Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 261 of 345
Found at i:77244976 original size:80 final size:80
Alignment explanation
Indices: 77244798--77244985 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
77244788 TTCGAATGAT
* *
77244798 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
77244863 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
77244878 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
77244939 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
77244959 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
77244986 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:77248464 original size:17 final size:19
Alignment explanation
Indices: 77248444--77248481 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
77248434 CAGGGGAAGG
77248444 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
77248461 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
77248480 AA
1 AA
77248482 TTAAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:77249091 original size:3 final size:3
Alignment explanation
Indices: 77249083--77249110 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
77249073 ATGGTAAGTG
77249083 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
77249111 GGTATTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:77249513 original size:6 final size:6
Alignment explanation
Indices: 77249502--77249528 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
77249492 TGTGTACCAC
77249502 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
77249529 CCTTACAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:77250943 original size:23 final size:23
Alignment explanation
Indices: 77250889--77250933 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
77250879 GATCATCGTC
77250889 TTCATCTTCACCTCAACCTCATA
1 TTCATCTTCACCTCAACCTCATA
* *
77250912 TTCATCTTCATCTCCACCTCAT
1 TTCATCTTCACCTCAACCTCAT
77250934 CTTTGTCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.40, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCATCTTCACCTCAACCTCATA
Found at i:77256559 original size:74 final size:74
Alignment explanation
Indices: 77256438--77256585 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
77256428 TACTTCAACC
* *
77256438 AAACTAAATAGCACATAATAGGAAGGAACAAAAAGTTTAGTAGAGAACTCAGAACATTCACCAAA
1 AAACTAAATAGCACATAATAGGAAGAAACAAAAAGTTTAGTAGAGAACTCAAAACATTCACCAAA
77256503 AGCTCAGCT
66 AGCTCAGCT
77256512 AAACTAAATAGCACATAATAGGAAGAAACAAAAAGTTTAGTAGAGAACTCAAAACATTCACCAAA
1 AAACTAAATAGCACATAATAGGAAGAAACAAAAAGTTTAGTAGAGAACTCAAAACATTCACCAAA
77256577 AGCTCAGCT
66 AGCTCAGCT
77256586 TTACACCAAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.50, C:0.18, G:0.15, T:0.18
Consensus pattern (74 bp):
AAACTAAATAGCACATAATAGGAAGAAACAAAAAGTTTAGTAGAGAACTCAAAACATTCACCAAA
AGCTCAGCT
Found at i:77266766 original size:19 final size:17
Alignment explanation
Indices: 77266719--77266766 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
77266709 GTGGCTTAAA
77266719 AAATTAATTAAGTTCAG
1 AAATTAATTAAGTTCAG
77266736 AAATTAAGATTAAGTGTCAGG
1 AAATT-A-ATTAAGT-TCA-G
*
77266757 ATATTAATTA
1 AAATTAATTA
77266767 TCTTAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 11 0.42
20 4 0.15
21 5 0.19
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (17 bp):
AAATTAATTAAGTTCAG
Found at i:77270466 original size:23 final size:23
Alignment explanation
Indices: 77270435--77270561 Score: 132
Period size: 23 Copynumber: 5.4 Consensus size: 23
77270425 ATAGCCCGTA
*
77270435 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* * * * *
77270458 GGAGCTTACCGATCCAGCTCAAA
1 AGAGCTTACTGTTTCAGCTCAAT
77270481 AGAGCTTACTG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
77270503 AGAGCTTACCAT-TTTCAGCTCAAT
1 AGAGCTTA-C-TGTTTCAGCTCAAT
*
77270527 AGAGCTTACTGTTTATCAGCTCAGT
1 AGAGCTTACTG-TT-TCAGCTCAAT
77270552 AAGAGCTTAC
1 -AGAGCTTAC
77270562 CGACCATGAC
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.21
23 28 0.33
24 22 0.26
25 9 0.10
26 9 0.10
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:77270522 original size:46 final size:46
Alignment explanation
Indices: 77270434--77270564 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
77270424 CATAGCCCGT
* *
77270434 AAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATCCAGCTCAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATCCAGCTCAA
*
77270480 AAGAGCTTACTG-TTCAGCTCAATAGAGCTTACC-ATTTTCAGCTCAA
1 AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGA--TCCAGCTCAA
* *
77270526 TAGAGCTTACTGTTTATCAGCTCAGTAAGAGCTTACCGA
1 AAGAGCTTACTG-TT-TCAGCTCAAT-AGAGCTTACCGA
77270565 CCATGACTTG
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.01
45 19 0.26
46 32 0.44
48 1 0.01
49 9 0.12
50 10 0.14
51 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (46 bp):
AAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATCCAGCTCAA
Found at i:77270524 original size:24 final size:24
Alignment explanation
Indices: 77270446--77270562 Score: 107
Period size: 24 Copynumber: 4.9 Consensus size: 24
77270436 GAGCTTACTG
* *
77270446 TTTCAGCTCATTGGAGCTTACCGA-
1 TTTCAGCTCAATAGAGCTTACC-AT
* *
77270470 -TCCAGCTCAAAAGAGCTTA-C-T
1 TTTCAGCTCAATAGAGCTTACCAT
*
77270491 GTTCAGCTCAATAGAGCTTACCAT
1 TTTCAGCTCAATAGAGCTTACCAT
**
77270515 TTTCAGCTCAATAGAGCTTACTGT
1 TTTCAGCTCAATAGAGCTTACCAT
*
77270539 TTATCAGCTCAGTAAGAGCTTACC
1 TT-TCAGCTCAAT-AGAGCTTACC
77270563 GACCATGACT
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
22 18 0.24
23 16 0.21
24 24 0.32
25 9 0.12
26 9 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (24 bp):
TTTCAGCTCAATAGAGCTTACCAT
Found at i:77272486 original size:42 final size:41
Alignment explanation
Indices: 77272393--77272508 Score: 101
Period size: 42 Copynumber: 2.8 Consensus size: 41
77272383 ATTTGAGATA
* *
77272393 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCAATGATATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCAATGATATT
* * *
77272434 TACGTATAAGACCATGTCTGGGACATC-GGCATCGTAT-CTGATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATC-AATGAT-ATT
* * * *
77272477 TCGTGTAAGACCCTGTCTCGGATAGAGGCATC
1 TCGTGTAAGACCATGTCTGGGACACAGGCATC
77272509 GATATTGAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.02
42 52 0.87
43 7 0.12
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCAATGATATT
Found at i:77279506 original size:19 final size:19
Alignment explanation
Indices: 77279482--77279519 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77279472 GAAATGATAG
77279482 ATAAATGAAAAGTCAAAAT
1 ATAAATGAAAAGTCAAAAT
77279501 ATAAATGAAAAGTCAAAAT
1 ATAAATGAAAAGTCAAAAT
77279520 TCGGGCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (19 bp):
ATAAATGAAAAGTCAAAAT
Found at i:77282639 original size:32 final size:27
Alignment explanation
Indices: 77282581--77282635 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
77282571 AACCAACATG
77282581 AATGTTGCATTGCCTGAAATGAATGAT
1 AATGTTGCATTGCCTGAAATGAATGAT
77282608 AATGTTGCATTGCCTGAAATGAATGAT
1 AATGTTGCATTGCCTGAAATGAATGAT
77282635 A
1 A
77282636 TGATTTTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (27 bp):
AATGTTGCATTGCCTGAAATGAATGAT
Found at i:77295232 original size:25 final size:25
Alignment explanation
Indices: 77295197--77295246 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
77295187 GGGCGTGTGA
77295197 CCTTAACAGTTTTGAAAGATTTGAT
1 CCTTAACAGTTTTGAAAGATTTGAT
*
77295222 CCTTAATAGTTTTGAAAGATTTGAT
1 CCTTAACAGTTTTGAAAGATTTGAT
77295247 TAAGTTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (25 bp):
CCTTAACAGTTTTGAAAGATTTGAT
Found at i:77296039 original size:42 final size:42
Alignment explanation
Indices: 77295988--77296124 Score: 265
Period size: 42 Copynumber: 3.3 Consensus size: 42
77295978 CCTATTTTGC
77295988 CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
1 CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
77296030 CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
1 CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
*
77296072 CACGGGCGTGTCTAATACCGTGTGAGGCACACGGCCTATCCA
1 CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
77296114 CACGGGCGTGT
1 CACGGGCGTGT
77296125 GTCACTTGAA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 94 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (42 bp):
CACGGGCGTGTCTAATGCCGTGTGAGGCACACGGCCTATCCA
Found at i:77305991 original size:11 final size:10
Alignment explanation
Indices: 77305975--77306009 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
77305965 GATGATGAAA
77305975 AAAGAAAAGAG
1 AAAGAAAA-AG
77305986 AAAGAAAAAG
1 AAAGAAAAAG
*
77305996 AAAAAAAAAG
1 AAAGAAAAAG
77306006 AAAG
1 AAAG
77306010 GCTCTCATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:77307319 original size:40 final size:40
Alignment explanation
Indices: 77307264--77307517 Score: 381
Period size: 40 Copynumber: 6.4 Consensus size: 40
77307254 GATGATAACC
* * *
77307264 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
77307304 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
77307344 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
77307384 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
77307424 GGCTAAGTCCCGAAGGCATTGGTGC-AGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
77307463 GGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
77307502 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
77307518 TACTTGGCTT
Statistics
Matches: 201, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 52 0.26
40 149 0.74
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:77313657 original size:40 final size:39
Alignment explanation
Indices: 77313621--77313804 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
77313611 CTACTCGTTT
* *
77313621 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCAC
* * * *
77313661 AAATGTCTTCGGGTCTTAACCCGAATTTAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAACCCG-GTTTAGTAACTCGCAC
* *
77313701 AAATGCCTTCTGGACTTAACCCGGATTTAGTAATTCGCAC
1 AAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCAC
** * * * *
77313741 AAATGCCTTC-GGATCTTAGTCCGCATATAGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAACCCG-GTTTAGTAAC-TCGCAC
*
77313782 AAA-GCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAACCCGG
77313805 ACATCATTCG
Statistics
Matches: 117, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
39 3 0.03
40 101 0.86
41 13 0.11
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCAC
Found at i:77313789 original size:80 final size:81
Alignment explanation
Indices: 77313621--77313805 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 81
77313611 CTACTCGTTT
* * *
77313621 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGTCTTCGGGTCTTAACCCGA
1 AAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
* * *
77313685 ATTTAGTAACTCGTAC
66 ATATAGTAACTAGCAC
* * * ** *
77313701 AAATGCCTTCTGGACTTAACCCGGATT-TAGTAATTCGCACAAATGCCTTCGGATCTTAGTCCGC
1 AAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
*
77313765 ATATAGTCACTTAGCAC
66 ATATAGTAAC-TAGCAC
77313782 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
77313806 CATCATTCGA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 79 0.90
81 9 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (81 bp):
AAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
ATATAGTAACTAGCAC
Found at i:77316761 original size:40 final size:40
Alignment explanation
Indices: 77316706--77316960 Score: 354
Period size: 40 Copynumber: 6.4 Consensus size: 40
77316696 ATGATAACCA
* * * *
77316706 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCG
77316746 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
77316786 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
77316826 GGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
77316866 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * * *
77316906 GGTTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
77316945 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
77316961 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.09
40 181 0.91
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:77322989 original size:23 final size:23
Alignment explanation
Indices: 77322954--77323112 Score: 151
Period size: 23 Copynumber: 6.8 Consensus size: 23
77322944 GACTCACCAT
*
77322954 AGCTC-ATAAGAGCTTACTGTTTC
1 AGCTCAAT-AGAGCTTACCGTTTC
* * *
77322977 AGCTCATTGGAGCTTACCGATTC
1 AGCTCAATAGAGCTTACCGTTTC
* * *
77323000 AGCTCATTGGAGCTTACCGATTC
1 AGCTCAATAGAGCTTACCGTTTC
* *
77323023 AGCTCAAAAGAGCTTACTG-TTC
1 AGCTCAATAGAGCTTACCGTTTC
77323045 AGCTCAATAGAGCTTACCGTTTC
1 AGCTCAATAGAGCTTACCGTTTC
* *
77323068 AGTTCAATAGAGCTTACTGTTTATC
1 AGCTCAATAGAGCTTACCG-TT-TC
* *
77323093 AGCTCAGTAAAAGCTTACCG
1 AGCTCAAT-AGAGCTTACCG
77323113 ACCATAACTC
Statistics
Matches: 115, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
22 20 0.17
23 75 0.65
24 3 0.03
25 8 0.07
26 9 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (23 bp):
AGCTCAATAGAGCTTACCGTTTC
Found at i:77323061 original size:45 final size:45
Alignment explanation
Indices: 77322954--77323088 Score: 164
Period size: 45 Copynumber: 3.0 Consensus size: 45
77322944 GACTCACCAT
* * * *
77322954 AGCTC-ATAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTC
1 AGCTCAAT-AGAGCTTACCGTTTCAGCTCAATAGAGCTTACTG-TTC
* * * *
77323000 AGCTCATTGGAGCTTACCGATTCAGCTCAAAAGAGCTTACTGTTC
1 AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGTTC
*
77323045 AGCTCAATAGAGCTTACCGTTTCAGTTCAATAGAGCTTACTGTT
1 AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGTT
77323089 TATCAGCTCA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
45 42 0.56
46 32 0.43
47 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (45 bp):
AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGTTC
Found at i:77323069 original size:68 final size:69
Alignment explanation
Indices: 77322954--77323084 Score: 192
Period size: 68 Copynumber: 1.9 Consensus size: 69
77322944 GACTCACCAT
* * * * *
77322954 AGCTCATAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTCAGCTCATTGGAGCTTACCG
1 AGCTCAAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTCAGCTCAATAGAGCTTACCG
77323019 ATTC
66 ATTC
* *
77323023 AGCTCAAAAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCGTTTCAGTTCAATAGAGCTTAC
1 AGCTCAAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTCAGCTCAATAGAGCTTAC
77323085 TGTTTATCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
68 37 0.67
69 18 0.33
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (69 bp):
AGCTCAAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATTCAGCTCAATAGAGCTTACCG
ATTC
Found at i:77325168 original size:23 final size:23
Alignment explanation
Indices: 77325142--77325186 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77325132 ATAAGGACTA
*
77325142 AATTGCAT-ATAGAGTAAAAGTTG
1 AATTACATAATAGAG-AAAAGTTG
*
77325165 AATTATATAATAGAGAAAAGTT
1 AATTACATAATAGAGAAAAGTT
77325187 AAGGGACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.49, C:0.02, G:0.18, T:0.31
Consensus pattern (23 bp):
AATTACATAATAGAGAAAAGTTG
Found at i:77325416 original size:13 final size:13
Alignment explanation
Indices: 77325400--77325433 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
77325390 GAAACAGGGG
77325400 AAAGAAA-AAAGAA
1 AAAGAAAGAAA-AA
77325413 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
77325426 AAAGAAAG
1 AAAGAAAG
77325434 GGAACAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 17 0.85
14 3 0.15
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:77326610 original size:25 final size:24
Alignment explanation
Indices: 77326552--77326600 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
77326542 GGGTTCATGG
*
77326552 AATGGTTATTGATATAGTATATGA
1 AATGGTTATTGATATAGTAGATGA
77326576 AATGGTTATTGATATAGTGAGATGA
1 AATGGTTATTGATATAGT-AGATGA
77326601 TATGTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (24 bp):
AATGGTTATTGATATAGTAGATGA
Found at i:77329101 original size:30 final size:30
Alignment explanation
Indices: 77329065--77329125 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
77329055 ACCACAAGTG
**
77329065 ATTAAAAGCACCTAATTCCAACACAGTCTA
1 ATTAAAAGCACAAAATTCCAACACAGTCTA
*
77329095 ATTAAAAGCATAAAATTCCAACACAGTCTA
1 ATTAAAAGCACAAAATTCCAACACAGTCTA
77329125 A
1 A
77329126 GTCCTAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.23, G:0.07, T:0.23
Consensus pattern (30 bp):
ATTAAAAGCACAAAATTCCAACACAGTCTA
Found at i:77332676 original size:2 final size:2
Alignment explanation
Indices: 77332626--77332664 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
77332616 TAACGTATTG
*
77332626 AT AT GAT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77332665 GATAAGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:77334739 original size:29 final size:29
Alignment explanation
Indices: 77334707--77334784 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
77334697 ATACCCTCCG
** *
77334707 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* * *
77334736 AGCTTGCATACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
77334765 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
77334785 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:77341075 original size:29 final size:29
Alignment explanation
Indices: 77341042--77341144 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
77341032 GTGACGAGAT
77341042 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77341071 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
77341100 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
77341129 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
77341145 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77344204 original size:19 final size:20
Alignment explanation
Indices: 77344173--77344210 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
77344163 TTTGTAGTTA
77344173 ATGTGTACATGGTT-TTTTC
1 ATGTGTACATGGTTATTTTC
77344192 ATGTGTA-ATTGGTTATTTT
1 ATGTGTACA-TGGTTATTTT
77344211 ACATTTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 1 0.06
19 12 0.71
20 4 0.24
ACGTcount: A:0.18, C:0.05, G:0.21, T:0.55
Consensus pattern (20 bp):
ATGTGTACATGGTTATTTTC
Found at i:77356074 original size:18 final size:17
Alignment explanation
Indices: 77356051--77356105 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
77356041 AATAACTCAC
*
77356051 TTATTAATCTAATATGAG
1 TTATTAA-CTAAGATGAG
*
77356069 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77356087 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77356105 T
1 T
77356106 AATTTATTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 13 0.42
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77356520 original size:17 final size:17
Alignment explanation
Indices: 77356490--77356544 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77356480 AATAACTCAC
77356490 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77356508 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77356526 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77356544 T
1 T
77356545 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77356647 original size:439 final size:439
Alignment explanation
Indices: 77355829--77360222 Score: 8293
Period size: 439 Copynumber: 10.0 Consensus size: 439
77355819 AATAAACACA
* * *
77355829 TTAAAATGAACTTATTAAACAAAATTAACACTAATTAAACTAAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
* *
77355894 AATAAATGAACTAAAACTTATTCATCAATTATTCTAGTAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77355959 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
*
77356024 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAATATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77356089 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77356154 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
77356219 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77356268 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
* *
77356333 AATAAATGAACTAAAACTTATTAATCAATTATTCTAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77356398 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
77356463 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77356528 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77356593 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
*
77356658 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCGCATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77356707 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77356772 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
*
77356837 TAATTAAACTTAAAATCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
* *
77356902 ATTAAATGAAGTTCAATAATAACTCATTTATTAATCTAATATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
* *
77356967 AATTAACTAAGATGAGTAATTTAGTCAAGCAACTTCATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77357032 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
77357097 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
*
77357146 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACGCATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77357211 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77357276 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
77357341 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77357406 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77357471 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
77357536 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77357585 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
* *
77357650 AATAAATGAACTAAAACTTATTAATCAATTATTCTAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77357715 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
77357780 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77357845 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
*
77357910 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGACAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
*
77357975 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCGCATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77358024 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77358089 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
*
77358154 TAATTAAACTTAAAATCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
* *
77358219 ATTAAATGAAGTTCAATAATAACTCATTTATTAATCTAATATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
* *
77358284 AATTAACTAAGATGAGTAATTTAGTCAAGCAACTTCATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77358349 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
*
77358414 GTTGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77358463 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77358528 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77358593 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
77358658 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77358723 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77358788 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
*
77358853 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCGCATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77358902 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77358967 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
*
77359032 TAATTAAACTTAAAATCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
* *
77359097 ATTAAATGAAGTTCAATAATAACTCATTTATTAATCTAATATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
* *
77359162 AATTAACTAAGATGAGTAATTTAGTCAAGCAACTTCATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
77359227 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
77359292 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
*
77359341 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACGCATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
77359406 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
77359471 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
77359536 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
77359601 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
*
77359666 ATTAACAAACTAAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
* *
77359731 GTCGTCAAGATGTATCGAAACATGATACGACCGGGATCGCATCATCAAT
391 GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
* * *
77359780 TTAAATTGAACTTATTAAACAAAATTAACACTAATAAAACTCAAACGCATTAAACACTTAACTTC
1 TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
* * *
77359845 ACTAAATGAAATAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTAAATGAAACATAAT
66 AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
*
77359910 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAAAATCT
131 TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
*
77359975 ATTAAATGAAGTTCAATAATAACTCATTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
196 ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
* * *
77360040 AATTAACTAAGATGAGTAATTTATTCAAGCAACTCAATTAAAAATAATGTCCAACAACTCAATTT
261 AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
* *
77360105 ATTAACAAAATAAAATTAAACGTCTCATTTTGCACTTGGTCCCCTCGAGTTTAGGCCAATCTCGA
326 ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGG-CCCCTCGAGTTTAGGCCAATCTCGA
* * * * **
77360170 TGTCATCGAGATGTATCAAAACATGATGCGACCAGGATTGCATCATCAAT
390 TGTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
77360220 TTA
1 TTA
77360223 CCAAAATAAC
Statistics
Matches: 3879, Mismatches: 75, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
439 3807 0.98
440 72 0.02
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (439 bp):
TTAAAATGAACTTATTAAACATAATTAACACTAATAAAACTCAAACACATTAAACACTTAACTTC
AATAAATGAACTAAAACTTATTCATCAATTATTCCAGCAACTAGTTTAATTATATGAAACATAAT
TAATTAAACTTAAACTCATGCATCAATAAATTATCCTAGTAACTAGATTAATTAAAGAAACATCT
ATTAAATGAAGTTCAATAATAACTCACTTATTAATCTAAGATGAGTTATTAACTAAGATGAACTC
AATTAACTAAGATGAGTAATTTATTCAAGCAACTTAATTAAAAATAAAGTCCACCAACTCAATTT
ATTAACAAACTGAAATTAAACGTCTCATTTTGCACTTGGCCCCTCGAGTTTAGGCCAATCTCGAT
GTCGTCAAGATGTATCGAAACATGATGCGACCGGGATCACATCATCAAT
Found at i:77356952 original size:18 final size:17
Alignment explanation
Indices: 77356929--77356983 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
77356919 AATAACTCAT
*
77356929 TTATTAATCTAATATGAG
1 TTATTAA-CTAAGATGAG
*
77356947 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77356965 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77356983 T
1 T
77356984 AATTTAGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 13 0.42
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77357398 original size:17 final size:17
Alignment explanation
Indices: 77357368--77357422 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77357358 AATAACTCAC
77357368 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77357386 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77357404 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77357422 T
1 T
77357423 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77357837 original size:17 final size:17
Alignment explanation
Indices: 77357807--77357861 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77357797 AATAACTCAC
77357807 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77357825 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77357843 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77357861 T
1 T
77357862 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77358269 original size:18 final size:17
Alignment explanation
Indices: 77358246--77358300 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
77358236 AATAACTCAT
*
77358246 TTATTAATCTAATATGAG
1 TTATTAA-CTAAGATGAG
*
77358264 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77358282 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77358300 T
1 T
77358301 AATTTAGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 13 0.42
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77358715 original size:17 final size:17
Alignment explanation
Indices: 77358685--77358739 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77358675 AATAACTCAC
77358685 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77358703 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77358721 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77358739 T
1 T
77358740 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77359147 original size:18 final size:17
Alignment explanation
Indices: 77359124--77359178 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
77359114 AATAACTCAT
*
77359124 TTATTAATCTAATATGAG
1 TTATTAA-CTAAGATGAG
*
77359142 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77359160 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77359178 T
1 T
77359179 AATTTAGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 13 0.42
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77359593 original size:17 final size:17
Alignment explanation
Indices: 77359563--77359617 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77359553 AATAACTCAC
77359563 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77359581 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77359599 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77359617 T
1 T
77359618 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77360032 original size:17 final size:17
Alignment explanation
Indices: 77360002--77360056 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
77359992 AATAACTCAT
77360002 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
77360020 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
77360038 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
77360056 T
1 T
77360057 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:77361104 original size:31 final size:31
Alignment explanation
Indices: 77361069--77361128 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
77361059 GATTCAAAGA
*
77361069 TGCTTTCAGACTATCACAGATTTCTTTTAGC
1 TGCTTTCAGACTATCACAGATTACTTTTAGC
77361100 TGCTTTCAGACTATCACAGATTACTTTTA
1 TGCTTTCAGACTATCACAGATTACTTTTA
77361129 CTTTCTCTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (31 bp):
TGCTTTCAGACTATCACAGATTACTTTTAGC
Found at i:77362578 original size:43 final size:42
Alignment explanation
Indices: 77362486--77362580 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
77362476 CTATTTTATG
* * *
77362486 TGTAAGACCATGTATGGGACATTGACATTATATCTGATTTCG
1 TGTAAGACCATGTATGGGACAGTGACATTATATCTGATTACA
* * * * *
77362528 TGTAAGACCTTGTTTGGGACAGTGGCATTGATGTTTGATTACA
1 TGTAAGACCATGTATGGGACAGTGACATT-ATATCTGATTACA
77362571 TGTAAGACCA
1 TGTAAGACCA
77362581 CGTTGGCATT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTATGGGACAGTGACATTATATCTGATTACA
Found at i:77367388 original size:40 final size:39
Alignment explanation
Indices: 77367293--77367420 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
77367283 TGCTGGAAAT
* * * *
77367293 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
* *
77367332 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
77367372 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
77367412 TATATCCGG
1 TATATCCGG
77367421 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.35
40 48 0.62
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:77375288 original size:40 final size:40
Alignment explanation
Indices: 77375222--77375388 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77375212 AAATTGAATG
* * *
77375222 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
77375261 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
77375301 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
77375341 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
77375381 ATATCCGG
1 ATATCCGG
77375389 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77384479 original size:30 final size:29
Alignment explanation
Indices: 77384385--77384486 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
77384375 TATAGTGAAT
* * *
77384385 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
77384414 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
77384442 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
77384472 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77384487 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:77387107 original size:29 final size:29
Alignment explanation
Indices: 77387068--77387127 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
77387058 GGAAGTAGTT
* *
77387068 GGGCCTGATGGGCCATATGAATGTGATTG
1 GGGCCTGATGGGCCATATGAACGAGATTG
*
77387097 GGGCCTGATGGGCCATGTGAACGAGATTG
1 GGGCCTGATGGGCCATATGAACGAGATTG
77387126 GG
1 GG
77387128 CCTAAAGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.20, C:0.15, G:0.42, T:0.23
Consensus pattern (29 bp):
GGGCCTGATGGGCCATATGAACGAGATTG
Found at i:77387477 original size:27 final size:27
Alignment explanation
Indices: 77387447--77387757 Score: 339
Period size: 27 Copynumber: 11.6 Consensus size: 27
77387437 TAATAAAGAG
*
77387447 AAATTACTGAAATACCCTCGATTTGAA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
77387474 AAATTACTG-AATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
77387500 AAATTA-TCGAAACACCCAT-GATTTGTA
1 AAATTACT-GAAATACCC-TCGATTTGTA
* * *
77387527 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
77387553 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
77387580 AAATTACTAAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
77387607 AAATTATTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
77387634 AAATTACCAAAACACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
77387661 AAATTA-TGGAAACACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
77387688 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
77387715 AAATTA-TCGAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
77387742 AAATTACCGAAATACC
1 AAATTACTGAAATACC
77387758 TTTGTAGTGT
Statistics
Matches: 241, Mismatches: 32, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.00
26 47 0.20
27 192 0.80
28 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:77387762 original size:27 final size:27
Alignment explanation
Indices: 77387630--77387772 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
77387620 ACCCTCGATT
* * *
77387630 TGTAAAATTACCAAAACACCCTTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
** * * *
77387657 TGTAAAATTATGGAAACACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
** * *
77387684 TGTAAAATTATTGAAATACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
*
77387711 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
77387738 TGTAAAATTACCGAAATACCTTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
77387765 TGTAAAAT
1 TGTAAAAT
77387773 GACATACATA
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 103 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:77387783 original size:27 final size:27
Alignment explanation
Indices: 77387723--77387802 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
77387713 TAAAATTATC
* *
77387723 GAAATACCCTTGTAGTGTAAAATTACC
1 GAAATACCCTTGTAGTGTAAAATGACA
*
77387750 GAAATACCTTTGTAGTGTAAAATGACA
1 GAAATACCCTTGTAGTGTAAAATGACA
* * * * *
77387777 TACATACCCCTCTAGGGTAAAATGAC
1 GAAATACCCTTGTAGTGTAAAATGAC
77387803 CGTTTTGCCC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (27 bp):
GAAATACCCTTGTAGTGTAAAATGACA
Found at i:77388275 original size:11 final size:11
Alignment explanation
Indices: 77388259--77388284 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
77388249 ATTGCATGTA
77388259 TGATATTATTG
1 TGATATTATTG
77388270 TGATATTATTG
1 TGATATTATTG
77388281 TGAT
1 TGAT
77388285 GTGGGCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:77403699 original size:31 final size:31
Alignment explanation
Indices: 77403659--77403775 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
77403649 TCAATCTCAG
*
77403659 CATAT-ACTGGGCCGAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
77403689 CATGTCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
77403720 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
77403751 CATATCACTGGGCCAAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
77403776 TGCAAACGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 74 0.95
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:77404009 original size:24 final size:23
Alignment explanation
Indices: 77403968--77404039 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
77403958 GCTTTATCAT
**
77403968 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
77403993 ATAACTGAGGCAAAGCCCTTTTTG
1 ATAACTGAGGCAAAGCCC-TTTTA
*
77404017 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
77404040 GGGTAAACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 21 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:77404023 original size:25 final size:25
Alignment explanation
Indices: 77403995--77404065 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
77403985 CTCTTTTAAT
* *
77403995 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
77404020 AACTGGGGCAAAGCCCTTTTGGGTA
1 AACTGGGGCAAAGCCCTTTTGGATA
*
77404045 AACTGGGGCATAGCCCTTTTG
1 AACTGGGGCAAAGCCCTTTTG
77404066 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTGGATA
Found at i:77404040 original size:24 final size:24
Alignment explanation
Indices: 77403982--77404065 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
77403972 CTGGAGGCCT
* *
77403982 AGCCTCTTTTAAT-AACTGAGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
77404006 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTGATAAACTGGGGCAA
* *
77404031 AGCCCTTTTGGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
77404056 AGCCCTTTTG
1 AGCCCTTTTG
77404066 CACTTCCTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 15 0.28
25 37 0.70
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:77408597 original size:40 final size:40
Alignment explanation
Indices: 77408531--77408681 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
77408521 AAATTGAATG
* *
77408531 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAACT
* * ***
77408570 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAACT
* * *
77408610 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAACT
* *
77408650 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
77408682 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAACT
Found at i:77408695 original size:40 final size:40
Alignment explanation
Indices: 77408569--77408697 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
77408559 TGCTGGAAAC
* * * * *
77408569 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGT
* * **
77408609 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGT
*
77408649 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGT
77408689 TATATCCGG
1 TATATCCGG
77408698 TTATATTCCG
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGT
Found at i:77415387 original size:40 final size:40
Alignment explanation
Indices: 77415320--77415463 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
77415310 AAATTGAATG
* * *
77415320 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * * ***
77415360 ATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * * * *
77415400 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
77415440 CTATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
77415464 TTTGTGCACA
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 11 0.13
40 72 0.87
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.20
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:77415484 original size:39 final size:39
Alignment explanation
Indices: 77415359--77415486 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 39
77415349 TGCTGGAAAC
* * * * *
77415359 TATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACC-GAAGGCATTTGTGCGAATGGT
* * **
77415399 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CAT
1 TATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGA-ATGGT
*
77415439 TCTATCCGGGCTAAGACCGAAGGCATTTGTGC-ACATGGT
1 TATATCCGGGCTAAGACCGAAGGCATTTGTGCGA-ATGGT
77415478 TATATCCGG
1 TATATCCGG
77415487 TTATATTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
38 2 0.03
39 24 0.35
40 41 0.59
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCGAAGGCATTTGTGCGAATGGT
Found at i:77422713 original size:40 final size:40
Alignment explanation
Indices: 77422668--77422835 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
77422658 CGGAATATAA
77422668 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77422708 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77422748 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77422788 CCGGATATAATCTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
77422828 CCGGATAT
1 CCGGATAT
77422836 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77422818 original size:80 final size:80
Alignment explanation
Indices: 77422684--77422833 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
77422674 ATAATCACGT
* *
77422684 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATCTCTCGCACGAATGCCTTCGGGAT-TTAGC
77422748 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
77422764 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATCTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATCTCTC-GCACGAA-TGCCTTCGGGATTTAG
77422827 CCCGGAT
64 CCCGGAT
77422834 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATCTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:77427838 original size:43 final size:43
Alignment explanation
Indices: 77427808--77427905 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
77427798 TAGCCCAGCT
77427808 ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAGAA
1 ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAGAA
* * *** * *
77427851 ATGGTCTTACACGTAATCACATAATGGTTCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAGAA
77427894 ATGGTCTTACAC
1 ATGGTCTTACAC
77427906 ATAATCACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACAATGCCAATGTCCCAGAA
Found at i:77427912 original size:86 final size:85
Alignment explanation
Indices: 77427748--77427905 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 85
77427738 TAACTCGTAT
* * * * *
77427748 AATGCCATATCCCAGATATGGTCTTACATGTTATCACATATTGATGCCGATAGCCCAGCTATGGT
1 AATGCCATATCCCAGAAATGGTCTTACACGTAATCACATAATGATGCCAATAGCCCAGCTATGGT
77427813 CTTACACGAAATCAAATAAC
66 CTTACACGAAATCAAATAAC
* * *
77427833 AATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACATAATGGTTCCAAT-GTCCCAGAC-AT
1 AATGCC-ATATCCCAGAAATGGTCTTACACGTAATCACATAATGATGCCAATAG-CCCAG-CTAT
77427896 GGTCTTACAC
63 GGTCTTACAC
77427906 ATAATCACAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 7 0.11
86 54 0.87
87 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (85 bp):
AATGCCATATCCCAGAAATGGTCTTACACGTAATCACATAATGATGCCAATAGCCCAGCTATGGT
CTTACACGAAATCAAATAAC
Found at i:77428944 original size:27 final size:26
Alignment explanation
Indices: 77428897--77428947 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
77428887 CGAGGCTGCC
*
77428897 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
77428923 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
77428948 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:77429215 original size:8 final size:8
Alignment explanation
Indices: 77429202--77429233 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
77429192 TACCAAAGTG
77429202 GGCCCGTT
1 GGCCCGTT
77429210 GGCCCGTT
1 GGCCCGTT
77429218 GGCCCGTT
1 GGCCCGTT
77429226 GGCCCGTT
1 GGCCCGTT
77429234 TTCAGCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.00, C:0.38, G:0.38, T:0.25
Consensus pattern (8 bp):
GGCCCGTT
Found at i:77429760 original size:27 final size:27
Alignment explanation
Indices: 77429608--77429763 Score: 195
Period size: 27 Copynumber: 5.8 Consensus size: 27
77429598 AGGCAAAAAT
* * * *
77429608 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77429635 GATAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77429662 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77429689 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
77429716 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77429743 GGTAATTTTACCTTACAGGGG
1 GGTAATTCTACCCTACAGGGG
77429764 AATGCCATAT
Statistics
Matches: 109, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77429761 original size:54 final size:54
Alignment explanation
Indices: 77429610--77429763 Score: 218
Period size: 54 Copynumber: 2.9 Consensus size: 54
77429600 GCAAAAATGG
* * * * * *
77429610 TAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGAGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
*
77429664 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
* * *
77429718 TAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCTTACAGGGG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGG
77429764 AATGCCATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
Found at i:77431086 original size:40 final size:40
Alignment explanation
Indices: 77431012--77431312 Score: 455
Period size: 40 Copynumber: 7.6 Consensus size: 40
77431002 AACCCAAGTA
* * * *
77431012 CCTTCAGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
77431051 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
77431091 CCTTC-GGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
77431130 CCTTCGGGACTTAGCCCAGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
77431170 CCTTCGGTACTTAGCCTGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
77431210 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
77431250 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
77431290 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77431313 CATTCGAATA
Statistics
Matches: 240, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 45 0.19
40 192 0.80
41 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:77436493 original size:42 final size:41
Alignment explanation
Indices: 77436406--77436557 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 41
77436396 CCAACATCCT
* ***
77436406 AGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACAAAATCAAATA-CGATGCCA-TGTCCC
*
77436449 AGACAGGGTCTTACACAAAATCAAATACGATGCCGATGTCCC
1 AGACATGGTCTTACACAAAATCAAATACGATGCC-ATGTCCC
* * *
77436491 AGACATGGTCTTACACGCAAATCTCAAAT-CGATGCCAACGTCCT
1 AGACATGGTCTTACA--CAAA-ATCAAATACGATGCC-ATGTCCC
* *
77436535 AGACATGGACTTACACGAAATCA
1 AGACATGGTCTTACACAAAATCA
77436558 CATATCAGAA
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.03
42 30 0.33
43 23 0.25
44 30 0.33
45 6 0.07
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (41 bp):
AGACATGGTCTTACACAAAATCAAATACGATGCCATGTCCC
Found at i:77444193 original size:43 final size:43
Alignment explanation
Indices: 77444022--77444193 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
77444012 AGCTTGTACA
* * *
77444022 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
*
77444065 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
** * * * *
77444107 ATGCTGATGT-TCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATC-AAATATCG
* * *
77444150 ATGCCAACATCCCAGATGTGGTCTTACACGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
77444193 A
1 A
77444194 AAATCCTATG
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
41 15 0.15
42 16 0.16
43 55 0.53
44 17 0.17
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:77449722 original size:3 final size:3
Alignment explanation
Indices: 77449708--77449750 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
77449698 CTTTCTTTTG
*
77449708 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
77449751 ATTTTAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:77451845 original size:40 final size:40
Alignment explanation
Indices: 77451790--77452007 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
77451780 TGGATGATAA
* * * *
77451790 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
77451830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
77451870 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
77451910 CTGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
77451950 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
77451990 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77452008 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:77455112 original size:37 final size:37
Alignment explanation
Indices: 77455069--77455160 Score: 139
Period size: 37 Copynumber: 2.5 Consensus size: 37
77455059 GCTCGGACGT
* *
77455069 AATCTCCACACGAATTTATCGAGTCTTACCCGGACAA
1 AATCTCCACACGAAGTCATCGAGTCTTACCCGGACAA
* *
77455106 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGAAGTCATCGAGTCTTACCCGGACAA
*
77455143 AATCTCCACACGTAGTCA
1 AATCTCCACACGAAGTCA
77455161 ACGGGTCTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGAGTCTTACCCGGACAA
Found at i:77455166 original size:37 final size:37
Alignment explanation
Indices: 77455091--77455168 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
77455081 AATTTATCGA
*
77455091 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGTAGTCAACGG
77455128 GTCTTACCCGGACAAAATCTCCACACGTAGTCAACGG
1 GTCTTACCCGGACAAAATCTCCACACGTAGTCAACGG
77455165 GTCT
1 GTCT
77455169 CACTCGGAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGTAGTCAACGG
Found at i:77455391 original size:47 final size:47
Alignment explanation
Indices: 77455339--77455524 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
77455329 TTTCACACTA
* * ** * *
77455339 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
77455386 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
77455433 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
77455480 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
77455525 AGAATCCTAA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:77461009 original size:40 final size:40
Alignment explanation
Indices: 77460960--77461166 Score: 134
Period size: 40 Copynumber: 5.2 Consensus size: 40
77460950 TGGAATTTAA
* * *
77460960 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGC
* * *
77461000 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* ** * * * *
77461040 CCGGATTTAGTAACTCACACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* * * ** *
77461080 CCGGTTTTGGTAACTCGCACAAATGCCTTC-GGAATT-GAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAG-C
* * ** *
77461119 CCGGATTTAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CGAC-TCGCACAATTGCCTTCGGGAATTAGC
77461160 CCGGATA
1 CCGGATA
77461167 CCATTCGAAT
Statistics
Matches: 135, Mismatches: 26, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
39 17 0.13
40 105 0.78
41 12 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:77461098 original size:80 final size:80
Alignment explanation
Indices: 77460986--77461163 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
77460976 GCTCGATTGT
* * * *
77460986 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGAATTGA-CCCGGATTTAG
*
77461050 TAACTCA-CACAAATGC
64 TAACTCAGCACAAAAGC
* * * *
77461066 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGAATTGACCCGGATTTAGTC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGAATTGACCCGGATTTAGTA
*
77461131 ACTTAGCACAAAAGC
66 ACTCAGCACAAAAGC
77461146 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
77461164 ATACCATTCG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 22 0.26
80 63 0.74
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGAATTGACCCGGATTTAGTA
ACTCAGCACAAAAGC
Found at i:77462957 original size:40 final size:40
Alignment explanation
Indices: 77462871--77463182 Score: 453
Period size: 40 Copynumber: 7.8 Consensus size: 40
77462861 CAAGCATGAT
* * * * ** *
77462871 TGCTCTTTGGGACCTAGCCCGGATATAACACCGGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * * *
77462911 TTCTCTTCGGGGTTTAGCACGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
77462951 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
77462991 TGCTCTTCGAGACTTAGCCCGGATCCATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
77463031 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
77463071 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
77463111 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
77463151 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
77463183 CTCAATTCTC
Statistics
Matches: 244, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 244 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:77464494 original size:37 final size:37
Alignment explanation
Indices: 77464451--77464558 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
77464441 GCTCGGACGT
* * *
77464451 AATCTCCACACGAAGTTATCGAGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
77464488 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
77464525 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
77464559 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:77464819 original size:47 final size:47
Alignment explanation
Indices: 77464721--77464905 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
77464711 TTTCACACTA
* * * * *
77464721 GCCATTCGGCTTTACCACATATATGCAT-TTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
77464767 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
77464814 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
77464861 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
77464906 AGAATCCTAA
Statistics
Matches: 127, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 25 0.20
47 102 0.80
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:77475376 original size:55 final size:55
Alignment explanation
Indices: 77475297--77475431 Score: 153
Period size: 55 Copynumber: 2.5 Consensus size: 55
77475287 CGACATGGCC
* * ** * * *
77475297 GTGGGCGAACCTGCCAAAACAACACTGGCGTGCGACACGCCCGTGCCTTGAACCT
1 GTGGCCGAACCTGTCAAATTAACACAGGCATGCGACACGCCCGTGCCTAGAACCT
* * *
77475352 GTGGCCGAACCTGTCAAATTAACACAGGCATGCGACACGCTCGTGTCTAGCACCT
1 GTGGCCGAACCTGTCAAATTAACACAGGCATGCGACACGCCCGTGCCTAGAACCT
* * *
77475407 GTGGTCGAACCTATTAAATTAACAC
1 GTGGCCGAACCTGTCAAATTAACAC
77475432 GGGTATGGGC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (55 bp):
GTGGCCGAACCTGTCAAATTAACACAGGCATGCGACACGCCCGTGCCTAGAACCT
Found at i:77488694 original size:51 final size:46
Alignment explanation
Indices: 77488605--77488710 Score: 131
Period size: 51 Copynumber: 2.2 Consensus size: 46
77488595 GACAGGACAG
* * *
77488605 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
*
77488651 GACAGGAATGAGCCATGTAAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGT-AAGCCCATATCAG----ATATATGGCATTGGA
77488702 GACAGGAAT
1 GACAGGAAT
77488711 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
46 17 0.33
47 11 0.22
51 23 0.45
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
Found at i:77493171 original size:41 final size:41
Alignment explanation
Indices: 77493126--77493243 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77493116 TGAAAGATAA
77493126 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77493167 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77493197 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77493238 ATGTAG
1 ATGTAG
77493244 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77493182 original size:71 final size:71
Alignment explanation
Indices: 77493094--77493257 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77493084 GAGATGTATC
77493094 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77493159 AGGACA
66 AGGACA
77493165 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77493230 AGGACA
66 AGGACA
77493236 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77493258 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77500748 original size:41 final size:41
Alignment explanation
Indices: 77500703--77500820 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
77500693 TGAAAGATAA
77500703 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
77500744 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77500774 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
77500815 ATGTAG
1 ATGTAG
77500821 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:77500759 original size:71 final size:71
Alignment explanation
Indices: 77500671--77500834 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77500661 GAGATGTATC
77500671 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77500736 AGGACA
66 AGGACA
77500742 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
77500807 AGGACA
66 AGGACA
77500813 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
77500835 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:77505482 original size:39 final size:40
Alignment explanation
Indices: 77505405--77505483 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 40
77505395 TAAGACCATG
* * *
77505405 TCTGGGACATGCCATCGGTATTGAGATGAGAGCTAGTGTA
1 TCTGGGACATGCCATCGGCATCGAGATGAGAGCCAGTGTA
*
77505445 TCTGGGACATG-CATCGGCCTCGAGATGTA-AGCCAGTGTA
1 TCTGGGACATGCCATCGGCATCGAGATG-AGAGCCAGTGTA
77505484 AGACCATGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 22 0.65
40 12 0.35
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (40 bp):
TCTGGGACATGCCATCGGCATCGAGATGAGAGCCAGTGTA
Found at i:77513694 original size:18 final size:20
Alignment explanation
Indices: 77513671--77513710 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
77513661 GAGGTGGAAA
77513671 TTTTTC-TAT-CACTTCAAT
1 TTTTTCTTATCCACTTCAAT
77513689 TTTTTCTTTATCCACTTCAAT
1 TTTTTC-TTATCCACTTCAAT
77513710 T
1 T
77513711 CATCTATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.20, C:0.23, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTCTTATCCACTTCAAT
Found at i:77521073 original size:33 final size:33
Alignment explanation
Indices: 77521031--77521097 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
77521021 CACATTGGAC
77521031 TAGGATGTGTATTGATACAAGAAAGAAAGGTGG
1 TAGGATGTGTATTGATACAAGAAAGAAAGGTGG
77521064 TAGGATGTGTATTGATACAAGAAAGAAAGGTGG
1 TAGGATGTGTATTGATACAAGAAAGAAAGGTGG
77521097 T
1 T
77521098 TGCTTATGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.03, G:0.33, T:0.25
Consensus pattern (33 bp):
TAGGATGTGTATTGATACAAGAAAGAAAGGTGG
Found at i:77530337 original size:40 final size:40
Alignment explanation
Indices: 77530292--77530483 Score: 312
Period size: 40 Copynumber: 4.8 Consensus size: 40
77530282 GAGAATTGAG
77530292 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
77530332 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
77530372 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
77530412 AGTGATGCAACCGAACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
77530452 AGTGATGTATCTGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
77530484 ATCATGCTGG
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:77544592 original size:18 final size:18
Alignment explanation
Indices: 77544571--77544606 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77544561 GAGTGTGAGC
77544571 CCACATGGGCATGTGGGA
1 CCACATGGGCATGTGGGA
* *
77544589 CCACATGTGCGTGTGGGA
1 CCACATGGGCATGTGGGA
77544607 TTTTGGGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.39, T:0.19
Consensus pattern (18 bp):
CCACATGGGCATGTGGGA
Found at i:77554401 original size:46 final size:46
Alignment explanation
Indices: 77554348--77554523 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
77554338 TATTTGGGCA
77554348 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
* * * *
77554394 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT---GA-GCG
* * * *
77554441 TCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
* * *
77554487 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77554524 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 2 0.02
46 65 0.60
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
Found at i:77554503 original size:93 final size:93
Alignment explanation
Indices: 77554344--77554516 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
77554334 GGGATATTTG
* * * *
77554344 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77554409 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
77554437 GGCATCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
77554502 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
77554517 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:77564885 original size:29 final size:29
Alignment explanation
Indices: 77564857--77564958 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
77564847 CCTCCGAGCT
** * * *
77564857 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
77564886 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
77564915 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
77564944 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
77564959 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:77568372 original size:14 final size:14
Alignment explanation
Indices: 77568353--77568379 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77568343 TATCTTGGGT
77568353 TTCTTTATTCTGGA
1 TTCTTTATTCTGGA
77568367 TTCTTTATTCTGG
1 TTCTTTATTCTGG
77568380 GTTTTTCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (14 bp):
TTCTTTATTCTGGA
Found at i:77568401 original size:28 final size:29
Alignment explanation
Indices: 77568348--77568413 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
77568338 TATCGTATCT
77568348 TGGGTTTCTTTATTCTGGATTCTTTATTC
1 TGGGTTTCTTTATTCTGGATTCTTTATTC
* *
77568377 TGGGTTT-TTCTA-TCTTGATTTTTTATTC
1 TGGGTTTCTT-TATTCTGGATTCTTTATTC
*
77568405 -GGTTTTCTT
1 TGGGTTTCTT
77568414 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.16
28 18 0.56
29 9 0.28
ACGTcount: A:0.09, C:0.12, G:0.17, T:0.62
Consensus pattern (29 bp):
TGGGTTTCTTTATTCTGGATTCTTTATTC
Found at i:77570621 original size:26 final size:26
Alignment explanation
Indices: 77570592--77570672 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
77570582 GTGATCACGT
77570592 GTGTAGTACTAAGTGCAGGCTACTAG
1 GTGTAGTACTAAGTGCAGGCTACTAG
* * *
77570618 GTGTATTA-GATGGTG-AGG-T-C-ACG
1 GTGTAGTACTA-AGTGCAGGCTACTA-G
*
77570641 TGTGTAGTACTAAGTGCAGGCTACTAC
1 -GTGTAGTACTAAGTGCAGGCTACTAG
77570668 GTGTA
1 GTGTA
77570673 CCAGACTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 16
0.63 0.11 0.25
Matches are distributed among these distances:
22 1 0.03
23 2 0.05
24 11 0.28
25 8 0.20
26 16 0.40
27 1 0.03
28 1 0.03
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGCTACTAG
Found at i:77570661 original size:50 final size:49
Alignment explanation
Indices: 77570540--77570726 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
77570530 TGAGGTCGCA
* * * *
77570540 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* **
77570591 TGTGTAGTACTAAGTGCAGGCTACTAGGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
77570641 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
77570690 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
77570727 TAGCTTTGAC
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 42 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:77574596 original size:23 final size:23
Alignment explanation
Indices: 77574540--77574597 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
77574530 AGGGTATACT
77574540 TGGTTGTGTTCGAAGGTTACATA
1 TGGTTGTGTTCGAAGGTTACATA
* *
77574563 TAGGGTTGTGTTCGGTAGG-TGCATA
1 T--GGTTGTGTTC-GAAGGTTACATA
77574588 TGGTTGTGTT
1 TGGTTGTGTT
77574598 TGGAGGGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 10 0.33
25 16 0.53
26 4 0.13
ACGTcount: A:0.16, C:0.07, G:0.36, T:0.41
Consensus pattern (23 bp):
TGGTTGTGTTCGAAGGTTACATA
Found at i:77574644 original size:23 final size:22
Alignment explanation
Indices: 77574588--77574645 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
77574578 TAGGTGCATA
77574588 TGGTTGTGTTTGGAGGGTAAAT
1 TGGTTGTGTTTGGAGGGTAAAT
* * * **
77574610 TAGTTGTCTTTGTAGGGTATGTT
1 TGGTTGTGTTTGGAGGGTA-AAT
77574633 TGGTTGTGTTTGG
1 TGGTTGTGTTTGG
77574646 TGGGCTATAG
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.12, C:0.02, G:0.38, T:0.48
Consensus pattern (22 bp):
TGGTTGTGTTTGGAGGGTAAAT
Found at i:77575466 original size:12 final size:13
Alignment explanation
Indices: 77575446--77575486 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
77575436 GATAAAATGG
*
77575446 TTTCCAATAT-CC
1 TTTCAAATATACC
77575458 TTTCAAATATAGCC
1 TTTCAAATATA-CC
77575472 TTTCAAA-ATACC
1 TTTCAAATATACC
77575484 TTT
1 TTT
77575487 TTGCTTGCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.54
13 3 0.12
14 9 0.35
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.41
Consensus pattern (13 bp):
TTTCAAATATACC
Found at i:77581218 original size:46 final size:45
Alignment explanation
Indices: 77581151--77581283 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 45
77581141 AGCTTGTATA
* *
77581151 TCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
1 TCTCAATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
* * *
77581196 GTCTCAATGTCGATGCGTGTCCCAGACATGTCTTAGACTGGCTCTC
1 -TCTCAATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
*
77581242 -AT-AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 TCTCAATGT---CGATGCATGTCCCAGACATGTCTTACACTAGC
77581284 ACACATATCA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.07
44 1 0.01
46 69 0.92
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
TCTCAATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
Found at i:77584484 original size:29 final size:29
Alignment explanation
Indices: 77584451--77584513 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
77584441 GTGACAGAGT
* *
77584451 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGAAACAGATAATTTGTGGCA-TAGC
77584480 CACCA-AAACAGATAATTTGTGGCATAGC
1 CACCAGAAACAGATAATTTGTGGCATAGC
77584508 CACCAG
1 CACCAG
77584514 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 24 0.80
29 5 0.17
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (29 bp):
CACCAGAAACAGATAATTTGTGGCATAGC
Found at i:77584666 original size:28 final size:28
Alignment explanation
Indices: 77584619--77584683 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
77584609 AAATTAACCC
*
77584619 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
77584647 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
77584675 TAGGGGTAT
1 TAGGGGTAT
77584684 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:77595696 original size:43 final size:42
Alignment explanation
Indices: 77595635--77595744 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
77595625 CAATACTAAC
**
77595635 GTCCCAGAC-GTGGTCTTACATGTAATACAG-TATCGATCCCTTT
1 GTCCCAGACAG-GGTCTTACATGTAAT-CAGATA-CGATCCCAGT
*** *
77595678 GTCCCAGACAGGGTCTTACACAAAATCAGATACGATGCCAGT
1 GTCCCAGACAGGGTCTTACATGTAATCAGATACGATCCCAGT
*
77595720 GTCCCAGACATGGTCTTACATGTAA
1 GTCCCAGACAGGGTCTTACATGTAA
77595745 ATCTCAAATC
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 31 0.56
43 23 0.42
44 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGTAATCAGATACGATCCCAGT
Found at i:77599700 original size:49 final size:49
Alignment explanation
Indices: 77599641--77599760 Score: 161
Period size: 49 Copynumber: 2.4 Consensus size: 49
77599631 CAATGTCATG
* *
77599641 CCCAGACAGGTCTTACTCTGACTTTCATATATCGAG-GCCGATGCCGTGT
1 CCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGCCGATGCCGTGT
* * * *
77599690 CCGAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCGTGT
1 CCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCGATGCCGTGT
*
77599739 CCCAGGCAGGTCTTACACTGAC
1 CCCAGACAGGTCTTACACTGAC
77599761 ACACAACAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 2 0.03
49 59 0.97
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (49 bp):
CCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCGATGCCGTGT
Found at i:77599862 original size:49 final size:46
Alignment explanation
Indices: 77599778--77599881 Score: 120
Period size: 49 Copynumber: 2.2 Consensus size: 46
77599768 AATCTGACGC
* *
77599778 CATGTCCCAGACAGGTCTTACACTAGTTTCTATAATCTCGAGGCTGATG
1 CATGTCCCAGACAGGTCTTACACTAGTCTCTATAATCT---GGCCGATG
* * *
77599827 CATGTCCCAGACATGTCTTAGACT-GGCTCTCATAATCTGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTAGTCTCT-ATAATCTGGCCGATG
77599873 CATGTCCCA
1 CATGTCCCA
77599882 TTGTCATGGC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
46 16 0.33
48 4 0.08
49 29 0.59
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACAGGTCTTACACTAGTCTCTATAATCTGGCCGATG
Found at i:77600555 original size:20 final size:18
Alignment explanation
Indices: 77600518--77600568 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
77600508 CTATAGCAAC
77600518 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
77600535 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
77600555 TTACAACTTTACAA
1 TCACAA-TTTACAA
77600569 GATAGCCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:77601377 original size:25 final size:26
Alignment explanation
Indices: 77601280--77601377 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
77601270 GAGGAAGTGC
**
77601280 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
77601306 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
77601332 AAAAGGGCTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
77601358 AAAAGGGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
77601378 ATTAAAAGAG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 10 0.14
26 59 0.86
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:77601570 original size:42 final size:42
Alignment explanation
Indices: 77601523--77601614 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
77601513 TAGTCTCCCA
** ** *
77601523 AAATGGGCTTGCATACATTTATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
77601565 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
77601607 AAATGGGC
1 AAATGGGC
77601615 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:77601676 original size:31 final size:31
Alignment explanation
Indices: 77601638--77601716 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
77601628 CGTTTACAGT
*
77601638 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
77601669 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
77601700 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
77601717 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:77603570 original size:20 final size:20
Alignment explanation
Indices: 77603545--77603596 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
77603535 CGGGTAGAGG
*
77603545 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCATGTCCCAAAGC
*
77603565 ACACGGGCATGTCCTAAAGC
1 ACACGGGCATGTCCCAAAGC
77603585 ACACGGGCATGT
1 ACACGGGCATGT
77603597 GCTATCTCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.31, G:0.29, T:0.13
Consensus pattern (20 bp):
ACACGGGCATGTCCCAAAGC
Found at i:77608052 original size:40 final size:39
Alignment explanation
Indices: 77607887--77608070 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77607877 AAATTGAATG
* * *
77607887 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77607927 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77607967 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77608007 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77608046 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77608071 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77608095 original size:80 final size:81
Alignment explanation
Indices: 77607927--77608115 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77607917 GCTGGAAATT
* * * *
77607927 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77607992 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77608008 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77608071 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77608087 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77608116 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77610965 original size:27 final size:28
Alignment explanation
Indices: 77610914--77610975 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
77610904 TCGCACACCC
* * **
77610914 AGTGCCGTATTTTTCCAGCTTG-CACTT
1 AGTGCCATATATTTCCAGCACGACACTT
77610941 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACG-ACACTT
77610970 AGTGCC
1 AGTGCC
77610976 GATCTCGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 18 0.62
29 11 0.38
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (28 bp):
AGTGCCATATATTTCCAGCACGACACTT
Found at i:77614693 original size:40 final size:40
Alignment explanation
Indices: 77614648--77614814 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77614638 CGGAATATAA
77614648 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77614688 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77614728 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77614768 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77614807 CCGGATAT
1 CCGGATAT
77614815 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77621976 original size:29 final size:29
Alignment explanation
Indices: 77621944--77622021 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
77621934 ATACCCTCCG
** *
77621944 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
77621973 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
77622002 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
77622022 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:77625180 original size:18 final size:18
Alignment explanation
Indices: 77625154--77625194 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
77625144 TGATAGATCC
*
77625154 AAGGGTATTCTTTGTTAG
1 AAGGATATTCTTTGTTAG
77625172 AAGGATATTCTTTGTTAG
1 AAGGATATTCTTTGTTAG
77625190 AAGGA
1 AAGGA
77625195 ATGCCTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.39
Consensus pattern (18 bp):
AAGGATATTCTTTGTTAG
Found at i:77625256 original size:14 final size:15
Alignment explanation
Indices: 77625233--77625270 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
77625223 CTTGTAGAAA
77625233 TTAAATTAAACTAAT
1 TTAAATTAAACTAAT
77625248 TTAAA-TAAACTAA-
1 TTAAATTAAACTAAT
*
77625261 TGAAATTAAA
1 TTAAATTAAA
77625271 TAAAATAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 4 0.19
14 12 0.57
15 5 0.24
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (15 bp):
TTAAATTAAACTAAT
Done.