Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 26 of 345
Found at i:8425318 original size:14 final size:14
Alignment explanation
Indices: 8425299--8425342 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
8425289 TAAAATATGA
*
8425299 AAAAAAAATTTTAT
1 AAAAAAACTTTTAT
*
8425313 AAAAAATACTATTAT
1 AAAAAA-ACTTTTAT
*
8425328 AACAAAACTTTTAT
1 AAAAAAACTTTTAT
8425342 A
1 A
8425343 TTTTTAACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAAAACTTTTAT
Found at i:8428457 original size:17 final size:17
Alignment explanation
Indices: 8428427--8428460 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8428417 AAAGTTTTCT
*
8428427 CCCTTTCTATTCTGCTA
1 CCCTTTCTACTCTGCTA
*
8428444 CCCTTTCTGCTCTGCTA
1 CCCTTTCTACTCTGCTA
8428461 GGGCACAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.38, G:0.09, T:0.44
Consensus pattern (17 bp):
CCCTTTCTACTCTGCTA
Found at i:8428918 original size:31 final size:31
Alignment explanation
Indices: 8428874--8428950 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
8428864 GTGGAGGAGG
* *
8428874 AGCCATTCATGGGTGTGCTAGCGTGGAGAGA
1 AGCCATTCGTGGGTGTGCTAGCGTGGAGAAA
* * *
8428905 ATCCATTCGTGGGTGTGCTGGTGTGGAGAAA
1 AGCCATTCGTGGGTGTGCTAGCGTGGAGAAA
*
8428936 AGCCGTTCGTGGGTG
1 AGCCATTCGTGGGTG
8428951 CATGGTGGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.16, G:0.40, T:0.26
Consensus pattern (31 bp):
AGCCATTCGTGGGTGTGCTAGCGTGGAGAAA
Found at i:8429320 original size:44 final size:44
Alignment explanation
Indices: 8429233--8429324 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
8429223 TTCAACCTGT
* * * *
8429233 TCCACTGCAACCTCAAGGAGATAAGACTTGTATCTTGAGTCTGC
1 TCCACTGCAACCTCAAGGAGATAAGACTAGTAGCTTAAATCTGC
* * * *
8429277 TCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGC
1 TCCACTGCAACCTCAAGGAGATAAGACTAGTAGCTTAAATCTGC
8429321 TCCA
1 TCCA
8429325 TTGCTGATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (44 bp):
TCCACTGCAACCTCAAGGAGATAAGACTAGTAGCTTAAATCTGC
Found at i:8429511 original size:81 final size:82
Alignment explanation
Indices: 8429264--8429514 Score: 204
Period size: 81 Copynumber: 3.0 Consensus size: 82
8429254 TAAGACTTGT
* *
8429264 ATCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGC
1 ATCTTGAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGC
8429329 TGATACATGGAGATAAGATTCACC
66 TGATACATGGAGAT---A---A-C
* * ** * * *** * * **
8429353 ATCTTCGA-TCAATTCCACTACTGC-TGAGGGAGATAAGATCT-GTAATTTTTAGTCTGCTCCGC
1 ATCTT-GAGTCTACTCCACTACAACTTCAGGGAGATAAG-GCTAGT-GGCTTAAATCTGCTCCAT
* * * *
8429415 TGCCGCTTCAGGGAGATAA-
63 TGCTGATACATGGAGATAAC
*
8429434 ATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGC
1 ATCTTGAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGC
8429499 TGATACATGGAGATAA
66 TGATACATGGAGATAA
8429515 GATTTGCCGT
Statistics
Matches: 119, Mismatches: 37, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
80 2 0.02
81 44 0.37
82 14 0.12
83 1 0.01
86 1 0.01
88 14 0.12
89 41 0.34
90 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (82 bp):
ATCTTGAGTCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGC
TGATACATGGAGATAAC
Found at i:8429546 original size:170 final size:171
Alignment explanation
Indices: 8429263--8429781 Score: 743
Period size: 170 Copynumber: 3.0 Consensus size: 171
8429253 ATAAGACTTG
* * *
8429263 TATCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTG
1 TATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTG
** *** *
8429328 CTGATACATGGAGATAAGATTCACCATCTTCGATCAATTCCACTACTGCTGAGGGAGATAAGATC
66 CTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
* * *
8429393 TGTAATTTTTAGTCTGCTCCGCTGCCGCTTCAGGGAGATAA
131 TGCAATTTTCAGTCTGCTCCGCTGCCACTTCAGGGAGATAA
8429434 -ATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTG
1 TATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTG
* *
8429498 CTGATACATGGAGATAAGATTTGCCGTCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
* *
8429563 TGCAATTTTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGA
131 TGCAATTTTCAGTCTGCTCCGCTGCCACTTCAGGGAGAT-A-A
*
8429606 CTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAATGGCTTAAATCTGCTCC
1 ----TATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCC
* * * * *
8429671 ATTGCCGATGCATAGAGATAAGATTTGCAATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAA
62 ATTGCTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
* * *
8429736 GATCTACAATTTTCAGTCTGCTCCACTACCAACTTCAGGGAGATAA
127 GATCTGCAATTTTCAGTCTGCTCCGCTGCC-ACTTCAGGGAGATAA
8429782 GGCTAGTGGC
Statistics
Matches: 311, Mismatches: 29, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
170 152 0.49
171 1 0.00
172 1 0.00
176 1 0.00
177 143 0.46
178 13 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (171 bp):
TATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTG
CTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
TGCAATTTTCAGTCTGCTCCGCTGCCACTTCAGGGAGATAA
Found at i:8429580 original size:44 final size:45
Alignment explanation
Indices: 8429532--8429782 Score: 160
Period size: 44 Copynumber: 5.6 Consensus size: 45
8429522 CGTCTTCGAC
**
8429532 CTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCAATTTTCAGT
1 CTGCTCCACTACAACTTCAGGGAGATAAGATCTGCAATTTTCAGT
** * * * * *
8429576 CTGCTCTGCTGCAACTTCAGGGAGATAAGA-CTTG-TATCTTGAGC
1 CTGCTCCACTACAACTTCAGGGAGATAAGATC-TGCAATTTTCAGT
* * * * *
8429620 CTACTCCACTACAACTTCAGGGAGATAAG-GCT--AATGGCTTAAAT
1 CTGCTCCACTACAACTTCAGGGAGATAAGATCTGCAAT--TTTCAGT
* * * * ** * *
8429664 CTGCTCCATTGCCGA-TGCATAGAGATAAGATTTGCAATCTTTGA-T
1 CTGCTCCACT-ACAACTTCAGGGAGATAAGATCTGCAAT-TTTCAGT
** *
8429709 CTGCTCCACTACTGCTT-AGGGAGATAAGATCTACAATTTTCAGT
1 CTGCTCCACTACAACTTCAGGGAGATAAGATCTGCAATTTTCAGT
8429753 CTGCTCCACTACCAACTTCAGGGAGATAAG
1 CTGCTCCACTA-CAACTTCAGGGAGATAAG
8429783 GCTAGTGGCT
Statistics
Matches: 153, Mismatches: 41, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 97 0.63
45 32 0.21
46 14 0.09
47 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGATCTGCAATTTTCAGT
Found at i:8429691 original size:177 final size:177
Alignment explanation
Indices: 8429237--8429782 Score: 791
Period size: 177 Copynumber: 3.1 Consensus size: 177
8429227 ACCTGTTCCA
* * * * *
8429237 CTGCAACCTCAAGGAGATAAGACTTGTATCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
** ***
8429302 GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCGATCAATT
66 GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCT
* * *
8429367 CCACTACTGCTGAGGGAGATAAGATCTGTAATTTTTAGTCTGCTCCG
131 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTCCG
**
8429414 CTGCCGCTTCAGGGAGAT-A-A-----ATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
* *
8429472 GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTTGCCGTCTTCGACCTGCT
66 GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCT
*
8429537 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTCTG
131 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTCCG
8429584 CTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
* * * * * *
8429649 GCTAATGGCTTAAATCTGCTCCATTGCCGATGCATAGAGATAAGATTTGCAATCTTTGATCTGCT
66 GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCT
* *
8429714 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGTCTGCTCCA
131 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTCCG
*
8429761 CTACCAACTTCAGGGAGATAAG
1 CT-GCAACTTCAGGGAGATAAG
8429783 GCTAGTGGCT
Statistics
Matches: 329, Mismatches: 32, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
170 152 0.46
171 1 0.00
172 1 0.00
175 1 0.00
176 1 0.00
177 155 0.47
178 18 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (177 bp):
CTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCACTACAACTTCAGGGAGATAAG
GCTAGTGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTTGCCATCTTCGATCTGCT
CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTCCG
Found at i:8429797 original size:134 final size:133
Alignment explanation
Indices: 8429623--8429891 Score: 394
Period size: 134 Copynumber: 2.0 Consensus size: 133
8429613 CTTGAGCCTA
*
8429623 CTCCACTACAACTTCAGGGAGATAAGGCTAATGGCTTAAATCTGCTCCATTGCCGATGCATAGAG
1 CTCCACTACAACTTCAGGGAGATAAGGCTAATGGCTTAAATCTGCTCCATTGCCGATACATAGAG
** * *
8429688 ATAAGATTTGCAATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGT
66 ATAAGATTCACAATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAGT
8429753 CTG
131 CTG
* * * *
8429756 CTCCACTACCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCTATTGCCGATATATGGA
1 CTCCACTA-CAACTTCAGGGAGATAAGGCTAATGGCTTAAATCTGCTCCATTGCCGATACATAGA
** * * * *
8429821 GATAAGATTCACCGTCTTCGATCTGTTCTACTACTACTTAGGGAGATAATATCTGCAATTTTCAG
65 GATAAGATTCACAATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAG
8429886 TCTG
130 TCTG
8429890 CT
1 CT
8429892 ACACCATCCT
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
133 8 0.07
134 112 0.93
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (133 bp):
CTCCACTACAACTTCAGGGAGATAAGGCTAATGGCTTAAATCTGCTCCATTGCCGATACATAGAG
ATAAGATTCACAATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAGT
CTG
Found at i:8441084 original size:17 final size:17
Alignment explanation
Indices: 8441052--8441085 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8441042 AAAGTTTTCT
* *
8441052 CCCTTTCTATTGTGCTA
1 CCCTTTCTACTCTGCTA
8441069 CCCTTTCTACTCTGCTA
1 CCCTTTCTACTCTGCTA
8441086 GGGCACAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.35, G:0.09, T:0.44
Consensus pattern (17 bp):
CCCTTTCTACTCTGCTA
Found at i:8442078 original size:13 final size:14
Alignment explanation
Indices: 8442062--8442097 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8442052 CAATCTCATA
8442062 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
8442075 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
8442088 TCTC-ATTTCA
1 TCTCAATTTCA
8442098 TTCCAATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:8442087 original size:18 final size:19
Alignment explanation
Indices: 8442049--8442089 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
8442039 TGGTTCATGT
8442049 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
8442068 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
8442086 TTTC
1 TTTC
8442090 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:8442224 original size:23 final size:23
Alignment explanation
Indices: 8442194--8442251 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
8442184 GTGGATTCCT
8442194 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
8442217 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
8442240 CCCAAACACACC
1 CCCAAACACACC
8442252 CGGAATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.47, C:0.43, G:0.03, T:0.07
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:8442773 original size:15 final size:15
Alignment explanation
Indices: 8442753--8442799 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
8442743 TAATATATAT
8442753 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
8442768 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
8442783 TTCAATCAATATAAA
1 TTCAATCAATATAAA
8442798 TT
1 TT
8442800 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:8444100 original size:13 final size:13
Alignment explanation
Indices: 8444082--8444113 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
8444072 TTTTATTTCA
8444082 TTTATTTCTTTAT
1 TTTATTTCTTTAT
8444095 TTTATTTCTTTAT
1 TTTATTTCTTTAT
8444108 TTTATT
1 TTTATT
8444114 ATTAAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTCTTTAT
Found at i:8447647 original size:34 final size:35
Alignment explanation
Indices: 8447537--8447702 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
8447527 TCCTCATTGA
** *
8447537 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
8447572 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
8447612 AATACCATACCTACATTTCACAGCTCA-TATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
8447646 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8447681 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8447703 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
34 29 0.25
35 57 0.50
38 1 0.01
39 5 0.04
40 23 0.20
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8447662 original size:74 final size:73
Alignment explanation
Indices: 8447532--8447702 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
8447522 GGTTTTCCTC
** * * **
8447532 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGAAATGCCATACCTACATTTCTTAACT
1 ATTGAAATACCATACCTACATTTCACAACTCGATATGGGAAATACCATACCTACATTTCACAACT
8447597 CAGTATGG
66 CAGTATGG
*
8447605 ATTTGATAATACCATACCTACATTTCACAGCTC-ATAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCGATATGGGA-AATACCATACCTACATTTCACA
8447668 ACTCAGTATGG
63 ACTCAGTATGG
8447679 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
8447703 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
69 21 0.24
72 2 0.02
73 4 0.05
74 38 0.43
75 23 0.26
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCGATATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:8447714 original size:35 final size:34
Alignment explanation
Indices: 8447609--8447714 Score: 119
Period size: 35 Copynumber: 3.1 Consensus size: 34
8447599 GTATGGATTT
8447609 GATAATACCATACCTACATTTCACAGC-T-CATATG
1 GATAATACCATACCTACATTTCACA-CTTGC-TATG
*
8447643 GATAATACCATACCTACATTTCACAACTCAG-TATG
1 GATAATACCATACCTACATTTCAC-ACT-TGCTATG
* *
8447678 GATGATACCATACCTACATTTCACACTTTGCCATG
1 GATAATACCATACCTACATTTCACAC-TTGCTATG
8447713 GA
1 GA
8447715 ACACCATGGT
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
34 28 0.45
35 34 0.55
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29
Consensus pattern (34 bp):
GATAATACCATACCTACATTTCACACTTGCTATG
Found at i:8454652 original size:34 final size:35
Alignment explanation
Indices: 8454542--8454707 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
8454532 TCCTCATTGA
** *
8454542 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
8454577 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
8454617 AATACCATACCTACATTTCACAGCTCA-TATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
8454651 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8454686 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8454708 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
34 29 0.25
35 57 0.50
38 1 0.01
39 5 0.04
40 23 0.20
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8454667 original size:74 final size:73
Alignment explanation
Indices: 8454537--8454707 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
8454527 GGTTTTCCTC
** * * **
8454537 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGAAATGCCATACCTACATTTCTTAACT
1 ATTGAAATACCATACCTACATTTCACAACTCGATATGGGAAATACCATACCTACATTTCACAACT
8454602 CAGTATGG
66 CAGTATGG
*
8454610 ATTTGATAATACCATACCTACATTTCACAGCTC-ATAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCGATATGGGA-AATACCATACCTACATTTCACA
8454673 ACTCAGTATGG
63 ACTCAGTATGG
8454684 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
8454708 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
69 21 0.24
72 2 0.02
73 4 0.05
74 38 0.43
75 23 0.26
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCGATATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:8454719 original size:35 final size:34
Alignment explanation
Indices: 8454614--8454719 Score: 119
Period size: 35 Copynumber: 3.1 Consensus size: 34
8454604 GTATGGATTT
8454614 GATAATACCATACCTACATTTCACAGC-T-CATATG
1 GATAATACCATACCTACATTTCACA-CTTGC-TATG
*
8454648 GATAATACCATACCTACATTTCACAACTCAG-TATG
1 GATAATACCATACCTACATTTCAC-ACT-TGCTATG
* *
8454683 GATGATACCATACCTACATTTCACACTTTGCCATG
1 GATAATACCATACCTACATTTCACAC-TTGCTATG
8454718 GA
1 GA
8454720 ACACCATGGT
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
34 28 0.45
35 34 0.55
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29
Consensus pattern (34 bp):
GATAATACCATACCTACATTTCACACTTGCTATG
Found at i:8457466 original size:12 final size:13
Alignment explanation
Indices: 8457449--8457478 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8457439 AACTCTTACA
8457449 TTTTAAT-TTTTC
1 TTTTAATGTTTTC
8457461 TTTTAATGTTTTC
1 TTTTAATGTTTTC
8457474 TTTTA
1 TTTTA
8457479 TTTGTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (13 bp):
TTTTAATGTTTTC
Found at i:8458128 original size:92 final size:91
Alignment explanation
Indices: 8458007--8458183 Score: 246
Period size: 92 Copynumber: 1.9 Consensus size: 91
8457997 TTTAAAAAGT
* * ** * * *
8458007 AATTAAGTCTCTCTTTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGTATCAAAAAGAC
1 AATTAAGCCTCTCTTTTTTATTCACTCAATTGAGCACTTAAACTTTCAAAATACATAAAAAAAAA
*
8458072 CCTCAAACTTTTTAAAAAAAAAAAAC
66 CCTCAAAATTTTTAAAAAAAAAAAAC
* *
8458098 AATTAAGCCTCTACTTTTTTATTCACTCAATTGGGTACTTAAACTTTCAAAATACATAAAAAAAA
1 AATTAAGCCTCT-CTTTTTTATTCACTCAATTGAGCACTTAAACTTTCAAAATACATAAAAAAAA
*
8458163 ACCTCAAAATTTTTTAAAAAA
65 ACCTCAAAATTTTTAAAAAAA
8458184 GCAATTAAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
91 11 0.15
92 63 0.85
ACGTcount: A:0.43, C:0.18, G:0.05, T:0.34
Consensus pattern (91 bp):
AATTAAGCCTCTCTTTTTTATTCACTCAATTGAGCACTTAAACTTTCAAAATACATAAAAAAAAA
CCTCAAAATTTTTAAAAAAAAAAAAC
Found at i:8458698 original size:86 final size:85
Alignment explanation
Indices: 8458554--8458722 Score: 223
Period size: 86 Copynumber: 2.0 Consensus size: 85
8458544 TAATATGAGC
* * *
8458554 AGGGGTTTAATTGTTTATTTGAAAAATTTTAAGGGTCTTTCTGATGCATTTTGAAAGTTCAAGTA
1 AGGGGCTTAATTGTTTATTTGAAAAAATTTAAGGGCCTTTCTGATGCATTTTGAAAGTTCAAGTA
*
8458619 CTCAATGGAGTGAAAAAAAT
66 CTCAATGGAATGAAAAAAAT
* * * *
8458639 AGGGGCTTAATTGCTTT-TTTTAAAGAAATTTGAGGGCCTTTTTGATGCATTTTGAAAGTTTAAG
1 AGGGGCTTAATTG-TTTATTTGAAA-AAATTTAAGGGCCTTTCTGATGCATTTTGAAAGTTCAAG
* *
8458703 TGCTCAATTGAATGAAAAAA
64 TACTCAATGGAATGAAAAAA
8458723 TAAGAAGAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
85 18 0.25
86 54 0.75
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (85 bp):
AGGGGCTTAATTGTTTATTTGAAAAAATTTAAGGGCCTTTCTGATGCATTTTGAAAGTTCAAGTA
CTCAATGGAATGAAAAAAAT
Found at i:8458795 original size:2 final size:2
Alignment explanation
Indices: 8458788--8458816 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8458778 AGCCTTAATT
8458788 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8458817 GTGAATACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8459617 original size:1 final size:1
Alignment explanation
Indices: 8459611--8459635 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
8459601 ATTATAACTC
8459611 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
8459636 GAACCCATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8477775 original size:20 final size:20
Alignment explanation
Indices: 8477750--8477791 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8477740 ATTTTTTAAA
* *
8477750 AAATAAATTTCATACTTTTT
1 AAATAAATTTAATAATTTTT
*
8477770 AAATAATTTTAATAATTTTT
1 AAATAAATTTAATAATTTTT
8477790 AA
1 AA
8477792 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
AAATAAATTTAATAATTTTT
Found at i:8478521 original size:15 final size:14
Alignment explanation
Indices: 8478503--8478546 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
8478493 TAATTTTTTT
*
8478503 ATTTATATTTTTAAG
1 ATTT-TATTTTTAAA
*
8478518 ATTTTATAATTTAAA
1 ATTTTAT-TTTTAAA
8478533 ATTTTATTTTTAAA
1 ATTTTATTTTTAAA
8478547 TTAGATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (14 bp):
ATTTTATTTTTAAA
Found at i:8478641 original size:45 final size:45
Alignment explanation
Indices: 8478605--8478697 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
8478595 TATCTAGATT
*
8478605 AATT-AATAATATTATAAAAATATAAAGATTAAAATTAAATATCA
1 AATTGAATAATATTATAAAAATATAAAGATTAAAATTAAAGATCA
*
8478649 AATTGAATAATATTATAAAAATATAAAGATTAAAATTAAATATCA
1 AATTGAATAATATTATAAAAATATAAAGATTAAAATTAAAGATCA
8478694 AATT
1 AATT
8478698 TAACCTAAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.08
45 44 0.92
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (45 bp):
AATTGAATAATATTATAAAAATATAAAGATTAAAATTAAAGATCA
Found at i:8484001 original size:33 final size:31
Alignment explanation
Indices: 8483930--8484006 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 31
8483920 AAAAGTTATA
*
8483930 TTATTTATTTTAAAAAATATTTATGAAATAAT
1 TTATTTA-TTTAAAAAATATGTATGAAATAAT
8483962 TATATTTATTTAAAAAATGAGTGTATCG-AATAAT
1 T-TATTTATTTAAAAAAT-A-TGTAT-GAAATAAT
*
8483996 TTATTTTTTTA
1 TTATTTATTTA
8484007 TAATGTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 11 0.28
33 16 0.41
34 11 0.28
35 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (31 bp):
TTATTTATTTAAAAAATATGTATGAAATAAT
Found at i:8485980 original size:14 final size:14
Alignment explanation
Indices: 8485957--8485986 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8485947 TTGAAAATAT
8485957 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
8485971 GTTGATTTGGATTG
1 GTTGAATTGGATTG
8485985 GT
1 GT
8485987 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:8487763 original size:15 final size:15
Alignment explanation
Indices: 8487743--8487774 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8487733 CCGAAAACAG
8487743 ACAAACTTTATTATT
1 ACAAACTTTATTATT
8487758 ACAAACTTTATTATT
1 ACAAACTTTATTATT
8487773 AC
1 AC
8487775 TGAATTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.44
Consensus pattern (15 bp):
ACAAACTTTATTATT
Found at i:8497967 original size:14 final size:14
Alignment explanation
Indices: 8497944--8497973 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8497934 TTGAAAATAT
8497944 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
8497958 GTTGATTTGGATTG
1 GTTGAATTGGATTG
8497972 GT
1 GT
8497974 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:8498954 original size:19 final size:19
Alignment explanation
Indices: 8498911--8498956 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8498901 ATGTATTTTT
*
8498911 ATATTTTTAATAATTTTAAG
1 ATATTTTTAAT-ATTTTAAA
8498931 A-ATTTTTAAT-TTTTAAAA
1 ATATTTTTAATATTTT-AAA
8498949 ATATTTTT
1 ATATTTTT
8498957 TTTATAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 4 0.17
18 3 0.13
19 15 0.65
20 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
ATATTTTTAATATTTTAAA
Found at i:8500230 original size:3 final size:3
Alignment explanation
Indices: 8500224--8500306 Score: 100
Period size: 3 Copynumber: 28.3 Consensus size: 3
8500214 TTCTAAGATT
* ** *
8500224 TTA TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA -AA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
8500267 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8500307 GGTTTCATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
2 5 0.07
3 61 0.88
4 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8500596 original size:23 final size:24
Alignment explanation
Indices: 8500546--8500605 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
8500536 ATAATGACAA
*
8500546 TTGTAATAAAAAATATTGGTACAT
1 TTGTAATAAAAAATATTGGTACAC
*
8500570 TTGTAATAAATAGATA-T-GTACAC
1 TTGTAATAAA-AAATATTGGTACAC
8500593 TTGTAATAAAAAA
1 TTGTAATAAAAAA
8500606 ACTAATTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 2 0.06
23 15 0.47
24 11 0.34
25 4 0.12
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (24 bp):
TTGTAATAAAAAATATTGGTACAC
Found at i:8500833 original size:22 final size:21
Alignment explanation
Indices: 8500801--8500841 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
8500791 TAAACAAAGT
8500801 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
8500822 AAATAAAAAGAAACAAAGAA
1 AAAT-AAAAGAAACAAAGAA
8500842 AAGAAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:8500947 original size:16 final size:16
Alignment explanation
Indices: 8500926--8500957 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8500916 ATGTTTGGTT
8500926 GGCTGTAATGGAATAG
1 GGCTGTAATGGAATAG
*
8500942 GGCTGTAATTGAATAG
1 GGCTGTAATGGAATAG
8500958 ATCTGTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.34, T:0.28
Consensus pattern (16 bp):
GGCTGTAATGGAATAG
Found at i:8500963 original size:16 final size:16
Alignment explanation
Indices: 8500927--8500966 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8500917 TGTTTGGTTG
*
8500927 GCTGTAATGGAATAGG
1 GCTGTAATGGAATAGA
*
8500943 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
*
8500959 TCTGTAAT
1 GCTGTAAT
8500967 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:8501037 original size:44 final size:46
Alignment explanation
Indices: 8500952--8501041 Score: 123
Period size: 44 Copynumber: 2.0 Consensus size: 46
8500942 GGCTGTAATT
* *
8500952 GAATAGATCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATCAGTAATTCAATTGTTTAGTTGAATGGAATG
*
8500998 GAATAGAACTGTAAT-AGT-ATTC-TTGTGTTTAGTTGAATGGAATG
1 GAATAGAACTGTAATCAGTAATTCAAT-TGTTTAGTTGAATGGAATG
8501042 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
43 1 0.03
44 22 0.55
45 3 0.08
46 14 0.35
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (46 bp):
GAATAGAACTGTAATCAGTAATTCAATTGTTTAGTTGAATGGAATG
Found at i:8501304 original size:58 final size:57
Alignment explanation
Indices: 8501191--8501302 Score: 133
Period size: 57 Copynumber: 1.9 Consensus size: 57
8501181 TAACCATATT
*
8501191 TTAACATAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTC
1 TTAACATAATTATTATT-AATATAATTTAATAAAATAATATATAATCTAATAAAATTC
*
8501249 TTAATATAATTATTATT-ATATGAA-TTAA-AAATCATAATATATAATACT-ATAAAA
1 TTAACATAATTATTATTAATAT-AATTTAATAAA--ATAATATATAAT-CTAATAAAA
8501303 ATAATATATA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
55 3 0.06
56 8 0.17
57 20 0.42
58 17 0.35
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
TTAACATAATTATTATTAATATAATTTAATAAAATAATATATAATCTAATAAAATTC
Found at i:8508305 original size:21 final size:21
Alignment explanation
Indices: 8508273--8508332 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
8508263 GTCGATCAGA
*
8508273 CACTTTATGTGTCGTATTAGG
1 CACTTTGTGTGTCGTATTAGG
* *
8508294 CA-TCTTGTGTGTCGTTTTATG
1 CACT-TTGTGTGTCGTATTAGG
*
8508315 CACTTTTTGTGTCGTATT
1 CACTTTGTGTGTCGTATT
8508333 CTGATCAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.13, C:0.15, G:0.22, T:0.50
Consensus pattern (21 bp):
CACTTTGTGTGTCGTATTAGG
Found at i:8512565 original size:6 final size:6
Alignment explanation
Indices: 8512554--8512585 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8512544 TCTGTACCTG
*
8512554 ACTGTT ACTGTT ACTGCT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
8512586 CATTACGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (6 bp):
ACTGTT
Found at i:8515219 original size:130 final size:129
Alignment explanation
Indices: 8515079--8515470 Score: 568
Period size: 130 Copynumber: 3.0 Consensus size: 129
8515069 AAGATACAAG
* * *
8515079 TGAAATTTGAAGTGATATTTGATTATTTTGAGCGAACGCGAAATTGTAACCCAACACGTTAGAGC
1 TGAAATTTGAAGTGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGC
8515144 ACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCGTTTTAAAGAATTTTTGAATGAATGA
66 ACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCGTTTTAAAGAATTTTTGAATGAATGA
* * * * *
8515208 TGAAATCTTGAAGGGATATTTGATTATTTTCAGCAAACTCGGAATTGCAACCCAGCACGTTAGGG
1 TGAAAT-TTGAAGTGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGG
* * * *
8515273 TACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGACATG
65 CACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCGTTTTAAAGAATTTTTGAATGA-ATG
8515338 AA
129 -A
* * *
8515340 TGAAATTTTGAAGTGATATTCGGTTATTTTGAGCAAACGCGAAATTGCAACCTAACACGTTAGGG
1 TGAAA-TTTGAAGTGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGG
* * * * *
8515405 CACGATTTCGCGAATTGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTTTGAATGAATGA
65 CACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCGTTTTAAAGAATTTTTGAATGAATGA
8515470 T
1 T
8515471 TATAAAGCTA
Statistics
Matches: 230, Mismatches: 29, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
129 6 0.03
130 109 0.47
131 6 0.03
132 108 0.47
133 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (129 bp):
TGAAATTTGAAGTGATATTTGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGC
ACGATTCCGCGAATTGCCAAATATCAAATTTCGTCTTCGTTTTAAAGAATTTTTGAATGAATGA
Found at i:8515930 original size:23 final size:24
Alignment explanation
Indices: 8515903--8515948 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
8515893 AAGTTATATG
8515903 AAAATAA-TAACATGTACCATAGT
1 AAAATAATTAACATGTACCATAGT
*
8515926 AAAATAATTTAATATGTACCATA
1 AAAATAA-TTAACATGTACCATA
8515949 TACATGTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
25 13 0.65
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAATAATTAACATGTACCATAGT
Found at i:8516261 original size:16 final size:17
Alignment explanation
Indices: 8516232--8516264 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8516222 TCTAAAAGAA
8516232 ATTATATGTATAAAAAT
1 ATTATATGTATAAAAAT
*
8516249 ATTA-ATGTTTAAAAAT
1 ATTATATGTATAAAAAT
8516265 GTATTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTATATGTATAAAAAT
Found at i:8516569 original size:18 final size:18
Alignment explanation
Indices: 8516542--8516576 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8516532 ATACAAATGA
* *
8516542 TACAATTAATATTAACAT
1 TACAAATAATATAAACAT
8516560 TACAAATAATATAAACA
1 TACAAATAATATAAACA
8516577 ATAAAAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (18 bp):
TACAAATAATATAAACAT
Found at i:8526461 original size:132 final size:131
Alignment explanation
Indices: 8526024--8526530 Score: 563
Period size: 130 Copynumber: 3.9 Consensus size: 131
8526014 ACCTAAAGGA
* * * ** * * * *
8526024 ATATTCGATTGTTTTGACCAAACGAGAAATCACAACCCAGCGCGATAGGGCATGATTCC-TGAAT
1 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * * * * * * * * * * * *
8526088 CGTCAAACACCGAGTATT-GCCTTCGTTTTAAGGGATTTTTAGAAGATACGAGTGAAA-TTTGAA
66 TGCCAAATATCAAAT-TTCGTCTTCATTTTAAAGAATTTTTAAAAGA-ATGAATGAAATTTTGAA
8526151 GTG
129 GTG
* * *
8526154 ATATTCGATTATTTTGAGCGAACGCGAAATTGTAACCCAGCACGTTAGAGCACGATTCCGCGAAT
1 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * *
8526219 TGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTGAATGAATG-ATGAAATCTTGAAGT
66 TGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGAATGAATGAAATTTTGAAGT
8526283 G
131 G
* * * * * *
8526284 ATATTTGATTATTTTCAGCAAACTCGGAATTGCAACCCAGCACGTTAGGGTACGATTCTGCGAAT
1 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
*
8526349 TGCCAAATACCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGACATGAATGAAATTTTGAAG
66 TGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGA-ATGAATGAAATTTTGAAG
8526414 TG
130 TG
* *
8526416 ATATTCGGTTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAAT
1 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * * * * * *
8526481 TGCCAAACATCGAATCTCGTCTTCGTTTTGAAGAATTTTTTAATGAATGA
66 TGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGAATGA
8526531 TTATAAAGCT
Statistics
Matches: 315, Mismatches: 57, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
129 5 0.02
130 159 0.50
131 41 0.13
132 110 0.35
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (131 bp):
ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
TGCCAAATATCAAATTTCGTCTTCATTTTAAAGAATTTTTAAAAGAATGAATGAAATTTTGAAGT
G
Found at i:8526937 original size:2 final size:2
Alignment explanation
Indices: 8526932--8526974 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
8526922 AAAAATAGGG
* *
8526932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8526974 A
1 A
8526975 AAGTTATATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8527012 original size:23 final size:24
Alignment explanation
Indices: 8526985--8527030 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
8526975 AAGTTATATG
8526985 AAAATAA-TAACATGTACCATAGT
1 AAAATAATTAACATGTACCATAGT
*
8527008 AAAATAATTTAATATGTACCATA
1 AAAATAA-TTAACATGTACCATA
8527031 TACATATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
25 13 0.65
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (24 bp):
AAAATAATTAACATGTACCATAGT
Found at i:8527926 original size:19 final size:20
Alignment explanation
Indices: 8527899--8527936 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8527889 CCCATTATTT
8527899 ATTTATTTTT-TGTTTTAAC
1 ATTTATTTTTATGTTTTAAC
*
8527918 ATTTGTTTTTATGTTTTAA
1 ATTTATTTTTATGTTTTAA
8527937 ATGTATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.68
Consensus pattern (20 bp):
ATTTATTTTTATGTTTTAAC
Found at i:8528324 original size:18 final size:18
Alignment explanation
Indices: 8528297--8528331 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8528287 ATACAAATGA
* *
8528297 TACAATTAATATTAACAT
1 TACAAATAATATAAACAT
8528315 TACAAATAATATAAACA
1 TACAAATAATATAAACA
8528332 ATAAAAAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (18 bp):
TACAAATAATATAAACAT
Found at i:8545296 original size:10 final size:11
Alignment explanation
Indices: 8545278--8545358 Score: 68
Period size: 10 Copynumber: 7.7 Consensus size: 11
8545268 TAAATTCTAA
8545278 AAGATAAATAT
1 AAGATAAATAT
8545289 AA-ATAAATA-
1 AAGATAAATAT
8545298 AAGAT-AAT-T
1 AAGATAAATAT
8545307 AAGGATAAATA-
1 AA-GATAAATAT
8545318 AAGATAAATA-
1 AAGATAAATAT
*
8545328 AAAATAAATCAT
1 AAGATAAAT-AT
*
8545340 AAGATTAAATCT
1 AAGA-TAAATAT
8545352 AA-ATAAA
1 AAGATAAA
8545359 ATCCTTAATA
Statistics
Matches: 59, Mismatches: 3, Indels: 17
0.75 0.04 0.22
Matches are distributed among these distances:
9 7 0.12
10 32 0.54
11 9 0.15
12 6 0.10
13 5 0.08
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.25
Consensus pattern (11 bp):
AAGATAAATAT
Found at i:8545300 original size:20 final size:20
Alignment explanation
Indices: 8545277--8545358 Score: 87
Period size: 20 Copynumber: 4.0 Consensus size: 20
8545267 TTAAATTCTA
8545277 AAAGATAAATATAAATAAAT
1 AAAGATAAATATAAATAAAT
8545297 AAAGAT-AAT-TAAGGATAAAT
1 AAAGATAAATATAA--ATAAAT
*
8545317 AAAGATAAATAAAAATAAAT
1 AAAGATAAATATAAATAAAT
*
8545337 CATAAGATTAAATCTAAATAAA
1 -A-AAGA-TAAATATAAATAAA
8545359 ATCCTTAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
18 3 0.06
19 3 0.06
20 24 0.46
21 4 0.08
22 6 0.12
23 12 0.23
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (20 bp):
AAAGATAAATATAAATAAAT
Found at i:8547070 original size:24 final size:24
Alignment explanation
Indices: 8547038--8547085 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8547028 TATTTTGAGT
8547038 TTGTCAGGATTCCCTAATATAGGA
1 TTGTCAGGATTCCCTAATATAGGA
8547062 TTGTCAGGATTCCCTAATATAGGA
1 TTGTCAGGATTCCCTAATATAGGA
8547086 ATAATCTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (24 bp):
TTGTCAGGATTCCCTAATATAGGA
Found at i:8547620 original size:87 final size:87
Alignment explanation
Indices: 8547467--8547655 Score: 218
Period size: 87 Copynumber: 2.2 Consensus size: 87
8547457 TGAATTTTTT
** * ** * *
8547467 TTTTTTTTGTAATTTCTCAAATAAATTGGTTCCCGGTTAACTTGTAATACCAACTTAATTAGAAG
1 TTTTTTTT-TAATTTCTCAAATAAATTAATGCCCAATTAACTTGTAATACCAACTCAATTAAAAG
* ** *
8547532 C-TCATATATGTATAGATATATAA
65 CTTAATATAAATATACA-ATATAA
* *
8547555 TTTTTTTTTAATTTCTCAACTAAATTAATGCCCAATTAACTTGTAATACCAACTCGATTAAAAGC
1 TTTTTTTTTAATTTCTCAAATAAATTAATGCCCAATTAACTTGTAATACCAACTCAATTAAAAGC
8547620 TTAATATAAATATACAATATAA
66 TTAATATAAATATACAATATAA
* *
8547642 TTATTTTTAAATTT
1 TTTTTTTTTAATTT
8547656 AAATTTAAAT
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
87 66 0.78
88 19 0.22
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (87 bp):
TTTTTTTTTAATTTCTCAAATAAATTAATGCCCAATTAACTTGTAATACCAACTCAATTAAAAGC
TTAATATAAATATACAATATAA
Found at i:8547658 original size:6 final size:6
Alignment explanation
Indices: 8547647--8547672 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8547637 TATAATTATT
8547647 TTTAAA TTTAAA TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
8547673 CAAGTATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:8549767 original size:21 final size:21
Alignment explanation
Indices: 8549743--8549787 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8549733 AACACGGTTG
*
8549743 TGTCACTAGATCAAACGGCGA
1 TGTCACTAGATCAAACGGCCA
* * *
8549764 TGTCGCTAGGTCACACGGCCA
1 TGTCACTAGATCAAACGGCCA
8549785 TGT
1 TGT
8549788 TGAGAGCCCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTCACTAGATCAAACGGCCA
Found at i:8552661 original size:37 final size:38
Alignment explanation
Indices: 8552569--8552667 Score: 137
Period size: 39 Copynumber: 2.6 Consensus size: 38
8552559 GCTCTGATGA
* * *
8552569 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGCTTAGCAC-TATGT
8552608 GCTTCAGTTAGCCTTCGGGCTTCCGCTTAGCAC-ATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGCTTAGCACTATGT
* *
8552645 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
8552668 AGATCACGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 24 0.44
39 31 0.56
ACGTcount: A:0.12, C:0.27, G:0.25, T:0.35
Consensus pattern (38 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGCTTAGCACTATGT
Found at i:8552668 original size:18 final size:18
Alignment explanation
Indices: 8552608--8552669 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
8552598 GCACTTGTGT
* *
8552608 GCTTCAGTTAGCCTTCGG
1 GCTTCAGCTAGACTTCGG
* * *
8552626 GCTTCCGCTTAGCACAT-GT
1 GCTTCAGC-TAG-ACTTCGG
8552645 GCTTCAGCTAGACTTCGG
1 GCTTCAGCTAGACTTCGG
8552663 GCTTCAG
1 GCTTCAG
8552670 ATCACGATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 3 0.09
18 17 0.52
19 11 0.33
20 2 0.06
ACGTcount: A:0.15, C:0.29, G:0.26, T:0.31
Consensus pattern (18 bp):
GCTTCAGCTAGACTTCGG
Found at i:8553522 original size:18 final size:20
Alignment explanation
Indices: 8553481--8553527 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
8553471 TATTCCAAGC
* *
8553481 TCAATATCAGTCAATATTTT
1 TCAATATCAATCAATATTTA
8553501 TCAATATCAATC-A-ATTTA
1 TCAATATCAATCAATATTTA
8553519 TCAATATCA
1 TCAATATCA
8553528 TTCAGTAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 13 0.52
19 1 0.04
20 11 0.44
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.40
Consensus pattern (20 bp):
TCAATATCAATCAATATTTA
Found at i:8554159 original size:7 final size:7
Alignment explanation
Indices: 8554147--8554188 Score: 77
Period size: 7 Copynumber: 6.1 Consensus size: 7
8554137 AACCAGAATA
8554147 TAATAAT
1 TAATAAT
8554154 TAATAAT
1 TAATAAT
8554161 TAATAAT
1 TAATAAT
8554168 TAATAAT
1 TAATAAT
8554175 TAATAAT
1 TAATAAT
8554182 TAA-AAT
1 TAATAAT
8554188 T
1 T
8554189 CGGATTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.11
7 31 0.89
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TAATAAT
Found at i:8554851 original size:21 final size:21
Alignment explanation
Indices: 8554827--8554892 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
8554817 GTCACTATCT
8554827 TAATTAATTTAATAATAATAA
1 TAATTAATTTAATAATAATAA
* **
8554848 TAATTTAATATAA-AACCATAA
1 TAA-TTAATTTAATAATAATAA
8554869 TAA-TAA-TTAATAATAATATA
1 TAATTAATTTAATAATAATA-A
8554889 TAAT
1 TAAT
8554893 CTAAGAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 3 0.09
19 8 0.23
20 4 0.11
21 12 0.34
22 8 0.23
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (21 bp):
TAATTAATTTAATAATAATAA
Found at i:8557559 original size:17 final size:16
Alignment explanation
Indices: 8557537--8557568 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8557527 TAACTCAAAA
8557537 TAATCATCTTACTTATT
1 TAATCATCTTA-TTATT
8557554 TAATCATCTTATTAT
1 TAATCATCTTATTAT
8557569 CATTGTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATCATCTTATTATT
Found at i:8566498 original size:8 final size:8
Alignment explanation
Indices: 8566485--8566510 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8566475 GGGATGGGAA
8566485 TGGGAAAT
1 TGGGAAAT
8566493 TGGGAAAT
1 TGGGAAAT
8566501 TGGGAAAT
1 TGGGAAAT
8566509 TG
1 TG
8566511 TACGTAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.27
Consensus pattern (8 bp):
TGGGAAAT
Found at i:8566907 original size:15 final size:17
Alignment explanation
Indices: 8566877--8566915 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
8566867 TGATAAAAAT
8566877 ATAATTTCACTATTTTA
1 ATAATTTCACTATTTTA
*
8566894 ATAATTT-A-TATTTTT
1 ATAATTTCACTATTTTA
8566909 ATAATTT
1 ATAATTT
8566916 TTAAAAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 1 0.05
17 7 0.33
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAATTTCACTATTTTA
Found at i:8570905 original size:23 final size:24
Alignment explanation
Indices: 8570855--8570909 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
8570845 ATAAAGAGTC
*
8570855 CAAAATTTTACAGGGGATTTTTAG
1 CAAAATTTTACAGGGGAGTTTTAG
** *
8570879 CAAAATTTT-CAGTTGAGTTTTAT
1 CAAAATTTTACAGGGGAGTTTTAG
8570902 CAAAATTT
1 CAAAATTT
8570910 ACTTAAGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 18 0.67
24 9 0.33
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.42
Consensus pattern (24 bp):
CAAAATTTTACAGGGGAGTTTTAG
Found at i:8574512 original size:2 final size:2
Alignment explanation
Indices: 8574507--8574538 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8574497 ATCAAAAAAG
8574507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8574539 GAAACAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8576863 original size:4 final size:4
Alignment explanation
Indices: 8576854--8576883 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
8576844 TGGACTGAGG
8576854 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
8576884 GTATATTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8578397 original size:3 final size:3
Alignment explanation
Indices: 8578389--8578417 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8578379 TTTAATTTAG
8578389 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8578418 GAAATAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8578748 original size:24 final size:24
Alignment explanation
Indices: 8578720--8578771 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
8578710 GTATGACAAT
8578720 TGTATGGTATTGATATTGTAAAAA
1 TGTATGGTATTGATATTGTAAAAA
*
8578744 TGTATGGTATTGATATTGTACAAA
1 TGTATGGTATTGATATTGTAAAAA
8578768 TGTA
1 TGTA
8578772 CAAAAATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (24 bp):
TGTATGGTATTGATATTGTAAAAA
Found at i:8578983 original size:3 final size:3
Alignment explanation
Indices: 8578975--8579006 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8578965 TATTTATTAA
8578975 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8579007 CAAATAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8579228 original size:25 final size:25
Alignment explanation
Indices: 8579200--8579248 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
8579190 AGAGAATAGA
*
8579200 AAAGAAAAACAGGG-GAGAAAGAAAG
1 AAAGAAAAA-AGGGAAAGAAAGAAAG
*
8579225 AAAGGAAAAAGGGAAAGAAAGAAA
1 AAAGAAAAAAGGGAAAGAAAGAAA
8579249 AGGGAGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.67, C:0.02, G:0.31, T:0.00
Consensus pattern (25 bp):
AAAGAAAAAAGGGAAAGAAAGAAAG
Found at i:8579240 original size:17 final size:15
Alignment explanation
Indices: 8579220--8579253 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
8579210 AGGGGAGAAA
8579220 GAAAGAAAGGAAAAAGG
1 GAAAGAAA-G-AAAAGG
8579237 GAAAGAAAGAAAAGG
1 GAAAGAAAGAAAAGG
8579252 GA
1 GA
8579254 GAAATAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
GAAAGAAAGAAAAGG
Found at i:8579257 original size:17 final size:18
Alignment explanation
Indices: 8579219--8579257 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
8579209 CAGGGGAGAA
8579219 AGAAAGAAAGGAAAAAGG
1 AGAAAGAAAGGAAAAAGG
*
8579237 -GAAAGAAA-GAAAAGGG
1 AGAAAGAAAGGAAAAAGG
8579253 AGAAA
1 AGAAA
8579258 TAGGGATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAGGAAAAAGG
Found at i:8580344 original size:51 final size:53
Alignment explanation
Indices: 8580279--8580386 Score: 141
Period size: 51 Copynumber: 2.1 Consensus size: 53
8580269 AAGTGTCGCC
* *
8580279 TTACTGTTATTGTTCCGGATTCG-TTCTGAAGAGGTACTC-TGTACC-TTACTG
1 TTACTATTAGTGTTCCGGATTCGTTTC-GAAGAGGTACTCGTGTACCGTTACTG
* *
8580330 TTACTATTAGTGTTCCGGATTTGTTTCGATGAGGTACTCTGTGTACCGTTACTG
1 TTACTATTAGTGTTCCGGATTCGTTTCGAAGAGGTACTC-GTGTACCGTTACTG
8580384 TTA
1 TTA
8580387 TTGTTATTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
51 31 0.63
52 3 0.06
53 6 0.12
54 9 0.18
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (53 bp):
TTACTATTAGTGTTCCGGATTCGTTTCGAAGAGGTACTCGTGTACCGTTACTG
Found at i:8580586 original size:18 final size:18
Alignment explanation
Indices: 8580513--8580586 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
8580503 TAAATAAAGG
*
8580513 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
* * *
8580531 TATTGAATAATTGACTAT
1 TACTGAATAACTGACTGT
* * *
8580549 TACTGGATAATTTA-TCGT
1 TACTGAATAACTGACT-GT
8580567 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
8580585 TA
1 TA
8580587 AAGAGTGACT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
17 1 0.02
18 41 0.95
19 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:8582559 original size:21 final size:20
Alignment explanation
Indices: 8582533--8582585 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
8582523 CCTAGTGCTG
8582533 GTCAAAATCAATTTCATGTTA
1 GTCAAAATCAATTT-ATGTTA
*
8582554 GTCAAAATCAAATTTATGTTG
1 GTCAAAATC-AATTTATGTTA
*
8582575 GCCAAAATCAA
1 GTCAAAATCAA
8582586 GTCAATGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 22 0.76
22 5 0.17
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (20 bp):
GTCAAAATCAATTTATGTTA
Found at i:8586866 original size:6 final size:6
Alignment explanation
Indices: 8586855--8586909 Score: 110
Period size: 6 Copynumber: 9.2 Consensus size: 6
8586845 CGCATGCATG
8586855 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
8586903 TATACA T
1 TATACA T
8586910 TGTAATGACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (6 bp):
TATACA
Found at i:8587431 original size:14 final size:13
Alignment explanation
Indices: 8587408--8587437 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
8587398 TTTAATAATA
8587408 AAATAAAGAAATG
1 AAATAAAGAAATG
8587421 AAATAAAAGAAATG
1 AAAT-AAAGAAATG
8587435 AAA
1 AAA
8587438 AAGAAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:8588737 original size:15 final size:15
Alignment explanation
Indices: 8588695--8588738 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8588685 TGAATTTATC
8588695 AAATTTATATTGATTA
1 AAATTTATATTGA-TA
* *
8588711 AAA-TCATTTTGATA
1 AAATTTATATTGATA
8588725 AAATTTATATTGAT
1 AAATTTATATTGAT
8588739 TGAAATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 5 0.22
15 15 0.65
16 3 0.13
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (15 bp):
AAATTTATATTGATA
Found at i:8588749 original size:16 final size:15
Alignment explanation
Indices: 8588695--8588751 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
8588685 TGAATTTATC
*
8588695 AAATTTATATTGATT
1 AAATATATATTGATT
* *
8588710 AAA-ATCATTTTGATA
1 AAATAT-ATATTGATT
*
8588725 AAATTTATATTGATT
1 AAATATATATTGATT
8588740 GAAATATATATT
1 -AAATATATATT
8588752 ATATATATGA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
14 1 0.03
15 20 0.62
16 11 0.34
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (15 bp):
AAATATATATTGATT
Found at i:8589272 original size:23 final size:23
Alignment explanation
Indices: 8589244--8589324 Score: 162
Period size: 23 Copynumber: 3.5 Consensus size: 23
8589234 TAATATTCCG
8589244 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
8589267 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
8589290 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
8589313 GGTGTGTTTGGG
1 GGTGTGTTTGGG
8589325 AGGAATCCAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.07, C:0.04, G:0.42, T:0.47
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATATTCT
Found at i:8589450 original size:18 final size:19
Alignment explanation
Indices: 8589429--8589469 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8589419 AATGAAATGA
8589429 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8589447 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8589466 GAAA
1 GAAA
8589470 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8590234 original size:2 final size:2
Alignment explanation
Indices: 8590227--8590275 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
8590217 GGGACGTTAC
* * * *
8590227 AT AT AT AT AC AT AT AC AT AT AC AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8590269 AC AT AT A
1 AT AT AT A
8590276 CATAATGGTA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (2 bp):
AT
Found at i:8590242 original size:6 final size:6
Alignment explanation
Indices: 8590231--8590279 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
8590221 CGTTACATAT
*
8590231 ATATAC ATATAC ATATAC ATATAC ATAT-- ATATAT ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
8590277 ATA
1 ATA
8590280 ATGGTATAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
4 4 0.10
6 36 0.90
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (6 bp):
ATATAC
Found at i:8590287 original size:22 final size:22
Alignment explanation
Indices: 8590224--8590279 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
8590214 TAGGGGACGT
* * *
8590224 TACATATATATACATATACATA
1 TACATATACATATATATATATA
8590246 TACATATACATATATATATATA
1 TACATATACATATATATATATA
8590268 TACATATACATA
1 TACATATACATA
8590280 ATGGTATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (22 bp):
TACATATACATATATATATATA
Found at i:8592235 original size:31 final size:32
Alignment explanation
Indices: 8592200--8592270 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
8592190 TTAGGTCAAG
* * *
8592200 ACTAAAATTTTAA-AATTCAAAAAATACAGAT
1 ACTAAAATTTTAACAAATCAAAAAATAAAAAT
8592231 ACT-AAA-TTTAACTAAATCAAAAAATAAAAAT
1 ACTAAAATTTTAAC-AAATCAAAAAATAAAAAT
8592262 ACTAAAATT
1 ACTAAAATT
8592271 AATCAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 5 0.15
30 3 0.09
31 21 0.64
32 3 0.09
33 1 0.03
ACGTcount: A:0.61, C:0.10, G:0.01, T:0.28
Consensus pattern (32 bp):
ACTAAAATTTTAACAAATCAAAAAATAAAAAT
Found at i:8592802 original size:22 final size:22
Alignment explanation
Indices: 8592777--8592820 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8592767 TTTTATATGT
8592777 TAAATATAAAT-TTGATTTTAAA
1 TAAAT-TAAATCTTGATTTTAAA
* *
8592799 TAAATTATATCTTTATTTTAAA
1 TAAATTAAATCTTGATTTTAAA
8592821 ATTTTATGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAATTAAATCTTGATTTTAAA
Found at i:8594641 original size:23 final size:23
Alignment explanation
Indices: 8594611--8594655 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
8594601 TGTGTATATA
8594611 TATACACACTAAATTATGATACT
1 TATACACACTAAATTATGATACT
8594634 TATACACACTAAATTATGATAC
1 TATACACACTAAATTATGATAC
8594656 ATCCAAGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.33
Consensus pattern (23 bp):
TATACACACTAAATTATGATACT
Found at i:8603842 original size:26 final size:25
Alignment explanation
Indices: 8603792--8603843 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
8603782 GATTTTATTG
**
8603792 TTATTTATTTTAGGTTTTATATATA
1 TTATTTATTTTAACTTTTATATATA
*
8603817 TTATTTATTTTACACTTTTATGTATA
1 TTATTTATTTTA-ACTTTTATATATA
8603843 T
1 T
8603844 ATACCATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (25 bp):
TTATTTATTTTAACTTTTATATATA
Found at i:8604310 original size:29 final size:27
Alignment explanation
Indices: 8604277--8604346 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
8604267 CTTCTTATAT
* *
8604277 ATATTATGTATTTTTAAAATTATTTTTAC
1 ATATTAT-TATTTTTAAAA-AAATTTTAC
8604306 ATATTAATTA-TTTTAAAAAAATTTTAC
1 ATATT-ATTATTTTTAAAAAAATTTTAC
*
8604333 ATATGATTTATTTT
1 ATATTA-TTATTTT
8604347 AAATCTTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
26 1 0.03
27 14 0.40
28 11 0.31
29 7 0.20
30 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (27 bp):
ATATTATTATTTTTAAAAAAATTTTAC
Found at i:8604425 original size:26 final size:26
Alignment explanation
Indices: 8604396--8604471 Score: 84
Period size: 25 Copynumber: 2.9 Consensus size: 26
8604386 TATTACTTGG
*
8604396 TTTAAA-TTATTTTACATGTTATTCAC
1 TTTAAATTTCTTTTACAT-TTATTCAC
* *
8604422 TTTAAAATTTCTTTTACA-TTATTTAT
1 TTT-AAATTTCTTTTACATTTATTCAC
8604448 TTTAAATTTCTTTTACATATTATT
1 TTTAAATTTCTTTTACAT-TTATT
8604472 ATTTTGAGCC
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 14 0.33
26 12 0.28
27 8 0.19
28 9 0.21
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.59
Consensus pattern (26 bp):
TTTAAATTTCTTTTACATTTATTCAC
Found at i:8604473 original size:26 final size:26
Alignment explanation
Indices: 8604268--8604476 Score: 90
Period size: 26 Copynumber: 7.8 Consensus size: 26
8604258 TTTTACATAC
* *
8604268 TTCTTATATATATTATGTATTTTTAAAAT
1 TTCTTTTACATATTAT-TA-TTTT-AAAT
*
8604297 TAT-TTTTACATATTAATTATTTTAAAA
1 T-TCTTTTACATATT-ATTATTTTAAAT
*** *
8604324 AAATTTTACATATGATTTATTTTAAA-
1 TTCTTTTACATATTA-TTATTTTAAAT
** * *
8604350 -TCTTTGTGTATATCATCTATTTTAAAG
1 TTCTTT-TACATATTAT-TATTTTAAAT
* ** **
8604377 TT-TTATATGTATTACTTGGTTTAAA-
1 TTCTTTTACATATTA-TTATTTTAAAT
* * *
8604402 TTATTTTACATGTTATTCACTTTAAAAT
1 TTCTTTTACATATTATT-A-TTTTAAAT
8604430 TTCTTTTAC--ATTATTTATTTTAAAT
1 TTCTTTTACATATTA-TTATTTTAAAT
8604455 TTCTTTTACATATTATTATTTT
1 TTCTTTTACATATTATTATTTT
8604477 GAGCCTCCTA
Statistics
Matches: 137, Mismatches: 27, Indels: 35
0.69 0.14 0.18
Matches are distributed among these distances:
25 24 0.18
26 48 0.35
27 37 0.27
28 13 0.09
29 12 0.09
30 3 0.02
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (26 bp):
TTCTTTTACATATTATTATTTTAAAT
Found at i:8604518 original size:24 final size:25
Alignment explanation
Indices: 8604268--8604524 Score: 75
Period size: 26 Copynumber: 10.0 Consensus size: 25
8604258 TTTTACATAC
8604268 TTCTTATATATATTATGTATTTTTAAAAT
1 TTCTT-TATATATTAT-TA-TTTT-AAAT
* * *
8604297 TATTTTTACATATTAATTATTTTAAAAAA
1 T-TCTTTATATATT-ATTATTTT--AAAT
* * *
8604326 AT-TTTACATATGATTTATTTTAAAT
1 TTCTTTATATATTA-TTATTTTAAAT
* * *
8604351 CTT-TGTGTATATCATCTATTTTAAAGT
1 -TTCTTTATATATTAT-TATTTTAAA-T
* * **
8604378 TT-TATATGTATTACTTGGTTTAAAT
1 TTCTTTATATATTA-TTATTTTAAAT
* * *
8604403 TAT-TTTACATGTTATTCACTTTAAAAT
1 T-TCTTTATATATTATT-A-TTTTAAAT
*
8604430 TTCTTT-TACATTATTTATTTTAAAT
1 TTCTTTATATATTA-TTATTTTAAAT
* * **
8604455 TTCTTTTACATATTATTATTTTGAGC
1 TTC-TTTATATATTATTATTTTAAAT
* *
8604481 CTC-CTA-ATA-T-TTATTTTAAAT
1 TTCTTTATATATTATTATTTTAAAT
8604502 TTCTTTATATA-TATTATTTTAAA
1 TTCTTTATATATTATTATTTTAAA
8604525 ATTGTCTTAT
Statistics
Matches: 170, Mismatches: 40, Indels: 41
0.68 0.16 0.16
Matches are distributed among these distances:
21 10 0.06
22 3 0.02
23 7 0.04
24 12 0.07
25 18 0.11
26 61 0.36
27 35 0.21
28 5 0.03
29 14 0.08
30 5 0.03
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
TTCTTTATATATTATTATTTTAAAT
Found at i:8604534 original size:25 final size:23
Alignment explanation
Indices: 8604426--8604524 Score: 67
Period size: 25 Copynumber: 4.1 Consensus size: 23
8604416 ATTCACTTTA
*
8604426 AAATTTCTTTTACATTATTTATTTT
1 AAATTTC-TTTATA-TATTTATTTT
*
8604451 AAATTTCTTTTACATATTATTATTTT
1 AAATTTC-TTTATATA-T-TTATTTT
* *** *
8604477 GAGCCTC-CTA-ATATTTATTTT
1 AAATTTCTTTATATATTTATTTT
8604498 AAATTTCTTTATATATATTATTTT
1 AAATTTCTTTATATAT-TTATTTT
8604522 AAA
1 AAA
8604525 ATTGTCTTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
21 10 0.17
22 3 0.05
23 7 0.12
24 14 0.24
25 15 0.25
26 10 0.17
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
AAATTTCTTTATATATTTATTTT
Found at i:8604682 original size:32 final size:28
Alignment explanation
Indices: 8604627--8604686 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 28
8604617 TTTTATATAG
8604627 TATTTATTATATATATTACCTATTTTAA
1 TATTTATTATATATATTACCTATTTTAA
*
8604655 TATTATATATATATATATATCCTCTATTTTAA
1 TATT-TAT-TATATATAT-TAC-CTATTTTAA
8604687 ATTGTCTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 3 0.11
30 9 0.33
31 2 0.07
32 9 0.33
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (28 bp):
TATTTATTATATATATTACCTATTTTAA
Found at i:8611087 original size:93 final size:93
Alignment explanation
Indices: 8610975--8611145 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
8610965 GCCCATAAGT
* *
8610975 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8611040 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8611068 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8611133 CGAGTTCGGATGC
66 CGAGTTCGGATGC
8611146 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8611142 original size:46 final size:46
Alignment explanation
Indices: 8610967--8611142 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
8610957 TGTAACCCGC
* * *
8610967 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8611013 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
8611063 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
8611106 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8611143 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8618982 original size:10 final size:10
Alignment explanation
Indices: 8618967--8618991 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8618957 AAAAGGGACT
8618967 AATTAGTTTG
1 AATTAGTTTG
8618977 AATTAGTTTG
1 AATTAGTTTG
8618987 AATTA
1 AATTA
8618992 CCCAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (10 bp):
AATTAGTTTG
Found at i:8619407 original size:44 final size:43
Alignment explanation
Indices: 8619358--8619693 Score: 176
Period size: 44 Copynumber: 7.6 Consensus size: 43
8619348 AGCCACTAAC
* *
8619358 CTTATCTCCCTAAAGATGCAGTGGAGTAAGTCGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAG-AAGTCGAAGTTACAAGT
* * ** *
8619402 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCAACT
1 CTTATCTCCCTGAAGTTGCAGTGGAGAAGTC-GAAG-TTACAAGT
* * * ** * ** *
8619447 CTTATCTTCTTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAA-C
1 CTTATCTCCCTGAAGTTGCAGTGGAGAAG-TCGAAGTTAC-AAGT
* * * *
8619491 CTTATCTCCCTGAAGATGCACTGGAGTAGGTCGAAGTTGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAG-AAGTCGAAGTTACAAGT
* * * * *
8619535 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGGAGATGGA-AAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGAAGTC-GAAG-T-TACAAGT
* * ** * * *
8619580 CTTATCTTCCTGAAGTTGCAGTGAAGCTGATTGAAGTCACTAACT
1 CTTATCTCCCTGAAGTTGCAGTGGAGAAG-TCGAAGTTAC-AAGT
* ** *
8619625 -TTATCTCCCTGAAGTTGCAGTAGA-ATAGGTCGAAAATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGA-A-GTCGAAGTTA-CAAGT
* *
8619669 CTTATTTCCCTGAAGTTGCGGTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGA
8619694 ACAGATTAAA
Statistics
Matches: 218, Mismatches: 58, Indels: 31
0.71 0.19 0.10
Matches are distributed among these distances:
43 8 0.04
44 113 0.52
45 96 0.44
46 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGAAGTCGAAGTTACAAGT
Found at i:8619544 original size:133 final size:133
Alignment explanation
Indices: 8619306--8619698 Score: 552
Period size: 133 Copynumber: 2.9 Consensus size: 133
8619296 CTACGAATTT
* * * *
8619306 TGGCAAATCTTATTTTCCTGAGGTTGCAGTCAAGCGGATCAAAGCCACTAACCTTATCTCCCTAA
1 TGGCAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAACCTTATCTCCCTGA
* *
8619371 AGATGCAGTGGAGTAAGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
66 AGATGCAGTGGAGTAGGTCGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
8619436 AGA
131 AGA
* *
8619439 TGGCAACTCTTATCTTCTTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAACCTTATCTCCCTGA
1 TGGCAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAACCTTATCTCCCTGA
* *
8619504 AGATGCACTGGAGTAGGTCGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGG
66 AGATGCAGTGGAGTAGGTCGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
8619569 AGA
131 AGA
* * ** * *
8619572 TGGAAAATCTTATCTTCCTGAAGTTGCAGTGAAGCTGATTGAAGTCACTAACTTTATCTCCCTGA
1 TGGCAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAACCTTATCTCCCTGA
* * * * * * * * *
8619637 AGTTGCAGTAGAATAGGTCGAAAATAGCAAATCTTATTTCCCTGAAGTTGCGGTGGAACAGA
66 AGATGCAGTGGAGTAGGTCG-AAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
8619699 TTAAAACCAT
Statistics
Matches: 231, Mismatches: 28, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
133 196 0.85
134 35 0.15
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (133 bp):
TGGCAAATCTTATCTTCCTGAAGTTGCAGTGAAGCGGATCAAAGCCACTAACCTTATCTCCCTGA
AGATGCAGTGGAGTAGGTCGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
AGA
Found at i:8619803 original size:92 final size:93
Alignment explanation
Indices: 8619625--8619879 Score: 261
Period size: 92 Copynumber: 2.7 Consensus size: 93
8619615 GTCACTAACT
* * * *
8619625 TTATCTCCCTGAAGTTGCAGTAGAATAGGTCGAAAATAGCAAATCTTATTTCCCTGAAGTTGCGG
1 TTATCTCTCTGAAGTTGCAGTAGAACAGGTC--AAATAGCAAATCTTATCTCCCTGAAGTTGCAG
*
8619690 TGGAACAGATTAAAACCATAAATTACAGATCC
64 TGGAACAGATTAAAACCATAAATCACAG--CC
*
8619722 -TATCTCTCTGAAGTTGCAGTA-AAGCAGGTC-AA-AGCAAATCTTATCTCCCTGAAGTTGCATT
1 TTATCTCTCTGAAGTTGCAGTAGAA-CAGGTCAAATAGCAAATCTTATCTCCCTGAAGTTGCAGT
* * * *
8619783 GGAACAGATTGAAGCTATAAATCGCAGCC
65 GGAACAGATTAAAACCATAAATCACAGCC
* * ** *
8619812 TTATCT-TCCTGAAGTTGCAGTAGATCAGGTTAAAATTA-CAAGCCTTATCTCCTTGAAGTTGCA
1 TTATCTCT-CTGAAGTTGCAGTAGAACAGG-TCAAA-TAGCAAATCTTATCTCCCTGAAGTTGCA
8619875 GTGGA
63 GTGGA
8619880 GCGGACTGGA
Statistics
Matches: 134, Mismatches: 16, Indels: 19
0.79 0.09 0.11
Matches are distributed among these distances:
90 3 0.02
91 23 0.17
92 50 0.37
93 4 0.03
94 26 0.19
95 3 0.02
96 25 0.19
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (93 bp):
TTATCTCTCTGAAGTTGCAGTAGAACAGGTCAAATAGCAAATCTTATCTCCCTGAAGTTGCAGTG
GAACAGATTAAAACCATAAATCACAGCC
Found at i:8620303 original size:14 final size:14
Alignment explanation
Indices: 8620284--8620327 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
8620274 AGCAAAAAAG
8620284 AGCAAAGCAGCAGA
1 AGCAAAGCAGCAGA
*
8620298 AGCAAA--A-AAG-
1 AGCAAAGCAGCAGA
8620308 AGCAAAGCAGCAGA
1 AGCAAAGCAGCAGA
8620322 AGCAAA
1 AGCAAA
8620328 AGGAAATAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
10 6 0.25
11 2 0.08
12 2 0.08
13 2 0.08
14 12 0.50
ACGTcount: A:0.57, C:0.18, G:0.25, T:0.00
Consensus pattern (14 bp):
AGCAAAGCAGCAGA
Found at i:8620339 original size:27 final size:24
Alignment explanation
Indices: 8620270--8620328 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
8620260 GACTGCAAAA
8620270 CAGAAGCAAAAAAGAGCAAAGCAG
1 CAGAAGCAAAAAAGAGCAAAGCAG
8620294 CAGAAGCAAAAAAGAGCAAAGCAG
1 CAGAAGCAAAAAAGAGCAAAGCAG
8620318 CAGAAGCAAAA
1 CAGAAGCAAAA
8620329 GGAAATAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.59, C:0.17, G:0.24, T:0.00
Consensus pattern (24 bp):
CAGAAGCAAAAAAGAGCAAAGCAG
Found at i:8623604 original size:26 final size:25
Alignment explanation
Indices: 8623554--8623605 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
8623544 GATTTTATTG
**
8623554 TTATTTATTTTAGGTTTTATATATA
1 TTATTTATTTTAACTTTTATATATA
*
8623579 TTATTTATTTTACACTTTTATGTATA
1 TTATTTATTTTA-ACTTTTATATATA
8623605 T
1 T
8623606 ATACCATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (25 bp):
TTATTTATTTTAACTTTTATATATA
Found at i:8624236 original size:26 final size:26
Alignment explanation
Indices: 8624159--8624239 Score: 87
Period size: 25 Copynumber: 3.1 Consensus size: 26
8624149 TATTACTTGG
* *
8624159 TTTAAA-TTATTTTACATGTTATTCACT
1 TTTAAATTTCTTTTACATATTATT-A-T
*
8624186 TTAAAATTTCTTTTAC--ATTATTTAT
1 TTTAAATTTCTTTTACATATTA-TTAT
8624211 TTTAAATTTCTTTTACATATTATTAT
1 TTTAAATTTCTTTTACATATTATTAT
8624237 TTT
1 TTT
8624240 GAGCCTCCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
25 16 0.35
26 11 0.24
27 11 0.24
28 8 0.17
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (26 bp):
TTTAAATTTCTTTTACATATTATTAT
Found at i:8624281 original size:24 final size:25
Alignment explanation
Indices: 8624189--8624287 Score: 75
Period size: 26 Copynumber: 4.1 Consensus size: 25
8624179 ATTCACTTTA
*
8624189 AAATTTCTTT-TACATTATTTATTTT
1 AAATTTCTTTATATATTA-TTATTTT
*
8624214 AAATTTCTTTTACATATTATTATTTT
1 AAATTTC-TTTATATATTATTATTTT
* *** *
8624240 GAGCCTC-CTA-ATA-T-TTATTTT
1 AAATTTCTTTATATATTATTATTTT
8624261 AAATTTCTTTATATA-TATTATTTT
1 AAATTTCTTTATATATTATTATTTT
8624285 AAA
1 AAA
8624288 ATTGTCTTAT
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
21 10 0.18
22 3 0.05
23 7 0.12
24 12 0.21
25 7 0.12
26 13 0.23
27 5 0.09
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (25 bp):
AAATTTCTTTATATATTATTATTTT
Found at i:8624297 original size:25 final size:23
Alignment explanation
Indices: 8624189--8624287 Score: 67
Period size: 25 Copynumber: 4.1 Consensus size: 23
8624179 ATTCACTTTA
*
8624189 AAATTTCTTTTACATTATTTATTTT
1 AAATTTC-TTTATA-TATTTATTTT
*
8624214 AAATTTCTTTTACATATTATTATTTT
1 AAATTTC-TTTATATA-T-TTATTTT
* *** *
8624240 GAGCCTC-CTA-ATATTTATTTT
1 AAATTTCTTTATATATTTATTTT
8624261 AAATTTCTTTATATATATTATTTT
1 AAATTTCTTTATATAT-TTATTTT
8624285 AAA
1 AAA
8624288 ATTGTCTTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
21 10 0.17
22 3 0.05
23 7 0.12
24 14 0.24
25 15 0.25
26 10 0.17
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
AAATTTCTTTATATATTTATTTT
Found at i:8624445 original size:32 final size:28
Alignment explanation
Indices: 8624390--8624449 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 28
8624380 TTTTATATAG
8624390 TATTTATTATATATATTACCTATTTTAA
1 TATTTATTATATATATTACCTATTTTAA
*
8624418 TATTATATATATATATATATCCTCTATTTTAA
1 TATT-TAT-TATATATAT-TAC-CTATTTTAA
8624450 ATTGTCTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 3 0.11
30 9 0.33
31 2 0.07
32 9 0.33
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (28 bp):
TATTTATTATATATATTACCTATTTTAA
Found at i:8626189 original size:23 final size:23
Alignment explanation
Indices: 8626142--8626186 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8626132 TTTAACATTT
8626142 TTAATTTTTGAAAATATTTTAAA
1 TTAATTTTTGAAAATATTTTAAA
8626165 TTAATATTTT-AAAA-ATTTTAAA
1 TTAAT-TTTTGAAAATATTTTAAA
8626187 ATTTTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 8 0.38
23 9 0.43
24 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TTAATTTTTGAAAATATTTTAAA
Found at i:8646748 original size:15 final size:17
Alignment explanation
Indices: 8646718--8646750 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
8646708 ATTTTTATAA
8646718 AAGTATTATATAAATTT
1 AAGTATTATATAAATTT
8646735 AAGTATT-T-TAAATTT
1 AAGTATTATATAAATTT
8646750 A
1 A
8646751 TATTTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
AAGTATTATATAAATTT
Found at i:8647252 original size:19 final size:20
Alignment explanation
Indices: 8647218--8647267 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
8647208 TATATTAAAA
8647218 TATAATATAATT--TATAATT
1 TATAA-ATAATTAATATAATT
*
8647237 TATAAA-AATTAATATACTT
1 TATAAATAATTAATATAATT
*
8647256 TTTAAATAATTA
1 TATAAATAATTA
8647268 GATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.15
18 1 0.04
19 16 0.62
20 5 0.19
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TATAAATAATTAATATAATT
Found at i:8647821 original size:14 final size:14
Alignment explanation
Indices: 8647802--8647828 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8647792 TCCTTAAAAT
8647802 TTTAATTAAGTTCA
1 TTTAATTAAGTTCA
8647816 TTTAATTAAGTTC
1 TTTAATTAAGTTC
8647829 TTGTATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTAATTAAGTTCA
Found at i:8648132 original size:9 final size:9
Alignment explanation
Indices: 8648109--8648192 Score: 60
Period size: 9 Copynumber: 8.9 Consensus size: 9
8648099 AACAAAATTC
8648109 TATAAAAACT
1 TATAAAAA-T
*
8648119 CATAAAAAT
1 TATAAAAAT
*
8648128 TATAAAAAC
1 TATAAAAAT
* * *
8648137 TATTACAAG
1 TATAAAAAT
*
8648146 TATCAAAAT
1 TATAAAAAT
8648155 TATAAAAAAAAT
1 TAT---AAAAAT
*
8648167 TATAAAAAC
1 TATAAAAAT
8648176 TATAAAAAT
1 TATAAAAAT
*
8648185 CATAAAAA
1 TATAAAAA
8648193 AACTTAAAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
9 43 0.74
10 7 0.12
12 8 0.14
ACGTcount: A:0.64, C:0.08, G:0.01, T:0.26
Consensus pattern (9 bp):
TATAAAAAT
Found at i:8648167 original size:12 final size:12
Alignment explanation
Indices: 8648150--8648174 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8648140 TACAAGTATC
8648150 AAAATTATAAAA
1 AAAATTATAAAA
8648162 AAAATTATAAAA
1 AAAATTATAAAA
8648174 A
1 A
8648175 CTATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATTATAAAA
Found at i:8648179 original size:21 final size:18
Alignment explanation
Indices: 8648087--8648192 Score: 79
Period size: 18 Copynumber: 5.5 Consensus size: 18
8648077 ATTTAATTTT
8648087 TTATAAAAAC-ATAACAAAA
1 TTATAAAAACTAT-A-AAAA
8648106 TTCTATAAAAACTCATAAAAA
1 -T-TATAAAAACT-ATAAAAA
* *
8648127 TTATAAAAACTATTACAA
1 TTATAAAAACTATAAAAA
* * *
8648145 GTATCAAAATTATAAAAAAAA
1 TTATAAAAACTAT---AAAAA
8648166 TTATAAAAACTATAAAAA
1 TTATAAAAACTATAAAAA
*
8648184 TCATAAAAA
1 TTATAAAAA
8648193 AACTTAAAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
18 28 0.41
19 10 0.14
20 2 0.03
21 26 0.38
22 1 0.01
23 2 0.03
ACGTcount: A:0.63, C:0.09, G:0.01, T:0.26
Consensus pattern (18 bp):
TTATAAAAACTATAAAAA
Found at i:8648184 original size:30 final size:30
Alignment explanation
Indices: 8648108--8648201 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
8648098 TAACAAAATT
8648108 CTATAAAAACTCATAAAAATTAT---AAAAA
1 CTATAAAAACT-ATAAAAATTATAAAAAAAA
* * * *
8648136 CTATTACAAGTATCAAAATTATAAAAAAAA
1 CTATAAAAACTATAAAAATTATAAAAAAAA
* *
8648166 TTATAAAAACTATAAAAATCAT-AAAAAAA
1 CTATAAAAACTATAAAAATTATAAAAAAAA
8648195 CT-TAAAA
1 CTATAAAA
8648202 TGGACCAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
27 10 0.19
28 13 0.25
29 8 0.15
30 21 0.40
ACGTcount: A:0.64, C:0.10, G:0.01, T:0.26
Consensus pattern (30 bp):
CTATAAAAACTATAAAAATTATAAAAAAAA
Found at i:8649123 original size:3 final size:3
Alignment explanation
Indices: 8649115--8649147 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8649105 ACGATCAAAG
8649115 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8649148 AACTTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8649346 original size:35 final size:35
Alignment explanation
Indices: 8649300--8649370 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
8649290 CTAATATGCA
8649300 GGGTTAATCAAATAATTGCTGGTGAAGTTTATTAG
1 GGGTTAATCAAATAATTGCTGGTGAAGTTTATTAG
8649335 GGGTTAATCAAATAATTGCTGGTGAAGTTTATTAG
1 GGGTTAATCAAATAATTGCTGGTGAAGTTTATTAG
8649370 G
1 G
8649371 CTCTCGGGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (35 bp):
GGGTTAATCAAATAATTGCTGGTGAAGTTTATTAG
Done.