Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 262 of 345
Found at i:77626934 original size:46 final size:46
Alignment explanation
Indices: 77626867--77626959 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
77626857 TGGGCCGATG
77626867 TAAGAAAATTCGTCTGTATGCTAAATTCTTGAACATACAAATTTCA
1 TAAGAAAATTCGTCTGTATGCTAAATTCTTGAACATACAAATTTCA
77626913 TAAGAAAATTCGTCTGTATGCTAAATTCTTGAACATACAAATTTCA
1 TAAGAAAATTCGTCTGTATGCTAAATTCTTGAACATACAAATTTCA
77626959 T
1 T
77626960 CCATAATTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (46 bp):
TAAGAAAATTCGTCTGTATGCTAAATTCTTGAACATACAAATTTCA
Found at i:77628266 original size:19 final size:19
Alignment explanation
Indices: 77628242--77628279 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
77628232 GGAGTCTGCT
*
77628242 CATTTCTTTGTACATCTTA
1 CATTTCTTTATACATCTTA
77628261 CATTTCTTTATACATCTTA
1 CATTTCTTTATACATCTTA
77628280 GTGTTTTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.03, T:0.53
Consensus pattern (19 bp):
CATTTCTTTATACATCTTA
Found at i:77633687 original size:10 final size:10
Alignment explanation
Indices: 77633672--77633698 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
77633662 TAAGTTGAAG
77633672 TTGAGCTGAT
1 TTGAGCTGAT
77633682 TTGAGCTGAT
1 TTGAGCTGAT
77633692 TTGAGCT
1 TTGAGCT
77633699 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:77636088 original size:14 final size:16
Alignment explanation
Indices: 77636064--77636096 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
77636054 ATTTTCTATG
77636064 TTTATTATGTGT-AAA
1 TTTATTATGTGTGAAA
77636079 TTTA-TATGTGTGAAA
1 TTTATTATGTGTGAAA
77636094 TTT
1 TTT
77636097 TTGTGATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGAAA
Found at i:77641764 original size:30 final size:30
Alignment explanation
Indices: 77641730--77641790 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
77641720 TCCTTAACTC
77641730 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
77641760 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
77641790 A
1 A
77641791 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:77647661 original size:134 final size:134
Alignment explanation
Indices: 77647387--77647833 Score: 589
Period size: 134 Copynumber: 3.3 Consensus size: 134
77647377 AAGTACTCTC
* * *
77647387 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTTGATTTACAAA
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTAC-AA
* * * * * *
77647451 ATTACCGTTTTACCCTCAGGTTATAGAATTACCGTTTTACCCTTGATTTGTAAAATTACCGTTTT
64 ATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTT
77647516 A-CCCT
129 ACCCCT
*
77647521 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACTCTCGATTTACAA
1 -GATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGATTTACAA
* *
77647585 ATTATCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTT
64 ATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTT
77647650 ACCCCT
129 ACCCCT
* * * * *
77647656 AATTTACATAATTACCATTTTACCC-CGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-ATTTTACCCTCGATTTACA-A
* * *
77647719 ATTACCGTTTCACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTT
64 ATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTT
*
77647784 ACCCTT
129 ACCCCT
* * *
77647790 GATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTA
77647834 AAATACCCTT
Statistics
Matches: 276, Mismatches: 30, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
132 1 0.00
133 29 0.11
134 170 0.62
135 75 0.27
136 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (134 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAT
TACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
CCCT
Found at i:77647832 original size:27 final size:27
Alignment explanation
Indices: 77647384--77647831 Score: 523
Period size: 27 Copynumber: 16.7 Consensus size: 27
77647374 CCAAAGTACT
77647384 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
77647411 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
77647438 CTTGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
77647465 CTC-AGGTTATAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* ** *
77647492 CTTGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
77647519 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
77647546 CTC-AGTTTACAGAATTACTATTTTACT
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
77647573 CTCGATTTACA-AATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
77647599 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
77647626 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
77647653 C-CTAATTTACATAATTACCATTTTACC
1 CTC-GATTTACAGAATTACCGTTTTACC
* *
77647680 C-CGATTTACATAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77647706 CTCGATTTACAGAATTACCGTTTCACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
77647733 CTCAATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
77647760 CTCGATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
77647787 CTTGATTTACAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77647814 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
77647832 TAAAATACCC
Statistics
Matches: 358, Mismatches: 52, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 46 0.13
27 307 0.86
28 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:77649196 original size:20 final size:20
Alignment explanation
Indices: 77649136--77649196 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
77649126 AGAAATATGG
*
77649136 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
77649156 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77649176 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
77649196 T
1 T
77649197 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:77649273 original size:24 final size:24
Alignment explanation
Indices: 77649246--77649388 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
77649236 GAGGAAGTGA
77649246 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
77649270 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
77649294 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
77649317 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
77649341 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
77649365 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77649389 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:77649339 original size:47 final size:47
Alignment explanation
Indices: 77649246--77649388 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
77649236 GAGGAAGTGA
77649246 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
77649294 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
77649341 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
77649389 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:77649362 original size:71 final size:72
Alignment explanation
Indices: 77649246--77649389 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
77649236 GAGGAAGTGA
*
77649246 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
77649309 CCAGTTAT
65 CCAGTTAT
** * *
77649317 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
77649382 CAGTTAT
66 CAGTTAT
77649389 A
1 A
77649390 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:77657003 original size:124 final size:124
Alignment explanation
Indices: 77656781--77657005 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
77656771 GAATTATGTG
* * * * * * * *
77656781 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
* **
77656846 GCTAAGTCCCAAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCAAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
77656905 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCAG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
* *
77656970 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCAAAGACGATTA-TGCTAGAAATTATAT
77657006 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 3 0.03
124 83 0.97
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCAG
GCTAAGTCCCAAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:77657127 original size:40 final size:40
Alignment explanation
Indices: 77657000--77657129 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
77656990 TTGCTGGAAA
* * * *
77657000 TTATATCCGGGTTAAGACCCGAAGACAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
77657040 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
77657080 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
77657120 TTATATCCGG
1 TTATATCCGG
77657130 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:77659988 original size:26 final size:28
Alignment explanation
Indices: 77659959--77660027 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
77659949 AACCTTAAGA
*
77659959 GTATATTGGTCATTTT-GC-ACCTAGGG
1 GTATATTGGTCATTTTCCCTACCTAGGG
* * *
77659985 GTATAATGGTAATTTTCCCTACTTAGGG
1 GTATATTGGTCATTTTCCCTACCTAGGG
* *
77660013 GTATTTTAGTCATTT
1 GTATATTGGTCATTT
77660028 CAACAATTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
26 14 0.42
27 1 0.03
28 18 0.55
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (28 bp):
GTATATTGGTCATTTTCCCTACCTAGGG
Found at i:77663629 original size:142 final size:142
Alignment explanation
Indices: 77663461--77663743 Score: 503
Period size: 142 Copynumber: 2.0 Consensus size: 142
77663451 TATTGTGACG
*
77663461 AAGTCACTAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
1 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
*** * *
77663526 ACCAGATTGCAGTGGGGCTGCCAGATATTGTGACGAAGTCACAATAATAGATATATGTGGCGAGG
66 ACCAGATTGCAGCAAGGCTGCCAAATATTGTGACGAAGTCACAATAACAGATATATGTGGCGAGG
*
77663591 CCACCAGATTGC
131 CCACCAAATTGC
77663603 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
1 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
77663668 ACCAGATTGCAGCAAGGCTGCCAAATATTGTGACGAAGTCACAATAACAGATATATGTGGCGAGG
66 ACCAGATTGCAGCAAGGCTGCCAAATATTGTGACGAAGTCACAATAACAGATATATGTGGCGAGG
77663733 CCACCAAATTG
131 CCACCAAATTG
77663744 TAGCAAGGCT
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 134 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.21
Consensus pattern (142 bp):
AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
ACCAGATTGCAGCAAGGCTGCCAAATATTGTGACGAAGTCACAATAACAGATATATGTGGCGAGG
CCACCAAATTGC
Found at i:77663672 original size:75 final size:75
Alignment explanation
Indices: 77663461--77663678 Score: 247
Period size: 75 Copynumber: 3.0 Consensus size: 75
77663451 TATTGTGACG
*
77663461 AAGTCACTAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
1 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
77663526 ACCAGATTGC
66 ACCAGATTGC
*** * * * * * * * * *
77663536 -AGT--GGGGCTGCCAGATATTGTGACGAAGTCA-CA-A-TA-ATAGAT--ATATGTGGCGAGGC
1 AAGTCACCAGAT-ACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGC
77663592 CACCAGATTGC
65 CACCAGATTGC
77663603 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
1 AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
77663668 ACCAGATTGC
66 ACCAGATTGC
77663678 A
1 A
77663679 GCAAGGCTGC
Statistics
Matches: 109, Mismatches: 24, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
67 24 0.22
68 3 0.03
69 21 0.19
70 5 0.05
71 2 0.02
72 5 0.05
73 21 0.19
74 3 0.03
75 25 0.23
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (75 bp):
AAGTCACCAGATACAGATATTGTGGCTAGGCCACCAGAGCAGATATATACATATGTGGCGAAGCC
ACCAGATTGC
Found at i:77663898 original size:26 final size:28
Alignment explanation
Indices: 77663868--77663938 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
77663858 TTAACCTTAA
*
77663868 GGGTATATTGGTCATTTT-GC-ACCTAG
1 GGGTATATTGGTCATTTTCCCTACCTAG
* * *
77663894 GGGTATAATGGTAATTTTCCCTACTTAG
1 GGGTATATTGGTCATTTTCCCTACCTAG
* *
77663922 GGGTATTTTAGTCATTT
1 GGGTATATTGGTCATTT
77663939 CAACAATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 16 0.46
27 1 0.03
28 18 0.51
ACGTcount: A:0.21, C:0.13, G:0.24, T:0.42
Consensus pattern (28 bp):
GGGTATATTGGTCATTTTCCCTACCTAG
Found at i:77667419 original size:13 final size:13
Alignment explanation
Indices: 77667401--77667425 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77667391 TGTTGGTTCA
77667401 CACGGTCGTGTCG
1 CACGGTCGTGTCG
77667414 CACGGTCGTGTC
1 CACGGTCGTGTC
77667426 TGTCATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:77671650 original size:29 final size:29
Alignment explanation
Indices: 77671617--77671691 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
77671607 CGGTGACGAG
77671617 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
*
77671646 ATGGCACTAAGTGTGCATGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
77671675 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
77671692 AGCTCGAAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:77671707 original size:29 final size:29
Alignment explanation
Indices: 77671617--77671751 Score: 130
Period size: 29 Copynumber: 4.6 Consensus size: 29
77671607 CGGTGACGAG
* *
77671617 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGAGCTGGAAATAC
*
77671646 ATGGCACTAAGTGTGC-ATGCTGGAAATAT
1 ATGGCACTAAGTGTGCGA-GCTGGAAATAC
* ***
77671675 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTGGAAATAC
* * * *
77671704 ATGGCACTATGTGTGCGGCGCT-TAAATCGC
1 ATGGCACTAAGTGTGC-GAGCTGGAAAT-AC
77671734 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
77671752 AATCGAGTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
29 67 0.75
30 22 0.25
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTGGAAATAC
Found at i:77675184 original size:40 final size:40
Alignment explanation
Indices: 77675139--77675305 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77675129 CGGAATATAA
77675139 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77675179 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77675219 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77675259 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77675298 CCGGATAT
1 CCGGATAT
77675306 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77683161 original size:40 final size:40
Alignment explanation
Indices: 77683116--77683282 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77683106 CGGAATATAA
77683116 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77683156 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77683196 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77683236 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77683275 CCGGATAT
1 CCGGATAT
77683283 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77686845 original size:23 final size:23
Alignment explanation
Indices: 77686759--77686917 Score: 139
Period size: 23 Copynumber: 6.9 Consensus size: 23
77686749 ACAGCTCGGA
* * *
77686759 AGAGCTTATTATTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
*
77686782 GGAGCTTACTGATTT-AGCTCGAA-
1 AGAGCTTACTG-TTTCAGCTC-AAT
*
77686805 AGATCTTACTG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* **
77686827 AGAGCTTACCGTTTCAGCT-TTT
1 AGAGCTTACTGTTTCAGCTCAAT
*
77686849 ATGAGCTTACTGTTT-AGCTCGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
77686872 AGAGCTCACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
77686895 AGAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
77686918 GGAGGAGCTT
Statistics
Matches: 108, Mismatches: 18, Indels: 18
0.75 0.12 0.12
Matches are distributed among these distances:
21 4 0.04
22 31 0.29
23 61 0.56
24 4 0.04
25 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:77686858 original size:45 final size:45
Alignment explanation
Indices: 77686809--77686909 Score: 141
Period size: 45 Copynumber: 2.2 Consensus size: 45
77686799 CTCGAAAGAT
* **
77686809 CTTACTGTTCAGCTCAATAGAGCTTACCGTTTCAGCT-TTTATGAG
1 CTTACTGTTCAGCTCAATAGAGCTCACCGTTTCAGCTCAATA-GAG
* *
77686854 CTTACTGTTTAGCTCGATAGAGCTCACCGTTTCAGCTCAATAGAG
1 CTTACTGTTCAGCTCAATAGAGCTCACCGTTTCAGCTCAATAGAG
77686899 CTTACTGTTCA
1 CTTACTGTTCA
77686910 TCAGCTCAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 47 0.96
46 2 0.04
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (45 bp):
CTTACTGTTCAGCTCAATAGAGCTCACCGTTTCAGCTCAATAGAG
Found at i:77687853 original size:13 final size:13
Alignment explanation
Indices: 77687832--77687865 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
77687822 GTGTGCGACA
77687832 CACGGTCATATTG
1 CACGGTCATATTG
*
77687845 CAGGGTCATATTG
1 CACGGTCATATTG
77687858 CACGGTCA
1 CACGGTCA
77687866 ATCTTGATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (13 bp):
CACGGTCATATTG
Found at i:77693450 original size:10 final size:10
Alignment explanation
Indices: 77693435--77693477 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
77693425 ACTCACCATT
77693435 CCAAATCATA
1 CCAAATCATA
77693445 CCAAATCATGA
1 CCAAATCAT-A
77693456 GCCAAAATCATA
1 -CC-AAATCATA
*
77693468 CCAAAACATA
1 CCAAATCATA
77693478 TGATACACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 16 0.55
11 3 0.10
12 3 0.10
13 7 0.24
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (10 bp):
CCAAATCATA
Found at i:77694298 original size:42 final size:43
Alignment explanation
Indices: 77694207--77694316 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 43
77694197 AATTCCAACA
*
77694207 TCCCAGAC-GTGGTCTTACAAGTAAACAAATATCGATGCCACTG
1 TCCCAGACAG-GGTCTTACACGTAAACAAATATCGATGCCACTG
*
77694250 TCCCAGATAGGGTCTTACACG-AAACCAAATA-CGATGCCGA-TG
1 TCCCAGACAGGGTCTTACACGTAAA-CAAATATCGATGCC-ACTG
* *
77694292 TCCCAGACATGGTCTTACACATAAA
1 TCCCAGACAGGGTCTTACACGTAAA
77694317 TCATAAGTCG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
42 30 0.52
43 27 0.47
44 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACGTAAACAAATATCGATGCCACTG
Found at i:77694431 original size:12 final size:12
Alignment explanation
Indices: 77694414--77694443 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
77694404 CCTATGGTTT
*
77694414 ATATGTCATGGC
1 ATATGTCATGAC
77694426 ATATGTCATGAC
1 ATATGTCATGAC
77694438 ATATGT
1 ATATGT
77694444 ATCTTAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (12 bp):
ATATGTCATGAC
Found at i:77698732 original size:23 final size:23
Alignment explanation
Indices: 77698697--77698809 Score: 110
Period size: 23 Copynumber: 5.0 Consensus size: 23
77698687 GGACTCATTA
*
77698697 CAGCTCAAAAGAGCTTACTGTTT
1 CAGCTCAATAGAGCTTACTGTTT
*
77698720 CAGCTCATTAGAG-TTGACTAGTTT
1 CAGCTCAATAGAGCTT-ACT-GTTT
77698744 -AGCTCGAA-AGAGCTTACTG-TT
1 CAGCTC-AATAGAGCTTACTGTTT
*
77698765 CAGC-CTAATAGAGCTTACCGTTT
1 CAGCTC-AATAGAGCTTACTGTTT
* *
77698788 CAGGTCAATAGAGCTTATTGTT
1 CAGCTCAATAGAGCTTACTGTT
77698810 CATCATCTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
21 5 0.07
22 16 0.22
23 45 0.61
24 8 0.11
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (23 bp):
CAGCTCAATAGAGCTTACTGTTT
Found at i:77701310 original size:13 final size:13
Alignment explanation
Indices: 77701292--77701317 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77701282 TTAAATTACA
77701292 AAACACATAATGG
1 AAACACATAATGG
77701305 AAACACATAATGG
1 AAACACATAATGG
77701318 TTGTCCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (13 bp):
AAACACATAATGG
Found at i:77703613 original size:27 final size:26
Alignment explanation
Indices: 77703559--77703642 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
77703549 AGCATAGTTG
* *
77703559 CCAGAACAGATAATGTGACAGTGTCA
1 CCAGAACAGATAATGTGGCAGTGCCA
77703585 CCAGAACAGATATATGTGGCAGTGCCA
1 CCAGAACAGATA-ATGTGGCAGTGCCA
*
77703612 CCAGATCAGATAATTGTGGCA-TAGCCA
1 CCAGAACAGATAA-TGTGGCAGT-GCCA
77703639 CCAG
1 CCAG
77703643 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 14 0.27
27 38 0.73
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGTGCCA
Found at i:77705104 original size:24 final size:24
Alignment explanation
Indices: 77705068--77705143 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
77705058 ACCAACACCG
* * *
77705068 CTCTGCCTAATCAACTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
*
77705092 CTCTCCCTTATCAGCTCATAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
77705116 CTCTCCCTTATCAGCTCCTAAATC
1 CTCTCCCTTATCAGCTCCTAAATC
77705140 CTCT
1 CTCT
77705144 TCTGACAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.24, C:0.39, G:0.04, T:0.33
Consensus pattern (24 bp):
CTCTCCCTTATCAGCTCCTAAATC
Found at i:77711390 original size:26 final size:26
Alignment explanation
Indices: 77711361--77711459 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
77711351 CATGGCTGCT
* * *
77711361 AGAACAGATAATGTGACAGTGTTAGC
1 AGAACAGATAATGTGGCAGTGCTACC
* *
77711387 AGAACAGATAATTGTGGCAGAGCCACC
1 AGAACAGATAA-TGTGGCAGTGCTACC
77711414 AGAACAGATATATGTGGCAGTGCTACC
1 AGAACAGATA-ATGTGGCAGTGCTACC
*
77711441 AGATCAGATAATTGTGGCA
1 AGAACAGATAA-TGTGGCA
77711460 TAGCCACCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
26 12 0.19
27 49 0.79
28 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.21
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGTGCTACC
Found at i:77711416 original size:27 final size:27
Alignment explanation
Indices: 77711386--77711469 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
77711376 ACAGTGTTAG
77711386 CAGAACAGATAATTGTGGCAGAGCCAC
1 CAGAACAGATAATTGTGGCAGAGCCAC
* *
77711413 CAGAACAGAT-ATATGTGGCAGTGCTAC
1 CAGAACAGATAAT-TGTGGCAGAGCCAC
* *
77711440 CAGATCAGATAATTGTGGCATAGCCAC
1 CAGAACAGATAATTGTGGCAGAGCCAC
77711467 CAG
1 CAG
77711470 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.04
27 45 0.92
28 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGAACAGATAATTGTGGCAGAGCCAC
Found at i:77711449 original size:54 final size:53
Alignment explanation
Indices: 77711361--77711469 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 53
77711351 CATGGCTGCT
* *
77711361 AGAACAGATAATGTGACAGTGTTAGCAGAACAGATAATTGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAGTGCTACCAGAACAGATAATTGTGGCAGAGCCACC
* * *
77711414 AGAACAGATATATGTGGCAGTGCTACCAGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGTGCTACCAGAACAGATAATTGTGGCAGAGCCACC
77711468 AG
1 AG
77711470 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 10 0.20
54 40 0.80
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (53 bp):
AGAACAGATAATGTGACAGTGCTACCAGAACAGATAATTGTGGCAGAGCCACC
Found at i:77711907 original size:16 final size:15
Alignment explanation
Indices: 77711886--77711915 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
77711876 GAAAATATTG
77711886 ACTTTTCGGCATTTCA
1 ACTTTTCGGC-TTTCA
77711902 ACTTTTCGGCTTTC
1 ACTTTTCGGCTTTC
77711916 GCCGATCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (15 bp):
ACTTTTCGGCTTTCA
Found at i:77712938 original size:24 final size:24
Alignment explanation
Indices: 77712906--77712979 Score: 130
Period size: 24 Copynumber: 3.0 Consensus size: 24
77712896 ACACCGTTCT
77712906 CCCTAATCAGCTCCTAAATCCTCTC
1 CCCT-ATCAGCTCCTAAATCCTCTC
77712931 CCCTATCAGCTCCTAAATCCTCTC
1 CCCTATCAGCTCCTAAATCCTCTC
*
77712955 CCTTATCAGCTCCTAAATCCTCTC
1 CCCTATCAGCTCCTAAATCCTCTC
77712979 C
1 C
77712980 TGACAACCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 44 0.92
25 4 0.08
ACGTcount: A:0.22, C:0.45, G:0.04, T:0.30
Consensus pattern (24 bp):
CCCTATCAGCTCCTAAATCCTCTC
Found at i:77713632 original size:40 final size:40
Alignment explanation
Indices: 77713583--77713675 Score: 120
Period size: 40 Copynumber: 2.3 Consensus size: 40
77713573 CTTGGTATCA
77713583 CACACTTAGTGCC-TTATATAG-CTGAAGCTA-TTCCAACTCG
1 CACACTTAGTGCCATT-TATAGTC-GAAGCTATTTCCAA-TCG
*
77713623 CACACTTAGTGCCATTTGTAGTCGAAGCTATTTCCAATCG
1 CACACTTAGTGCCATTTATAGTCGAAGCTATTTCCAATCG
*
77713663 CACACTCAGTGCC
1 CACACTTAGTGCC
77713676 GATCAAAGTC
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
40 39 0.81
41 9 0.19
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (40 bp):
CACACTTAGTGCCATTTATAGTCGAAGCTATTTCCAATCG
Found at i:77717237 original size:16 final size:16
Alignment explanation
Indices: 77717218--77717258 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 16
77717208 TGAAATATTA
77717218 AATAATTTATTAAAAT
1 AATAATTTATTAAAAT
*
77717234 AATAA---ATTAAATT
1 AATAATTTATTAAAAT
77717247 AATAATTTATTA
1 AATAATTTATTA
77717259 TATGATTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
13 12 0.57
16 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAATTTATTAAAAT
Found at i:77722685 original size:44 final size:47
Alignment explanation
Indices: 77722601--77722707 Score: 159
Period size: 44 Copynumber: 2.4 Consensus size: 47
77722591 ATTGTATCAA
77722601 TCTCGCACACTAAGTGCATATATATATATAGCCGAAGCTATCTC-AT
1 TCTCGCACACTAAGTGCATATATATATATAGCCGAAGCTATCTCGAT
* * *
77722647 TCTCGTACACTAAGTGGA-A-ATATATATATCCGAAGCTATCTCGAT
1 TCTCGCACACTAAGTGCATATATATATATAGCCGAAGCTATCTCGAT
77722692 T-TCGCACACTAAGTGC
1 TCTCGCACACTAAGTGC
77722708 CCATAATTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 35 0.64
45 4 0.07
46 16 0.29
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (47 bp):
TCTCGCACACTAAGTGCATATATATATATAGCCGAAGCTATCTCGAT
Found at i:77726504 original size:30 final size:30
Alignment explanation
Indices: 77726468--77726529 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
77726458 AATCGGAAGT
77726468 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
*
77726498 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
77726528 TT
1 TT
77726530 CAGCTATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:77727053 original size:35 final size:35
Alignment explanation
Indices: 77727007--77727076 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
77726997 ATGTAAATAT
77727007 TTGAAGTATGGCATGTATAGACTAGTAGTTATGAA
1 TTGAAGTATGGCATGTATAGACTAGTAGTTATGAA
77727042 TTGAAGTATGGCATGTATAGACTAGTAGTTATGAA
1 TTGAAGTATGGCATGTATAGACTAGTAGTTATGAA
77727077 ATATGTTTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (35 bp):
TTGAAGTATGGCATGTATAGACTAGTAGTTATGAA
Found at i:77731992 original size:28 final size:27
Alignment explanation
Indices: 77731938--77731992 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
77731928 AGTTCTGTTA
*
77731938 AGTGATTTTTTGACAAAAATGTCAAAT
1 AGTGATTTTTTGACAAAAATGTAAAAT
*
77731965 AGTGATTTATTTG-TAAAAATGTGAAAAT
1 AGTGATTT-TTTGACAAAAATGT-AAAAT
77731993 GTGTGGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (27 bp):
AGTGATTTTTTGACAAAAATGTAAAAT
Found at i:77732558 original size:43 final size:43
Alignment explanation
Indices: 77732493--77732576 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
77732483 GTTATCGAGA
77732493 TGTGATTACATGTAAAACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAAACCATGTCTAGGACATTGGCATTGTAT
* * * * * *
77732536 TGTGCTTACGTGTAAGATCATGTCTGGGACATTGGCGTTGT
1 TGTGATTACATGTAAAACCATGTCTAGGACATTGGCATTGT
77732577 TAATCAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (43 bp):
TGTGATTACATGTAAAACCATGTCTAGGACATTGGCATTGTAT
Found at i:77734317 original size:37 final size:34
Alignment explanation
Indices: 77734267--77734338 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
77734257 AAGTGTGCCG
* *
77734267 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
77734304 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
77734338 T
1 T
77734339 CCATAGCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:77747636 original size:24 final size:24
Alignment explanation
Indices: 77747608--77747656 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
77747598 TTTGGAAGTG
77747608 TTTATAAAGAAGTTGATATAACTT
1 TTTATAAAGAAGTTGATATAACTT
77747632 TTTATAAAGAAGTTGATATAACTT
1 TTTATAAAGAAGTTGATATAACTT
77747656 T
1 T
77747657 ATGTATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (24 bp):
TTTATAAAGAAGTTGATATAACTT
Found at i:77750094 original size:31 final size:31
Alignment explanation
Indices: 77750059--77750118 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
77750049 TGTTTTTTGG
77750059 AAAATATGATATCGTTGAAAAACCCTTTCCC
1 AAAATATGATATCGTTGAAAAACCCTTTCCC
77750090 AAAATATGATATCGTTGAAAAACCCTTTC
1 AAAATATGATATCGTTGAAAAACCCTTTC
77750119 ATATTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (31 bp):
AAAATATGATATCGTTGAAAAACCCTTTCCC
Found at i:77751020 original size:17 final size:17
Alignment explanation
Indices: 77750993--77751028 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
77750983 GGGCCCAAGG
77750993 CCGTGGGCCCACAT-GC
1 CCGTGGGCCCACATAGC
77751009 CCGTGTGGCCCACATAGC
1 CCGTG-GGCCCACATAGC
77751027 CC
1 CC
77751029 AGAAATGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.14, C:0.44, G:0.28, T:0.14
Consensus pattern (17 bp):
CCGTGGGCCCACATAGC
Found at i:77754740 original size:39 final size:40
Alignment explanation
Indices: 77754627--77754782 Score: 192
Period size: 39 Copynumber: 4.0 Consensus size: 40
77754617 CTCGTTCAAA
* * * *
77754627 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCAC-AAT
* *
77754668 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
*
77754707 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* * *
77754746 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
77754783 TTCATACACA
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 62 0.61
40 39 0.39
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (40 bp):
CGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
Found at i:77754742 original size:79 final size:79
Alignment explanation
Indices: 77754627--77754782 Score: 224
Period size: 79 Copynumber: 2.0 Consensus size: 79
77754617 CTCGTTCAAA
* *
77754627 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATAT
77754692 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * * *
77754707 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
*
77754771 ACAATTCGCACA
66 ACAACTCGCACA
77754783 TTCATACACA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 25 0.37
79 33 0.49
80 10 0.15
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (79 bp):
CGCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:77755552 original size:19 final size:18
Alignment explanation
Indices: 77755508--77755543 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
77755498 TATCATGCAA
77755508 GAAGCATAAACCATGCTC
1 GAAGCATAAACCATGCTC
77755526 GAAGCATAAACCATGCTC
1 GAAGCATAAACCATGCTC
77755544 ATGAGCATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (18 bp):
GAAGCATAAACCATGCTC
Found at i:77760457 original size:24 final size:25
Alignment explanation
Indices: 77760430--77760506 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 25
77760420 GCCTAGCCTC
77760430 TTTTAAT-AACTGGAACAAAGCCCT
1 TTTTAATAAACTGGAACAAAGCCCT
* **
77760454 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGAACAAAGCCCT
*** **
77760479 TTTCGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGAACAAAGCCCT
77760504 TTT
1 TTT
77760507 AGCACTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 6 0.13
25 41 0.87
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
TTTTAATAAACTGGAACAAAGCCCT
Found at i:77760465 original size:25 final size:25
Alignment explanation
Indices: 77760445--77760506 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
77760435 ATAACTGGAA
*
77760445 CAAAGCCCTTTTTGATAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTGGGG
*
77760470 CAAAGCCCTTTTCGGTAAACTGGGG
1 CAAAGCCCTTTTCGATAAACTGGGG
77760495 CAAAGCCCTTTT
1 CAAAGCCCTTTT
77760507 AGCACTTCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
CAAAGCCCTTTTCGATAAACTGGGG
Found at i:77760741 original size:27 final size:27
Alignment explanation
Indices: 77760711--77760852 Score: 194
Period size: 27 Copynumber: 5.3 Consensus size: 27
77760701 GGGGCAAAAT
* * * * *
77760711 GGTAATTTTACCCCACAAGGTTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77760738 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77760765 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77760792 GGTGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77760819 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
77760846 GGTAATT
1 GGTAATT
77760853 TTACAAACTA
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77760866 original size:81 final size:80
Alignment explanation
Indices: 77760736--77761048 Score: 280
Period size: 81 Copynumber: 3.9 Consensus size: 80
77760726 CAAGGTTATC
* ** *
77760736 TCGGTAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTTGGTGATTC
1 TCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTT-TA-CAAACAAGGGTATTTTGGTAATTC
**
77760800 TACCCTAC-AGGGGTATT
64 TA-CAAACTAGGGGTATT
*
77760817 TCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTT
1 TCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTTGGTAATTCT
77760882 ACAAACTAGGGGTATT
65 ACAAACTAGGGGTATT
* * * *
77760898 TTGGTAACTTTGTAAACC-A-A-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAAT
1 TCGGTAA--TTCT-ACCCTACAGGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTGGTAAT
* ** * *
77760960 TTTGTAAACCAAGGGTATT
62 TCTACAAACTAGGGGTATT
* * ** *
77760979 TTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAACTTTGTA-AACCAAGGGTATTTTGGTAATT
1 TCGGTAATTCTACCCTAC-AGGGGTATTTTGGTAA-TTT-TACAAACAAGGGTATTTTGGTAATT
*
77761042 TTACAAA
63 CTACAAA
77761049 TCGAGGATAG
Statistics
Matches: 198, Mismatches: 21, Indels: 26
0.81 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 2 0.01
79 3 0.02
80 7 0.04
81 165 0.83
82 11 0.06
83 6 0.03
84 3 0.02
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (80 bp):
TCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTGGTAATTCTA
CAAACTAGGGGTATT
Found at i:77760867 original size:27 final size:27
Alignment explanation
Indices: 77760837--77761096 Score: 306
Period size: 27 Copynumber: 9.6 Consensus size: 27
77760827 TACCCTACAG
*
77760837 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
77760864 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
77760891 GGGTATTTTGGTAACTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77760918 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
**
77760945 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
77760972 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
77760999 GGGTATTTTGGTAACTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
77761026 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * *
77761053 GGATAGTTGGGTAATTTTATAAACC-G
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77761079 GAGGTACTTTGGTAATTT
1 G-GGTATTTTGGTAATTT
77761097 GGTAAACTAA
Statistics
Matches: 196, Mismatches: 36, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 195 0.99
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:77760868 original size:54 final size:53
Alignment explanation
Indices: 77760810--77761096 Score: 362
Period size: 54 Copynumber: 5.3 Consensus size: 53
77760800 TACCCTACAG
* * ** ** *
77760810 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTTGGTAATTTTGTAAACCAA
*
77760864 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAACTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTGTAAACCAA
77760918 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTGTAAACCAA
*
77760972 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAACTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTGTAAACCAA
* * * * *
77761026 GGGTATTTTGGTAATTTTACAAATC-GAGGATAGTTGGGTAATTTTATAAACC-G
1 GGGTATTTTGGTAATTTTACAAA-CAG-GGGTATTTTGGTAATTTTGTAAACCAA
*
77761079 GAGGTACTTTGGTAATTT
1 G-GGTATTTTGGTAATTT
77761097 GGTAAACTAA
Statistics
Matches: 210, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
53 6 0.03
54 202 0.96
55 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTGTAAACCAA
Found at i:77761011 original size:108 final size:108
Alignment explanation
Indices: 77760834--77761096 Score: 413
Period size: 108 Copynumber: 2.4 Consensus size: 108
77760824 TTCTACCCTA
* *
77760834 CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
77760899 TGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
66 TGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
*
77760942 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
*
77761007 TGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAT
66 TGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * * * *
77761050 C-GAGGATAGTTGGGTAATTTTATAAACC-GGAGGTACTTTGGTAATTT
1 CAG-GGGTATTTTGGTAATTTTATAAACCAAG-GGTATTTTGGTAATTT
77761097 GGTAAACTAA
Statistics
Matches: 143, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
107 2 0.01
108 141 0.99
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (108 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
TGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:77764837 original size:29 final size:29
Alignment explanation
Indices: 77764776--77764865 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
77764766 CACATACCTG
* *
77764776 TATATAGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
77764804 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
77764833 TATATGGCCCATCAAGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
77764862 TATA
1 TATA
77764866 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 17 0.30
29 39 0.70
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:77775404 original size:2 final size:2
Alignment explanation
Indices: 77775397--77775425 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
77775387 GAGACTAGTC
77775397 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77775426 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77776692 original size:64 final size:63
Alignment explanation
Indices: 77776512--77776694 Score: 199
Period size: 67 Copynumber: 2.8 Consensus size: 63
77776502 TATAGTTCGG
* * * * * *
77776512 CTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTAG
1 CTCTCTTGT-CTACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATCCCGTAA
* * *
77776575 CTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACCCATGCGACCTAGCTACATATATCCCGT
1 CTCTCTTGTCTACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATCCCGT
77776640 AA
62 AA
*
77776642 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 CTCTCTTGTCTACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT
77776695 CATAATGTCT
Statistics
Matches: 100, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 28 0.28
66 22 0.22
67 31 0.31
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (63 bp):
CTCTCTTGTCTACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAA
Found at i:77778370 original size:42 final size:43
Alignment explanation
Indices: 77778308--77778414 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 43
77778298 TACATGTAAT
* *
77778308 CATATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAACA
1 CATATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAACA
* *
77778351 CATATA-CGATGCTAATGTCCCAGACATGGTCTTACACGTAA-A
1 CATATATCGATGCCAATGTCCCAGACAGGGTCTTACACG-AACA
* * *
77778393 TCAAAAATCGATGCCAACGTCC
1 -CATATATCGATGCCAATGTCC
77778415 TAGATGTCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 29 0.55
43 12 0.23
44 12 0.23
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
CATATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAACA
Found at i:77779983 original size:14 final size:14
Alignment explanation
Indices: 77779964--77779994 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
77779954 GAGAATAGAT
*
77779964 GAATAGAATTGAGA
1 GAATAGAATTGAAA
77779978 GAATAGAATTGAAA
1 GAATAGAATTGAAA
77779992 GAA
1 GAA
77779995 AAAGAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (14 bp):
GAATAGAATTGAAA
Found at i:77783081 original size:13 final size:13
Alignment explanation
Indices: 77783048--77783081 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
77783038 ATTCACATTA
77783048 GAATTAACATTTG
1 GAATTAACATTTG
*
77783061 GAATTTAAGATTTG
1 GAA-TTAACATTTG
77783075 GAATTAA
1 GAATTAA
77783082 TTCGATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (13 bp):
GAATTAACATTTG
Found at i:77783619 original size:21 final size:20
Alignment explanation
Indices: 77783589--77783629 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
77783579 TCAATCACTT
77783589 AAAAAATTAAGAAA-TTAAAA
1 AAAAAATTAA-AAAGTTAAAA
77783609 AAAAAATTTAAAAAGTTAAAA
1 AAAAAA-TTAAAAAGTTAAAA
77783630 GTAAGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAAAATTAAAAAGTTAAAA
Found at i:77785778 original size:19 final size:19
Alignment explanation
Indices: 77785733--77785779 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
77785723 ACCGGACGTT
* *
77785733 AATAGATTTAAAAATTTAA
1 AATATATTTAAAAAATTAA
*
77785752 AATCTATTTAAAAAATTAA
1 AATATATTTAAAAAATTAA
77785771 GAA-ATATTT
1 -AATATATTT
77785780 TAAGGAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
AATATATTTAAAAAATTAA
Found at i:77787240 original size:3 final size:3
Alignment explanation
Indices: 77787232--77787269 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
77787222 TTGATTTTAC
77787232 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
77787270 TTAATGATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:77788155 original size:19 final size:20
Alignment explanation
Indices: 77788099--77788207 Score: 105
Period size: 20 Copynumber: 5.2 Consensus size: 20
77788089 TTCCAAAAAA
*
77788099 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTT
77788119 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAATAATTTTT
* *
77788139 AAAAATTTAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTTT
*
77788158 AAAAATTCCAAACTTTATATTTTTT
1 AAAAATT-CAAA----ATAATTTTT
*
77788183 AAAAAATT-ATAATAATTTTT
1 -AAAAATTCAAAATAATTTTT
77788203 AAAAA
1 AAAAA
77788208 AATTCTAAAG
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
19 17 0.23
20 42 0.57
24 4 0.05
25 4 0.05
26 7 0.09
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTT
Found at i:77788224 original size:47 final size:44
Alignment explanation
Indices: 77788134--77788224 Score: 101
Period size: 47 Copynumber: 2.0 Consensus size: 44
77788124 TTCAAAATAA
* **
77788134 TTTTTAAAAATTTAAAATATTTATAAAAATTCCAAACTTTATAT
1 TTTTTAAAAATTTAAAATATTTAAAAAAATTCCAAACGATATAT
* * *
77788178 TTTTTAAAAAATTATAATAATTTTTAAAAAAATTCTAAAGGATATAT
1 TTTTT-AAAAATT-TAA-AATATTTAAAAAAATTCCAAACGATATAT
77788225 AAAGAAAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
44 5 0.13
45 7 0.18
46 3 0.08
47 23 0.61
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (44 bp):
TTTTTAAAAATTTAAAATATTTAAAAAAATTCCAAACGATATAT
Found at i:77789726 original size:49 final size:50
Alignment explanation
Indices: 77789656--77789893 Score: 300
Period size: 49 Copynumber: 4.8 Consensus size: 50
77789646 TGAGGTCATG
*
77789656 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * * *
77789705 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * ** *
77789756 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* *
77789806 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * *
77789855 TGTGTAGTACTAAGTGCAGGCTGCTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77789894 GCTTTGGCTA
Statistics
Matches: 161, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 77 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:77789845 original size:101 final size:98
Alignment explanation
Indices: 77789655--77789876 Score: 309
Period size: 101 Copynumber: 2.2 Consensus size: 98
77789645 GTGAGGTCAT
* *
77789655 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
*
77789720 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTACGCGTACCCGATAA-TT-GATCAC
* ** *
77789755 GTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
* * * *
77789820 TGCAGGCTACTACGTGTACCGGATAATTGGTCGC
65 TGCAGGCTACTACGCGTACCCGATAATTGATCAC
*
77789854 ATGTGTAGTACTAAGTGCAGGCT
1 GTGTGTAGTACTAAGTGCAGGCT
77789877 GCTATGCGTA
Statistics
Matches: 109, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 26 0.24
100 41 0.38
101 42 0.39
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACCCGATAATTGATCAC
Found at i:77791425 original size:75 final size:74
Alignment explanation
Indices: 77791297--77791447 Score: 266
Period size: 75 Copynumber: 2.0 Consensus size: 74
77791287 TACTCATCCC
*
77791297 TAATGCCAGGACCTAAAAATCACCCCAAAGTCACCAAATTTGACCCAAAACATTACCAATTAATT
1 TAATGCCAGGACCTAAAAATCACCCCAAAATCACCAAATTTGACCCAAAACATTACCAATTAATT
77791362 TCCAAAGCT
66 TCCAAAGCT
* *
77791371 TAATGTCAGGACCTAAAAATCACCCCCAAAATCACCAATTTTGACCCAAAACATTACCAATTAAT
1 TAATGCCAGGACCTAAAAATCA-CCCCAAAATCACCAAATTTGACCCAAAACATTACCAATTAAT
77791436 TTCCAAAGCT
65 TTCCAAAGCT
77791446 TA
1 TA
77791448 TGAGACTTAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 21 0.29
75 52 0.71
ACGTcount: A:0.42, C:0.28, G:0.07, T:0.23
Consensus pattern (74 bp):
TAATGCCAGGACCTAAAAATCACCCCAAAATCACCAAATTTGACCCAAAACATTACCAATTAATT
TCCAAAGCT
Found at i:77800853 original size:46 final size:44
Alignment explanation
Indices: 77800753--77800858 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 44
77800743 TGTCTTTGAC
** * * *
77800753 ATGGACTTACATGAATTATTCCTGTCTCTAATGCTATATATAAT
1 ATGGACTTACATGGCTTAATCCTGTCTCCAAAGCTATATATAAT
* *
77800797 ATGGACTTACATGGCTTAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTTAATCCTGTCTCCAAAG-C-TATATATAAT
77800843 ATGGACTTACATGGCT
1 ATGGACTTACATGGCT
77800859 CATTTCTGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 28 0.53
45 1 0.02
46 24 0.45
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (44 bp):
ATGGACTTACATGGCTTAATCCTGTCTCCAAAGCTATATATAAT
Found at i:77803362 original size:2 final size:2
Alignment explanation
Indices: 77803355--77803379 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77803345 ATGATTTGTG
77803355 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
77803380 GGTTAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77808415 original size:40 final size:40
Alignment explanation
Indices: 77808334--77808550 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
77808324 AAACCAAGTA
* *
77808334 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77808373 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77808413 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77808453 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77808493 CCTTCGGGGC-TAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77808532 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77808551 TTATCATCCG
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 48 0.30
40 113 0.70
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77813617 original size:47 final size:46
Alignment explanation
Indices: 77813563--77813689 Score: 182
Period size: 47 Copynumber: 2.7 Consensus size: 46
77813553 CTTCGGGACT
* * *
77813563 TATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTT-CACATTCATCACATTGGCCACTCGGCCC
* *
77813610 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACAC-TTCACATTCATCACATTGGCCACTCGGCCC
77813657 TATCACATATATACACCTTCACATTCATCACAT
1 TATCACATATATACA-CTTCACATTCATCACAT
77813690 CGGCTGTAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.96
48 3 0.04
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.31
Consensus pattern (46 bp):
TATCACATATATACACTTCACATTCATCACATTGGCCACTCGGCCC
Found at i:77813639 original size:25 final size:25
Alignment explanation
Indices: 77813611--77813689 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
77813601 ACTCGGCCCT
*
77813611 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
77813636 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
77813658 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
77813683 ATCACAT
1 ATCACAT
77813690 CGGCTGTAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:77815119 original size:93 final size:93
Alignment explanation
Indices: 77815007--77815178 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
77814997 GCCCATAAGT
* *
77815007 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77815072 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
77815100 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77815165 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
77815179 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77815174 original size:46 final size:46
Alignment explanation
Indices: 77814999--77815174 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
77814989 TGTAACCCGC
* * *
77814999 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
77815045 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
77815095 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
77815138 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77815175 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:77817600 original size:30 final size:30
Alignment explanation
Indices: 77817556--77817644 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
77817546 CAAAGATAAC
77817556 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
77817585 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
77817615 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
77817645 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:77817604 original size:15 final size:15
Alignment explanation
Indices: 77817556--77817635 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
77817546 CAAAGATAAC
*
77817556 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
77817570 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
77817585 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
77817600 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
77817615 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
77817630 AAGAAA
1 AAGAAA
77817636 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:77817644 original size:15 final size:15
Alignment explanation
Indices: 77817567--77817644 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
77817557 AGAAAACCGA
77817567 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
77817582 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
77817596 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
77817611 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
77817627 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
77817642 ATA
1 ATA
77817645 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:77820703 original size:93 final size:93
Alignment explanation
Indices: 77820591--77820762 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
77820581 GCCCATAAGT
* *
77820591 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77820656 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
77820684 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77820749 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
77820763 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77820758 original size:46 final size:46
Alignment explanation
Indices: 77820583--77820758 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
77820573 TGTAACCCGC
* * *
77820583 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
77820629 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
77820679 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
77820722 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77820759 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:77822224 original size:49 final size:49
Alignment explanation
Indices: 77822048--77822225 Score: 324
Period size: 49 Copynumber: 3.7 Consensus size: 49
77822038 TCAGGATATT
77822048 ACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
* *
77822095 ACATCAGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
77822144 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
77822193 ACATCGGCCATTAGGCCTTATCACATATATATA
1 ACATCGGCCATTAGGCCTTATCACATATATATA
77822226 TCTCATACAT
Statistics
Matches: 125, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
47 23 0.18
49 102 0.82
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.31
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
Found at i:77828280 original size:40 final size:40
Alignment explanation
Indices: 77828172--77828381 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77828162 CGGGATTTAA
* * * * *
77828172 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77828212 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77828252 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77828292 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77828332 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77828372 CCGGATATAT
1 CCGGATATAT
77828382 TTTCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77836330 original size:40 final size:40
Alignment explanation
Indices: 77836222--77836431 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77836212 CGGGATTTAA
* * * * *
77836222 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77836262 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77836302 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77836342 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77836382 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77836422 CCGGATATAT
1 CCGGATATAT
77836432 TTTCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77841103 original size:40 final size:40
Alignment explanation
Indices: 77841026--77841242 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
77841016 AAACCAAGTA
* *
77841026 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77841065 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77841105 CCTTAGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77841145 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77841185 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77841224 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77841243 TTATCATCCG
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 49 0.30
40 116 0.70
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77847761 original size:25 final size:25
Alignment explanation
Indices: 77847732--77847828 Score: 113
Period size: 25 Copynumber: 3.9 Consensus size: 25
77847722 TCCTGTGCAT
* *
77847732 GTATGCTCATATGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGTGAATCG
* *
77847757 GTATGCTCAAACGAGCTGTGAATCA
1 GTATGCTCACACGAGCTGTGAATCG
* * * *
77847782 TTATGCTCACAGGAGTTGTAAATCG
1 GTATGCTCACACGAGCTGTGAATCG
*
77847807 GTATGCTCACACGAGCTATGAA
1 GTATGCTCACACGAGCTGTGAA
77847829 AATGGGTCTG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTGAATCG
Found at i:77847788 original size:50 final size:50
Alignment explanation
Indices: 77847733--77847828 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
77847723 CCTGTGCATG
* * * *
77847733 TATGCTCATATGAGCTGTGAATCGGTATGCTCAAACGAGCTGTGAATCAT
1 TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAATCAT
* *
77847783 TATGCTCACAGGAGTTGTAAATCGGTATGCTCACACGAGCTATGAA
1 TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAA
77847829 AATGGGTCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (50 bp):
TATGCTCACAGGAGCTGTAAATCGGTATGCTCAAACGAGCTATGAATCAT
Found at i:77847840 original size:27 final size:25
Alignment explanation
Indices: 77847752--77847842 Score: 74
Period size: 25 Copynumber: 3.6 Consensus size: 25
77847742 ATGAGCTGTG
* * **
77847752 AATCGGTATGCTCAAACGAGCTGTG
1 AATCGGTATGCTCACACGAGTTGAA
** * *
77847777 AATCATTATGCTCACAGGAGTTGTA
1 AATCGGTATGCTCACACGAGTTGAA
77847802 AATCGGTATGCTCACACGAGCTATGAA
1 AATCGGTATGCTCACACGAG-T-TGAA
* *
77847829 AATGGGTCTGCTCA
1 AATCGGTATGCTCA
77847843 TATGAGCTTT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 36 0.69
26 1 0.02
27 15 0.29
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (25 bp):
AATCGGTATGCTCACACGAGTTGAA
Found at i:77849213 original size:20 final size:19
Alignment explanation
Indices: 77849170--77849206 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
77849160 ACTCTCCCTC
77849170 CAAAAGAATTTTTCGTCCT
1 CAAAAGAATTTTTCGTCCT
77849189 CAAAAGAGATTTTT-GTCC
1 CAAAAGA-ATTTTTCGTCC
77849207 CTGAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (19 bp):
CAAAAGAATTTTTCGTCCT
Found at i:77855367 original size:20 final size:20
Alignment explanation
Indices: 77855330--77855367 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77855320 CTTGAAATTC
*
77855330 AAATTACTGATTATATGATT
1 AAATTACTGATTACATGATT
*
77855350 AAATTACTGTTTACATGA
1 AAATTACTGATTACATGA
77855368 ATGAAAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
AAATTACTGATTACATGATT
Found at i:77855751 original size:22 final size:22
Alignment explanation
Indices: 77855726--77855782 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
77855716 CAGCTGGTAT
77855726 GAGCTTACTGTTCAACTCAATA
1 GAGCTTACTGTTCAACTCAATA
* *
77855748 GAGCCTACCAT-TTCAGCTCAATA
1 GAGCTTA-C-TGTTCAACTCAATA
77855771 GAGCTTACTGTT
1 GAGCTTACTGTT
77855783 TATTAGCTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.31
23 18 0.62
24 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGTTCAACTCAATA
Found at i:77855973 original size:20 final size:20
Alignment explanation
Indices: 77855948--77856031 Score: 84
Period size: 20 Copynumber: 4.2 Consensus size: 20
77855938 AAATAAGCTA
77855948 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
77855968 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
*
77855988 TATTGATACA-G-ATGAATTAC
1 TGTTGA-A-ATGAATGAATTAC
* * *
77856008 TATTGATAT-AGATAAATTAC
1 TGTTGAAATGA-ATGAATTAC
77856028 TGTT
1 TGTT
77856032 ATTACTAATG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
18 1 0.02
20 51 0.93
21 2 0.04
22 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.38
Consensus pattern (20 bp):
TGTTGAAATGAATGAATTAC
Found at i:77856002 original size:24 final size:20
Alignment explanation
Indices: 77855950--77856013 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
77855940 ATAAGCTATG
*
77855950 TTGAAATGAATGAATTACTG
1 TTGAAATGAATGAATTACTA
77855970 TTGAAATGAATGAATTACTA
1 TTGAAATGAATGAATTACTA
77855990 TTGATACA-G-ATGAATTACTA
1 TTGA-A-ATGAATGAATTACTA
77856010 TTGA
1 TTGA
77856014 TATAGATAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 38 0.93
21 2 0.05
22 1 0.02
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.36
Consensus pattern (20 bp):
TTGAAATGAATGAATTACTA
Found at i:77856062 original size:20 final size:20
Alignment explanation
Indices: 77856022--77856100 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
77856012 GATATAGATA
*
77856022 AATTACT-GTTATTACTAATG
1 AATTACTGGTTA-TACGAATG
*
77856042 AATTACTGGTTATACGGATG
1 AATTACTGGTTATACGAATG
* * *
77856062 AACTACTAGTTATATGAATG
1 AATTACTGGTTATACGAATG
* *
77856082 AATTACAGTTTATACGAAT
1 AATTACTGGTTATACGAAT
77856101 AAAAATGAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
20 43 0.91
21 4 0.09
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
AATTACTGGTTATACGAATG
Found at i:77856086 original size:60 final size:60
Alignment explanation
Indices: 77855950--77856087 Score: 142
Period size: 60 Copynumber: 2.3 Consensus size: 60
77855940 ATAAGCTATG
* *
77855950 TTGAAATGAATGAATTACTGTTGAAATGAATGAATTACTATTGATACAGATGAATTACTA
1 TTGATATGAATGAATTACTGTTGAAATGAATGAATTACTATTGATACAGATGAACTACTA
* * * *
77856010 TTGATAT-AGATAAATTACTGTT-ATTACT-AATGAATTACTGGTT-ATACGGATGAACTACTA
1 TTGATATGA-ATGAATTACTGTTGA--AATGAATGAATTACT-ATTGATACAGATGAACTACTA
77856070 GTT-ATATGAATGAATTAC
1 -TTGATATGAATGAATTAC
77856088 AGTTTATACG
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
59 2 0.03
60 56 0.86
61 7 0.11
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (60 bp):
TTGATATGAATGAATTACTGTTGAAATGAATGAATTACTATTGATACAGATGAACTACTA
Found at i:77858632 original size:58 final size:57
Alignment explanation
Indices: 77858551--77858694 Score: 132
Period size: 57 Copynumber: 2.5 Consensus size: 57
77858541 CTCATTATAG
* * * * *
77858551 AAAGGATTTAG-CTCGGGCAGGTAATCCTGATACAATCCC-TCTTGAGCATATGTTACA-
1 AAAGGATTTAGCCT-GGACTGGTAATCCTAAT-CAAGCCCTTC-TGAGCATACGTTACAT
* * ** *
77858608 ATTAGGATTTAGCCTGGACTGGTAATTCTAATTGAGCTCTTCTGAGCATACGTTACAT
1 A-AAGGATTTAGCCTGGACTGGTAATCCTAATCAAGCCCTTCTGAGCATACGTTACAT
*
77858666 AAAGGATTTAGCCTGGATTGGTAATCCTA
1 AAAGGATTTAGCCTGGACTGGTAATCCTA
77858695 TAGTACGATA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
57 43 0.61
58 25 0.36
59 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (57 bp):
AAAGGATTTAGCCTGGACTGGTAATCCTAATCAAGCCCTTCTGAGCATACGTTACAT
Found at i:77864876 original size:24 final size:25
Alignment explanation
Indices: 77864847--77864904 Score: 102
Period size: 24 Copynumber: 2.4 Consensus size: 25
77864837 TTCCAAGTTA
77864847 TTTTCAGTTTCTTCTTTTTCACC-T
1 TTTTCAGTTTCTTCTTTTTCACCAT
77864871 TTTTCAGTTTCTTCTTTTTCACCAT
1 TTTTCAGTTTCTTCTTTTTCACCAT
77864896 TTTT-AGTTT
1 TTTTCAGTTT
77864905 TTCCTCCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.10, C:0.21, G:0.05, T:0.64
Consensus pattern (25 bp):
TTTTCAGTTTCTTCTTTTTCACCAT
Found at i:77870491 original size:46 final size:46
Alignment explanation
Indices: 77870430--77870639 Score: 194
Period size: 46 Copynumber: 4.5 Consensus size: 46
77870420 AGAGCTAGTG
*
77870430 TAAGACATGTTTGGGACATGCATCAGCCTCGGGACGTAAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCAGCCTCGGGACGTAAGCCAGTA
* * *** * *
77870476 TAAGGCATGTCTGGGACATGCATC-GACCACATTATG-AGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAG-CCTCGGGACGTA-AGCCAGTA
* * * * * *
77870522 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--TAAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCCTCGGGACGTAA--GCCAGTA
* *
77870570 TAAGACATGTCTGGGACATGCATTAGCCTCGGGACATAAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCAGCCTCGGGACGTAAGCCAGTA
77870616 TAAGACATGTCTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
77870640 GACTACGAGA
Statistics
Matches: 130, Mismatches: 24, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.02
46 77 0.59
47 29 0.22
48 21 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCGGGACGTAAGCCAGTA
Found at i:77870598 original size:140 final size:140
Alignment explanation
Indices: 77870336--77870742 Score: 552
Period size: 140 Copynumber: 2.9 Consensus size: 140
77870326 TGAGCTAGTG
*
77870336 TAAGACATGTCTTGGACATGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
* * *
77870401 TGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGGGACG
66 TGGCATCGGCATTAAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
77870466 TAAGCCAGTA
131 TAAGCCAGTA
* *
77870476 TAAGGCATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
* * * *
77870541 TGGCATCGGCATTGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGGGACA
66 TGGCATCGGCATTAAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
77870606 TAAGCCAGTA
131 TAAGCCAGTA
* * * * * *
77870616 TAAGACATGTCTGGGACATGCATCGACTAC--GA-GATGTGTCAATGTAAGGCCATGTCTGGGAT
1 TAAGACATGTCTGGGACATGCATCGACCACATTATGA-GAGCCAATGTAAGACCATGTCTGGGAC
* * * *
77870678 ATGGCATTGGCACGGTTATGA-GAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTC
65 ATGGCATCGGCA---TTAAGACAAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTC
77870742 G
125 G
77870743 AAGATGATAG
Statistics
Matches: 236, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
137 2 0.01
138 34 0.14
140 172 0.73
141 17 0.07
142 11 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (140 bp):
TAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAATGTAAGACCATGTCTGGGACA
TGGCATCGGCATTAAGACAAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACA
TAAGCCAGTA
Found at i:77875582 original size:17 final size:17
Alignment explanation
Indices: 77875560--77875594 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
77875550 CAAAATTTGT
77875560 GTACCTGAGGACAATGA
1 GTACCTGAGGACAATGA
*
77875577 GTACCTGAGGACGATGA
1 GTACCTGAGGACAATGA
77875594 G
1 G
77875595 CTTATTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.17
Consensus pattern (17 bp):
GTACCTGAGGACAATGA
Found at i:77877880 original size:46 final size:47
Alignment explanation
Indices: 77877823--77878091 Score: 155
Period size: 46 Copynumber: 5.7 Consensus size: 47
77877813 TCATTTGTGT
77877823 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCACATTATGA
* * * ** *
77877869 GAGCCAGTGTAAGACCATGTTTGCGACATGGCAT--A-GGCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGACCACATT---ATGA
* * *** *
77877917 GAGCTAGTGTAAGA-CATGTCTGGGACATGCAT-TAGCCTCGGGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGA-CCACATTATG-A
* * * * * ** *
77877964 -AGCTAGTATAAGA-CATGTCTAGGACATGCATTGGCTACAGGATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCACATTATGA
* *
77878009 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACAGTTATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGACCACA-TTA--TGA
*
77878057 GAGCTAGTGTAAGATCATGTCTGGGACATGTCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATC
77878092 AGTAGTTTAC
Statistics
Matches: 170, Mismatches: 34, Indels: 34
0.71 0.14 0.14
Matches are distributed among these distances:
44 8 0.05
45 21 0.12
46 62 0.36
47 26 0.15
48 23 0.14
49 3 0.02
50 27 0.16
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACCACATTATGA
Found at i:77887775 original size:143 final size:140
Alignment explanation
Indices: 77887567--77887860 Score: 543
Period size: 143 Copynumber: 2.1 Consensus size: 140
77887557 TGAGTTAAAT
* *
77887567 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTAATGAAAGCATGGAGAT
77887632 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAAC-AAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
77887697 GTGTGCATGAGTA
128 GTGTGCATGAGTA
77887710 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTAATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTAATGAAAGCATGGAGAT
77887775 GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
66 GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
77887840 TGCATGAGTA
131 TGCATGAGTA
77887850 TTCGGCCATGC
1 TTCGGCCATGC
77887861 TATAGAATTT
Statistics
Matches: 149, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
140 29 0.19
142 36 0.24
143 84 0.56
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (140 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTAATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTG
TGCATGAGTA
Found at i:77888537 original size:29 final size:29
Alignment explanation
Indices: 77888504--77888635 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
77888494 GTGACGAGAT
*
77888504 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
77888533 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
77888562 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
77888591 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
77888620 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
77888636 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:77912913 original size:42 final size:39
Alignment explanation
Indices: 77912854--77912936 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 39
77912844 CTACATAGTG
*
77912854 TTTTCTTTTGCCTGGTTTTATTTAATTAATTTTCTTTTAATT
1 TTTTCTTTTGCCTGGTTTTAATT-ATT--TTTTCTTTTAATT
*
77912896 TTTTCTTTTGCTTGGTTTTAATTATTTTTTCTTTTAATT
1 TTTTCTTTTGCCTGGTTTTAATTATTTTTTCTTTTAATT
77912935 TT
1 TT
77912937 GGCCCATGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
39 15 0.38
41 3 0.08
42 21 0.54
ACGTcount: A:0.14, C:0.08, G:0.07, T:0.70
Consensus pattern (39 bp):
TTTTCTTTTGCCTGGTTTTAATTATTTTTTCTTTTAATT
Found at i:77918471 original size:17 final size:17
Alignment explanation
Indices: 77918449--77918485 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
77918439 TCATTAAATC
77918449 CATGAAAACTGCAGGAG
1 CATGAAAACTGCAGGAG
*
77918466 CATGAAAATTGCAGGAG
1 CATGAAAACTGCAGGAG
77918483 CAT
1 CAT
77918486 TCGTTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (17 bp):
CATGAAAACTGCAGGAG
Found at i:77922608 original size:42 final size:42
Alignment explanation
Indices: 77922476--77922628 Score: 128
Period size: 42 Copynumber: 3.6 Consensus size: 42
77922466 TAAAATACCA
* ** * *
77922476 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCACATTG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCG
* * ** * * * *
77922518 ATGACATATCCCAGATTTGGTTTTATACAAAATCTCATTTCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCG
* *
77922560 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCG
* * *
77922602 ACGCCATAG-CCCAAACATTGTCTTACA
1 ATGCCAT-GTCCCAGACATGGTCTTACA
77922629 TGATAACACA
Statistics
Matches: 84, Mismatches: 26, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
42 83 0.99
43 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCG
Found at i:77924592 original size:42 final size:42
Alignment explanation
Indices: 77924545--77924665 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
77924535 GTTGAGATTA
*
77924545 CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGA-CTT
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATC-C
* * * * *
77924587 TGTGTAAGACCATAGCTGGGCTATTGGCATCGTTATGAGATCC
1 CGTGTAAGACCATATCTGGGATA-TGGCATTGATATGAGATCC
* * *
77924630 CATGTAAGACCATATCTGGAATATGGCATTGGTATG
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATG
77924666 GTGTTACGTG
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 31 0.48
43 32 0.50
44 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGATCC
Found at i:77924770 original size:20 final size:20
Alignment explanation
Indices: 77924745--77924782 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77924735 AATGTTTAAG
77924745 TTGTGAAAGACTATGGTATT
1 TTGTGAAAGACTATGGTATT
*
77924765 TTGTGAAAGATTATGGTA
1 TTGTGAAAGACTATGGTA
77924783 AGTTGCAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (20 bp):
TTGTGAAAGACTATGGTATT
Found at i:77933366 original size:49 final size:49
Alignment explanation
Indices: 77933305--77933437 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
77933295 GAATTGAGAC
* * *
77933305 GAGAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACACC-GA-TAGAT
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATC-A-ACCTCATTAGAT
*
77933354 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCATTATAT
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCATTAGAT
* * * *
77933403 GAAAGTCAGTGTAAGACTTGTCTGGGATATGGCAT
1 GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCAT
77933438 AGATTTGATG
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
47 3 0.04
48 2 0.03
49 69 0.93
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
GAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCATTAGAT
Found at i:77942085 original size:13 final size:13
Alignment explanation
Indices: 77942067--77942091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77942057 GCCATGTGAG
77942067 GGACACGGGCCTT
1 GGACACGGGCCTT
77942080 GGACACGGGCCT
1 GGACACGGGCCT
77942092 GTGTCAGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
GGACACGGGCCTT
Found at i:77953533 original size:50 final size:50
Alignment explanation
Indices: 77953449--77953886 Score: 396
Period size: 50 Copynumber: 8.8 Consensus size: 50
77953439 CATTATGAGT
* *
77953449 CACG-TGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAAATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
*
77953498 C-CGTATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGG
1 CACG-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * * * *
77953548 -TCGTATGTGTAGTACTAAGTGCA-GCTACTATGCGCACCCG-TTAACTTCGAT
1 CACG-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG-G
* * * * *
77953599 CACG-TGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
* *
77953649 CACG-TGTGTAGTACTAAGTACAGGCTACTACGTGTTCCAGATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* * * * * * *
77953698 TCAC-ATGTGTAGTACTAAGTGCAGGCCACTATGCGTACC-CATTAACTTCGAT
1 -CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG-G
* * * *
77953750 CACG-TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGG
*
77953800 CACG-TATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
* *
77953849 -TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 CACG-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
77953887 TAGAGAGCTT
Statistics
Matches: 315, Mismatches: 54, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
48 7 0.02
49 22 0.07
50 232 0.74
51 49 0.16
52 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
Found at i:77953767 original size:101 final size:101
Alignment explanation
Indices: 77953648--77953829 Score: 285
Period size: 101 Copynumber: 1.8 Consensus size: 101
77953638 GATGGTTAAG
* * *
77953648 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGT-TCCAGATTGATAGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTAT-CAGATGGATAAGTCACATATGTAGTA
77953712 CTAAGTGCAGGCCACTATGCGTACCCATTAACTTCGA
65 CTAAGTGCAGGCCACTATGCGTACCCATTAACTTCGA
* * *
77953749 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTAC
*
77953814 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCCACTA
77953830 CGTGTACCAG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 72 0.99
102 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTAC
TAAGTGCAGGCCACTATGCGTACCCATTAACTTCGA
Found at i:77953793 original size:151 final size:151
Alignment explanation
Indices: 77953448--77953886 Score: 686
Period size: 151 Copynumber: 2.9 Consensus size: 151
77953438 CCATTATGAG
* * * * * *
77953448 TCACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTACCAAATTGAT-AGGC-CGTATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACG--TGTGTAGT
* *
77953511 ACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGGTCGTATGTGTAGTACTAAGTGCA-GCTA
64 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
* *
77953575 CTATGCGCACCCGTTAACTTCGA
129 CTATGCGTACCCATTAACTTCGA
*
77953598 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
* * * *
77953663 TAAGTACAGGCTACTACGTGTTCCAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCCACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
77953728 ATGCGTACCCATTAACTTCGA
131 ATGCGTACCCATTAACTTCGA
*
77953749 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTATGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
77953814 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
*
77953879 ATGTGTAC
131 ATGCGTAC
77953887 TAGAGAGCTT
Statistics
Matches: 264, Mismatches: 22, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
150 104 0.39
151 158 0.60
152 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
ATGCGTACCCATTAACTTCGA
Found at i:77954111 original size:16 final size:16
Alignment explanation
Indices: 77954090--77954121 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77954080 AGAATGGAGT
77954090 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
77954106 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
77954122 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:77958163 original size:42 final size:42
Alignment explanation
Indices: 77958116--77958249 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
77958106 TGGCCCTTAG
* ** *
77958116 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
77958158 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
77958200 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
77958242 GCCCATTT
1 GCCCATTT
77958250 GGGGAGACTA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:77958425 original size:25 final size:25
Alignment explanation
Indices: 77958397--77958491 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
77958387 CTCTTTTAAT
* *
77958397 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
77958422 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
77958447 AACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
77958472 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77958492 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:77958427 original size:50 final size:49
Alignment explanation
Indices: 77958372--77958492 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 49
77958362 TTTATCATAT
* * *
77958372 AACTGGAGGCCTAGCCTCTTTTAAT-AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGG-GGCATAGCC-CTTTTAATAAACTGGGGAAAAGCCCTTTTCGATA
* ** *
77958422 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCATAGCCCTTTT-AATAAACTGGGGAAAAGCCCTTTTCGATA
77958472 AACTGGGGCATAGCCCTTTTA
1 AACTGGGGCATAGCCCTTTTA
77958493 GCACTTCCTC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
48 5 0.08
49 8 0.13
50 47 0.78
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (49 bp):
AACTGGGGCATAGCCCTTTTAATAAACTGGGGAAAAGCCCTTTTCGATA
Done.