Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 255 of 345
Found at i:75310361 original size:17 final size:17
Alignment explanation
Indices: 75310339--75310399 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
75310329 ACTACAAAAC
75310339 ATTTATATTATTAATAT
1 ATTTATATTATTAATAT
* *
75310356 ATTTATAATT-GTAATAA
1 ATTTAT-ATTATTAATAT
*
75310373 ATATT-TATTATTAAAAT
1 AT-TTATATTATTAATAT
*
75310390 ATTAATATTA
1 ATTTATATTA
75310400 AATATTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
16 4 0.12
17 25 0.74
18 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTATATTATTAATAT
Found at i:75314427 original size:27 final size:27
Alignment explanation
Indices: 75314393--75314460 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
75314383 ATTGTTCTCT
* **
75314393 TCAGATTTCTTGTCATTCTCATTTGAA
1 TCAGATTTCTTGTCAGTCTCATCCGAA
75314420 TCAGATTTCTTGTCAGTCTCATCCGAA
1 TCAGATTTCTTGTCAGTCTCATCCGAA
75314447 TCAGATTTCTTGTC
1 TCAGATTTCTTGTC
75314461 GTCAGAATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (27 bp):
TCAGATTTCTTGTCAGTCTCATCCGAA
Found at i:75317731 original size:2 final size:2
Alignment explanation
Indices: 75317719--75317748 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
75317709 CCATGTATTT
*
75317719 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75317749 CACATACGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:75318069 original size:25 final size:25
Alignment explanation
Indices: 75318041--75318088 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
75318031 AATAACGGGT
75318041 AGCTCCGAAGAGCCATAAATCAGGA
1 AGCTCCGAAGAGCCATAAATCAGGA
* * * *
75318066 AGCTCTGGATAGCCATATATCAG
1 AGCTCCGAAGAGCCATAAATCAG
75318089 AAAGTTTAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (25 bp):
AGCTCCGAAGAGCCATAAATCAGGA
Found at i:75320218 original size:30 final size:30
Alignment explanation
Indices: 75320184--75320252 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
75320174 ACATACCTGA
75320184 ATCACTTAATGTGTAATACGAGTTCAATTT
1 ATCACTTAATGTGTAATACGAGTTCAATTT
*
75320214 ATCACTTAATGTGTAATACGCGTTCAATTT
1 ATCACTTAATGTGTAATACGAGTTCAATTT
75320244 ATCATCTTA
1 ATCA-CTTA
75320253 GCATAGGATC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 33 0.89
31 4 0.11
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (30 bp):
ATCACTTAATGTGTAATACGAGTTCAATTT
Found at i:75327490 original size:43 final size:43
Alignment explanation
Indices: 75327409--75327491 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
75327399 GATTAACGAG
* * *
75327409 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCAAGTCTGGGACATCGGCATCATT
**
75327452 ATGTGATTACGTGTAAGACCACAGT-TGGGTTATCGGCATC
1 ATGTGATTACGTGTAAGACCA-AGTCTGGGACATCGGCATC
75327492 CATATGATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCAAGTCTGGGACATCGGCATCATT
Found at i:75330087 original size:40 final size:40
Alignment explanation
Indices: 75329992--75330175 Score: 320
Period size: 39 Copynumber: 4.7 Consensus size: 40
75329982 TAGTAATTCG
* *
75329992 CAAATGCCTTC-GGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
*
75330031 C-AATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
75330070 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
75330110 CAAATGCCTTC-GGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
75330149 CAAATGCCTTCGGGAATTAACCCGGAT
1 CAAATGCCTTCGGGAATTAACCCGGAT
75330176 ATCATTCGAA
Statistics
Matches: 140, Mismatches: 2, Indels: 5
0.95 0.01 0.03
Matches are distributed among these distances:
38 9 0.06
39 68 0.49
40 63 0.45
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
Found at i:75330104 original size:79 final size:79
Alignment explanation
Indices: 75329992--75330175 Score: 318
Period size: 79 Copynumber: 2.3 Consensus size: 79
75329982 TAGTAATTCG
* *
75329992 CAAATGCCTTC-GGACTTAACCCGGATTTGGTAACTCGCAC-AATGCCTTCGGGAATTAACCCGG
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGAATTAACCCGG
*
75330055 ATTTGGTAACTCGCA
65 ATTTAGTAACTCGCA
75330070 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGAATTAACCCGGA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGAATTAACCCGGA
75330135 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
75330149 CAAATGCCTTCGGGAATTAACCCGGAT
1 CAAATGCCTTCGGGAATTAACCCGGAT
75330176 ATCATTCGAA
Statistics
Matches: 101, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
78 11 0.11
79 81 0.80
80 9 0.09
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGAATTAACCCGGA
TTTAGTAACTCGCA
Found at i:75338049 original size:39 final size:40
Alignment explanation
Indices: 75337992--75338180 Score: 180
Period size: 39 Copynumber: 4.8 Consensus size: 40
75337982 GGATATAGCT
* * * *
75337992 ACTCGCTCGATTGTCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAATTGCCTTCGGGACATAACCCGGATT-TAGTA
* * *
75338032 ATTCGGCA-AA-TGCCTTCGGGACTTAACCCGGATTTGGTA
1 ACTC-GCACAATTGCCTTCGGGACATAACCCGGATTTAGTA
*
75338071 ACTCGCACAATTGCCTTCGGGA-ATTAA-CCGGATTTGGTA
1 ACTCGCACAATTGCCTTCGGGACA-TAACCCGGATTTAGTA
* *
75338110 ACTCGCACAAATGCCTTCGGGA-TTAACCCGGATTTA-TA
1 ACTCGCACAATTGCCTTCGGGACATAACCCGGATTTAGTA
*
75338148 ACTCGCACAAATGCCTT-GGGA-ATTAACCCGGAT
1 ACTCGCACAATTGCCTTCGGGACA-TAACCCGGAT
75338181 ATCATTCGAA
Statistics
Matches: 129, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
37 4 0.03
38 35 0.27
39 68 0.53
40 20 0.16
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATAACCCGGATTTAGTA
Found at i:75338150 original size:38 final size:40
Alignment explanation
Indices: 75338038--75338180 Score: 231
Period size: 39 Copynumber: 3.7 Consensus size: 40
75338028 AGTAATTCGG
*
75338038 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
*
75338078 CAATTGCCTTCGGGAATTAA-CCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
*
75338117 CAAATGCCTTCGGG-ATTAACCCGGATTT-ATAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
75338155 CAAATGCCTT-GGGAATTAACCCGGAT
1 CAAATGCCTTCGGGAATTAACCCGGAT
75338181 ATCATTCGAA
Statistics
Matches: 97, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
37 3 0.03
38 36 0.37
39 40 0.41
40 18 0.19
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
Found at i:75341093 original size:79 final size:81
Alignment explanation
Indices: 75340964--75341155 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
75340954 CGATATAACG
* ** *
75340964 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTC-GGATC
* *
75341027 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
75341044 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAACGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
** *
75341107 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
75341123 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
75341156 CATCATTCAA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.55
80 41 0.42
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:75341155 original size:40 final size:39
Alignment explanation
Indices: 75340964--75341155 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 39
75340954 CGATATAACG
* ** *
75340964 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75341004 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
75341044 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75341083 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
75341123 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75341156 CATCATTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75349060 original size:79 final size:80
Alignment explanation
Indices: 75348951--75349142 Score: 221
Period size: 79 Copynumber: 2.4 Consensus size: 80
75348941 AGATATAACG
* ** *
75348951 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATC
* *
75349014 TTAACCCGGGTTTAGTA
64 TTAACCCGGATATAGTA
* *
75349031 ACTCGCACAAATGCCTTC-GGCCTTAGCCCGGATTTATTAACTCGCACGAACGCCTTCGGATCTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTT
** *
75349095 AGTCCGGATATAGTC
66 AACCCGGATATAGTA
*
75349110 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
75349143 CATCATTCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.55
80 40 0.42
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTT
AACCCGGATATAGTA
Found at i:75349142 original size:40 final size:39
Alignment explanation
Indices: 75348951--75349142 Score: 181
Period size: 40 Copynumber: 4.8 Consensus size: 39
75348941 AGATATAACG
* ** *
75348951 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75348991 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75349031 ACTCGCACAAATGCCTTC-GGCCTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75349070 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
75349110 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75349143 CATCATTCAA
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75350811 original size:2 final size:2
Alignment explanation
Indices: 75350804--75350837 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75350794 TAGCTTCAAC
75350804 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75350838 CAGCACTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:75356362 original size:12 final size:12
Alignment explanation
Indices: 75356347--75356380 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
75356337 AATTCAAATT
*
75356347 ATAAATACTATA
1 ATAAATAATATA
75356359 ATAAATAATATA
1 ATAAATAATATA
75356371 ATAAATAATA
1 ATAAATAATA
75356381 GACATCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAAATAATATA
Found at i:75356777 original size:21 final size:23
Alignment explanation
Indices: 75356749--75356802 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
75356739 TACGACAGAT
*
75356749 AAGTGCCT-AAA-ACGACACACG
1 AAGTGCCTGAAATACGACACACA
*
75356770 AGGTGCCTGAAATACGACACACA
1 AAGTGCCTGAAATACGACACACA
75356793 AAGTGCCTGA
1 AAGTGCCTGA
75356803 TCAGTAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 7 0.25
22 3 0.11
23 18 0.64
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (23 bp):
AAGTGCCTGAAATACGACACACA
Found at i:75357038 original size:28 final size:29
Alignment explanation
Indices: 75357007--75357062 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
75356997 AACACACCAG
*
75357007 TATAATCC-TCCCAAACACACCAGAATAA
1 TATAATCCATCCAAAACACACCAGAATAA
75357035 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCCATCCAAAACACACCAGAATA
75357063 GCACAAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.48, C:0.30, G:0.04, T:0.18
Consensus pattern (29 bp):
TATAATCCATCCAAAACACACCAGAATAA
Found at i:75372333 original size:25 final size:25
Alignment explanation
Indices: 75372305--75372358 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
75372295 TCCTCTGAGT
*
75372305 TGAATAATGGTAAGCTCATACAAGC
1 TGAATAACGGTAAGCTCATACAAGC
*
75372330 TGAATAACGGTAAGCTCATACGAGC
1 TGAATAACGGTAAGCTCATACAAGC
75372355 TGAA
1 TGAA
75372359 ATCAATAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (25 bp):
TGAATAACGGTAAGCTCATACAAGC
Found at i:75373833 original size:24 final size:24
Alignment explanation
Indices: 75373805--75373856 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75373795 TTCGTAGGTG
* *
75373805 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
75373829 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
75373853 AAAT
1 AAAT
75373857 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:75377711 original size:48 final size:48
Alignment explanation
Indices: 75377488--75377808 Score: 226
Period size: 49 Copynumber: 6.7 Consensus size: 48
75377478 GATAATATGA
* * * * * *
75377488 CGATGCCATGTCCCAGACATGGTCTTACACTA--ATTAGCACATCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTAGCTTTA-TATATCGAGGC
* * *
75377536 CGATGCCATGTTCCAGACAGGTCTTACACTAACTTTCATATATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTT-ATATATCGAGGC
* * * * * *
75377585 CGATGCCGTGTCCTAGACAGGTATTACACTATCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TTATATATCGAG-GC
* * *
75377634 CGATGCCATGTCTCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-TATATATCGAGGC
* * * *
75377683 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCAT-T-TCAATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TTATATATCGAGGC
* * * * * *
75377729 TGATG-CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TTATATATCGAGGC
** * *
75377777 CGATG-CATGTTTCAAACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGC
75377809 ATACATATCA
Statistics
Matches: 219, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
46 38 0.17
47 14 0.06
48 78 0.36
49 86 0.39
50 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTATATATCGAGGC
Found at i:75377771 original size:94 final size:97
Alignment explanation
Indices: 75377488--75377808 Score: 303
Period size: 94 Copynumber: 3.3 Consensus size: 97
75377478 GATAATATGA
** ** * * *
75377488 CGATGCCATGTCCCAGACATGGTCTTACACTAATTAGCA-C-ATCAAAGTCGATGCCATGTTCCA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTATCAATGCCGATGCCATGTCCCA
* * * * *
75377551 GACAGGTCTTACACTAACT-TTCATATATTGAGGC
64 AACAGGTCTTACACTAGCTGGT-ATATCTCGAGGC
* * * * * ** *
75377585 CGATGCCGTGTCCTAGACAGGTATTACACTATCTCTCATCTATCGGTGCCGATGCCATGTCTCAA
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTATCAATGCCGATGCCATGTCCCAA
*
75377650 ACAGGTCTTACACTAGCTTGTATATCTCGAGGC
65 ACAGGTCTTACACTAGCTGGTATATCTCGAGGC
* *
75377683 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-T-TCAATGCTGATG-CATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTATCAATGCCGATGCCATGTCCCAAA
* * *
75377745 CATGTCTTACACTGGCTGGTATATCTCGAGGT
66 CAGGTCTTACACTAGCTGGTATATCTCGAGGC
** *
75377777 CGATGCATGTTTCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
75377809 ATACATATCA
Statistics
Matches: 185, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
94 66 0.36
95 9 0.05
96 14 0.08
97 46 0.25
98 49 0.26
99 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (97 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTATCAATGCCGATGCCATGTCCCAAA
CAGGTCTTACACTAGCTGGTATATCTCGAGGC
Found at i:75377817 original size:48 final size:46
Alignment explanation
Indices: 75377634--75377817 Score: 165
Period size: 48 Copynumber: 3.9 Consensus size: 46
75377624 CTATCGGTGC
* * *
75377634 CGATGCCATGTCTCAAACAGGTCTTACACTAGCTTGTATATCTCGAGG
1 CGATG-CATGTCCCAAACATGTCTTACACTAGC-TGCATATCTCGAGG
* * * *
75377682 CCGATGCATGTCCCAGACATGTCTTACACTAGCT-C-TCATTTCAATG
1 -CGATGCATGTCCCAAACATGTCTTACACTAGCTGCAT-ATCTCGAGG
* * *
75377728 CTGATGCATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGG
1 C-GATGCATGTCCCAAACATGTCTTACACTAGCT-GCATATCTCGAGG
** *
75377776 TCGATGCATGTTTCAAACATGTCTTACACTAGCATACATATC
1 -CGATGCATGTCCCAAACATGTCTTACACTAGC-TGCATATC
75377818 ACCCAATGTC
Statistics
Matches: 110, Mismatches: 18, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
45 2 0.02
46 37 0.34
47 1 0.01
48 62 0.56
49 8 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTGCATATCTCGAGG
Found at i:75379558 original size:13 final size:13
Alignment explanation
Indices: 75379542--75379566 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75379532 ATTATTTTAT
75379542 TAAATTTAAAATA
1 TAAATTTAAAATA
75379555 TAAATTTAAAAT
1 TAAATTTAAAAT
75379567 TTATGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAATTTAAAATA
Found at i:75393494 original size:136 final size:134
Alignment explanation
Indices: 75393208--75393479 Score: 368
Period size: 136 Copynumber: 2.0 Consensus size: 134
75393198 AGGGTGTTTT
*
75393208 ACCATCGGCAAATTCCAGGCATCTCTGTTCTACTTAAAGCAAGTATTTCATCATATTTTGATCAT
1 ACCATAGG-AAATTCCAGGCATCTCTGTTCTACTTAAAGCAAGTATTTCATCATATTTTGATCAT
* ** *
75393273 ATACAAAGCCCCACAACTGTAATATAAGGATTAAGTTAATGAAGCATAGCATCATGCTCGAAGGG
65 ATACAAAGCCCCACAACTGTAATATAAGGATTAAGTTAATGAAGCATA-CATCATGATAAAAGGA
*****
75393338 TGTTTT
129 TAAACA
*
75393344 ACCATCGGCAAATTCCAGGCATCTCTGTTCTACTTAAAGCAAGTATTTCATCATATTTTGATCCA
1 ACCATAGG-AAATTCCAGGCATCTCTGTTCTACTTAAAGCAAGTATTTCATCATATTTTGAT-CA
**
75393409 TATACAAAGCCCCACAACTGTAATATAAGGATTAAGTTAATGAAGCAT-CTAT-ATGATAAAATT
64 TATACAAAGCCCCACAACTGTAATATAAGGATTAAGTTAATGAAGCATAC-ATCATGATAAAAGG
75393472 ATAAACA
128 ATAAACA
75393479 A
1 A
75393480 GCCAAATATG
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
135 9 0.07
136 64 0.52
137 50 0.41
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (134 bp):
ACCATAGGAAATTCCAGGCATCTCTGTTCTACTTAAAGCAAGTATTTCATCATATTTTGATCATA
TACAAAGCCCCACAACTGTAATATAAGGATTAAGTTAATGAAGCATACATCATGATAAAAGGATA
AACA
Found at i:75402733 original size:5 final size:5
Alignment explanation
Indices: 75402723--75402750 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
75402713 AATTTGTTTG
75402723 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
75402751 CCAGTACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:75402972 original size:34 final size:34
Alignment explanation
Indices: 75402934--75402999 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
75402924 TTCTCTATAT
*
75402934 TATAACTCCATTTTAAACTAATGCCCTTAATAAC
1 TATAACTCCATTTTAAACTAATGCCCTCAATAAC
75402968 TATAACTCCATTTTAAACTAATGCCCTCAATA
1 TATAACTCCATTTTAAACTAATGCCCTCAATA
75403000 TCCATTTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (34 bp):
TATAACTCCATTTTAAACTAATGCCCTCAATAAC
Found at i:75403113 original size:21 final size:20
Alignment explanation
Indices: 75403065--75403118 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
75403055 CTACCATTGA
75403065 TTTTAATCTCACCATTACAC
1 TTTTAATCTCACCATTACAC
** *
75403085 TGACTAATCTCATCATTACTAC
1 T-TTTAATCTCACCATTAC-AC
*
75403107 TTTTAATGTCAC
1 TTTTAATCTCAC
75403119 TGCCCATCTA
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.41
Consensus pattern (20 bp):
TTTTAATCTCACCATTACAC
Found at i:75405714 original size:25 final size:25
Alignment explanation
Indices: 75405686--75405791 Score: 90
Period size: 25 Copynumber: 4.3 Consensus size: 25
75405676 CTCTCTCGAG
*
75405686 CATATAACAGAAAGCTCATGTGAGC
1 CATATAACAGGAAGCTCATGTGAGC
* * * *
75405711 CATATAACAGGAAGTTTATCTGAGA
1 CATATAACAGGAAGCTCATGTGAGC
* * **
75405736 TATATAACATGAAGCTCATAAGAGC
1 CATATAACAGGAAGCTCATGTGAGC
* * *
75405761 CATA-ATCGGGAAGCTCATGCGAGC
1 CATATAACAGGAAGCTCATGTGAGC
75405785 CA-ATAAC
1 CATATAAC
75405792 CAGTAGCTGC
Statistics
Matches: 61, Mismatches: 19, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
23 1 0.02
24 19 0.31
25 41 0.67
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (25 bp):
CATATAACAGGAAGCTCATGTGAGC
Found at i:75408061 original size:40 final size:40
Alignment explanation
Indices: 75407976--75408126 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
75407966 AATTGAATGA
* * *
75407976 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
75408016 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
75408057 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
75408096 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75408127 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:75408140 original size:40 final size:40
Alignment explanation
Indices: 75408012--75408142 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
75408002 TATGCTGGAA
* * *
75408012 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
75408052 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
75408092 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
75408132 ATTATATCCGG
1 ATTATATCCGG
75408143 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:75416158 original size:40 final size:40
Alignment explanation
Indices: 75416031--75416160 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
75416021 ATGCTGGAAA
* * *
75416031 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
75416071 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
75416111 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75416151 TTATATCCGG
1 TTATATCCGG
75416161 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75418963 original size:42 final size:42
Alignment explanation
Indices: 75418917--75419041 Score: 115
Period size: 42 Copynumber: 2.8 Consensus size: 42
75418907 TACGGGACCC
* * * *
75418917 CATATCAATGCCATGTCCTATACATTGTCTTACATGAAGTCT
1 CATATCAATGCCATATCCCAGACATGGTCTTACATGAAGTCT
* * *
75418959 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCA
1 CATATCAATGCCATATCCCAGACATGGTCTTACATGAAGTCT
* *
75419001 CATACCGAGGCCGATGCCATATCCCAGATATGGTCTTACAT
1 CATATC-A-----ATGCCATATCCCAGACATGGTCTTACAT
75419042 TGGCACACAT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 40 0.58
43 1 0.01
48 28 0.41
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGACATGGTCTTACATGAAGTCT
Found at i:75419034 original size:132 final size:131
Alignment explanation
Indices: 75418794--75419038 Score: 314
Period size: 132 Copynumber: 1.9 Consensus size: 131
75418784 AAATGCCAAA
* * *
75418794 GCCATGTCCTTGACATGGTCTTACATAGGTCTATATACCGATGCCATATCCTAGATATGGTCTTA
1 GCCATGTCCTTGACATGGTCTTACATAAGTCTATATA-CAATGCCATATCCCAGATATGGTCTTA
* * ** ** * *
75418859 TATGAAGTCTTATGTCGATGCCGATGCCATGTCCCAAACATGGTCTTATACGGGACCCCATATCA
65 CATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTATACGGGACCCCATATCA
75418924 AT
130 AT
*
75418926 GCCATGTCCTAT-ACATTGTCTTACATGAAGTCTCATAT-CAATGCCATATCCCAGATATGGTCT
1 GCCATGTCCT-TGACATGGTCTTACAT-AAGTCT-ATATACAATGCCATATCCCAGATATGGTCT
* *
75418989 TACATGAAATCACATACCGAGGCCGATGCCATATCCCAGATATGGTCTTA
63 TACATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTA
75419039 CATTGGCACA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
132 86 0.90
133 6 0.06
134 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (131 bp):
GCCATGTCCTTGACATGGTCTTACATAAGTCTATATACAATGCCATATCCCAGATATGGTCTTAC
ATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTATACGGGACCCCATATCAA
T
Found at i:75419051 original size:48 final size:46
Alignment explanation
Indices: 75418966--75419134 Score: 158
Period size: 48 Copynumber: 3.5 Consensus size: 46
75418956 TCTCATATCA
* ** *
75418966 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGAGGCCG
1 ATGCCATATCCCAGACATGGTCTTACATGGCA-CACATACC-ACGCCG
* * *
75419014 ATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCCG
1 ATGCCATATCCCAGACATGGTCTTACA-TGGCACACATA-CCACGCCG
* * * * * *
75419062 ATGTCATGTCTCGGACATGGTCTTACACTGGCTCTCATATCCACGCCG
1 ATGCCATATCCCAGACATGGTCTTACA-TGGCACACATA-CCACGCCG
*
75419110 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATATCCCAGACATGGTCTTA
75419135 TTTGAATTGA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
48 98 0.96
49 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCCATATCCCAGACATGGTCTTACATGGCACACATACCACGCCG
Found at i:75419053 original size:132 final size:131
Alignment explanation
Indices: 75418794--75419066 Score: 309
Period size: 132 Copynumber: 2.1 Consensus size: 131
75418784 AAATGCCAAA
* * *
75418794 GCCATGTCCTTGACATGGTCTTACATAGGTCTATATACCGATGCCATATCCTAGATATGGTCTTA
1 GCCATGTCCTTGACATGGTCTTACATAAGTCTATATA-CAATGCCATATCCCAGATATGGTCTTA
* * ** ** * * * * *
75418859 TATGAAGTCTTATGTCGATGCCGATGCCATGTCCCAAACATGGTCTTATACGGGACCCCATATCA
65 CATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTACACGGCACCACATATCA
75418924 AT
130 AT
*
75418926 GCCATGTCCTAT-ACATTGTCTTACATGAAGTCTCATAT-CAATGCCATATCCCAGATATGGTCT
1 GCCATGTCCT-TGACATGGTCTTACAT-AAGTCT-ATATACAATGCCATATCCCAGATATGGTCT
* * *
75418989 TACATGAAATCACATACCGAGGCCGATGCCATATCCCAGATATGGTCTTACATTGGCA-CACATA
63 TACATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTACA-CGGCACCACATA
75419053 TCAAT
127 TCAAT
75419058 GCCGATGTC
1 GCC-ATGTC
75419067 ATGTCTCGGA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
132 100 0.85
133 14 0.12
134 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (131 bp):
GCCATGTCCTTGACATGGTCTTACATAAGTCTATATACAATGCCATATCCCAGATATGGTCTTAC
ATGAAATCACATACCGAGGCCGATGCCATATCCCAAACATGGTCTTACACGGCACCACATATCAA
T
Found at i:75419191 original size:2 final size:2
Alignment explanation
Indices: 75419186--75419279 Score: 179
Period size: 2 Copynumber: 47.0 Consensus size: 2
75419176 TATATATATA
75419186 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
75419228 TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
75419270 TG TG TG TG TG
1 TG TG TG TG TG
75419280 AATGAATTCG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 90 1.00
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (2 bp):
TG
Found at i:75424250 original size:46 final size:46
Alignment explanation
Indices: 75424101--75424322 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 46
75424091 ATTCGTGTGT
* * * *
75424101 GAGCTAGTGTAAGAAATGTCTT-GGACATGCATCGGCCAC-ATTACGA
1 GAGCCAGTGTAAGACATGT-TTGGGACATGCATCGGCCTCGA-GACGA
* * *
75424147 GAGCCAGTGTAAGACCTTGTTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGACGA
* *
75424195 GGGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGAC-A
1 GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGA
* * *
75424240 TAAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGA
1 -GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGACGA
* ** *
75424287 TAGTTAATGTAAGACCATGTTTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCG
75424323 ACACCTTACC
Statistics
Matches: 145, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 75 0.52
47 36 0.25
48 30 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGA
Found at i:75431766 original size:46 final size:46
Alignment explanation
Indices: 75431708--75431928 Score: 209
Period size: 46 Copynumber: 4.7 Consensus size: 46
75431698 ATTCGTGTGT
* * *
75431708 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGA
*
75431754 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--TGA-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCATGATGA
* * * *
75431799 CGAAGACTAGTGTAAGGCATGTCTGGGACATGCATCAGCCTCGA-GACGTA
1 -G-AG-CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ATGATG-A
* *
75431849 -AGCCAGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGA
* * *
75431894 TAGTCAGTGTAAGACTATTTCTGGGACATGGCATC
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATC
75431929 AACACCTTAC
Statistics
Matches: 145, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
45 4 0.03
46 72 0.50
47 44 0.30
48 23 0.16
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGA
Found at i:75439487 original size:48 final size:48
Alignment explanation
Indices: 75439357--75439642 Score: 278
Period size: 48 Copynumber: 6.0 Consensus size: 48
75439347 GACATTTGGG
* * * * * *
75439357 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGACATCGG-AA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
*
75439404 TG-TAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TGAT-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
75439452 TGATATGTGCGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCA-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT
* *
75439500 -CATTATGAGAGAC-AGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGA-TATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
75439548 TGAGACGAGAGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * *
75439596 CGACATGTA-AGCCACTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 TGATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
75439643 ATTCACCCTC
Statistics
Matches: 196, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
46 1 0.01
47 41 0.21
48 148 0.76
49 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:75439540 original size:96 final size:96
Alignment explanation
Indices: 75439357--75439642 Score: 332
Period size: 96 Copynumber: 3.0 Consensus size: 96
75439347 GACATTTGGG
* * *
75439357 TGATATGTGTGCTAGTGTAAGACCATGT-TTGGAACATGACATCGG--A-ATGTAATGAGAGCCA
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCACAT-T-ATGAGAGCCA
75439418 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
63 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
75439452 TGATATGTGCGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCACATTATGAGAGACAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
75439517 TAAGACCATGTCTGGGACATGGCATCGACAT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * * *
75439548 TGAGACGAGAGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTA-AGCCAC
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCAC-ATTATG-AGAGCCAG
* *
75439611 TGTAAGACCATGTTTGGAACATGGCATCGGCA
64 TGTAAGACCATGTCTGGGACATGGCATCGGCA
75439643 ATTCACCCTC
Statistics
Matches: 165, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
95 37 0.22
96 122 0.74
97 4 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:75439633 original size:144 final size:143
Alignment explanation
Indices: 75439370--75439641 Score: 352
Period size: 144 Copynumber: 1.9 Consensus size: 143
75439360 TATGTGTGCT
* * *
75439370 AGTGTAAGACCATGTTTGGAACATGACATCGGAATGTAATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACCATGTCTGGAACATGACATCGGAATGTAACGAGAGCCAGAGTAAGACCATGTCTG
* * ** * *
75439435 GGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCA
66 GGACATGGCATCGGCATCGACATGTAAGCCACTGTAAGACCATATCTAGGACATGGCATCGGCCA
75439500 CATTATGAGAGAC
131 CATTATGAGAGAC
* * *
75439513 AGTGTAAGACCATGTCTGGGACATGGCATC-GACAT-TGAGACGAGAGCTAGAGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGAACATGACATCGGA-ATGT-A-ACGAGAGCCAGAGTAAGACCATGT
* * *
75439576 CTGGGACATGGCATCGGCCTCGACATGTAAGCCACTGTAAGACCATGT-TTGGAACATGGCATCG
63 CTGGGACATGGCATCGGCATCGACATGTAAGCCACTGTAAGACCATATCTAGG-ACATGGCATCG
75439640 GC
127 GC
75439642 AATTCACCCT
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
142 3 0.03
143 33 0.30
144 74 0.67
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (143 bp):
AGTGTAAGACCATGTCTGGAACATGACATCGGAATGTAACGAGAGCCAGAGTAAGACCATGTCTG
GGACATGGCATCGGCATCGACATGTAAGCCACTGTAAGACCATATCTAGGACATGGCATCGGCCA
CATTATGAGAGAC
Found at i:75440672 original size:11 final size:11
Alignment explanation
Indices: 75440656--75440682 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
75440646 AAGATTTGGT
75440656 CGTGTCATGGC
1 CGTGTCATGGC
75440667 CGTGTCATGGC
1 CGTGTCATGGC
75440678 CGTGT
1 CGTGT
75440683 GGGAGACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.26, G:0.37, T:0.30
Consensus pattern (11 bp):
CGTGTCATGGC
Found at i:75441165 original size:15 final size:15
Alignment explanation
Indices: 75441145--75441174 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75441135 CATAATCGAA
75441145 CACACATATTAATAG
1 CACACATATTAATAG
75441160 CACACATATTAATAG
1 CACACATATTAATAG
75441175 GTTTATCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
CACACATATTAATAG
Found at i:75445532 original size:18 final size:19
Alignment explanation
Indices: 75445479--75445533 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
75445469 ATTACAAAAT
*
75445479 AATTCAAAATAATTT-TCATA
1 AATTCAAAAT-ATTTAT-AAA
75445499 AATTCAAAATATTTATAAA
1 AATTCAAAATATTTATAAA
*
75445518 AATTCCAAA-ATTTATA
1 AATTCAAAATATTTATA
75445534 TTTTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.22
19 14 0.44
20 11 0.34
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTCAAAATATTTATAAA
Found at i:75461721 original size:324 final size:324
Alignment explanation
Indices: 75460763--75461731 Score: 1715
Period size: 325 Copynumber: 3.0 Consensus size: 324
75460753 CCCTTTGGAG
*
75460763 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCAGAAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
* * *
75460828 TTACTCAAGACCAGTTGCTATATGGATAAATTACCCCATACAACAGTAAGTGTTTCAACCTCCTC
66 TTACTC--GACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTC
*
75460893 TGTTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACATTATTATCTCTCT-
129 TGTTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACATTATTATCCCTCTA
75460957 AAATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATT
194 AAATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATT
75461022 ATTGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACATGCCAGGGTAAAA
259 ATTGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACATGCCAGGGTAAAA
75461087 T
324 T
* * * *
75461088 AAAAAGGTAACCACGCATGGGGCAAGCCCCAAGGTTATTTAAGATTCAACTGATCATAAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
* * *
75461153 TTACTAGACCAGTTCCCATATGGATAAATTACCCCATAAAACAATAAGTGTCTCAACCTCCTCTG
66 TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
*
75461218 TTGCTTGCTTGAAATAAAATAAAAAAACACTATGATTTCCCTTCTCTACGTTATTATCCCTCTAA
131 TTGCTTGCTTGAAATAAAAT-AAAAAACACTATGATTTCCCTTCTCTACATTATTATCCCTCTAA
*
75461283 AATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGACAGAAATTA
195 AATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATTA
*
75461348 TTGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGGCAAAAACATGCCAGGGTAAAAT
260 TTGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACATGCCAGGGTAAAAT
75461413 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
1 AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
** *
75461478 TTACTCGACCAGTTCCTATATTTATAAATTACCCCATACAATAATAAGTGTCTCAACCTCCTCTG
66 TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
*
75461543 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTTCATTATTATCCCTCTAAA
131 TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACATTATTATCCCTCTAAA
*
75461608 ATATTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATTAT
196 ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATTAT
*
75461673 TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACGTGCCAGGGT
261 TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACATGCCAGGGT
75461732 CTTCATCAAC
Statistics
Matches: 611, Mismatches: 31, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
323 74 0.12
324 203 0.33
325 334 0.55
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (324 bp):
AAAAAGGTAACCACGTATGGGGAAAGCCCCAAGGTTATTTATGATTAAACTGATCATAAAGGCAT
TTACTCGACCAGTTCCTATATGGATAAATTACCCCATACAACAATAAGTGTCTCAACCTCCTCTG
TTGCTTGCTTGAAATAAAATAAAAAACACTATGATTTCCCTTCTCTACATTATTATCCCTCTAAA
ATGTTGAAATTTTTTATAATAATTAAAGAAACAACTTTCAAGGTTTCCTAATTGATAGAAATTAT
TGTCTTGATACAATGATTGTTTCCAAGATGAAGAGAGAGAGTCAAAAACATGCCAGGGTAAAAT
Found at i:75465975 original size:24 final size:23
Alignment explanation
Indices: 75465948--75465993 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75465938 AAAATTTAAT
* *
75465948 AGCTATAGAGTCTTAATTAGAAAA
1 AGCT-TAGAGACTTAAATAGAAAA
*
75465972 AGCTTAGGGACTTAAATAGAAA
1 AGCTTAGAGACTTAAATAGAAA
75465994 TTATCCAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.26
Consensus pattern (23 bp):
AGCTTAGAGACTTAAATAGAAAA
Found at i:75467301 original size:51 final size:52
Alignment explanation
Indices: 75467184--75467396 Score: 302
Period size: 52 Copynumber: 4.1 Consensus size: 52
75467174 CATTTTTCGA
* * *
75467184 TGAGTGATCGGGCTCCGTTATGAGTATGCTATTTACTAAGCTTATAAAAGTG
1 TGAGTGATTGGGCTCCGTTATGAGTATGTTCTTTACTAAGCTTATAAAAGTG
* * * *
75467236 TGAGTGATTGGGCTCCATTATGAGTATTTTCTTTACCAA-CTTTTAAAAGTG
1 TGAGTGATTGGGCTCCGTTATGAGTATGTTCTTTACTAAGCTTATAAAAGTG
* * *
75467287 GGAGTGATTGGGCTCCGTTATGAGTATGTTCTATACTAAGCTTATAAAAATG
1 TGAGTGATTGGGCTCCGTTATGAGTATGTTCTTTACTAAGCTTATAAAAGTG
* * *
75467339 TGAGTGATTGGGCTTCGTTATGAGTATGTTCTTTACTAAGCTTTTAAAAGTA
1 TGAGTGATTGGGCTCCGTTATGAGTATGTTCTTTACTAAGCTTATAAAAGTG
75467391 TGAGTG
1 TGAGTG
75467397 GTTTGGAATT
Statistics
Matches: 140, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
51 45 0.32
52 95 0.68
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (52 bp):
TGAGTGATTGGGCTCCGTTATGAGTATGTTCTTTACTAAGCTTATAAAAGTG
Found at i:75467364 original size:103 final size:104
Alignment explanation
Indices: 75467185--75467389 Score: 322
Period size: 103 Copynumber: 2.0 Consensus size: 104
75467175 ATTTTTCGAT
* *
75467185 GAGTGATCGGGCTCCGTTATGAGTATGCTATTTACTAAGCTTATAAAAGTGTGAGTGATTGGGCT
1 GAGTGATCGGGCTCCGTTATGAGTATGCTATATACTAAGCTTATAAAAATGTGAGTGATTGGGCT
*
75467250 CCATTATGAGTATTTTCTTTACCAA-CTTTTAAAAGTGG
66 CCATTATGAGTATGTTCTTTACCAAGCTTTTAAAAGTGG
* * *
75467288 GAGTGATTGGGCTCCGTTATGAGTATGTTCTATACTAAGCTTATAAAAATGTGAGTGATTGGGCT
1 GAGTGATCGGGCTCCGTTATGAGTATGCTATATACTAAGCTTATAAAAATGTGAGTGATTGGGCT
* * *
75467353 TCGTTATGAGTATGTTCTTTACTAAGCTTTTAAAAGT
66 CCATTATGAGTATGTTCTTTACCAAGCTTTTAAAAGT
75467390 ATGAGTGGTT
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
103 81 0.88
104 11 0.12
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.38
Consensus pattern (104 bp):
GAGTGATCGGGCTCCGTTATGAGTATGCTATATACTAAGCTTATAAAAATGTGAGTGATTGGGCT
CCATTATGAGTATGTTCTTTACCAAGCTTTTAAAAGTGG
Found at i:75467715 original size:40 final size:40
Alignment explanation
Indices: 75467625--75467852 Score: 156
Period size: 40 Copynumber: 5.7 Consensus size: 40
75467615 AAATGATTTT
* * * *
75467625 ACAAGTTGTGTATCGGCAAAGCTCCTCCATGAG-TTAAGG
1 ACAAGTTGTGTATCAGCGAAGCTCCCCCATGAGCTTATGG
* * *
75467664 ATAAGTTGTGTATTAGCGAAGCTCCCCCGTGAGCTTATGG
1 ACAAGTTGTGTATCAGCGAAGCTCCCCCATGAGCTTATGG
* * ** *
75467704 ACAAGTTGTGTATCAACGGAGCTCCCCTTTGAGCTTATAG
1 ACAAGTTGTGTATCAGCGAAGCTCCCCCATGAGCTTATGG
* * * * * * * *
75467744 ATC-AGCTGCGTATCAGCAAAGCTCCTCTATGAACTAAT-A
1 A-CAAGTTGTGTATCAGCGAAGCTCCCCCATGAGCTTATGG
* * * * *
75467783 ATAAGTTGTGGATCAGTGAAGCTCCCCACGTGAGCTTAAGTG
1 ACAAGTTGTGTATCAGCGAAGCTCCCC-CATGAGCTTATG-G
* *
75467825 ATGAAGTTGTGTATCAGTGAAGCTCCCC
1 A-CAAGTTGTGTATCAGCGAAGCTCCCC
75467853 ATATGAACTT
Statistics
Matches: 143, Mismatches: 39, Indels: 10
0.74 0.20 0.05
Matches are distributed among these distances:
39 46 0.32
40 71 0.50
41 1 0.01
42 1 0.01
43 24 0.17
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (40 bp):
ACAAGTTGTGTATCAGCGAAGCTCCCCCATGAGCTTATGG
Found at i:75467841 original size:43 final size:43
Alignment explanation
Indices: 75467785--75467869 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
75467775 AACTAATAAT
* *
75467785 AAGTTGTGGATCAGTGAAGCTCCCCACGTGAGCTTAAGTGATG
1 AAGTTGTGGATCAGTGAAGCTCCCCACATGAACTTAAGTGATG
* *
75467828 AAGTTGTGTATCAGTGAAGCTCCCCATATGAACTTAAGTGAT
1 AAGTTGTGGATCAGTGAAGCTCCCCACATGAACTTAAGTGAT
75467870 AGTGCTCCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
AAGTTGTGGATCAGTGAAGCTCCCCACATGAACTTAAGTGATG
Found at i:75472721 original size:40 final size:40
Alignment explanation
Indices: 75472644--75472783 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
75472634 GATGTCCAGG
* * *
75472644 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGA
* *
75472684 CTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* * *
75472724 TTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA-CCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGA
* *
75472764 CTATGTCCCAAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTG
75472784 AATGAGTAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 73 0.87
41 10 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
Found at i:75480971 original size:40 final size:40
Alignment explanation
Indices: 75480911--75481067 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
75480901 CCCGGTTATA
* * * * *
75480911 GTAATTCGCGCAAATACCTTCGGGACTTAACCCAGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
*
75480951 GTAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
* *
75480991 GTAACTCGCACAAATGCCTTCGCGAATTAACCCGGATTTA
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
*
75481031 GTAACTCGCACAAATGCCTTCGAGAATTAACCCGGAT
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
75481068 ATCATTCGAA
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
Found at i:75480972 original size:80 final size:80
Alignment explanation
Indices: 75480874--75481067 Score: 230
Period size: 80 Copynumber: 2.4 Consensus size: 80
75480864 GGATATAGCT
* * * * * * * *
75480874 ACTCGCTCGATTGTCTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCGCAAATACCTTCGGGAC
1 ACTCGCACAATTGCCTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATACCTTCGCGAA
*
75480937 TTAACCCAGATTTGGTA
64 TTAACCCAGATTTAGTA
* *
75480954 ACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGCGAATT
1 ACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATACCTTCGCGAATT
*
75481019 AACCCGGATTTAGTA
66 AACCCAGATTTAGTA
* *
75481034 ACTCGCACAAATGCCTTCGAGAATTAACCCGGAT
1 ACTCGCACAATTGCCTTCGGGAATTAACCCGGAT
75481068 ATCATTCGAA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 95 0.97
81 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
ACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATACCTTCGCGAATT
AACCCAGATTTAGTA
Found at i:75483957 original size:40 final size:38
Alignment explanation
Indices: 75483900--75484084 Score: 165
Period size: 40 Copynumber: 4.7 Consensus size: 38
75483890 TCAAATGATG
75483900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTGACTA-A
* * *
75483940 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTGACTAA
* * *
75483979 TCCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACT-AA
* * * *
75484019 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTA-A
* * *
75484059 ACCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
75484085 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 82 0.65
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAA
Found at i:75484036 original size:79 final size:81
Alignment explanation
Indices: 75483901--75484084 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
75483891 CAAATGATGT
*
75483901 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
75483965 GTGCGAGTTACTA-ATC
66 ATGCGAGTTACTATA-A
* * **
75483981 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
75484043 TATGCGAGTTACTATAA
65 TATGCGAGTTACTATAA
* *
75484060 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75484085 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.65
80 31 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATAA
Found at i:75484106 original size:79 final size:78
Alignment explanation
Indices: 75483934--75484107 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 78
75483924 GTGCTAAGTG
* * * *
75483934 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
**
75483999 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* *
75484013 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCAA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCAA
*
75484076 AGGCATTTGAATGAG-T
62 AGGCATTTGAACGAGTT
75484092 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
75484108 ATTCCAAAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.04
79 52 0.65
80 25 0.31
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCAAAGGC
ATTTGAACGAGTT
Found at i:75486051 original size:135 final size:135
Alignment explanation
Indices: 75485875--75486145 Score: 533
Period size: 135 Copynumber: 2.0 Consensus size: 135
75485865 ATATAGATTA
75485875 AATGATATGTGATTGCCAAATGTGATTGTTAAGTGAATAATATTAGTTAAGTACTTAAGCAAATC
1 AATGATATGTGATTGCCAAATGTGATTGTTAAGTGAATAATATTAGTTAAGTACTTAAGCAAATC
*
75485940 TATTGTTTTACTTAAGCTTAAGCGCAAAGAGGATCAAAGTCGGATAGGGGAAAAGAGAAAGTAAA
66 TATTGTTTTACTTAAGCTTAAGCGCAAAGAGGATCAAAATCGGATAGGGGAAAAGAGAAAGTAAA
75486005 CGAAT
131 CGAAT
75486010 AATGATATGTGATTGCCAAATGTGATTGTTAAGTGAATAATATTAGTTAAGTACTTAAGCAAATC
1 AATGATATGTGATTGCCAAATGTGATTGTTAAGTGAATAATATTAGTTAAGTACTTAAGCAAATC
75486075 TATTGTTTTACTTAAGCTTAAGCGCAAAGAGGATCAAAATCGGATAGGGGAAAAGAGAAAGTAAA
66 TATTGTTTTACTTAAGCTTAAGCGCAAAGAGGATCAAAATCGGATAGGGGAAAAGAGAAAGTAAA
75486140 CGAAT
131 CGAAT
75486145 A
1 A
75486146 GCAGTGGGTA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (135 bp):
AATGATATGTGATTGCCAAATGTGATTGTTAAGTGAATAATATTAGTTAAGTACTTAAGCAAATC
TATTGTTTTACTTAAGCTTAAGCGCAAAGAGGATCAAAATCGGATAGGGGAAAAGAGAAAGTAAA
CGAAT
Found at i:75487042 original size:48 final size:48
Alignment explanation
Indices: 75486978--75487103 Score: 171
Period size: 48 Copynumber: 2.6 Consensus size: 48
75486968 AGGTAAATAT
* * *
75486978 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* * *
75487026 ATATGTATATGTGGTAAAGCCAAATTGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
** *
75487074 GGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
75487104 TTGTGCAATA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:75487129 original size:48 final size:47
Alignment explanation
Indices: 75486989--75487133 Score: 150
Period size: 48 Copynumber: 3.0 Consensus size: 47
75486979 TATATATGTG
* * *
75486989 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
* * *
75487037 TGGTAAAGCCAAATTGCTAATATGAAATATGTATGAG-GGATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
75487085 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTAT-TT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
75487132 TG
1 TG
75487134 TGGCCGAATG
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
47 4 0.05
48 74 0.93
49 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:75487312 original size:37 final size:37
Alignment explanation
Indices: 75487262--75487332 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
75487252 GGAAATATAT
* *
75487262 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTAGAGATTCTG
75487299 TCCGGGTAAGACCCGATGACCACGTGTAGAGATT
1 TCCGGGTAAGACCCGATGACCACGTGTAGAGATT
75487333 TTATCTGGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTAGAGATTCTG
Found at i:75494722 original size:29 final size:29
Alignment explanation
Indices: 75494690--75494821 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
75494680 ATAGTGAATC
75494690 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
75494719 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
75494749 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
75494778 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
75494807 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75494822 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:75494831 original size:59 final size:59
Alignment explanation
Indices: 75494690--75494821 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
75494680 ATAGTGAATC
75494690 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
75494749 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
75494807 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75494822 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:75496582 original size:20 final size:21
Alignment explanation
Indices: 75496544--75496582 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75496534 TTGAGTTGGT
75496544 CATACGGGCATGTTGCCCTTC
1 CATACGGGCATGTTGCCCTTC
*
75496565 CATACGGGCGTG-TGCCCT
1 CATACGGGCATGTTGCCCT
75496583 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (21 bp):
CATACGGGCATGTTGCCCTTC
Found at i:75505749 original size:40 final size:39
Alignment explanation
Indices: 75505690--75505919 Score: 257
Period size: 40 Copynumber: 5.8 Consensus size: 39
75505680 CGGATGATAA
* * * *
75505690 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
75505730 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
75505770 CCGGGCTAAGTCCCGAAGGCA-TTGTCCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
75505809 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
75505849 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* * * *
75505889 CTGGGCTATGTCCCAAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
75505920 AGCTATATCC
Statistics
Matches: 165, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 43 0.26
40 122 0.74
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:75505902 original size:119 final size:119
Alignment explanation
Indices: 75505690--75505912 Score: 315
Period size: 119 Copynumber: 1.9 Consensus size: 119
75505680 CGGATGATAA
* * *
75505690 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
75505755 TGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTGTCCGAGTTATTATAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTGTCCGAGTTATTATAT
* * *
75505809 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCAAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * *
75505872 GGTGCGAGTTACTATATCTGGGCTATGTCCCAAAGGCATTG
64 GGTGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTG
75505913 AGCGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
118 1 0.01
119 89 0.98
120 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (119 bp):
CCGGGCTAAGTCCCAAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTGTCCGAGTTATTATAT
Found at i:75505918 original size:79 final size:77
Alignment explanation
Indices: 75505690--75505929 Score: 286
Period size: 79 Copynumber: 3.0 Consensus size: 77
75505680 CGGATGATAA
* * *
75505690 CCGGGCTAAGTCCCAAAGGCATT-TGCGCTAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TATCGGGCTAAGTCCCGAAGGCATTT
* *
75505754 GTGCGAGTTATTACAT
63 GTGCGAG-TACTATAT
* * *
75505770 CCGGGCTAAGTCCCGAAGGCATTGTCCGAGTTATTATATCCGGGCTAAGTCCCGAAGGTATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT-CGGGCTAAGTCCCGAAGGCATTTGT
75505835 GCGAGCTACTATAT
65 GCGAG-TACTATAT
* *
75505849 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCTGGGCTATGTCCCAAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATC-GGGCTAAGTCCCGAAGGCATTTG
*
75505913 AGCGAGTAGCTATAT
64 TGCGAGTA-CTATAT
75505928 CC
1 CC
75505930 AGTTAAATCC
Statistics
Matches: 140, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 4 0.03
79 81 0.58
80 52 0.37
81 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTACTATAT
Found at i:75505927 original size:119 final size:119
Alignment explanation
Indices: 75505690--75505947 Score: 308
Period size: 119 Copynumber: 2.2 Consensus size: 119
75505680 CGGATGATAA
* * * * *
75505690 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGTATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* * * *
75505755 TGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTGTCCGAGTTATTATAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTGACCGAGTTACTATAT
*
75505809 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGTATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * * *
75505872 GGTGCGAGTTACTATATCTGGGCTATGTCCCAAAGGCATTGAGCGAG-TAGCTATAT
64 GGTGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTGACCGAGTTA-CTATAT
* * *
75505928 CC-AGTTAAATCCCGAAGGTA
1 CCGGGCTAAGTCCCGAAGGTA
75505948 CTTGGCTTGA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
118 18 0.15
119 100 0.84
120 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGTATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCAAAGGCATTGACCGAGTTACTATAT
Found at i:75513837 original size:40 final size:40
Alignment explanation
Indices: 75513733--75513988 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
75513723 CGGATGATAA
* * *
75513733 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
75513773 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75513812 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
75513852 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75513892 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
75513932 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
75513971 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75513989 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 15 0.08
39 48 0.25
40 132 0.68
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75519249 original size:21 final size:21
Alignment explanation
Indices: 75519208--75519250 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
75519198 ACTACCACAA
* * *
75519208 AAAAATAACAAATATAGAATT
1 AAAAACAACAAATACAAAATT
75519229 AAAAACAACAAATACAAAATT
1 AAAAACAACAAATACAAAATT
75519250 A
1 A
75519251 TTCAATAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAAACAACAAATACAAAATT
Found at i:75520108 original size:28 final size:28
Alignment explanation
Indices: 75520068--75520123 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
75520058 TGAGTAATGG
*
75520068 TGATGTGCGAGTGCAAATAAATTACATC
1 TGATGTGCAAGTGCAAATAAATTACATC
75520096 TGATGTGCAAGTGCAAATAAATTACATC
1 TGATGTGCAAGTGCAAATAAATTACATC
75520124 CACATCTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (28 bp):
TGATGTGCAAGTGCAAATAAATTACATC
Found at i:75521200 original size:22 final size:21
Alignment explanation
Indices: 75521165--75521221 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
75521155 AGTCTGTCTG
**
75521165 AGGTATCGTAATACCGAGGGGT
1 AGGTATCGCGATACCG-GGGGT
*
75521187 GGGTATCGCGATA-CGGGGGT
1 AGGTATCGCGATACCGGGGGT
*
75521207 AGGTGTCGCGATACC
1 AGGTATCGCGATACC
75521222 ATTATGTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 16 0.55
21 3 0.10
22 10 0.34
ACGTcount: A:0.21, C:0.18, G:0.40, T:0.21
Consensus pattern (21 bp):
AGGTATCGCGATACCGGGGGT
Found at i:75538667 original size:27 final size:27
Alignment explanation
Indices: 75538637--75538689 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
75538627 CGCAGTGCAT
75538637 TGCGGACTTAATATGCCACCAGTACTA
1 TGCGGACTTAATATGCCACCAGTACTA
75538664 TGCGGACTTAATATGCCACCAGTACT
1 TGCGGACTTAATATGCCACCAGTACT
75538690 CTATGAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
TGCGGACTTAATATGCCACCAGTACTA
Found at i:75538950 original size:2 final size:2
Alignment explanation
Indices: 75538943--75538971 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
75538933 CAACCTCACG
75538943 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75538972 CATAGTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75545305 original size:23 final size:24
Alignment explanation
Indices: 75545260--75545305 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
75545250 CCTATTACAT
75545260 GGCTCTTTGTGAGCATTCCTGATA
1 GGCTCTTTGTGAGCATTCCTGATA
75545284 GGCT-TTTCGTGAGC-TTCCTGAT
1 GGCTCTTT-GTGAGCATTCCTGAT
75545306 TAAAAGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.13, C:0.22, G:0.26, T:0.39
Consensus pattern (24 bp):
GGCTCTTTGTGAGCATTCCTGATA
Found at i:75549023 original size:25 final size:25
Alignment explanation
Indices: 75548995--75549073 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
75548985 TAGCTCGTAT
75548995 GAGCTTATCGATTTACAGCTCATGA
1 GAGCTTATCGATTTACAGCTCATGA
* *
75549020 GAGCTTA-CTGATTCT-TAGCTCGT-A
1 GAGCTTATC-GATT-TACAGCTCATGA
*
75549044 TGAGCTTATCGATTCACAGCTCATGA
1 -GAGCTTATCGATTTACAGCTCATGA
75549070 GAGC
1 GAGC
75549074 ATACCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
24 2 0.05
25 38 0.88
26 3 0.07
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (25 bp):
GAGCTTATCGATTTACAGCTCATGA
Found at i:75549063 original size:50 final size:50
Alignment explanation
Indices: 75548983--75549098 Score: 178
Period size: 50 Copynumber: 2.3 Consensus size: 50
75548973 GCGAACACAC
* * **
75548983 CATAGCTCGTATGAGCTTATCGATTTACAGCTCATGAGAGCTTACTGATT
1 CATAGCTCGTATGAGCTTATCGATTCACAGCTCATGAGAGCATACCAATT
*
75549033 CTTAGCTCGTATGAGCTTATCGATTCACAGCTCATGAGAGCATACCAATT
1 CATAGCTCGTATGAGCTTATCGATTCACAGCTCATGAGAGCATACCAATT
*
75549083 CATAGCTCTTATGAGC
1 CATAGCTCGTATGAGC
75549099 ATACTTGTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (50 bp):
CATAGCTCGTATGAGCTTATCGATTCACAGCTCATGAGAGCATACCAATT
Found at i:75549098 original size:25 final size:25
Alignment explanation
Indices: 75549030--75549102 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
75549020 GAGCTTACTG
* * * * *
75549030 ATTCTTAGCTCGTATGAGCTTATCG
1 ATTCATAGCTCTTATGAGCATACCA
* *
75549055 ATTCACAGCTCATGA-GAGCATACCA
1 ATTCATAGCTC-TTATGAGCATACCA
75549080 ATTCATAGCTCTTATGAGCATAC
1 ATTCATAGCTCTTATGAGCATAC
75549103 TTGTATATGA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
24 2 0.05
25 34 0.92
26 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (25 bp):
ATTCATAGCTCTTATGAGCATACCA
Found at i:75553428 original size:75 final size:75
Alignment explanation
Indices: 75553305--75553531 Score: 285
Period size: 75 Copynumber: 3.0 Consensus size: 75
75553295 AATGAAAAAC
* * * * *
75553305 TAGGATTATTCCGTTACTAATAAAGAAGACAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTC
1 TAGGATTATTCCATTATTAATAAAGAAAACAAATGGAAAGTTAGAAAAAAGAATTATATTCTTTC
75553370 CAAAAGAATA
66 CAAAAGAATA
* * * *
75553380 TAGGATTATTCCATTATTAATATAGAAAAAAAATGGAAAGTTAGAAAAATGAATTATATTATTTC
1 TAGGATTATTCCATTATTAATAAAGAAAACAAATGGAAAGTTAGAAAAAAGAATTATATTCTTTC
*
75553445 CAAAAAAACTA
66 CAAAAGAA-TA
* * * * *
75553456 CAGGATTATT-CATTTATTACTAGAGAATACAAATGGAAAGTTAGAAAAAAGAATTGTATTCTTT
1 TAGGATTATTCCA-TTATTAATAAAGAAAACAAATGGAAAGTTAGAAAAAAGAATTATATTCTTT
*
75553520 CCAGAAGAATA
65 CCAAAAGAATA
75553531 T
1 T
75553532 TAATGTTCAT
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
75 68 0.52
76 62 0.48
ACGTcount: A:0.48, C:0.08, G:0.14, T:0.30
Consensus pattern (75 bp):
TAGGATTATTCCATTATTAATAAAGAAAACAAATGGAAAGTTAGAAAAAAGAATTATATTCTTTC
CAAAAGAATA
Found at i:75553855 original size:138 final size:138
Alignment explanation
Indices: 75553507--75554069 Score: 792
Period size: 138 Copynumber: 4.1 Consensus size: 138
75553497 TAGAAAAAAG
* * * * *
75553507 AATTGTATTCTTTCCAGAAGAATATTAATGTT-CATGTTTTTTTTTATATTTTAACTGAAATTAA
1 AATTATATTCTTCCCAAAAGAATATTAAT-TTCCA---TTTCTTTTATATTTTGACTGAAATTAA
*
75553571 TTAATATAA-TCGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGCATGAA-C
62 TTAATATAACTC-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC
75553634 AAATTCATATATT
126 AAATTCATATATT
* * **
75553647 AATTATATTCTTCCCAAAAGAATAATAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTCCCAAAAGAATATTAATTTCCATTTCTTTTATATTTTGACTGAAATTAATTAA
* *
75553712 TATAACTCTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAATTT
66 TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
75553777 CATATATT
131 CATATATT
* * * *
75553785 AATTATATTCTTTCCAAAAGAATATTAATTTCCATCTATTTTATATTTTGATTGAAACTT-ATTA
1 AATTATATTCTTCCCAAAAGAATATTAATTTCCATTTCTTTTATATTTTGACTGAAA-TTAATTA
* * *
75553849 ACATAACTGTTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAATCAAAT
65 ATATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
75553914 TCATATATT
130 TCATATATT
* *
75553923 AATTATATTCTTCCCAAAATAATATTAATTTCTATTTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTCCCAAAAGAATATTAATTTCCATTTCTTTTATATTTTGACTGAAATTAATTAA
* * * * *
75553988 TATAAATGTTTATATTAATGAATTAGGTAAAATATATACAATTAATATTTTTGTATGAATCAAAC
66 TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAAT
*
75554053 TCATAAATT
130 TCATATATT
75554062 AATTATAT
1 AATTATAT
75554070 CTATGTTCTC
Statistics
Matches: 380, Mismatches: 37, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
137 81 0.21
138 236 0.62
139 36 0.09
140 27 0.07
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTCCCAAAAGAATATTAATTTCCATTTCTTTTATATTTTGACTGAAATTAATTAA
TATAACTCTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:75555843 original size:25 final size:25
Alignment explanation
Indices: 75555815--75555876 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
75555805 TTTCTAACTA
* *
75555815 ATCACTAAATTGATAAAATTTTCCT
1 ATCAATAAATTCATAAAATTTTCCT
** *
75555840 ATCAATATTTTCATACAATTTTCCT
1 ATCAATAAATTCATAAAATTTTCCT
75555865 ATCATATAAATT
1 ATCA-ATAAATT
75555877 TTCAAGCAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (25 bp):
ATCAATAAATTCATAAAATTTTCCT
Found at i:75559873 original size:48 final size:48
Alignment explanation
Indices: 75559809--75559996 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 48
75559799 ATGTGAGTAT
* * * *
75559809 TGAGATCTCGTATAAGACCATATTTGGGAAATGGAACCGGCATCAAAA
1 TGAGATCCCGTGTAAGACCATATTTGGGATATGGAATCGGCATCAAAA
*
75559857 TGAGATCCCGTGTAAGACAATATTTGGGATAT-GACATCGGCATCAAAA
1 TGAGATCCCGTGTAAGACCATATTTGGGATATGGA-ATCGGCATCAAAA
* * * * * **
75559905 TGAGATCCCGTGTAAGACTATATCTGGGATGTGGCATCAGCATCAGTA
1 TGAGATCCCGTGTAAGACCATATTTGGGATATGGAATCGGCATCAAAA
* * * *
75559953 TAAGATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATC
1 TGAGATCCCGTGTAAGACCATATTTGGGATATGGAATCGGCATC
75559997 GATATGAGGT
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.02
48 116 0.97
49 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATTTGGGATATGGAATCGGCATCAAAA
Found at i:75560070 original size:96 final size:96
Alignment explanation
Indices: 75559809--75560042 Score: 234
Period size: 96 Copynumber: 2.4 Consensus size: 96
75559799 ATGTGAGTAT
* * * ** * * * ** *
75559809 TGAGATCTCGTATAAGACCATATTTGGGAAATGGAACCGGCATCAAAATGAGATCCCGTGTAAGA
1 TGAGATCCCGAATAAGACCATATCTGGGATGTGGCATCAGCATCAGTATAAGATCCCGTGTAAGA
*
75559874 CAATATTTGGGATATGACATCGGCATCAAAA
66 CCATATTTGGGATATGACATCGGCATCAAAA
** * *
75559905 TGAGATCCCGTGTAAGACTATATCTGGGATGTGGCATCAGCATCAGTATAAGATCCCATGTAAGA
1 TGAGATCCCGAATAAGACCATATCTGGGATGTGGCATCAGCATCAGTATAAGATCCCGTGTAAGA
* * * *
75559970 CCATATTTGGGATATGGCATTGGCATCGATA
66 CCATATTTGGGATATGACATCGGCATCAAAA
* ** * * *
75560001 TGAGGTCTTGAATAAGACCATGTCTGGGTTTTGGCATCAGCA
1 TGAGATCCCGAATAAGACCATATCTGGGATGTGGCATCAGCA
75560043 CCGTTATGAG
Statistics
Matches: 111, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
96 111 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (96 bp):
TGAGATCCCGAATAAGACCATATCTGGGATGTGGCATCAGCATCAGTATAAGATCCCGTGTAAGA
CCATATTTGGGATATGACATCGGCATCAAAA
Found at i:75565615 original size:43 final size:43
Alignment explanation
Indices: 75565554--75565641 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
75565544 TATAAAGTGG
75565554 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
1 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
75565597 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
1 ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
75565640 AT
1 AT
75565642 TTAGATTTGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.42
Consensus pattern (43 bp):
ATGCGTTAGTGATTGCATACGTTACATGATATTTTGGATTCGT
Found at i:75566677 original size:48 final size:48
Alignment explanation
Indices: 75566621--75566988 Score: 329
Period size: 48 Copynumber: 7.8 Consensus size: 48
75566611 ATGTGAGTAT
* * * *
75566621 TGAGATCCCGTATAAGACCATATCTGTGATATGGCATCGGCATCAAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * ** *
75566669 TGAGATCCCGTGTAAGACAATATCTAGGATATGGCATCAACATCGAAA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
* **
75566717 TGAAATCCCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * * *
75566765 TGAGATCCCGTGTAAAATCATATTTGGGATATGGCATTGGCATC-AGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGA-TA
* * * *
75566813 TGAGGTCCCATGTAAGACCATATCTGGGATATGGCATTGGCATTGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * * * * *
75566861 TGAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGGCA-CCATTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGA-TA
* * * * * *
75566909 TGAG-GCTTCATGTAAGACCATAGCTGGG-T-T-G--TTGGCATCGATG
1 TGAGATC-CCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * * *
75566952 TGAGATCTCATGTAAGACCATGTCTGGGACATGGCAT
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCAT
75566989 TGAAATCTTT
Statistics
Matches: 262, Mismatches: 47, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
43 29 0.11
44 3 0.01
45 2 0.01
46 2 0.01
47 3 0.01
48 222 0.85
49 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGATA
Found at i:75568725 original size:31 final size:31
Alignment explanation
Indices: 75568703--75568805 Score: 179
Period size: 31 Copynumber: 3.3 Consensus size: 31
75568693 CGGGCTGAGG
75568703 ACACGGGCGTGTGTGACCACACGGCCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
75568734 ACACGGGCGTGTGTGACCACACGGCCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
* * *
75568765 ATACGGGCGTGTGTGACCACACGACTTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
75568796 ACACGGGCGT
1 ACACGGGCGT
75568806 ATGACTCTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.15
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGGCCTACCC
Found at i:75568726 original size:18 final size:18
Alignment explanation
Indices: 75568703--75568757 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
75568693 CGGGCTGAGG
75568703 ACACGGGCGTGTGTGACC
1 ACACGGGCGTGTGTGACC
*
75568721 ACAC-GGC----CT-ACC
1 ACACGGGCGTGTGTGACC
75568733 CACACGGGCGTGTGTGACC
1 -ACACGGGCGTGTGTGACC
75568752 ACACGG
1 ACACGG
75568758 CCTACCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 14
0.64 0.05 0.32
Matches are distributed among these distances:
12 3 0.11
13 5 0.18
14 3 0.11
17 3 0.11
18 11 0.39
19 3 0.11
ACGTcount: A:0.20, C:0.35, G:0.33, T:0.13
Consensus pattern (18 bp):
ACACGGGCGTGTGTGACC
Found at i:75571281 original size:138 final size:138
Alignment explanation
Indices: 75571029--75571729 Score: 1077
Period size: 138 Copynumber: 5.1 Consensus size: 138
75571019 TAGAAAAAGG
* *
75571029 AATTATATTATTTTCAAAAGAATATTAATTT-TCATGTCTTTTATATTTTGACTGAAATTAATTA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCT-ATGTCTTTTATATTTTGACCGAAATTAATTA
* *
75571093 ATATAACTGA-TTATATTAATAAATTCGGTAAAATATATAAAATTACTATTTTGTATGAATCAAA
65 ATATAACT-ATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAA
75571157 TTCATATATT
129 TTCATATATT
* *
75571167 AATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGATCGAAATTAGTTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
75571232 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAGTCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
75571297 CATATATATT
131 C--ATATATT
* * * *
75571307 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGGCTGAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
*
75571372 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
75571437 CATATATT
131 CATATATT
* * * * * * *
75571445 ACTTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
75571510 TATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
75571575 CATATATT
131 CATATATT
75571583 AATTATATTC-TTTCTAAAAGAATATTAATTT-TCATGTCTTTTATATTTTGACCGAAATTAATT
1 AATTATATTCTTTTC-AAAAGAATATTAATTTCT-ATGTCTTTTATATTTTGACCGAAATTAATT
*
75571646 AATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTTGTATGAATCAA
64 AATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAA
*
75571711 ATTTATATATT
128 ATTCATATATT
75571722 AATTATAT
1 AATTATAT
75571730 CTATGTTCTC
Statistics
Matches: 516, Mismatches: 40, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
137 3 0.01
138 351 0.68
139 34 0.07
140 128 0.25
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:75571440 original size:67 final size:67
Alignment explanation
Indices: 75571366--75571591 Score: 171
Period size: 67 Copynumber: 3.3 Consensus size: 67
75571356 GGCTGAAATT
* *
75571366 AATTCATATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAAT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
75571431 CA
66 CA
* * ** * *
75571433 AATTCATAT-ATTACTTATATT-CT---TTCCAAAAGAATATCAATTTCCATATCTTTTATATTT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAA-AATAT--A--TACA-A-C--TAATATTT
** *
75571493 TG-ACCAAAAT-T
57 TGTA--TGAATCA
* *
75571504 AATTCATATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGAAT
1 AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
75571569 CA
66 CA
*
75571571 AATTCATAT-ATTAATTATATT
1 AATTCATATAATTATTTATATT
75571592 CTTTCTAAAA
Statistics
Matches: 118, Mismatches: 23, Indels: 37
0.66 0.13 0.21
Matches are distributed among these distances:
62 5 0.04
63 5 0.04
65 2 0.02
66 24 0.20
67 30 0.25
68 2 0.02
69 1 0.01
70 2 0.02
71 21 0.18
72 14 0.12
73 2 0.02
75 5 0.04
76 5 0.04
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (67 bp):
AATTCATATAATTATTTATATTAATAAATTCCGTAAAATATATACAACTAATATTTTGTATGAAT
CA
Found at i:75571526 original size:278 final size:276
Alignment explanation
Indices: 75571029--75571729 Score: 1136
Period size: 278 Copynumber: 2.5 Consensus size: 276
75571019 TAGAAAAAGG
*
75571029 AATTATATTATTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
* *
75571094 TATAACTGA-TTATATTAATAAATTCGGTAAAATATATAAAATTACTATTTTGTATGAATCAAAT
66 TATAACT-ATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
* * * * * *
75571158 TCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGATCGAA
130 TCATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAA
* * *
75571223 ATTAGTTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
195 ATTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATG
*
75571288 AGTCAAATTCATATATATT
260 AATCAAATTC--ATATATT
* * *
75571307 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGGCTGAAATTAATTCA
1 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
*
75571372 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAACTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
75571437 CATATATTACTTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
131 CATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
* *
75571502 TTAATTCATATAATTATTTATATTAATAAATTCTGTAAAATATATACAAGTAATATTTTGTATGA
196 TTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATGA
75571567 ATCAAATTCATATATT
261 ATCAAATTCATATATT
*
75571583 AATTATATTC-TTTCTAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTTC-AAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTA
*
75571647 ATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTTGTATGAATCAAA
65 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTTTGTATGAATCAAA
*
75571712 TTTATATATTAATTATAT
129 TTCATATATTAATTATAT
75571730 CTATGTTCTC
Statistics
Matches: 392, Mismatches: 28, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
275 4 0.01
276 108 0.28
277 33 0.08
278 247 0.63
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (276 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATTAATTATATTCTTTCCAAAAGAATATCAATTTCCATATCTTTTATATTTTGACCAAAA
TTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAAGTAATATTTTGTATGA
ATCAAATTCATATATT
Found at i:75572830 original size:20 final size:21
Alignment explanation
Indices: 75572800--75572852 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
75572790 TCGAAACCAT
*
75572800 TATATCAATACTTA-TTGAAAA
1 TATATCGATACTTAGTT-AAAA
75572821 -ATATCGATACTTAGTTAAAA
1 TATATCGATACTTAGTTAAAA
*
75572841 TGTATCGATACT
1 TATATCGATACT
75572853 CTTGGGACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (21 bp):
TATATCGATACTTAGTTAAAA
Found at i:75576972 original size:21 final size:21
Alignment explanation
Indices: 75576946--75576986 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
75576936 AGAGTCTTTT
75576946 ACTTAGTTAAATATGCATTTG
1 ACTTAGTTAAATATGCATTTG
75576967 ACTTAGTTAAATATGCATTT
1 ACTTAGTTAAATATGCATTT
75576987 TACTGATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (21 bp):
ACTTAGTTAAATATGCATTTG
Found at i:75579342 original size:15 final size:15
Alignment explanation
Indices: 75579322--75579350 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75579312 ACAGGGAACT
75579322 TTATAAGCCACATCA
1 TTATAAGCCACATCA
75579337 TTATAAGCCACATC
1 TTATAAGCCACATC
75579351 TCATAGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (15 bp):
TTATAAGCCACATCA
Found at i:75582509 original size:138 final size:138
Alignment explanation
Indices: 75582256--75582516 Score: 416
Period size: 138 Copynumber: 1.9 Consensus size: 138
75582246 ATGTCATTAG
* * *
75582256 GGTTACCATGTTTCAGGTGCTGGTCCTTAATATCCTACCGATGGCTAAGGTCCGGCATTAGTTGC
1 GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
* *
75582321 GGATACTCATCATCTTGTGTGAGCAACATCATGTAGCTTACATTCTGACCGTTAGCTTGTGTGAG
66 GAATACTCATCAACTTGTGTGAGCAACATCATGTAGCTTACATTCTGACCGTTAGCTTGTGTGAG
75582386 CAGACCCA
131 CAGACCCA
* * *
75582394 GGTTACCATGTTTCAGGTGCTGGTCCTGAATGTCCTACCAATGGCTGAGGTCTGACATTAGTTGC
1 GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
* *
75582459 GAATACTCATTAACTTGTGTGAGCAGCATCATGTAGCTTACATT-TCGACCGTTAGCTT
66 GAATACTCATCAACTTGTGTGAGCAACATCATGTAGCTTACATTCT-GACCGTTAGCTT
75582517 ATATAAGTAG
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
137 1 0.01
138 111 0.99
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (138 bp):
GGTTACCATGTTTCAGGTGCTGGTCCTGAATATCCTACCAATGGCTAAGGTCCGACATTAGTTGC
GAATACTCATCAACTTGTGTGAGCAACATCATGTAGCTTACATTCTGACCGTTAGCTTGTGTGAG
CAGACCCA
Found at i:75587097 original size:26 final size:25
Alignment explanation
Indices: 75587061--75587170 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 25
75587051 TGGTACAAAT
75587061 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
*
75587087 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
75587113 TGATAATGGGTTAGGTAAATGTCTCA
1 TGATAATAGGTTAGGTAAATGT-TCA
*
75587139 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
75587165 TGATAA
1 TGATAA
75587171 GAATTTCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
26 75 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:75588662 original size:26 final size:26
Alignment explanation
Indices: 75588599--75588674 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
75588589 AAAAGTAGCT
* * * *
75588599 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGCA
75588627 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
75588653 AAATTACTGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
75588675 GTTAATTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:75588818 original size:27 final size:27
Alignment explanation
Indices: 75588775--75588887 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
75588765 GAGGAAGCGT
*
75588775 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
75588802 TCTGGTGGCTCTACCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
75588829 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
75588857 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
75588883 TCTGG
1 TCTGG
75588888 CAGCTATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:75588880 original size:54 final size:54
Alignment explanation
Indices: 75588773--75588896 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
75588763 TGGAGGAAGC
*
75588773 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTACCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
* * * **
75588827 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCT
**
75588881 GTTCTGGCAGCTATGC
1 GTTCTGGTGGCTATGC
75588897 TGCAAATTCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 43 0.72
55 17 0.28
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
Found at i:75609561 original size:47 final size:47
Alignment explanation
Indices: 75609489--75609848 Score: 549
Period size: 47 Copynumber: 7.5 Consensus size: 47
75609479 CCCTTCGGGA
* * * * * * *
75609489 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75609536 CTTATCACATATATAAACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75609583 CTTATCACATATATATACACCTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75609632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75609679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75609726 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75609775 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75609822 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
75609849 AATTTTAATA
Statistics
Matches: 290, Mismatches: 17, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
47 185 0.64
49 105 0.36
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75609652 original size:96 final size:95
Alignment explanation
Indices: 75609489--75609848 Score: 537
Period size: 96 Copynumber: 3.8 Consensus size: 95
75609479 CCCTTCGGGA
* * * * * * *
75609489 CTTATCACATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCTTATCAC-ATATATAA
1 CTTATCACATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACTATATATAC
*
75609552 ACTTTCACATTCATCACATTGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
75609583 CTTATCACATATATATACACCTTCACATTCATCATATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
75609647 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75609679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
*
75609744 ACCTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
75609775 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
75609840 ACTTTCACA
65 ACTTTCACA
75609849 AATTTTAATA
Statistics
Matches: 246, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
94 53 0.22
96 190 0.77
97 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75609747 original size:143 final size:143
Alignment explanation
Indices: 75609489--75609848 Score: 603
Period size: 143 Copynumber: 2.5 Consensus size: 143
75609479 CCCTTCGGGA
* * * * * * * *
75609489 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATAAAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
75609554 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
75609619 TCGGCCATTAGGC
131 TCGGCCATTAGGC
75609632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75609697 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
75609762 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
75609775 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
75609840 ACTTTCACA
64 ACTTTCACA
75609849 AATTTTAATA
Statistics
Matches: 204, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
143 187 0.92
145 17 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:75613699 original size:40 final size:40
Alignment explanation
Indices: 75613650--75614081 Score: 774
Period size: 40 Copynumber: 10.8 Consensus size: 40
75613640 CCAGCATGAT
**
75613650 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
75613690 TGCTCTTCGGGACTTAGCCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
75613730 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
75613770 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
*
75613810 TACTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
75613850 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
75613890 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
* *
75613930 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
75613970 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
75614010 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
75614050 TGCTCTTCGGGATTTAGCCCGGATACATCACT
1 TGCTCTTCGGGATTTAGCCCGGATACATCACT
75614082 CTCAATTCTC
Statistics
Matches: 380, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 380 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
Found at i:75616280 original size:47 final size:47
Alignment explanation
Indices: 75616208--75616567 Score: 558
Period size: 47 Copynumber: 7.5 Consensus size: 47
75616198 CCCTTCGGGA
* * * * * * *
75616208 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75616255 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75616302 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75616351 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75616398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75616445 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75616494 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75616541 CTTATCACGTATATATACACTTTCACA
1 CTTATCAC--ATATATACACTTTCACA
75616568 AATTTTAATA
Statistics
Matches: 294, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 186 0.63
49 108 0.37
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75616370 original size:96 final size:95
Alignment explanation
Indices: 75616208--75616567 Score: 546
Period size: 96 Copynumber: 3.8 Consensus size: 95
75616198 CCCTTCGGGA
* * * * * *
75616208 CTTATCACATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCTTATCAC-ATATATAC
1 CTTATCACATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACTATATATAC
*
75616271 ACTTTCACATTCATCACATTGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
75616302 CTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
75616366 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
*
75616398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
*
75616463 ACCTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
75616494 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATATAC
1 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
75616559 ACTTTCACA
65 ACTTTCACA
75616568 AATTTTAATA
Statistics
Matches: 249, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
94 53 0.21
96 193 0.78
97 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75616466 original size:143 final size:143
Alignment explanation
Indices: 75616208--75616567 Score: 612
Period size: 143 Copynumber: 2.5 Consensus size: 143
75616198 CCCTTCGGGA
* * * * * * *
75616208 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75616273 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
75616338 TTGGCCATTAGGC
131 TCGGCCATTAGGC
75616351 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75616416 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
75616481 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
75616494 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
75616559 ACTTTCACA
64 ACTTTCACA
75616568 AATTTTAATA
Statistics
Matches: 205, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
143 188 0.92
145 17 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:75622286 original size:20 final size:20
Alignment explanation
Indices: 75622261--75622298 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75622251 ATACTTTAAC
75622261 AAAAGGTATCAATACCTTAT
1 AAAAGGTATCAATACCTTAT
*
75622281 AAAAGGTATCTATACCTT
1 AAAAGGTATCAATACCTT
75622299 TGTGCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAAGGTATCAATACCTTAT
Found at i:75626044 original size:44 final size:42
Alignment explanation
Indices: 75625940--75626054 Score: 133
Period size: 44 Copynumber: 2.7 Consensus size: 42
75625930 AGTTCGTACA
* * *
75625940 ATGCCAACGTCCCAGACGTGGTCTGACATGTAATCAAATACCG
1 ATGCCAATGTCCAAGACGTGGTCTTACATGTAATCAAATA-CG
* *
75625983 ATGCCACTGTCCCAGACGTGGTCTTACATGTAAATCATAAGT-CG
1 ATGCCAATGTCCAAGACGTGGTCTTACATGT-AATCA-AA-TACG
*
75626027 ATGCCAATGTCTAAGACGTGGTCTTACA
1 ATGCCAATGTCCAAGACGTGGTCTTACA
75626055 CGATAACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 28 0.44
44 32 0.51
45 2 0.03
46 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCAAGACGTGGTCTTACATGTAATCAAATACG
Found at i:75627803 original size:6 final size:6
Alignment explanation
Indices: 75627792--75627841 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
75627782 CCTGTAATAG
* * * *
75627792 CATATA CATATA CATATA CAAAAA CATATA CATATA CAAATA TATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
75627840 CA
1 CA
75627842 CATCATTCAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (6 bp):
CATATA
Found at i:75627820 original size:18 final size:18
Alignment explanation
Indices: 75627797--75627841 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
75627787 AATAGCATAT
75627797 ACATATACATATACAAAA
1 ACATATACATATACAAAA
*
75627815 ACATATACATATACAAAT
1 ACATATACATATACAAAA
*
75627833 ATATATACA
1 ACATATACA
75627842 CATCATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.27
Consensus pattern (18 bp):
ACATATACATATACAAAA
Found at i:75629961 original size:47 final size:47
Alignment explanation
Indices: 75629888--75630161 Score: 229
Period size: 47 Copynumber: 5.9 Consensus size: 47
75629878 AGGGTAAGGT
* * *
75629888 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * **
75629935 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ACCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATC-TCAA
* * *
75629983 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGTTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AA
* * ***
75630029 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * * ***
75630074 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAA
* * *
75630123 GCCAATG-CATGTCCTAGACAT-GTCTTACACTAGCTCACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA
75630162 CATGAATGAC
Statistics
Matches: 188, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.01
46 77 0.41
47 78 0.41
48 30 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:75630148 original size:140 final size:141
Alignment explanation
Indices: 75629888--75630153 Score: 360
Period size: 140 Copynumber: 1.9 Consensus size: 141
75629878 AGGGTAAGGT
* * * *
75629888 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATGTCCCAG
** *
75629953 ACATGGTCTTACACTGACTACCATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGTT
66 ACATGGTCTTACACTGACTACCATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGTT
75630018 TACATCTCGAG
131 TACATCTCGAG
* * * *
75630029 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCCCTTGTCTCAATGCCGATGCCATGTCCTA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAA-GCCGATGCCATGTCCCA
* *
75630092 GACATGGTCTTACACT-AGCT-CTCATAATGTGGCCAATGCATGTCCTAGACATGTCTTACACT
65 GACATGGTCTTACACTGA-CTAC-CATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACT
75630154 AGCTCACACA
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
139 22 0.20
140 80 0.73
141 7 0.06
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCCCATATCTCAAGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTACCATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGTT
TACATCTCGAG
Found at i:75630158 original size:46 final size:46
Alignment explanation
Indices: 75629937--75630158 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
75629927 TATCTCAAGT
** *
75629937 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTAC-CATCTTGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CT-CTCATAATGTGGC
* * * *
75629985 CGATGCATGTCCCAGACATGTCTTACACT-GGTTTACAT-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGGC
*
75630031 CGATGCATGTCCCAGACATGTCTTACACTAGCCCTTGTC-TCAA--T-GC
1 CGATGCATGTCCCAGACATGTCTTACACTAG--C-TCTCAT-AATGTGGC
*
75630077 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGC
* *
75630125 CAATGCATGTCCTAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
75630159 ACACATGAAT
Statistics
Matches: 147, Mismatches: 12, Indels: 32
0.77 0.06 0.17
Matches are distributed among these distances:
45 7 0.05
46 70 0.48
47 43 0.29
48 24 0.16
49 1 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGC
Found at i:75634498 original size:83 final size:83
Alignment explanation
Indices: 75634359--75634517 Score: 282
Period size: 83 Copynumber: 1.9 Consensus size: 83
75634349 AGTATTTCAC
* * *
75634359 TGTAACACCCCTAACCCCTCTCTATCATTAGATTAAGGTCACGGGCATTACTAACCAATGAGAAC
1 TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACGGGCATTACTAACCAATCAGAAC
75634424 ATTTAATTTCAAACTAAA
66 ATTTAATTTCAAACTAAA
*
75634442 TGTAACACCCCTAACCCCTCTCCATCATCAGATTAGGGTCACGGGCATTACTAACCAATCAGAAC
1 TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACGGGCATTACTAACCAATCAGAAC
75634507 ATTTAATTTCA
66 ATTTAATTTCA
75634518 TCGCAAGCGA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 72 1.00
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (83 bp):
TGTAACACCCCTAACCCCTCTCCATCATCAGATTAAGGTCACGGGCATTACTAACCAATCAGAAC
ATTTAATTTCAAACTAAA
Found at i:75635161 original size:20 final size:21
Alignment explanation
Indices: 75635136--75635175 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75635126 TCAATTACCA
*
75635136 ACATTT-AACCTATTTAAAAC
1 ACATTTAAACATATTTAAAAC
75635156 ACATTTAAACATATTTAAAA
1 ACATTTAAACATATTTAAAA
75635176 GATGCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (21 bp):
ACATTTAAACATATTTAAAAC
Found at i:75638390 original size:24 final size:24
Alignment explanation
Indices: 75638358--75638408 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
75638348 ACGTAGCAAG
75638358 TATGAGTTTAACTATACATGCCAT
1 TATGAGTTTAACTATACATGCCAT
75638382 TATGAGTTTAACTATACATGCCAT
1 TATGAGTTTAACTATACATGCCAT
75638406 TAT
1 TAT
75638409 ATAATTTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (24 bp):
TATGAGTTTAACTATACATGCCAT
Found at i:75646784 original size:21 final size:22
Alignment explanation
Indices: 75646743--75646796 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
75646733 CATACATTTT
* *
75646743 ATAC-TATTTATTAATTATAAC
1 ATACATATATATTAAGTATAAC
75646764 ATACATATATATTAAGT-TAAC
1 ATACATATATATTAAGTATAAC
*
75646785 ATATATATATAT
1 ATACATATATAT
75646797 ATGACATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (22 bp):
ATACATATATATTAAGTATAAC
Found at i:75647433 original size:9 final size:9
Alignment explanation
Indices: 75647419--75647487 Score: 79
Period size: 9 Copynumber: 7.7 Consensus size: 9
75647409 TTTTAAACTG
75647419 TTATGTATA
1 TTATGTATA
*
75647428 TTATGTATG
1 TTATGTATA
75647437 TTATGTACTA
1 TTATGTA-TA
75647447 TTATGTATA
1 TTATGTATA
75647456 TT-TGTAT-
1 TTATGTATA
* *
75647463 GTATGTTATG
1 TTATG-TATA
75647473 TTATGTATA
1 TTATGTATA
75647482 TTATGT
1 TTATGT
75647488 GTGTATATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
7 1 0.02
8 7 0.14
9 31 0.61
10 12 0.24
ACGTcount: A:0.26, C:0.01, G:0.16, T:0.57
Consensus pattern (9 bp):
TTATGTATA
Found at i:75647501 original size:35 final size:35
Alignment explanation
Indices: 75647429--75647594 Score: 112
Period size: 35 Copynumber: 4.7 Consensus size: 35
75647419 TTATGTATAT
* * * *
75647429 TATG-TATGTTATGTACTATTATGTATATTTGTATG
1 TATGTTATGTTATGTA-TATTATGTATGTATATTTG
*
75647464 TATGTTATGTTATGTATATTATGTGTGTATATTTG
1 TATGTTATGTTATGTATATTATGTATGTATATTTG
* *
75647499 TATGTT-TTTTATGTGT-TATAT-TACTGT-TATGGTTG
1 TATGTTATGTTATGTATAT-TATGTA-TGTATAT--TTG
* *
75647534 TATATTTTG-TATGTCATATTTAATGTATGTATATTGTG
1 TATGTTATGTTATGT-ATA-TT-ATGTATGTATATT-TG
*
75647572 TATGTTATG-TATGTATGTTATGT
1 TATGTTATGTTATGTATATTATGT
75647595 TTAGCACTGT
Statistics
Matches: 104, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
33 5 0.05
34 14 0.13
35 41 0.39
36 15 0.14
37 4 0.04
38 20 0.19
39 5 0.05
ACGTcount: A:0.23, C:0.02, G:0.19, T:0.57
Consensus pattern (35 bp):
TATGTTATGTTATGTATATTATGTATGTATATTTG
Found at i:75647575 original size:13 final size:13
Alignment explanation
Indices: 75647420--75647589 Score: 107
Period size: 13 Copynumber: 12.4 Consensus size: 13
75647410 TTTAAACTGT
75647420 TATGTATATTATG
1 TATGTATATTATG
*
75647433 TATGT-TATGTACTAT
1 TATGTATAT-TA-T-G
75647448 TATGTATATT-TG
1 TATGTATATTATG
*
75647460 TATGTATGTTATG
1 TATGTATATTATG
75647473 TTATGTATATTATG
1 -TATGTATATTATG
*
75647487 TGTGTATATT-TG
1 TATGTATATTATG
* *
75647499 TATGTTTTTTATG
1 TATGTATATTATG
*
75647512 TGT-TATATTACTG
1 TATGTATATTA-TG
*
75647525 TTATGGTTGTATATTTTG
1 -TA----TGTATATTATG
75647543 TATGTCATATTTAATG
1 TATGT-ATA-TT-ATG
*
75647559 TATGTATATTGTG
1 TATGTATATTATG
75647572 TATGT-TATGTATG
1 TATGTATAT-TATG
75647585 TATGT
1 TATGT
75647590 TATGTTTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
12 29 0.24
13 43 0.35
14 19 0.15
15 11 0.09
16 10 0.08
17 2 0.02
18 3 0.02
19 6 0.05
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.56
Consensus pattern (13 bp):
TATGTATATTATG
Found at i:75649647 original size:28 final size:29
Alignment explanation
Indices: 75649615--75649713 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
75649605 ATAATAAGCC
*
75649615 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
75649643 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
75649671 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
75649700 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75649714 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Done.