Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 259 of 345
Found at i:76557008 original size:17 final size:17
Alignment explanation
Indices: 76556954--76557034 Score: 60
Period size: 17 Copynumber: 4.6 Consensus size: 17
76556944 TTATATCTAC
*
76556954 TATTTATATTATTAAGT
1 TATTTATATTATTAAAT
* *
76556971 TAAATTTCACATT-TTATAT
1 T--ATTT-ATATTATTAAAT
76556990 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
*
76557007 TATTTAGTCA-TATT-GAT
1 TATTTA-T-ATTATTAAAT
76557024 TATTTATATTA
1 TATTTATATTA
76557035 AAATTGAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
15 1 0.02
16 7 0.14
17 24 0.47
18 5 0.10
19 10 0.20
20 4 0.08
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:76583116 original size:23 final size:21
Alignment explanation
Indices: 76583072--76583114 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
76583062 GGTACGGTTG
76583072 ATATTGTTTTATTATGTTAAA
1 ATATTGTTTTATTATGTTAAA
76583093 ATATATGTTTTATTA-GTTAAA
1 ATAT-TGTTTTATTATGTTAAA
76583114 A
1 A
76583115 AAGAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.53
Consensus pattern (21 bp):
ATATTGTTTTATTATGTTAAA
Found at i:76585532 original size:50 final size:50
Alignment explanation
Indices: 76585457--76585657 Score: 323
Period size: 50 Copynumber: 4.0 Consensus size: 50
76585447 GAGCTAAATG
*
76585457 ACCTTGTGTATTCGGCCATGTAGGTAAGTATTTATGCGATGATATATTGA
1 ACCTTGTGTATTCGGCCATGTAGGTAAGTATTTATGTGATGATATATTGA
*
76585507 ACCTTGTGTATTCGACCATGTAGGTAAGTATTTATGTGATGATATATTGA
1 ACCTTGTGTATTCGGCCATGTAGGTAAGTATTTATGTGATGATATATTGA
*
76585557 ACCTTGTGTATTCGGCCATGTAGGTAAGTATTCATGTGATGATATATTGA
1 ACCTTGTGTATTCGGCCATGTAGGTAAGTATTTATGTGATGATATATTGA
* * *
76585607 ACCTTGTATATTTGGCCATAT-GAGTAAGTATTTATGTGATGATATACTTGA
1 ACCTTGTGTATTCGGCCATGTAG-GTAAGTATTTATGTGATGATATA-TTGA
76585658 TCTTGCATAT
Statistics
Matches: 141, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
49 1 0.01
50 136 0.96
51 4 0.03
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.39
Consensus pattern (50 bp):
ACCTTGTGTATTCGGCCATGTAGGTAAGTATTTATGTGATGATATATTGA
Found at i:76586226 original size:2 final size:2
Alignment explanation
Indices: 76586219--76586249 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
76586209 TTCGGCAATG
76586219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76586250 AAAGTATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76586926 original size:26 final size:26
Alignment explanation
Indices: 76586897--76586959 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
76586887 CTTGAATAGC
76586897 AGGCTTTGAGCCGATGATTACTTAGT
1 AGGCTTTGAGCCGATGATTACTTAGT
* * * *
76586923 AGGCTATGGGCCGATGTTTATTTAGT
1 AGGCTTTGAGCCGATGATTACTTAGT
76586949 AGGCTTTGAGC
1 AGGCTTTGAGC
76586960 TGGTGAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (26 bp):
AGGCTTTGAGCCGATGATTACTTAGT
Found at i:76590717 original size:36 final size:36
Alignment explanation
Indices: 76590670--76590741 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
76590660 TTTTTAGGAA
76590670 GTTAAAGTTTAAGATTATACGAGCTTACTAAGCACT
1 GTTAAAGTTTAAGATTATACGAGCTTACTAAGCACT
76590706 GTTAAAGTTTAAGATTATACGAGCTTACTAAGCACT
1 GTTAAAGTTTAAGATTATACGAGCTTACTAAGCACT
76590742 ATTTGCTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (36 bp):
GTTAAAGTTTAAGATTATACGAGCTTACTAAGCACT
Found at i:76594375 original size:27 final size:27
Alignment explanation
Indices: 76594332--76594443 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
76594322 AGGAAGTGTC
* *
76594332 CTGGCGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
76594359 CTGATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
76594386 CTGGTGGCTCTGGCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
76594414 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
76594440 CTGG
1 CTGG
76594444 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
26 5 0.07
27 50 0.71
28 15 0.21
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:76602039 original size:24 final size:23
Alignment explanation
Indices: 76601996--76602040 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
76601986 TACATCAGTG
*
76601996 AAAGATTTGTTGATTAGAAGCGT
1 AAAGATTTCTTGATTAGAAGCGT
76602019 AAAGAGTTTCTTGAGTT-GAAGC
1 AAAGA-TTTCTTGA-TTAGAAGC
76602041 AGGGCAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (23 bp):
AAAGATTTCTTGATTAGAAGCGT
Found at i:76611176 original size:40 final size:40
Alignment explanation
Indices: 76611131--76611298 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76611121 CGGAATACAA
76611131 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
76611171 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
76611211 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
76611251 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
76611291 CCGGATAT
1 CCGGATAT
76611299 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76619229 original size:40 final size:40
Alignment explanation
Indices: 76619184--76619351 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76619174 CGGAATACAA
76619184 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
76619224 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
76619264 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
76619304 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
76619344 CCGGATAT
1 CCGGATAT
76619352 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:76623406 original size:27 final size:28
Alignment explanation
Indices: 76623376--76623432 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
76623366 ATTTTTGATG
76623376 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
76623403 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
76623432 A
1 A
76623433 TTTAACATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:76624370 original size:12 final size:12
Alignment explanation
Indices: 76624353--76624380 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
76624343 ACCTTTGAAA
76624353 GTGTGTCTGCCC
1 GTGTGTCTGCCC
76624365 GTGTGTCTGCCC
1 GTGTGTCTGCCC
76624377 GTGT
1 GTGT
76624381 AAACAAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.29, G:0.36, T:0.36
Consensus pattern (12 bp):
GTGTGTCTGCCC
Found at i:76625291 original size:48 final size:48
Alignment explanation
Indices: 76625198--76625371 Score: 149
Period size: 48 Copynumber: 3.6 Consensus size: 48
76625188 ACATGTCGAG
* *
76625198 GCCAATGCCATGTCCCAGACATGGTCTTACATTAGTGCAC-C-TAACAAC
1 GCCAATGCCATGTCCCAGACATGGTCTTACAAT-G-GCTCTCATAACAAC
* **
76625246 GCCAATGCCATGTCCCGGACATGGTCTTACAATGGCTCTCATAACATT
1 GCCAATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAACAAC
*** * * * * ***
76625294 GTTGATGCCATGTTCCAAACATGGTCTTACAATAGCTCTCATATCGTG
1 GCCAATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAACAAC
*
76625342 GCCGATGCCTAT-T-CCAGACATGGTCTTACA
1 GCCAATGCC-ATGTCCCAGACATGGTCTTACA
76625372 CTAGCACACA
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
46 3 0.03
47 18 0.17
48 82 0.78
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAACAAC
Found at i:76628529 original size:31 final size:31
Alignment explanation
Indices: 76628486--76628550 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
76628476 ACTGTCCAAG
*
76628486 GACTTAAATGAAATGTTTTGAATAGTTCAAT
1 GACTTAAATGAAATCTTTTGAATAGTTCAAT
*
76628517 GACTTAAGTGAAATCTTTTGAATAGTTCAAT
1 GACTTAAATGAAATCTTTTGAATAGTTCAAT
76628548 GAC
1 GAC
76628551 CATTTTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (31 bp):
GACTTAAATGAAATCTTTTGAATAGTTCAAT
Found at i:76635701 original size:31 final size:31
Alignment explanation
Indices: 76635634--76635721 Score: 117
Period size: 31 Copynumber: 2.9 Consensus size: 31
76635624 TTTGGATCAA
* *
76635634 GACTAAACTTGGCCAATTC-AAAAGTATAGG
1 GACTAAACTTGACCAATTCAAAAAGTAAAGG
76635664 GACTAAACTTGACCAATTCAAAAAGTACAAGG
1 GACTAAACTTGACCAATTCAAAAAGTA-AAGG
* *
76635696 G-CTAAAGTTGACCAATTTAAAAAGTA
1 GACTAAACTTGACCAATTCAAAAAGTA
76635722 TAGTGTAACA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
30 18 0.35
31 30 0.58
32 4 0.08
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (31 bp):
GACTAAACTTGACCAATTCAAAAAGTAAAGG
Found at i:76637716 original size:10 final size:10
Alignment explanation
Indices: 76637701--76637747 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
76637691 GAACATGTTG
76637701 AATTTTAATT
1 AATTTTAATT
*
76637711 AATTTTATATCA
1 AATTTTA-AT-T
76637723 AATTTTAATT
1 AATTTTAATT
*
76637733 AATTTTGATT
1 AATTTTAATT
76637743 -ATTTT
1 AATTTT
76637748 CGATAGATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 5 0.16
10 16 0.50
11 4 0.12
12 7 0.22
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:76641929 original size:12 final size:12
Alignment explanation
Indices: 76641912--76641936 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76641902 TAGATAAATA
76641912 TTAGCCATTAAT
1 TTAGCCATTAAT
76641924 TTAGCCATTAAT
1 TTAGCCATTAAT
76641936 T
1 T
76641937 GTGGCCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAGCCATTAAT
Found at i:76642724 original size:49 final size:47
Alignment explanation
Indices: 76642563--76642775 Score: 166
Period size: 49 Copynumber: 4.5 Consensus size: 47
76642553 TGCCAACGTT
* *
76642563 ATGTCCTAGACATGGTCTTACACTGGCTAACAC-ATCAAAGTCGATGCC
1 ATGTCCTAGACA-GGTCTTACACTGGCTATCACTATC-AGGTCGATGCC
* * * * *
76642611 ATGTCCTAGACAGGTCTTACACTGACTTTCACATATCGAGGCCGATACT
1 ATGTCCTAGACAGGTCTTACACTGGCTATCAC-TATC-AGGTCGATGCC
* * * * *
76642660 GTGTCTTAGATAGGTCTTACACTGGCTCTCATCTATTAGTGTCGATGCC
1 ATGTCCTAGACAGGTCTTACACTGGCTATCA-CTATCAG-GTCGATGCC
* * * * *
76642709 ATGTCCCAGACAGGTCTTACACTGAC-A-CAC-AACAAG-CTAATGCC
1 ATGTCCTAGACAGGTCTTACACTGGCTATCACTATCAGGTC-GATGCC
*
76642753 ATATCCTAGACAGGTCTTACACT
1 ATGTCCTAGACAGGTCTTACACT
76642776 AGCTTGTATA
Statistics
Matches: 131, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.01
44 27 0.21
45 2 0.02
46 1 0.01
47 19 0.15
48 14 0.11
49 66 0.50
50 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGTCCTAGACAGGTCTTACACTGGCTATCACTATCAGGTCGATGCC
Found at i:76642843 original size:48 final size:47
Alignment explanation
Indices: 76642761--76642874 Score: 165
Period size: 48 Copynumber: 2.4 Consensus size: 47
76642751 CCATATCCTA
* * *
76642761 GACAGGTCTTACACTAGCTTGTATACCTCGAGGCCGATGCATGTCCC
1 GACATGTCTTACACTGGCTTGTATACCTCAAGGCCGATGCATGTCCC
* *
76642808 ATACATGTCTTACACTGGCTTGTATATCTCAAGGCCGATGCATGTCCC
1 -GACATGTCTTACACTGGCTTGTATACCTCAAGGCCGATGCATGTCCC
*
76642856 GACATATCTTACACTGGCT
1 GACATGTCTTACACTGGCT
76642875 CTCATAATGT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
47 17 0.29
48 42 0.71
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GACATGTCTTACACTGGCTTGTATACCTCAAGGCCGATGCATGTCCC
Found at i:76648094 original size:2 final size:2
Alignment explanation
Indices: 76648087--76648111 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76648077 TAGCTTCGGC
76648087 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76648112 GTATGCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76648095 original size:44 final size:42
Alignment explanation
Indices: 76648012--76648093 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
76648002 TTAATTATGG
* *
76648012 GCACTTAGTGTGCGAAATCGGGATAGCTTTGGATATATATTT
1 GCACTTAGTGTGCGAAATCGAGATAGCTTCGGATATATATTT
* *
76648054 GCACTTAGTGTGTGAGAA-CGAGATAGCTTCGGCTATATAT
1 GCACTTAGTGTGCGA-AATCGAGATAGCTTCGGATATATAT
76648094 ATATATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (42 bp):
GCACTTAGTGTGCGAAATCGAGATAGCTTCGGATATATATTT
Found at i:76658653 original size:124 final size:124
Alignment explanation
Indices: 76658431--76658656 Score: 319
Period size: 124 Copynumber: 1.8 Consensus size: 124
76658421 GAATTATGTG
* ** * * * * *
76658431 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGACTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
76658496 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
76658555 AAATGAAATATGAATGACTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGACTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
76658620 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATATT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATATT
76658657 CGGGTTAAGA
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGACTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:76658778 original size:40 final size:40
Alignment explanation
Indices: 76658650--76658780 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 40
76658640 TTGCTGGAAA
* * *
76658650 TTATATTCGGGTTAAGACCCGAAGGCAAATT-GTGCTAG-CGG
1 TTATATCCGGGCTAAGACCCGAAGGC--ATTCGTGCGAGTC-G
* *
76658691 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
* * *
76658731 TTCTATCCGGGCTAGGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCG
76658771 TTATATCCGG
1 TTATATCCGG
76658781 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 49 0.64
41 23 0.30
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
Found at i:76663823 original size:23 final size:23
Alignment explanation
Indices: 76663797--76663841 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76663787 CCAGTACACC
*
76663797 AGTATCGCAGC-GAGGCTGCTAAA
1 AGTAACGCAGCAGA-GCTGCTAAA
*
76663820 AGTAACGTAGCAGAGCTGCTAA
1 AGTAACGCAGCAGAGCTGCTAA
76663842 TAATAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (23 bp):
AGTAACGCAGCAGAGCTGCTAAA
Found at i:76666841 original size:47 final size:47
Alignment explanation
Indices: 76666790--76666886 Score: 149
Period size: 47 Copynumber: 2.1 Consensus size: 47
76666780 TTAGGATTTT
* *
76666790 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
76666837 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76666884 ATG
1 ATG
76666887 CGAAATGTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:76666926 original size:46 final size:46
Alignment explanation
Indices: 76666860--76666949 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
76666850 GAACATGTAT
* * *
76666860 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
76666906 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
76666950 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:76666958 original size:2 final size:2
Alignment explanation
Indices: 76666951--76666977 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76666941 GTATGAGATG
76666951 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76666978 TGTGGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76670689 original size:29 final size:29
Alignment explanation
Indices: 76670656--76670787 Score: 219
Period size: 29 Copynumber: 4.6 Consensus size: 29
76670646 CCTTCGAGCT
** * *
76670656 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
76670685 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76670714 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76670743 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76670772 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
76670788 ATCTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:76670690 original size:58 final size:58
Alignment explanation
Indices: 76670627--76670787 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
76670617 AATTTAAGCC
* * * * * *
76670627 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
76670685 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
76670743 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
76670788 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:76670718 original size:87 final size:87
Alignment explanation
Indices: 76670627--76670787 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
76670617 AATTTAAGCC
* * * * * *
76670627 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
76670692 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
76670714 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
76670779 TTAGTGCCA
66 TTAGTGCCA
76670788 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:76682346 original size:40 final size:40
Alignment explanation
Indices: 76682280--76682446 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76682270 AAATTGAATG
* * *
76682280 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76682319 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76682359 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76682399 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76682439 ATATCCGG
1 ATATCCGG
76682447 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76701330 original size:27 final size:27
Alignment explanation
Indices: 76701300--76701355 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
76701290 GAGACTCTGA
76701300 GATTGAATTGGTCATGAGTGTTGGAAG
1 GATTGAATTGGTCATGAGTGTTGGAAG
*
76701327 GATTGAATTGGTCATGAGTGTTTGAAG
1 GATTGAATTGGTCATGAGTGTTGGAAG
76701354 GA
1 GA
76701356 CATTTGAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.34
Consensus pattern (27 bp):
GATTGAATTGGTCATGAGTGTTGGAAG
Found at i:76702809 original size:27 final size:27
Alignment explanation
Indices: 76702774--76702986 Score: 189
Period size: 27 Copynumber: 7.9 Consensus size: 27
76702764 TGAGACCCTG
76702774 GTTTGTAAAATTA-TCGAAATACCCCCA
1 GTTTGTAAAATTACT-GAAATACCCCCA
* *
76702801 GTTTTTAAAATTACTGAAATACCCCTA
1 GTTTGTAAAATTACTGAAATACCCCCA
* * *
76702828 GTTTGTAAAATTACTAAAATACTCTCA
1 GTTTGTAAAATTACTGAAATACCCCCA
* * *
76702855 ATTTGTAAAATTACTGAAATACCCTCG
1 GTTTGTAAAATTACTGAAATACCCCCA
* * * *
76702882 GTTTGTAAAATTA-TCAAAATGCACCTA
1 GTTTGTAAAATTACT-GAAATACCCCCA
** **
76702909 GTTTGTAAAATTACCAAAATACCCTTA
1 GTTTGTAAAATTACTGAAATACCCCCA
* * *
76702936 ATTTATAAAATTACTGAAATA-CCCCT
1 GTTTGTAAAATTACTGAAATACCCCCA
* *
76702962 GTAGTGTAAAATTACCGAAATACCC
1 GT-TTGTAAAATTACTGAAATACCC
76702987 TTGTAGGGCA
Statistics
Matches: 148, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
26 4 0.03
27 141 0.95
28 3 0.02
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
GTTTGTAAAATTACTGAAATACCCCCA
Found at i:76702910 original size:81 final size:81
Alignment explanation
Indices: 76702775--76702960 Score: 250
Period size: 81 Copynumber: 2.3 Consensus size: 81
76702765 GAGACCCTGG
* * *
76702775 TTTGTAAAATTA-TCGAAATACCCCCAGTTTTTAAAATTACTGAAATACCCCTAGTTTGTAAAAT
1 TTTGTAAAATTACT-GAAATACCCCCAGTTTGTAAAATTACTAAAATACACCTAGTTTGTAAAAT
* *
76702839 TACTAAAATACTCTCAA
65 TACCAAAATACCCTCAA
* * *
76702856 TTTGTAAAATTACTGAAATACCCTCGGTTTGTAAAATTA-TCAAAATGCACCTAGTTTGTAAAAT
1 TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTACT-AAAATACACCTAGTTTGTAAAAT
*
76702920 TACCAAAATACCCTTAA
65 TACCAAAATACCCTCAA
*
76702937 TTTATAAAATTACTGAAATACCCC
1 TTTGTAAAATTACTGAAATACCCC
76702961 TGTAGTGTAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 90 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (81 bp):
TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTACTAAAATACACCTAGTTTGTAAAATT
ACCAAAATACCCTCAA
Found at i:76702999 original size:27 final size:27
Alignment explanation
Indices: 76702942--76703000 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
76702932 CTTAATTTAT
* * *
76702942 AAAATTACTGAAATACCCCTGTAGTGT
1 AAAATTACCGAAATACCCCTGTAGGGC
*
76702969 AAAATTACCGAAATACCCTTGTAGGGC
1 AAAATTACCGAAATACCCCTGTAGGGC
76702996 AAAAT
1 AAAAT
76703001 GATTGTTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGC
Found at i:76708286 original size:21 final size:21
Alignment explanation
Indices: 76708260--76708310 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
76708250 CTACAAGGGT
76708260 CACACGCCCGTGTGGCTC-TCC
1 CACACGCCCGTGTGGC-CATCC
*
76708281 CACACGCCCGTGTGGCCATTC
1 CACACGCCCGTGTGGCCATCC
76708302 CACACGCCC
1 CACACGCCC
76708311 ATGTACCCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.14, C:0.49, G:0.22, T:0.16
Consensus pattern (21 bp):
CACACGCCCGTGTGGCCATCC
Found at i:76714531 original size:29 final size:29
Alignment explanation
Indices: 76714470--76714568 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
76714460 ACAGTAAGTC
*
76714470 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
76714498 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76714527 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76714555 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76714569 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:76717309 original size:38 final size:38
Alignment explanation
Indices: 76717267--76717348 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
76717257 GGCTTAAAGA
76717267 CCCGCAGGCTAT-ATGCTAGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTAGAATTATATCCGGGTTAAAT
* * *
76717305 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
76717343 CCCGCA
1 CCCGCA
76717349 AGCCTAGTGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.03
38 39 0.98
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
Found at i:76717359 original size:38 final size:38
Alignment explanation
Indices: 76717287--76717371 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
76717277 ATATGCTAGA
* * *
76717287 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGT
76717325 ATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGT
76717363 ATTTATATC
1 A-TTATATC
76717372 TAAGTTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
38 36 0.84
39 7 0.16
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGT
Found at i:76717400 original size:41 final size:38
Alignment explanation
Indices: 76717287--76717408 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 38
76717277 ATATGCTAGA
**
76717287 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
** * * *
76717325 ATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGT
1 ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
* *
76717363 ATTTATATCTAAGTTTAAAGTCCCGTAGGCTTCGTGCTGGT
1 A-TTATATC-AAGGTTAAA-TCCCGCAGGCTTCGTGCTGGT
*
76717404 GTTAT
1 ATTAT
76717409 GTTCGGGTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
38 36 0.51
39 7 0.10
40 10 0.14
41 17 0.24
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.34
Consensus pattern (38 bp):
ATTATATCAAGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:76718494 original size:15 final size:16
Alignment explanation
Indices: 76718474--76718507 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76718464 ATTAATGAGC
76718474 ATTCTTTT-TTCCATT
1 ATTCTTTTATTCCATT
*
76718489 ATTCTTTTATTTCATT
1 ATTCTTTTATTCCATT
76718505 ATT
1 ATT
76718508 TATCTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTCTTTTATTCCATT
Found at i:76718619 original size:32 final size:32
Alignment explanation
Indices: 76718583--76718647 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
76718573 TATATCTTAC
76718583 ATGTTTTGGTTATAGAACGAATTTATTGATTA
1 ATGTTTTGGTTATAGAACGAATTTATTGATTA
76718615 ATGTTTTGGTTATAGAACGAATTTATTGATTA
1 ATGTTTTGGTTATAGAACGAATTTATTGATTA
76718647 A
1 A
76718648 GTAATTATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.46
Consensus pattern (32 bp):
ATGTTTTGGTTATAGAACGAATTTATTGATTA
Found at i:76722240 original size:30 final size:30
Alignment explanation
Indices: 76722185--76722241 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
76722175 AAGGCCATGG
* * *
76722185 CACACGGGCGTGTGGTTTACTCGTGTGTCA
1 CACACGGGCGTGTGGATCACCCGTGTGTCA
*
76722215 CACATGGGCGTGTGGATCACCCGTGTG
1 CACACGGGCGTGTGGATCACCCGTGTG
76722242 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.25, G:0.35, T:0.26
Consensus pattern (30 bp):
CACACGGGCGTGTGGATCACCCGTGTGTCA
Found at i:76725683 original size:3 final size:3
Alignment explanation
Indices: 76725675--76725711 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
76725665 AATAAAGAAC
*
76725675 TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
76725712 TTAATTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:76725949 original size:4 final size:4
Alignment explanation
Indices: 76725940--76725983 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
76725930 GGGAGAAAGT
* *
76725940 GAAA GAAA G-AG GAAA GAAA GAAA GAAA -AGA GAAA GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
76725984 GAAGGGAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
3 4 0.12
4 30 0.88
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:76725960 original size:15 final size:15
Alignment explanation
Indices: 76725935--76726009 Score: 73
Period size: 15 Copynumber: 4.9 Consensus size: 15
76725925 GAGAGGGGAG
*
76725935 AAAGTGAAAGAAAGA
1 AAAGAGAAAGAAAGA
*
76725950 GGAA-AGAAAGAAAGA
1 -AAAGAGAAAGAAAGA
76725965 AAAGAGAAAGAAAG-
1 AAAGAGAAAGAAAGA
*
76725979 AAAGAGAAGGGAAAGA
1 AAAGAGAA-AGAAAGA
*
76725995 AGAAGAGAATGAAAG
1 A-AAGAGAAAGAAAG
76726010 TAAGGAGAGG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
14 10 0.20
15 25 0.50
16 8 0.16
17 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (15 bp):
AAAGAGAAAGAAAGA
Found at i:76725964 original size:19 final size:19
Alignment explanation
Indices: 76725940--76725995 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
76725930 GGGAGAAAGT
76725940 GAAAGAAAGAGGAAAGAAA
1 GAAAGAAAGAGGAAAGAAA
76725959 GAAAGAAA-AGAGAAAGAAA
1 GAAAGAAAGAG-GAAAGAAA
76725978 GAAAGAGAAG-GGAAAGAA
1 GAAAGA-AAGAGGAAAGAA
76725996 GAAGAGAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.06
19 29 0.85
20 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
GAAAGAAAGAGGAAAGAAA
Found at i:76726333 original size:12 final size:12
Alignment explanation
Indices: 76726301--76726326 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76726291 TCGCACGACC
76726301 GTGTGCTTCGTT
1 GTGTGCTTCGTT
76726313 GTGTGCTTCGTT
1 GTGTGCTTCGTT
76726325 GT
1 GT
76726327 TCGCTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.35, T:0.50
Consensus pattern (12 bp):
GTGTGCTTCGTT
Found at i:76729316 original size:14 final size:15
Alignment explanation
Indices: 76729299--76729328 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76729289 CCAGAAGCAA
76729299 TTAAAAA-GAAAAAT
1 TTAAAAACGAAAAAT
76729313 TTAAAAACGAAAAAT
1 TTAAAAACGAAAAAT
76729328 T
1 T
76729329 AAACTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (15 bp):
TTAAAAACGAAAAAT
Found at i:76729330 original size:14 final size:13
Alignment explanation
Indices: 76729297--76729331 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
76729287 TGCCAGAAGC
76729297 AATTAAAAAGAAA
1 AATTAAAAAGAAA
76729310 AATTTAAAAACGAAA
1 AA-TTAAAAA-GAAA
76729325 AATTAAA
1 AATTAAA
76729332 CTTAAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 2 0.10
14 12 0.60
15 6 0.30
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (13 bp):
AATTAAAAAGAAA
Found at i:76734677 original size:39 final size:39
Alignment explanation
Indices: 76734525--76734667 Score: 214
Period size: 39 Copynumber: 3.7 Consensus size: 39
76734515 CAGTGATGTT
* *
76734525 TATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
76734564 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
76734603 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
76734642 TAACCGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTA
76734668 CATGATGGAA
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:76734677 original size:78 final size:78
Alignment explanation
Indices: 76734525--76734687 Score: 209
Period size: 78 Copynumber: 2.1 Consensus size: 78
76734515 CAGTGATGTT
* * * * * *
76734525 TATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
** * *
76734590 TGTGCTGGAATTA
66 CATGATGGAAATA
* *
76734603 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTATAACCGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
76734668 CATGATGGAAATA
66 CATGATGGAAATA
*
76734681 TGTCCGG
1 TATCCGG
76734688 GCTAAAGTCC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
CATGATGGAAATA
Found at i:76738210 original size:14 final size:14
Alignment explanation
Indices: 76738193--76738224 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
76738183 AAAGAAGAGG
76738193 AGAAGAAGAAAATA
1 AGAAGAAGAAAATA
*
76738207 AGAAGAAGAAGATA
1 AGAAGAAGAAAATA
76738221 AGAA
1 AGAA
76738225 ATGGACATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (14 bp):
AGAAGAAGAAAATA
Found at i:76740153 original size:24 final size:25
Alignment explanation
Indices: 76740121--76740171 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
76740111 CTATTGTAAA
76740121 TGTGTATTATATGCAATGATTA-TT
1 TGTGTATTATATGCAATGATTAGTT
*
76740145 TGTGTATTATATGTAATGATTAGTT
1 TGTGTATTATATGCAATGATTAGTT
76740170 TG
1 TG
76740172 GACTTCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (25 bp):
TGTGTATTATATGCAATGATTAGTT
Found at i:76745576 original size:41 final size:41
Alignment explanation
Indices: 76745531--76745616 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
76745521 CGTTTGAATG
* * *
76745531 AAAAATGCCGCCAAAGAATAAGCATTAGCGGCGCTTTTTAA
1 AAAAATGCCACCAAAGAACAAGCATTAGCGGCACTTTTTAA
* * *
76745572 AAAAATGCCACTAAAGAACGAGCATTAGCGGCATTTTTTAA
1 AAAAATGCCACCAAAGAACAAGCATTAGCGGCACTTTTTAA
76745613 AAAA
1 AAAA
76745617 CGCCACTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAAATGCCACCAAAGAACAAGCATTAGCGGCACTTTTTAA
Found at i:76745609 original size:40 final size:41
Alignment explanation
Indices: 76745531--76745663 Score: 119
Period size: 40 Copynumber: 3.3 Consensus size: 41
76745521 CGTTTGAATG
* * * *
76745531 AAAAATGCCGCCAAAGAATAAGCATTAGCGGCGCTTTTTAA
1 AAAAATGCCACTAAAGAACAAGCATTAGCGGCGATTTTTAA
* *
76745572 AAAAATGCCACTAAAGAACGAGCATTAGCGGC-ATTTTTTA
1 AAAAATGCCACTAAAGAACAAGCATTAGCGGCGATTTTTAA
* ** * * *
76745612 AAAAACGCCACTATAAGTTC-ACCTTTAGCGGCG-CTTTTAA
1 AAAAATGCCACTA-AAGAACAAGCATTAGCGGCGATTTTTAA
*
76745652 AAAAACGCCACT
1 AAAAATGCCACT
76745664 TGTAACGCCC
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
40 45 0.58
41 32 0.42
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (41 bp):
AAAAATGCCACTAAAGAACAAGCATTAGCGGCGATTTTTAA
Found at i:76745656 original size:41 final size:41
Alignment explanation
Indices: 76745553--76745663 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 41
76745543 AAAGAATAAG
* *
76745553 CATTAGCGGCGCTTTTTAAAAAAATGCCACTAAAGAACGAG
1 CATTAGCGGCGCTTTTTAAAAAAACGCCACTAAAGAACGAC
* * **
76745594 CATTAGCGGC-ATTTTTTAAAAAACGCCACTATAAGTTC-AC
1 CATTAGCGGCGCTTTTTAAAAAAACGCCACTA-AAGAACGAC
*
76745634 CTTTAGCGGCGC-TTTTAAAAAAACGCCACT
1 CATTAGCGGCGCTTTTTAAAAAAACGCCACT
76745664 TGTAACGCCC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 45 0.76
41 14 0.24
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (41 bp):
CATTAGCGGCGCTTTTTAAAAAAACGCCACTAAAGAACGAC
Found at i:76747217 original size:8 final size:8
Alignment explanation
Indices: 76747194--76747248 Score: 56
Period size: 8 Copynumber: 6.9 Consensus size: 8
76747184 ATCGGCACAA
*
76747194 GCCGAAAA
1 GCCGAAAT
*
76747202 GCCAAAAT
1 GCCGAAAT
*
76747210 GTCGAAAT
1 GCCGAAAT
*
76747218 GCCGAAAA
1 GCCGAAAT
76747226 GCCGAAAT
1 GCCGAAAT
**
76747234 GTTGAAAT
1 GCCGAAAT
76747242 GCCGAAA
1 GCCGAAA
76747249 ATCCGGTATT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:76747262 original size:24 final size:24
Alignment explanation
Indices: 76747194--76747249 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
76747184 ATCGGCACAA
* *
76747194 GCCGAAAAGCCAAAATGTCGAAAT
1 GCCGAAAAGCCGAAATGTTGAAAT
76747218 GCCGAAAAGCCGAAATGTTGAAAT
1 GCCGAAAAGCCGAAATGTTGAAAT
76747242 GCCGAAAA
1 GCCGAAAA
76747250 TCCGGTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (24 bp):
GCCGAAAAGCCGAAATGTTGAAAT
Found at i:76747665 original size:27 final size:27
Alignment explanation
Indices: 76747625--76747763 Score: 156
Period size: 27 Copynumber: 5.1 Consensus size: 27
76747615 AGGAAGCGTC
*
76747625 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
76747652 CTGGTGGCTCTGCCACATATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
76747679 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAAATATCTGA-T
* * *
76747706 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
76747734 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
76747760 CTGG
1 CTGG
76747764 CAGCCATGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.06
27 78 0.79
28 14 0.14
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:76747713 original size:54 final size:55
Alignment explanation
Indices: 76747625--76747761 Score: 174
Period size: 54 Copynumber: 2.5 Consensus size: 55
76747615 AGGAAGCGTC
* * *
76747625 CTGGTGGCTATGCCACAAATATCTGA-TCTGGTGGCTCTGCCAC-ATATATCTG-AT
1 CTGGTGGCTCTGCCACATATATCT-ATTCTAGTGGCTCTGCCACGAT-TATCTGTAT
76747679 CTGGTGGCTCTGCCACATATATCTATTCTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTATTCTAGTGGCTCTGCCACGATTATCTGTAT
* * *
76747734 CTGGTGACTCTGTCACAT-TATCTGTTCT
1 CTGGTGGCTCTGCCACATATATCTATTCT
76747762 GGCAGCCATG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
53 1 0.01
54 53 0.72
55 20 0.27
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (55 bp):
CTGGTGGCTCTGCCACATATATCTATTCTAGTGGCTCTGCCACGATTATCTGTAT
Found at i:76749381 original size:22 final size:22
Alignment explanation
Indices: 76749356--76749401 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
76749346 GAGTTACTAT
* *
76749356 TTTAAAGTTTATGGATTATGGG
1 TTTAAAGATTATGGATTAAGGG
* *
76749378 TTTAAGGATTATGGTTTAAGGG
1 TTTAAAGATTATGGATTAAGGG
76749400 TT
1 TT
76749402 GGGGTTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (22 bp):
TTTAAAGATTATGGATTAAGGG
Found at i:76749386 original size:15 final size:15
Alignment explanation
Indices: 76749362--76749422 Score: 63
Period size: 14 Copynumber: 4.2 Consensus size: 15
76749352 CTATTTTAAA
* *
76749362 GTTTATGGATTATGG
1 GTTTAAGGATTAGGG
*
76749377 GTTTAAGGATTA-TG
1 GTTTAAGGATTAGGG
*
76749391 GTTTAAGGGTT-GGG
1 GTTTAAGGATTAGGG
*
76749405 GTTTAAGGCTTAGGG
1 GTTTAAGGATTAGGG
76749420 GTT
1 GTT
76749423 AGGGGTTAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
14 22 0.56
15 17 0.44
ACGTcount: A:0.20, C:0.02, G:0.38, T:0.41
Consensus pattern (15 bp):
GTTTAAGGATTAGGG
Found at i:76749428 original size:28 final size:28
Alignment explanation
Indices: 76749375--76749429 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
76749365 TATGGATTAT
* *
76749375 GGGTTTAAGGATTATGGTTTAAGGGTTG
1 GGGTTTAAGGATTAGGGGTTAAGGGTTG
* *
76749403 GGGTTTAAGGCTTAGGGGTTAGGGGTT
1 GGGTTTAAGGATTAGGGGTTAAGGGTT
76749430 AAGTGTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.18, C:0.02, G:0.44, T:0.36
Consensus pattern (28 bp):
GGGTTTAAGGATTAGGGGTTAAGGGTTG
Found at i:76753258 original size:44 final size:44
Alignment explanation
Indices: 76753209--76753297 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
76753199 GTTATCGCTT
76753209 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
76753253 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
76753297 T
1 T
76753298 GTTGCTATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (44 bp):
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Found at i:76755064 original size:19 final size:19
Alignment explanation
Indices: 76755029--76755085 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
76755019 ATTTAATCTA
76755029 ATTTTTATTATT--TATTTT
1 ATTTTTATT-TTAATATTTT
76755047 ATTTTTGATTTTAA-ATTTTT
1 ATTTTT-ATTTTAATA-TTTT
76755067 ATTTTTATTTTAATATTTT
1 ATTTTTATTTTAATATTTT
76755086 TAGTTAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
18 8 0.24
19 15 0.44
20 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
ATTTTTATTTTAATATTTT
Found at i:76755068 original size:20 final size:20
Alignment explanation
Indices: 76755043--76755087 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
76755033 TTATTATTTA
76755043 TTTTATTTTTGATTTTAA-AT
1 TTTTATTTTT-ATTTTAATAT
76755063 TTTTATTTTTATTTTAATAT
1 TTTTATTTTTATTTTAATAT
76755083 TTTTA
1 TTTTA
76755088 GTTAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTATTTTTATTTTAATAT
Found at i:76755083 original size:8 final size:6
Alignment explanation
Indices: 76755029--76755087 Score: 57
Period size: 6 Copynumber: 9.2 Consensus size: 6
76755019 ATTTAATCTA
*
76755029 ATTTTT ATTATTT A-TTTT ATTTTT GATTTTAA ATTTTT ATTTTT ATTTTAAT
1 ATTTTT ATT-TTT ATTTTT ATTTTT -ATTTT-T ATTTTT ATTTTT ATTTT--T
76755081 ATTTTT A
1 ATTTTT A
76755088 GTTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
5 4 0.09
6 21 0.47
7 14 0.31
8 6 0.13
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:76755099 original size:32 final size:32
Alignment explanation
Indices: 76755031--76755099 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
76755021 TTAATCTAAT
* *
76755031 TTTTATTATTTATTTTATTTTTGATTTTAAAT
1 TTTTATTATTTATTTTATTTTTGATGTTAAAA
*
76755063 TTTTATT-TTTATTTTAATATTTTTA-GTTAAAA
1 TTTTATTATTTATTTT-AT-TTTTGATGTTAAAA
76755095 TTTTA
1 TTTTA
76755100 ATAGAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 8 0.25
32 19 0.59
33 5 0.16
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (32 bp):
TTTTATTATTTATTTTATTTTTGATGTTAAAA
Found at i:76755359 original size:42 final size:43
Alignment explanation
Indices: 76755248--76755427 Score: 227
Period size: 43 Copynumber: 4.2 Consensus size: 43
76755238 AAATTTCGTT
* * * *
76755248 ACCTTTAGCGGCGTTTTTGGGTAGAGCGCCGCTAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATG
* * *
76755291 ACATTTAGCGGCGTTTGTGTGAAAAGCACGGCTAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATG
*
76755334 ACCTTTAG-GGCGTTTGTGGGAAAAGCATCGCTAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATG
* * ** *
76755376 ACTTTTAGCGGCGTTTGTGAGAAAAGTGCCACTAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATG
*
76755419 ATCTTTAGC
1 ACCTTTAGC
76755428 AACGTTTTTA
Statistics
Matches: 117, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 38 0.32
43 79 0.68
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATG
Found at i:76755400 original size:85 final size:86
Alignment explanation
Indices: 76755248--76755427 Score: 245
Period size: 85 Copynumber: 2.1 Consensus size: 86
76755238 AAATTTCGTT
* * * * *
76755248 ACCTTTAGCGGCGTTTTTGGGTAGAGCGCCGCTAAAGGTCATGACATTTAGCGGCGTTTGTGTGA
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATGACATTTAGCGGCGTTTGTGAGA
**
76755313 AAAGCACGGCTAAAGGTCATG
66 AAAGCACCACTAAAGGTCATG
* *
76755334 ACCTTTAG-GGCGTTTGTGGGAAAAGCATCGCTAAAGGTCATGACTTTTAGCGGCGTTTGTGAGA
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATGACATTTAGCGGCGTTTGTGAGA
**
76755398 AAAGTGCCACTAAAGGTCATG
66 AAAGCACCACTAAAGGTCATG
*
76755419 ATCTTTAGC
1 ACCTTTAGC
76755428 AACGTTTTTA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 73 0.90
86 8 0.10
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (86 bp):
ACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCATGACATTTAGCGGCGTTTGTGAGA
AAAGCACCACTAAAGGTCATG
Found at i:76762366 original size:40 final size:39
Alignment explanation
Indices: 76762198--76762368 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
76762188 AGAAATTGAA
* *
76762198 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
76762238 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
76762278 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
76762318 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
76762358 TGATATCCGGG
1 TGATATCCGGG
76762369 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:76770287 original size:39 final size:40
Alignment explanation
Indices: 76770229--76770329 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
76770219 AAATTGAATG
* *
76770229 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
76770268 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
76770308 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
76770330 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:76770322 original size:40 final size:40
Alignment explanation
Indices: 76770229--76770379 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
76770219 AAATTGAATG
* * * * *
76770229 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
76770268 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
76770308 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
76770348 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
76770380 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:76770394 original size:40 final size:38
Alignment explanation
Indices: 76770225--76770396 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
76770215 TGAGAAATTG
* *
76770225 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
76770264 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
76770301 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
76770341 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
76770381 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
76770397 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:76773085 original size:14 final size:14
Alignment explanation
Indices: 76773066--76773093 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76773056 ACCTATGTAA
76773066 TCATTTATACCATC
1 TCATTTATACCATC
76773080 TCATTTATACCATC
1 TCATTTATACCATC
76773094 ACATAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (14 bp):
TCATTTATACCATC
Found at i:76775434 original size:39 final size:40
Alignment explanation
Indices: 76775376--76775476 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
76775366 AAATTGAATG
* *
76775376 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
76775415 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
76775455 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
76775477 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:76775469 original size:40 final size:40
Alignment explanation
Indices: 76775376--76775552 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
76775366 AAATTGAATG
* * * * *
76775376 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
76775415 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
76775455 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
76775495 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
76775535 ATATCCGGG-TAAGTCCCG
1 ATATCCGGGCTAAGACCCG
76775553 TTGGCCTTGG
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 40 0.34
40 75 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:76783434 original size:40 final size:39
Alignment explanation
Indices: 76783266--76783436 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
76783256 AGAAATTGAA
* *
76783266 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
76783306 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
76783346 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
76783386 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
76783426 TGATATCCGGG
1 TGATATCCGGG
76783437 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:76795424 original size:27 final size:27
Alignment explanation
Indices: 76795382--76795549 Score: 205
Period size: 27 Copynumber: 6.2 Consensus size: 27
76795372 GGGACGAAAT
76795382 AATGACCGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
*
76795409 AATGACCGAAAGACCCCTATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
* *
76795436 AATGACCAAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
**
76795463 AATGATTGAAATA-CCCTCATAGGGTAA
1 AATGACCGAAATACCCCT-ATAGGGTAA
76795490 AATGACCGAAATAACCCC-ATAGGGTAA
1 AATGACCGAAAT-ACCCCTATAGGGTAA
* ** * **
76795517 AATGACTGTTATACCCCTGTAATGTAA
1 AATGACCGAAATACCCCTATAGGGTAA
76795544 AATGAC
1 AATGAC
76795550 TATTTTACCC
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.07
27 109 0.90
28 1 0.01
29 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (27 bp):
AATGACCGAAATACCCCTATAGGGTAA
Found at i:76795550 original size:27 final size:27
Alignment explanation
Indices: 76795458--76795823 Score: 256
Period size: 27 Copynumber: 13.6 Consensus size: 27
76795448 ACCCCCATAG
* **
76795458 GGTAAAATGATTGAAATACCCTCAT-A
1 GGTAAAATGACTGTTATACCCTCATGA
* **
76795484 GGGTAAAATGACCGAAATAACCC-CAT-A
1 -GGTAAAATGACTGTTAT-ACCCTCATGA
76795511 GGGTAAAATGACTGTTATACCC-C-TGTAA
1 -GGTAAAATGACTGTTATACCCTCATG--A
* * *
76795539 TGTAAAATGACTATTTTACCCTCATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* *
76795566 GGTAAAATGACTGTTTTGCCCTCATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* *
76795593 GGTAAAATGACTGTTTTGCCCTCATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* * *
76795620 GGTAAAATGACTGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* * * *
76795647 GGTAAAATGACTATTTTGCCCTTATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* * *
76795674 GGCAAAATGACTGTTTTGCCCTCATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* * * *
76795701 GATAAAATGACTGTTTTGCCTTCATGA
1 GGTAAAATGACTGTTATACCCTCATGA
* * * * *
76795728 GGTAAAATGACTGTTTTGCCTTTATGT
1 GGTAAAATGACTGTTATACCCTCATGA
* * * * * *
76795755 GGTAAAATGATTATTTTACACTTATGT
1 GGTAAAATGACTGTTATACCCTCATGA
* * * * * *
76795782 GGTACAATGACTATTTTGCCTTCATAA
1 GGTAAAATGACTGTTATACCCTCATGA
76795809 GGTAAAATGACTGTT
1 GGTAAAATGACTGTT
76795824 GATGGTCGCT
Statistics
Matches: 296, Mismatches: 37, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
25 1 0.00
26 5 0.02
27 282 0.95
28 6 0.02
29 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAAAATGACTGTTATACCCTCATGA
Found at i:76795570 original size:54 final size:54
Alignment explanation
Indices: 76795540--76795820 Score: 382
Period size: 54 Copynumber: 5.2 Consensus size: 54
76795530 CCCCTGTAAT
*
76795540 GTAAAATGACTATTTTACCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
1 GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
* *
76795594 GTAAAATGACTGTTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATGAG
1 GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
* *
76795648 GTAAAATGACTATTTTGCCCTTATGAGGCAAAATGACTGTTTTGCCCTCATGAG
1 GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
* * * * * *
76795702 ATAAAATGACTGTTTTGCCTTCATGAGGTAAAATGACTGTTTTGCCTTTATGTG
1 GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
* * * * * * * * *
76795756 GTAAAATGATTATTTTACACTTATGTGGTACAATGACTATTTTGCCTTCATAAG
1 GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
76795810 GTAAAATGACT
1 GTAAAATGACT
76795821 GTTGATGGTC
Statistics
Matches: 198, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 198 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAG
Found at i:76795597 original size:81 final size:81
Alignment explanation
Indices: 76795512--76795823 Score: 371
Period size: 81 Copynumber: 3.9 Consensus size: 81
76795502 AACCCCATAG
* *
76795512 GGTAAAATGACTGTTATACCC-C-TGTAATGTAAAATGACTATTTTACCCTCATGAGGTAAAATG
1 GGTAAAATGACTGTTTTACCCTCATG--ATGTAAAATGACTATTTTGCCCTCATGAGGTAAAATG
*
76795575 ACTGTTTTGCCCTCATGA
64 ACTGTTTTGCCCTTATGA
* * * *
76795593 GGTAAAATGACTGTTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGAC
1 GGTAAAATGACTGTTTTACCCTCATGATGTAAAATGACTATTTTGCCCTCATGAGGTAAAATGAC
*
76795658 TATTTTGCCCTTATGA
66 TGTTTTGCCCTTATGA
* * * *
76795674 GGCAAAATGACTGTTTTGCCCTCATGA-GATAAAATGACTGTTTTGCCTTCATGAGGTAAAATGA
1 GGTAAAATGACTGTTTTACCCTCATGATG-TAAAATGACTATTTTGCCCTCATGAGGTAAAATGA
* *
76795738 CTGTTTTGCCTTTATGT
65 CTGTTTTGCCCTTATGA
* * * * * * *
76795755 GGTAAAATGATTATTTTACACTTATG-TGGTACAATGACTATTTTGCCTTCATAAGGTAAAATGA
1 GGTAAAATGACTGTTTTACCCTCATGAT-GTAAAATGACTATTTTGCCCTCATGAGGTAAAATGA
76795819 CTGTT
65 CTGTT
76795824 GATGGTCGCT
Statistics
Matches: 203, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.00
81 198 0.98
82 2 0.01
83 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAAAATGACTGTTTTACCCTCATGATGTAAAATGACTATTTTGCCCTCATGAGGTAAAATGAC
TGTTTTGCCCTTATGA
Found at i:76797538 original size:18 final size:18
Alignment explanation
Indices: 76797515--76797559 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
76797505 GACTTGTATT
76797515 CTGTTACTGCACTGATTA
1 CTGTTACTGCACTGATTA
* * *
76797533 CTGTTATTGCATTGTTTA
1 CTGTTACTGCACTGATTA
*
76797551 TTGTTACTG
1 CTGTTACTG
76797560 TATTGGGCCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.49
Consensus pattern (18 bp):
CTGTTACTGCACTGATTA
Found at i:76799140 original size:28 final size:28
Alignment explanation
Indices: 76799108--76799167 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
76799098 TGATTTTAGA
76799108 AAATGAGGTATTGGGACCTCATTTCTAT
1 AAATGAGGTATTGGGACCTCATTTCTAT
76799136 AAATGAGGTATTGGGACCTCATTTCTAT
1 AAATGAGGTATTGGGACCTCATTTCTAT
76799164 AAAT
1 AAAT
76799168 TGAGCCATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (28 bp):
AAATGAGGTATTGGGACCTCATTTCTAT
Found at i:76800606 original size:25 final size:25
Alignment explanation
Indices: 76800578--76800630 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
76800568 CGTGTAGCTA
*
76800578 CATTCTGACCCATAGCTCGTGTGAG
1 CATTCTGACCCACAGCTCGTGTGAG
** *
76800603 CATTCTGATTCACAGCTTGTGTGAG
1 CATTCTGACCCACAGCTCGTGTGAG
76800628 CAT
1 CAT
76800631 ACATGTACAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (25 bp):
CATTCTGACCCACAGCTCGTGTGAG
Found at i:76809492 original size:29 final size:29
Alignment explanation
Indices: 76809459--76809518 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
76809449 TAGGAATATG
76809459 AAATTCCATTA-GTATATCTTAGGTTAATT
1 AAATTCCATTAGGT-TATCTTAGGTTAATT
*
76809488 AAATTCCATTAGGTTATTTTAGGTTAATT
1 AAATTCCATTAGGTTATCTTAGGTTAATT
76809517 AA
1 AA
76809519 TTTAATTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (29 bp):
AAATTCCATTAGGTTATCTTAGGTTAATT
Found at i:76813608 original size:40 final size:40
Alignment explanation
Indices: 76813542--76813708 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76813532 AAATTGAATG
* * *
76813542 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76813581 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76813621 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76813661 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76813701 ATATCCGG
1 ATATCCGG
76813709 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76821616 original size:40 final size:40
Alignment explanation
Indices: 76821550--76821716 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76821540 AAATTGAATG
* * *
76821550 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76821589 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76821629 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76821669 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76821709 ATATCCGG
1 ATATCCGG
76821717 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76825448 original size:22 final size:22
Alignment explanation
Indices: 76825423--76825466 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76825413 TAGTCATATA
76825423 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
76825445 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
76825467 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:76825578 original size:15 final size:15
Alignment explanation
Indices: 76825558--76825614 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
76825548 ATTCAATATT
76825558 AATATTTTAATAATA
1 AATATTTTAATAATA
*
76825573 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
76825592 AATATATTAATAATA
1 AATATTTTAATAATA
*
76825607 AATGTTTT
1 AATATTTT
76825615 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:76826088 original size:14 final size:13
Alignment explanation
Indices: 76826069--76826107 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 13
76826059 CAAGAAAAGT
76826069 AAATCATTTTCCA
1 AAATCATTTTCCA
76826082 GAAATCATTTTCCA
1 -AAATCATTTTCCA
76826096 AAAGTCATTTTC
1 AAA-TCATTTTC
76826108 TGTGAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 3 0.12
14 21 0.88
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (13 bp):
AAATCATTTTCCA
Found at i:76827106 original size:28 final size:27
Alignment explanation
Indices: 76827069--76827128 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
76827059 CAGAAACAGT
* *
76827069 ATCAGTTGGGCCTTAGCCCAATAACAAA
1 ATCAGGTGGGCCTAAGCCCAAT-ACAAA
*
76827097 ATCAGGTGGGCCTAAGCCCAATACAGA
1 ATCAGGTGGGCCTAAGCCCAATACAAA
76827124 ATCAG
1 ATCAG
76827129 TATTAGATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 9 0.31
28 20 0.69
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (27 bp):
ATCAGGTGGGCCTAAGCCCAATACAAA
Found at i:76827311 original size:22 final size:22
Alignment explanation
Indices: 76827269--76827311 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76827259 CACTAAGTCA
* * *
76827269 ACAGAACGGCTCAATGTCGTAG
1 ACAGAACGGCTAAAGGCCGTAG
76827291 ACAGAACGGCTAAAGGCCGTA
1 ACAGAACGGCTAAAGGCCGTA
76827312 AATATTGCAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.28, T:0.14
Consensus pattern (22 bp):
ACAGAACGGCTAAAGGCCGTAG
Found at i:76829359 original size:8 final size:8
Alignment explanation
Indices: 76829348--76829391 Score: 81
Period size: 8 Copynumber: 5.6 Consensus size: 8
76829338 ATAAAAGGGT
76829348 AAAAAGT-
1 AAAAAGTA
76829355 AAAAAGTA
1 AAAAAGTA
76829363 AAAAAGTA
1 AAAAAGTA
76829371 AAAAAGTA
1 AAAAAGTA
76829379 AAAAAGTA
1 AAAAAGTA
76829387 AAAAA
1 AAAAA
76829392 ATGTTAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 7 0.19
8 29 0.81
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAAGTA
Found at i:76833183 original size:39 final size:38
Alignment explanation
Indices: 76833137--76833348 Score: 321
Period size: 39 Copynumber: 5.7 Consensus size: 38
76833127 CCGCACAAAG
*
76833137 GCCTTCGGGACTTAACCCGGATATCACAATTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTGCACAATT
* *
76833176 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAA-TTGCACAATT
76833215 GCCTTCGGGCTTAGCCCGG--AT--CAATTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTGCACAATT
76833249 GCCTTCGGGCTTAGCCCGGATATCACAATTGCAC-ATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTGCACAATT
76833286 -CCTTCGGGCTTAG-CCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAA-TTGCACAATT
76833323 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
76833349 TCGAACATTC
Statistics
Matches: 159, Mismatches: 5, Indels: 18
0.87 0.03 0.10
Matches are distributed among these distances:
34 28 0.18
35 15 0.09
36 21 0.13
37 8 0.05
38 39 0.25
39 48 0.30
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTGCACAATT
Found at i:76833259 original size:73 final size:75
Alignment explanation
Indices: 76833097--76833347 Score: 307
Period size: 73 Copynumber: 3.3 Consensus size: 75
76833087 TCGTTCAAAC
* * ** * ** *
76833097 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGA-AT-
76833162 ACAATTGCACAATT
62 ACAATTGCACAATT
76833176 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGG-AT-CAA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGAATACAA
76833239 TTGCACAATT
66 TTGCACAATT
* *
76833249 GCCTTCGGGCTTAGCCCGGATATCACAA-TTGCAC-ATT-CCTTCGGGCTTAG-CCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGA-AT-AC
76833310 AATTTGCACAATT
64 AA-TTGCACAATT
76833323 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
76833348 CTCGAACATT
Statistics
Matches: 157, Mismatches: 10, Indels: 15
0.86 0.05 0.08
Matches are distributed among these distances:
69 4 0.03
70 13 0.08
71 5 0.03
72 5 0.03
73 43 0.27
74 35 0.22
75 2 0.01
77 9 0.06
78 32 0.20
79 9 0.06
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.25
Consensus pattern (75 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGAATACAA
TTGCACAATT
Found at i:76833325 original size:108 final size:112
Alignment explanation
Indices: 76833137--76833343 Score: 350
Period size: 108 Copynumber: 1.9 Consensus size: 112
76833127 CCGCACAAAG
*
76833137 GCCTTCGGGACTTAACCCGGATATCACAATTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 GCCTTCGGGACTTAACCCGGATATCACAATTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
76833202 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATCAATTGCACAATT
66 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATCAATTGCACAATT
*
76833249 GCCTTCGGG-CTTAGCCCGGATATCACAATTGCAC-ATT-CCTTCGGGCTTAG-CCGGATATCAC
1 GCCTTCGGGACTTAACCCGGATATCACAATTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
* *
76833310 AATTTGCACAATTGCCTTCGGGCTTAGCCCGGAT
66 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGAT
76833344 ATCACTCGAA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
108 42 0.46
109 13 0.14
110 3 0.03
111 24 0.26
112 9 0.10
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (112 bp):
GCCTTCGGGACTTAACCCGGATATCACAATTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATCAATTGCACAATT
Found at i:76835383 original size:17 final size:18
Alignment explanation
Indices: 76835341--76835389 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
76835331 AGTTGAAAAG
76835341 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
76835360 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
76835377 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
76835390 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:76836277 original size:40 final size:40
Alignment explanation
Indices: 76836211--76836377 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
76836201 AAATTGAATG
* * *
76836211 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76836250 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
76836290 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76836330 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76836370 ATATCCGG
1 ATATCCGG
76836378 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76843390 original size:17 final size:18
Alignment explanation
Indices: 76843348--76843396 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
76843338 AGTTGAAAAG
76843348 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
76843367 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
76843384 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
76843397 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:76844283 original size:40 final size:40
Alignment explanation
Indices: 76844217--76844383 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76844207 AAATTGAATG
* * *
76844217 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
76844256 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
76844296 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76844336 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76844376 ATATCCGG
1 ATATCCGG
76844384 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76851054 original size:28 final size:28
Alignment explanation
Indices: 76851022--76851120 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
76851012 GCAATAAGCC
*
76851022 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
76851050 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
76851078 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
76851107 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76851121 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:76858134 original size:28 final size:28
Alignment explanation
Indices: 76858102--76858200 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
76858092 GCAATAAGCC
*
76858102 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
76858130 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
76858158 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
76858187 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76858201 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:76864339 original size:29 final size:29
Alignment explanation
Indices: 76864307--76864383 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
76864297 AATCATATTC
*
76864307 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
76864336 ATATGGCCCATTAGTCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
76864365 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
76864384 GCCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:76864477 original size:17 final size:18
Alignment explanation
Indices: 76864455--76864499 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
76864445 TTCCTATTAT
76864455 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
76864472 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
76864491 -GGCCCATAT
1 GGGCCCATAT
76864500 GGCCAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 7 0.29
18 15 0.62
19 2 0.08
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:76866112 original size:43 final size:43
Alignment explanation
Indices: 76866051--76866136 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
76866041 TCAACTCAAC
* *
76866051 ACCTATTACATGATGCATCACAACTGAGTCATCGTGGGACAAT
1 ACCTATTACATCATGCATCACAAATGAGTCATCGTGGGACAAT
76866094 ACCTATTACATCATGCATCACAAATGAGTCATCGTGGGACAAT
1 ACCTATTACATCATGCATCACAAATGAGTCATCGTGGGACAAT
76866137 CTCATCGAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
ACCTATTACATCATGCATCACAAATGAGTCATCGTGGGACAAT
Found at i:76867988 original size:26 final size:27
Alignment explanation
Indices: 76867951--76868009 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
76867941 TTCCTCGGCC
* *
76867951 TTTTGATGATTTTACCCTTGGTAA-AA
1 TTTTGATCATTTTACCCTTAGTAATAA
*
76867977 TTTTGATCATTTTGCCCTTAGTAATAA
1 TTTTGATCATTTTACCCTTAGTAATAA
76868004 TTTTGA
1 TTTTGA
76868010 GAAAATATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (27 bp):
TTTTGATCATTTTACCCTTAGTAATAA
Found at i:76870432 original size:40 final size:40
Alignment explanation
Indices: 76870377--76870594 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
76870367 CGGATGATAA
* *
76870377 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
76870417 CCGGGCTAAGCCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76870457 ACGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76870497 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76870537 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
76870577 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76870595 TACTTGGTTC
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76873205 original size:96 final size:97
Alignment explanation
Indices: 76872992--76873424 Score: 338
Period size: 98 Copynumber: 4.5 Consensus size: 97
76872982 ACCATGGCGA
* * * * * * * * *
76872992 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCAGCCTCGATATGTG-TC-AGCGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCTAGTGTAA
* * * * * * **
76873055 GGCCATGTCTGAGACTTGGAATCGACAC-CGG
66 GACCATGTCTGGGACATGGCATTGGCACTAAG
* * * *
76873086 TATAGAGAGCCAGTTTAAGACCATGTTTGGAACATGGCATTGGTATTGTTATGTGAGCTAATGTA
1 TAT-GAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCTAGTGTA
76873151 AGACCATGTCTGGGACATGGCATTGGC-CTCAA-
65 AGACCATGTCTGGGACATGGCATTGGCACT-AAG
* * *
76873183 TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTG-TCAGTGTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCT-AGTGTA
* ** * *
76873247 AGATCATGTCAAGGATATGGAATTGGCACTAATG
65 AGACCATGTCTGGGACATGGCATTGGCACTAA-G
* * * * * ** *
76873281 TATGAGAGCCAGTGTAACACCATGTTCGGGACATGGCATCGGCCTCGACATGTAAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCTAGTGTAA
* * * * * *
76873346 GACCATGTTTGGAACATGGCATCGACACCGATG
66 GACCATGTCTGGGACATGGCATTGGCA-CTAAG
* * ** * *
76873379 TATGGGAGCCAGTATAAGACCATGTCCGGGACATGGCATCAGCATT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
76873425 TTACCCTTTT
Statistics
Matches: 266, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
94 3 0.01
95 42 0.16
96 78 0.29
97 30 0.11
98 110 0.41
99 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (97 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATTGGCACTAAG
Found at i:76873317 original size:98 final size:97
Alignment explanation
Indices: 76873085--76873323 Score: 286
Period size: 96 Copynumber: 2.5 Consensus size: 97
76873075 ATCGACACCG
* * * *
76873085 GTATAGAGAGCCAGTTTAAGACCATGTTTGGAACATGGCATTGGTATTGTTATGTGAGCTAATGT
1 GTAT-GAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGAGCTAATGT
** *
76873150 AAGACCATGTCTGGGACATGGCATTGGCCTCAA
65 AAGACCATGTCAAGGACATGGAATTGGCCTCAA
* * *
76873183 -TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGTG-TCAGTGT
1 GTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGAGCT-AATGT
* *
76873246 AAGATCATGTCAAGGATATGGAATTGGCACT-AA
65 AAGACCATGTCAAGGACATGGAATTGGC-CTCAA
* * *
76873279 TGTATGAGAGCCAGTGTAACACCATGTTCGGGACATGGCATCGGC
1 -GTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
76873324 CTCGACATGT
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
95 1 0.01
96 76 0.63
97 5 0.04
98 39 0.32
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (97 bp):
GTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATATGAGCTAATGTA
AGACCATGTCAAGGACATGGAATTGGCCTCAA
Found at i:76873403 original size:50 final size:50
Alignment explanation
Indices: 76872992--76873418 Score: 173
Period size: 48 Copynumber: 8.8 Consensus size: 50
76872982 ACCATGGCGA
*
76872992 TATGAGAGCCAGTGTAAGACCATG-TCTGGGACATAGCATC-AGCCTCGA--
1 TATGAGAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCGA-CCTCGATG
* * * * * * *
76873040 TAT--GTGTCAGCGTAAGGCCATG-TCTGAGACTTGGAATCGACAC-CG--G
1 TATGAGAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCGAC-CTCGATG
* * * * *** *
76873086 TATAGAGAGCCAGTTTAAGACCATGTTTGGAACATGGCATTGGTATTG-T-
1 TAT-GAGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGACCTCGATG
* * * * * *
76873135 TATGTGAGCTAATGTAAGACCATG-TCTGGGACATGGCATTGGCCTC-A-A
1 TATGAGAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCGACCTCGATG
* * * * * *
76873183 TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-
1 TATGAGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGACCTCGATG
* * * * * * * * *
76873231 TAT-ATGTGTCAGTGTAAGATCATG-TCAAGGATATGGAATTGGCACT-AATG
1 TATGA-GAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCGAC-CTCGATG
* *
76873281 TATGAGAGCCAGTGTAACACCATGTTCGGGACATGGCATCGGCCTCGA--
1 TATGAGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGACCTCGATG
* * * *
76873329 CATGTA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAC-CGATG
1 TATG-AGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGAC-CTCGATG
* * *
76873379 TATGGGAGCCAGTATAAGACCATGTCCGGGACATGGCATC
1 TATGAGAGCCAGTGTAAGACCATGTTCGGGACATGGCATC
76873419 AGCATTTTAC
Statistics
Matches: 277, Mismatches: 74, Indels: 54
0.68 0.18 0.13
Matches are distributed among these distances:
46 33 0.12
47 4 0.01
48 139 0.50
49 34 0.12
50 64 0.23
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (50 bp):
TATGAGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCGACCTCGATG
Found at i:76874488 original size:28 final size:29
Alignment explanation
Indices: 76874450--76874508 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 29
76874440 TTACCCCTTC
76874450 CTTTTTCCTCATTTTATAGGCTCACTAAG
1 CTTTTTCCTCATTTTATAGGCTCACTAAG
76874479 CTTTTT-CTCATTTTATAGGCTCACTAAG
1 CTTTTTCCTCATTTTATAGGCTCACTAAG
76874507 CT
1 CT
76874509 ATCTCGGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (29 bp):
CTTTTTCCTCATTTTATAGGCTCACTAAG
Found at i:76877788 original size:40 final size:40
Alignment explanation
Indices: 76877744--76877824 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 40
76877734 ACTAATATGT
* *
76877744 CAAAGTTATACCGAACCGCACACTAAGTGCCAAATTTAGC
1 CAAAGCTATACCGAACCACACACTAAGTGCCAAATTTAGC
* * * * **
76877784 CAAAGCTATTCCTAACCACACATTAGGTGCCATTTTTAGC
1 CAAAGCTATACCGAACCACACACTAAGTGCCAAATTTAGC
76877824 C
1 C
76877825 GATATGTCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (40 bp):
CAAAGCTATACCGAACCACACACTAAGTGCCAAATTTAGC
Found at i:76882004 original size:23 final size:24
Alignment explanation
Indices: 76881952--76882004 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
76881942 TATCGATATA
* *
76881952 TCAGCTCGTAAGAGCTTACTATTT
1 TCAGCTCATAAGAGCTTACTAGTT
*
76881976 TCAGCTCATTAGAGCTTACT-GTT
1 TCAGCTCATAAGAGCTTACTAGTT
76881999 TCAGCT
1 TCAGCT
76882005 AGCTTACCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (24 bp):
TCAGCTCATAAGAGCTTACTAGTT
Found at i:76888372 original size:39 final size:39
Alignment explanation
Indices: 76888318--76888480 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
76888308 TGTGAATGAA
*
76888318 TGTGCGAATTGTGATATCCGGGCTAAGCCTGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
76888357 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* ** *
76888396 TGTACGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
76888435 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCAAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
76888475 TGTGCG
1 TGTGCG
76888481 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:76895388 original size:19 final size:19
Alignment explanation
Indices: 76895364--76895407 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
76895354 TTTGGGGAGA
76895364 CTACTCAACCCACCATCCG
1 CTACTCAACCCACCATCCG
76895383 CTACTCAACCCACCATCCG
1 CTACTCAACCCACCATCCG
76895402 CTACTC
1 CTACTC
76895408 TCCACCCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.25, C:0.52, G:0.05, T:0.18
Consensus pattern (19 bp):
CTACTCAACCCACCATCCG
Found at i:76895559 original size:25 final size:25
Alignment explanation
Indices: 76895525--76895591 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
76895515 TTTTAATAAC
*
76895525 TGGGGCAAAGCCCTTTTTGATAAAT
1 TGGGGCAAAGCCCTTTTCGATAAAT
76895550 TGGGGCAAAGCCCTTTTCGATAAAT
1 TGGGGCAAAGCCCTTTTCGATAAAT
*
76895575 TGGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
76895592 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAT
Found at i:76900061 original size:31 final size:31
Alignment explanation
Indices: 76900023--76900086 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76900013 CCTTTTCATA
*
76900023 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTAATAACACTGGGCCGAAGCCT
**
76900054 TTTCATATTTAATATTACTGGGCCGAAGCCT
1 TTTCATATTTAATAACACTGGGCCGAAGCCT
76900085 TT
1 TT
76900087 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTAATAACACTGGGCCGAAGCCT
Found at i:76900385 original size:25 final size:24
Alignment explanation
Indices: 76900279--76900399 Score: 183
Period size: 24 Copynumber: 5.0 Consensus size: 24
76900269 GCTTTATCAT
*
76900279 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
76900304 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76900327 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
76900351 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
76900376 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
76900400 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 18 0.20
24 41 0.46
25 31 0.34
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Done.