGTAAGCTCCTC
Found at i:75240282 original size:25 final size:25
Alignment explanation
Indices: 75240196--75240312 Score: 121
Period size: 25 Copynumber: 4.7 Consensus size: 25
75240186 GTACATGTAT
*
75240196 GCTCATACGAGCTATA-AATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* *
75240220 GCTCCTCCGAGCTAAATAATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* *
75240245 GCTCCTCCGAGCTAAATAATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* *
75240270 GCTCATACAAGCTAAGT-ATCGGTAA
1 GCTCATACGAGCTAAATAAT-GGTAA
* *
75240295 GCTTATAAGAGCTGAAAT
1 GCTCATACGAGCT-AAAT
75240313 CAGTAACCTT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
24 15 0.19
25 61 0.77
26 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTAAATAATGGTAA
Found at i:75247993 original size:28 final size:28
Alignment explanation
Indices: 75247924--75248024 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75247914 GACAAGATTG
* * * *
75247924 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75247954 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75247982 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75248011 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75248025 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75248018 original size:29 final size:28
Alignment explanation
Indices: 75247953--75248024 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
75247943 AAAATTGTAC
*
75247953 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
75247981 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
75248010 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75248025 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:75258763 original size:28 final size:28
Alignment explanation
Indices: 75258694--75258794 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75258684 GACAAGATTG
* * * *
75258694 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75258724 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75258752 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75258781 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75258795 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75258788 original size:29 final size:28
Alignment explanation
Indices: 75258723--75258794 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
75258713 AAAATTGTAC
*
75258723 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
75258751 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
75258780 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75258795 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:75266578 original size:42 final size:42
Alignment explanation
Indices: 75266518--75266603 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
75266508 TTAAAAACTA
*
75266518 TAAATTTAAATCCGTAAAATTTTCCTGAAACTAGACTCATAT
1 TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
75266560 TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
1 TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
75266602 TA
1 TA
75266604 CTTCTTACTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (42 bp):
TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
Found at i:75273616 original size:38 final size:38
Alignment explanation
Indices: 75273573--75273703 Score: 127
Period size: 38 Copynumber: 3.2 Consensus size: 38
75273563 TTTCAAATTA
*
75273573 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
75273611 ACATGTTTAACCGTGGTATATCCATTTAGCACCACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC-GT--T
*
75273652 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
75273696 ACATGTAT
1 ACATGTAT
75273704 CAATATGTGT
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
38 32 0.44
39 1 0.01
40 4 0.05
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 26 0.36
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:75273672 original size:47 final size:48
Alignment explanation
Indices: 75273618--75273722 Score: 149
Period size: 47 Copynumber: 2.2 Consensus size: 48
75273608 GTTACATGTT
*
75273618 TAACCGTGGTATATCCATTTAGCACCACATTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* * * *
75273665 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
*
75273713 TAATCGTGGT
1 TAACCGTGGT
75273723 TGTAACACCC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 29 0.58
48 21 0.42
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
Found at i:75282296 original size:48 final size:48
Alignment explanation
Indices: 75282203--75282326 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
75282193 TAACCGTACT
*
75282203 ATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGC
1 ATATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGC
* * * * *
75282250 ATATCCAATTAGCACCATGTTACATGTATCAATATGTGTAATCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGC
*
75282298 ATATCCACTTAGCACCACGTTACACGTAT
1 ATATCCACTTAGCACCACGTTACATGTAT
75282327 AACCGTGGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 20 0.30
48 47 0.70
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
ATATCCACTTAGCACCACGTTACATGTATCAATATATGTAACCGTGGC
Found at i:75287011 original size:21 final size:21
Alignment explanation
Indices: 75286985--75287029 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
75286975 AAATGAATGT
*
75286985 TAACATTTTGATTTTGTCCGG
1 TAACATTTTGATTTTGTCAGG
75287006 TAACATTTTGATTTTGTCAGG
1 TAACATTTTGATTTTGTCAGG
75287027 TAA
1 TAA
75287030 TGCCTTTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (21 bp):
TAACATTTTGATTTTGTCAGG
Found at i:75288382 original size:48 final size:48
Alignment explanation
Indices: 75288295--75288518 Score: 242
Period size: 48 Copynumber: 4.7 Consensus size: 48
75288285 GGCACCGATG
* * * * *
75288295 CCATGTCCCAGACATGGTCTTACACTAGCTC-TCATAACAATGCCAAGA
1 CCATGTTCCAAACATGGTCTTACACTGGCTCAT-ACAACAATGCCATGA
*
75288343 CCATTTTCCAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGA
1 CCATGTTCCAAACATGGTCTTACACTGGCTCATACAACAATGCC-ATGA
* *
75288392 -CATGTTCCAAACATGGTCTTACACTGTCTCATACAACAATGTCGATG-
1 CCATGTTCCAAACATGGTCTTACACTGGCTCATACAACAATG-CCATGA
* * *
75288439 CCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAA-GTCGATG-
1 CCATGTTCCAAACATGGTCTTACACTGGCTCATACAAC-AATG-CCATGA
* * *
75288487 CCATGTCCCAGACATGGTCTTACACTGTCTCA
1 CCATGTTCCAAACATGGTCTTACACTGGCTCA
75288519 CATATAACCT
Statistics
Matches: 156, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
48 149 0.96
49 7 0.04
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (48 bp):
CCATGTTCCAAACATGGTCTTACACTGGCTCATACAACAATGCCATGA
Found at i:75288407 original size:96 final size:95
Alignment explanation
Indices: 75288289--75288518 Score: 313
Period size: 96 Copynumber: 2.4 Consensus size: 95
75288279 TATATTGGCA
*
75288289 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-AACAATG-CCAAGACCATTTTCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-TCTCATAAACAATGTCCAAG-CCATGTTCC
75288352 AAACATGGTCTTACACTGGCTCATACAAC-AATG
63 AAACATGGTCTTACACTGGCTCATACAACGAA-G
* * * * *
75288385 CCGATGACATGTTCCAAACATGGTCTTACACTGTCTCATACAACAATGTCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCATA-AACAATGTCCAAGCCATGTTCCAA
* *
75288450 ACATGGTCTTACACTGGCTCATATATCGAAG
65 ACATGGTCTTACACTGGCTCATACAACGAAG
*
75288481 TCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCA
75288519 CATATAACCT
Statistics
Matches: 118, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
94 6 0.05
95 1 0.01
96 106 0.90
97 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCATAAACAATGTCCAAGCCATGTTCCAAA
CATGGTCTTACACTGGCTCATACAACGAAG
Found at i:75293366 original size:30 final size:29
Alignment explanation
Indices: 75293330--75293397 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 29
75293320 ATGTCCTGCG
*
75293330 GCCGTGTCCTTCACACGGCCAAGACACAC
1 GCCGTGTCCTTCACACAGCCAAGACACAC
*
75293359 AGCCGTGTCCTTCACACAGCCGAGACACAC
1 -GCCGTGTCCTTCACACAGCCAAGACACAC
75293389 GACCGTGTC
1 G-CCGTGTC
75293398 TCTGCCCGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 1 0.03
30 34 0.97
ACGTcount: A:0.24, C:0.40, G:0.22, T:0.15
Consensus pattern (29 bp):
GCCGTGTCCTTCACACAGCCAAGACACAC
Found at i:75294606 original size:48 final size:48
Alignment explanation
Indices: 75294521--75294666 Score: 170
Period size: 48 Copynumber: 3.1 Consensus size: 48
75294511 AACATAGTAG
* * * *
75294521 GATGCCAATACCATATCCCGAATATGG-CTTACATGGGATCACATATC
1 GATGCCAATTCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* ** *
75294568 GATGCCAATTCCATGTCCCAAACATGGTCTTACGTGGGATCGTAGATC
1 GATGCCAATTCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
* * *
75294616 GATGCCAATGT-CATGTCCCAGACATGGTTTTACATGGGATCTCATATC
1 GATGCCAAT-TCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
75294664 GAT
1 GAT
75294667 ACCGATAGCC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 23 0.28
48 59 0.71
49 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATTCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
Found at i:75297938 original size:79 final size:80
Alignment explanation
Indices: 75297807--75298000 Score: 338
Period size: 79 Copynumber: 2.5 Consensus size: 80
75297797 ATTCGGATTG
*
75297807 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
75297871 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
*
75297886 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
75297950 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
*
75297965 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75298001 AGCTATATCG
Statistics
Matches: 108, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
78 3 0.03
79 82 0.76
80 23 0.21
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:75298007 original size:40 final size:40
Alignment explanation
Indices: 75297807--75298000 Score: 338
Period size: 40 Copynumber: 4.9 Consensus size: 40
75297797 ATTCGGATTG
75297807 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75297846 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75297886 ATAACCGGGC-AAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75297925 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75297965 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75298001 AGCTATATCG
Statistics
Matches: 148, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 51 0.34
40 97 0.66
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75305871 original size:40 final size:40
Alignment explanation
Indices: 75305812--75306031 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
75305802 ATTCGGATTG
*
75305812 ATAACCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75305851 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
75305891 ATAACTGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
75305931 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
75305971 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
75306011 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
75306032 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
38 8 0.05
39 20 0.12
40 139 0.83
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75309046 original size:17 final size:18
Alignment explanation
Indices: 75309026--75309059 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75309016 TGGTTTAAGT
75309026 TAAA-ATTATTTGTTGCA
1 TAAACATTATTTGTTGCA
*
75309043 TAAACTTTATTTGTTGC
1 TAAACATTATTTGTTGC
75309060 GTTTCACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (18 bp):
TAAACATTATTTGTTGCA
Found at i:75310076 original size:431 final size:433
Alignment explanation
Indices: 75309229--75310099 Score: 1656
Period size: 431 Copynumber: 2.0 Consensus size: 433
75309219 AACCGAATTA
* *
75309229 ATTTGTAGACTCAAAATAGCGCATCTTGTTTTTTCTGTCCTTTTTACAAATAAAAGTAATTGTTG
1 ATTTGTAGACTCAAAATAGCGCATCTTGTTTTTTCTGTCCTTTTTACAAATAAAAATAATTATTG
*
75309294 TGAGATTAAACGTCCCATGATTAACTCATTATAAGCAATTTTGTTTGTCTCGTATCTATAATTTA
66 TGAGATTAAACGTCCCATGATTAACTCATTATAAGCAATTTTGTTTGCCTCGTATCTATAATTTA
75309359 CTCGTGTATAAAACAACTCCCCACTCTTATTTTAAGATCACCAGTTGTTTCTTTCACTAAAAATA
131 CTCGTGTATAAAACAACTCCCCACTCTTATTTTAAGATCACCAGTTGTTTC-TTCACTAAAAATA
75309424 ATTTTTGAAAAATGATTTGCTTTCAATTTAATATTAATTTAATATTTTTTTAGTATTTAGACAAA
195 ATTTTTGAAAAATGATTTGCTTTCAATTTAATATTAATTTAATATTTTTTTAGTATTTAGACAAA
75309489 TTTGTATAAAATATTTTTTGTTGTTTAATAATTTTTTTAAAAATATTTCATAAAAATTGTTTTCA
260 TTTGTATAAAATATTTTTTGTTGTTTAATAATTTTTTTAAAAATATTTCATAAAAATTGTTTTCA
* *
75309554 ATAAAATAAACATATGTTTGATATTTTGTTATCATTTCATTATTTAGTTAAATTTATTTTATTTA
325 ATAAAATAAACATACGTTTGATATTTTGTTATCATTTCATTATTTAGTTAAATTTATTCTATTTA
75309619 TATATGAATTTATATTTCACATTGTTTTTACATATATTAAAAAT
390 TATATGAATTTATATTTCACATTGTTTTTACATATATTAAAAAT
75309663 ATTTGTAGACTCAAAATAGCGCATCTTGTTTTTTCTGTCCTTTTTACAAATAAAAATAATTATTG
1 ATTTGTAGACTCAAAATAGCGCATCTTGTTTTTTCTGTCCTTTTTACAAATAAAAATAATTATTG
75309728 TGAGATTAAACGTCCCATGATTAACTCATTATAAGCAATTTTGTTTGCCTCGTATCTATAATTTA
66 TGAGATTAAACGTCCCATGATTAACTCATTATAAGCAATTTTGTTTGCCTCGTATCTATAATTTA
75309793 CTCGTGTATAAAACAACTCCCCACTCTTATTTTAAGATCACCAGTTGTTTC-TCACTAAAAATAA
131 CTCGTGTATAAAACAACTCCCCACTCTTATTTTAAGATCACCAGTTGTTTCTTCACTAAAAATAA
75309857 TTTTTGAAAAATGATTTGCTTTCAATTTAATATTAATTTAATA-TTTTTTAGTATTTAGACAAAT
196 TTTTTGAAAAATGATTTGCTTTCAATTTAATATTAATTTAATATTTTTTTAGTATTTAGACAAAT
*
75309921 TTGTATAAAATATTTTTTGTTGTTTAATAATTTTTTTAAAAATATTTCATAAAAATTGTTTTTAA
261 TTGTATAAAATATTTTTTGTTGTTTAATAATTTTTTTAAAAATATTTCATAAAAATTGTTTTCAA
75309986 TAAAATAAACATACGTTTGATATTTTGTTATCATTTCATTATTTAGTTAAATTTATTCTATTTAT
326 TAAAATAAACATACGTTTGATATTTTGTTATCATTTCATTATTTAGTTAAATTTATTCTATTTAT
*
75310051 ATATGAATTTATATTTCACATTGTTTTTGCATATATTAAAAAT
391 ATATGAATTTATATTTCACATTGTTTTTACATATATTAAAAAT
75310094 ATTTGT
1 ATTTGT
75310100 TACATTCTGG
Statistics
Matches: 430, Mismatches: 7, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
431 196 0.46
432 56 0.13
434 178 0.41
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (433 bp):
ATTTGTAGACTCAAAATAGCGCATCTTGTTTTTTCTGTCCTTTTTACAAATAAAAATAATTATTG
TGAGATTAAACGTCCCATGATTAACTCATTATAAGCAATTTTGTTTGCCTCGTATCTATAATTTA
CTCGTGTATAAAACAACTCCCCACTCTTATTTTAAGATCACCAGTTGTTTCTTCACTAAAAATAA
TTTTTGAAAAATGATTTGCTTTCAATTTAATATTAATTTAATATTTTTTTAGTATTTAGACAAAT
TTGTATAAAATATTTTTTGTTGTTTAATAATTTTTTTAAAAATATTTCATAAAAATTGTTTTCAA
TAAAATAAACATACGTTTGATATTTTGTTATCATTTCATTATTTAGTTAAATTTATTCTATTTAT
ATATGAATTTATATTTCACATTGTTTTTACATATATTAAAAAT
Done.