Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 265 of 345
Found at i:78667037 original size:40 final size:39
Alignment explanation
Indices: 78666993--78667185 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
78666983 GTTCAAAACA
* * ** * *
78666993 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
78667033 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
78667073 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
78667112 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
78667151 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
78667186 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:78667104 original size:39 final size:39
Alignment explanation
Indices: 78667023--78667185 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
78667013 TATGGTAACC
* *
78667023 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
78667063 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78667102 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78667141 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
78667180 CGCACA
1 CGCACA
78667186 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:78675467 original size:38 final size:39
Alignment explanation
Indices: 78675344--78675563 Score: 309
Period size: 38 Copynumber: 5.6 Consensus size: 39
78675334 TCGTTCAAAC
* * ** * **
78675344 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
78675384 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
78675424 GCCTTCGGGCTTAGCCCGGATATCATAACTCGC-CAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
78675462 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
78675501 GCCTTC-GGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
78675539 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
78675564 CTCGAACATT
Statistics
Matches: 163, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 76 0.47
39 49 0.30
40 38 0.23
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:78675497 original size:77 final size:77
Alignment explanation
Indices: 78675356--78675564 Score: 303
Period size: 77 Copynumber: 2.7 Consensus size: 77
78675346 CTTCGGGACA
* ** * ** * * *
78675356 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACA
78675421 ATTGCCTTCGGGCT
65 ATTGCCTTC-GGCT
*
78675435 TAGCCCGGATATCATAACTCGC-CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAA
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAA
78675499 TTGCCTTCGGCT
66 TTGCCTTCGGCT
78675511 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
78675565 TCGAACATTC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
76 26 0.22
77 62 0.53
78 12 0.10
79 18 0.15
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (77 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAA
TTGCCTTCGGCT
Found at i:78675542 original size:115 final size:118
Alignment explanation
Indices: 78675344--78675563 Score: 320
Period size: 115 Copynumber: 1.9 Consensus size: 118
78675334 TCGTTCAAAC
* **
78675344 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
* *
78675409 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
66 ACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
* * ** *
78675462 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTC-GG-CTTAGCCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
*
78675524 ATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
66 ACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
78675564 CTCGAACATT
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
115 51 0.56
116 2 0.02
117 29 0.32
118 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (118 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCAATT
Found at i:78695663 original size:9 final size:9
Alignment explanation
Indices: 78695649--78695674 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
78695639 GATAAAAATG
78695649 AAATAATAA
1 AAATAATAA
78695658 AAATAATAA
1 AAATAATAA
78695667 AAATAATA
1 AAATAATA
78695675 GGTGTCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAATAA
Found at i:78699752 original size:27 final size:26
Alignment explanation
Indices: 78699704--78699763 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
78699694 GCGAGGCTGC
*
78699704 CAGATATTGTGACGAAGTCACCAGAAA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
78699731 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
78699757 CAGATAT
1 CAGATAT
78699764 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:78699767 original size:2 final size:2
Alignment explanation
Indices: 78699760--78699785 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78699750 ACCAAAACAG
78699760 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
78699786 GTGGCGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78707202 original size:26 final size:26
Alignment explanation
Indices: 78707156--78707205 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
78707146 CGAGGCTGCT
*
78707156 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
*
78707182 AGATATATGTG-CGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
78707206 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:78710410 original size:28 final size:28
Alignment explanation
Indices: 78710378--78710476 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
78710368 GCAATAAGCC
*
78710378 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
78710406 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
78710434 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
78710463 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78710477 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:78718090 original size:28 final size:28
Alignment explanation
Indices: 78718058--78718156 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
78718048 GCAATAAGCC
*
78718058 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
78718086 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
78718114 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
78718143 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78718157 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:78722244 original size:42 final size:42
Alignment explanation
Indices: 78722166--78722245 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
78722156 CTCATAATGT
* *
78722166 CACACGGCCAAGGCACACGCCCGTGTACTGTGCCGTGTCCTC
1 CACACGGCCAAGACACACGCCCGTGTACTCTGCCGTGTCCTC
* * *
78722208 CACACGGCTAAGACACACGGCTGTGT-CTCTGCCCGTGT
1 CACACGGCCAAGACACACGCCCGTGTACTCTG-CCGTGT
78722246 GTTTATTACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 4 0.12
42 28 0.88
ACGTcount: A:0.17, C:0.38, G:0.26, T:0.19
Consensus pattern (42 bp):
CACACGGCCAAGACACACGCCCGTGTACTCTGCCGTGTCCTC
Found at i:78724804 original size:47 final size:47
Alignment explanation
Indices: 78724729--78725088 Score: 567
Period size: 47 Copynumber: 7.5 Consensus size: 47
78724719 TATTAAAATT
78724729 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAA
*
78724778 CGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
78724825 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
78724874 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
78724921 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
78724968 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
78725017 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
78725064 TGTGGAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
78725089 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 187 0.64
49 107 0.36
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:78724893 original size:96 final size:94
Alignment explanation
Indices: 78724729--78725088 Score: 567
Period size: 96 Copynumber: 3.8 Consensus size: 94
78724719 TATTAAAATT
*
78724729 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
78724794 TGTGATAAGGCCTAATGGCCGATGTGATGAA
64 TGTGATAAGGCCTAATGGCCGATGTGATGAA
*
78724825 TGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
78724890 TGTGATAAGGCCTAATGGCCGATGTGATGAA
64 TGTGATAAGGCCTAATGGCCGATGTGATGAA
*
78724921 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
78724986 TGTGATAAGGCCTAATGGCCAATGTGATGAA
64 TGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * * * *
78725017 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATAAATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78725082 TGATAAG
66 TGATAAG
78725089 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
94 60 0.24
96 180 0.73
98 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:78724989 original size:143 final size:143
Alignment explanation
Indices: 78724729--78725088 Score: 621
Period size: 143 Copynumber: 2.5 Consensus size: 143
78724719 TATTAAAATT
*
78724729 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
78724794 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAAT
64 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAAT
*
78724859 GGCCGATGTGATGAA
129 GGCCAATGTGATGAA
78724874 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78724939 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGG
78725004 CCAATGTGATGAA
131 CCAATGTGATGAA
* * * * * * *
78725017 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATAAATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
78725082 TGATAAG
66 TGATAAG
78725089 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 189 0.92
145 17 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGG
CCAATGTGATGAA
Found at i:78752610 original size:18 final size:17
Alignment explanation
Indices: 78752582--78752615 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78752572 CTCATTCATA
78752582 TGTCTGTAAGAATTTAG
1 TGTCTGTAAGAATTTAG
*
78752599 TGTCTAGTAAGAGTTTA
1 TGTCT-GTAAGAATTTA
78752616 CTTGTTGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (17 bp):
TGTCTGTAAGAATTTAG
Found at i:78753942 original size:114 final size:114
Alignment explanation
Indices: 78753737--78753962 Score: 296
Period size: 114 Copynumber: 2.0 Consensus size: 114
78753727 TCCGAGTAAG
* * *
78753737 ATTTCAGTAGTTGTTTACTGGAAACCACCAAGAAATATGTTCGAAGTCAGAAGTTTTCTGCGGTT
1 ATTTCAGTAGTTGTTGACTGGAAACCACCAAGAAATATGTTCAAAGTCAGAAGTTTTCTGCGATT
***
78753802 AGCTGGCTATTATCTGTGTTTAGTAAAAGGATTTTCAATGATTGCTAAT
66 AGCTGGCTATTATCAACGTTTAGTAAAAGGATTTTCAATGATTGCTAAT
* * * *
78753851 ATTTTAGTAGTTGTTGACTGGAAACCTCTAAGAAGCT-TG-TCTAAAGTCAGAAGTTTTCTAG-G
1 ATTTCAGTAGTTGTTGACTGGAAACCACCAAGAA-ATATGTTC-AAAGTCAGAAGTTTTCT-GCG
* *
78753913 ATTAGCTGGCTATTATCAACGTTTTGTAAAAGGTTTTTCAATGATTGCTA
63 ATTAGCTGGCTATTATCAACGTTTAGTAAAAGGATTTTCAATGATTGCTA
78753963 CACCGATGAA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
113 2 0.02
114 93 0.96
115 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.38
Consensus pattern (114 bp):
ATTTCAGTAGTTGTTGACTGGAAACCACCAAGAAATATGTTCAAAGTCAGAAGTTTTCTGCGATT
AGCTGGCTATTATCAACGTTTAGTAAAAGGATTTTCAATGATTGCTAAT
Found at i:78757364 original size:41 final size:41
Alignment explanation
Indices: 78757304--78757591 Score: 362
Period size: 41 Copynumber: 7.0 Consensus size: 41
78757294 TGTAAAACAT
** * *
78757304 AGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTAAAA-AC
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
** * * *
78757344 AGAGCAATAGCGGCATTTTTTGTTAAAACGCCACTAAAAGTC
1 AGAGCAATAGCGGC-GCTTCTGGTAAAACGCCGCTAAAAGTC
*
78757386 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCGAAAAGTC
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
* * * *
78757427 GGAGCAATAGTGGCACTTCTGGTAAAATGCCGCTAAAAGTC
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
*
78757468 AGAGCAATAGCGGCGCTTCTGGTAAAATGCCGCTAAAAGTC
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
* * *
78757509 GGAGCAATAGTGGCGCTTCTGGTAAAACGCCGCTAAAAGTT
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
* * * *
78757550 GGAGCAATAGCGGCGCTTCTAGTAAAACACTGCTAAAAGTC
1 AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
78757591 A
1 A
78757592 TATAACCCCT
Statistics
Matches: 218, Mismatches: 28, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
40 14 0.06
41 189 0.87
42 15 0.07
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (41 bp):
AGAGCAATAGCGGCGCTTCTGGTAAAACGCCGCTAAAAGTC
Found at i:78757888 original size:15 final size:15
Alignment explanation
Indices: 78757844--78757894 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
78757834 CGGTTTAATA
*
78757844 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
78757858 TCTATAGTTTAGGGT
1 TTTATGGTTTAAGGT
78757873 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
78757888 TTAATGG
1 TTTATGG
78757895 CCATGGTTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:78758454 original size:8 final size:7
Alignment explanation
Indices: 78758437--78758557 Score: 120
Period size: 8 Copynumber: 16.3 Consensus size: 7
78758427 AAATAAACTC
*
78758437 AAAAAAT
1 AAAAATT
78758444 AAAAATTT
1 AAAAA-TT
78758452 AAAAAATT
1 -AAAAATT
78758460 AAAAAATT
1 -AAAAATT
78758468 AAAAATT
1 AAAAATT
78758475 -AAAATT
1 AAAAATT
78758481 ATAAAATT
1 A-AAAATT
78758489 AAAAAATT
1 -AAAAATT
78758497 AAAAAATT
1 -AAAAATT
78758505 -AAAATT
1 AAAAATT
78758511 AAAAACTT
1 AAAAA-TT
78758519 AAAAATT
1 AAAAATT
*
78758526 AAAAAATG
1 -AAAAATT
78758534 AAAAACTT
1 AAAAA-TT
78758542 AAAAATT
1 AAAAATT
*
78758549 TAAAATT
1 AAAAATT
78758556 AA
1 AA
78758558 TCAATAGTGG
Statistics
Matches: 100, Mismatches: 5, Indels: 18
0.81 0.04 0.15
Matches are distributed among these distances:
6 12 0.12
7 32 0.32
8 50 0.50
9 6 0.06
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:78758492 original size:45 final size:47
Alignment explanation
Indices: 78758437--78758553 Score: 154
Period size: 45 Copynumber: 2.6 Consensus size: 47
78758427 AAATAAACTC
*
78758437 AAAAAA-TAAAAATTTAAAAAATTAAAAAATTAAAAA-TT-AAAATT
1 AAAAAATTAAAAAATTAAAAAATTAAAAAATTAAAAACTTAAAAATT
*
78758481 ATAAAATTAAAAAATTAAAAAATT--AAAATTAAAAACTTAAAAATT
1 AAAAAATTAAAAAATTAAAAAATTAAAAAATTAAAAACTTAAAAATT
* * *
78758526 AAAAAATGAAAAACTTAAAAATTTAAAA
1 AAAAAATTAAAAAATTAAAAAATTAAAA
78758554 TTAATCAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
43 11 0.18
44 7 0.11
45 42 0.68
47 2 0.03
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (47 bp):
AAAAAATTAAAAAATTAAAAAATTAAAAAATTAAAAACTTAAAAATT
Found at i:78758500 original size:37 final size:36
Alignment explanation
Indices: 78758438--78758557 Score: 161
Period size: 37 Copynumber: 3.2 Consensus size: 36
78758428 AATAAACTCA
*
78758438 AAAAATAAAAATTTAAAAAATTAAAAAATTAAAAATT
1 AAAATTAAAAA-TTAAAAAATTAAAAAATTAAAAATT
78758475 AAAATTATAAAATTAAAAAATTAAAAAATT-AAAATT
1 AAAATTA-AAAATTAAAAAATTAAAAAATTAAAAATT
* *
78758511 AAAAACTTAAAAATTAAAAAATGAAAAACTTAAAAATTT
1 -AAAA-TTAAAAATTAAAAAATTAAAAAATTAAAAA-TT
78758550 AAAATTAA
1 AAAATTAA
78758558 TCAATAGTGG
Statistics
Matches: 75, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
36 6 0.08
37 52 0.69
38 15 0.20
39 2 0.03
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.28
Consensus pattern (36 bp):
AAAATTAAAAATTAAAAAATTAAAAAATTAAAAATT
Found at i:78758554 original size:45 final size:42
Alignment explanation
Indices: 78758424--78758557 Score: 144
Period size: 45 Copynumber: 3.1 Consensus size: 42
78758414 TAAACCTAAA
* * * *
78758424 TAAAAA-TAAACTCAAAAAATAAAAATTTAAAAAATTAAAAAAT
1 TAAAAATTAAAATTAAAAAATAAAAAATT-AAAAATT-TAAAAT
* *
78758467 TAAAAATTAAAATTATAAAATTAAAAAATTAAAAAATTAAAAT
1 TAAAAATTAAAATTA-AAAAATAAAAAATTAAAAATTTAAAAT
*
78758510 TAAAAACTTAAAAATTAAAAAATGAAAAACTTAAAAATTTAAAAT
1 TAAAAA-TT-AAAATTAAAAAAT-AAAAAATTAAAAATTTAAAAT
78758555 TAA
1 TAA
78758558 TCAATAGTGG
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
43 17 0.22
44 19 0.25
45 41 0.53
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (42 bp):
TAAAAATTAAAATTAAAAAATAAAAAATTAAAAATTTAAAAT
Found at i:78762502 original size:43 final size:43
Alignment explanation
Indices: 78762454--78762539 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
78762444 CGCTAAAGGT
* * *
78762454 CGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGACATTTAGCGG
1 CGTTTGTGGAAAAAGCGCCACTAAAGGTCATGACATTTAGCGG
*
78762497 CGTTTGTGGAAAAAGCGCCACTAAAGGTCATGACCTTTAGCGG
1 CGTTTGTGGAAAAAGCGCCACTAAAGGTCATGACATTTAGCGG
78762540 AATTTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (43 bp):
CGTTTGTGGAAAAAGCGCCACTAAAGGTCATGACATTTAGCGG
Found at i:78764097 original size:23 final size:22
Alignment explanation
Indices: 78764066--78764143 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 22
78764056 TTTAGCTCAC
*
78764066 TAGATCTTACCGTTTCATATCAA
1 TAGAGCTTACCGTTTCA-ATCAA
* * * **
78764089 TAGAGCTTA-CTTTTTAGCTTGA
1 TAGAGCTTACCGTTTCA-ATCAA
*
78764111 TAGAGCTTACCGTTTCAACTCAT
1 TAGAGCTTACCGTTTCAA-TCAA
78764134 TAGAGCTTAC
1 TAGAGCTTAC
78764144 TATTCATCAG
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (22 bp):
TAGAGCTTACCGTTTCAATCAA
Found at i:78764120 original size:45 final size:45
Alignment explanation
Indices: 78764043--78764144 Score: 127
Period size: 45 Copynumber: 2.2 Consensus size: 45
78764033 TCAGCTCATA
*
78764043 AGAGCTTACTATTTTTAGCTCACTAGATCTTACCGTTTCATA-TCAAT
1 AGAGCTTAC--TTTTTAGCTCACTAGAGCTTACCGTTTCA-ACTCAAT
* *
78764090 AGAGCTTACTTTTTAGCTTGA-TAGAGCTTACCGTTTCAACTCATT
1 AGAGCTTACTTTTTAGC-TCACTAGAGCTTACCGTTTCAACTCAAT
78764135 AGAGCTTACT
1 AGAGCTTACT
78764145 ATTCATCAGC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
44 1 0.02
45 38 0.76
46 2 0.04
47 9 0.18
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (45 bp):
AGAGCTTACTTTTTAGCTCACTAGAGCTTACCGTTTCAACTCAAT
Found at i:78765516 original size:20 final size:20
Alignment explanation
Indices: 78765491--78765531 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
78765481 TATAAGTACA
78765491 TATTGAATGTGAATAA-ATGT
1 TATTGAATGT-AATAAGATGT
*
78765511 TATTGACTGTAATAAGATGT
1 TATTGAATGTAATAAGATGT
78765531 T
1 T
78765532 TTTGGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (20 bp):
TATTGAATGTAATAAGATGT
Found at i:78768166 original size:40 final size:40
Alignment explanation
Indices: 78768072--78768296 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
78768062 TATTCGAATG
*
78768072 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
78768113 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
78768153 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
78768193 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
78768233 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
78768273 ACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
78768297 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 126 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:78768252 original size:80 final size:80
Alignment explanation
Indices: 78768072--78768332 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
78768062 TATTCGAATG
* * * *
78768072 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
78768137 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
78768153 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
78768218 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
78768233 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
78768298 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
78768312 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
78768333 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 94 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:78768288 original size:120 final size:120
Alignment explanation
Indices: 78768072--78768332 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 120
78768062 TATTCGAATG
* * *
78768072 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * * *
78768137 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
78768193 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
78768256 CATTTATGCTAG-TGACCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
78768312 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
78768333 ATTACTTGAG
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 56 0.46
121 31 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:78772547 original size:40 final size:41
Alignment explanation
Indices: 78772488--78772736 Score: 212
Period size: 40 Copynumber: 6.3 Consensus size: 41
78772478 CTAACGGGGT
* *
78772488 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
* * ** *
78772528 TAAGTCCCGAAGGCGTTTGTGCGA-TTACAAAT-TCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
* * ** *
78772567 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAAT-TCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
* *
78772607 TAAG-CCTCGAAGGCATTTGTGCAAGTTATT-ATATCCGGGC
1 TAAGTCC-CGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
* * ** *
78772647 TAAGTCCCGAAGGCATCTGTGCTAGTGA-CCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
* * *
78772687 TAAGACCCGAAGGC-CTTGTGCGAGTGGTT-ATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
*
78772725 TAAATCCCGAAG
1 TAAGTCCCGAAG
78772737 ATAATTGGGT
Statistics
Matches: 176, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
38 12 0.07
39 53 0.30
40 109 0.62
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGATTAATATCCGGGC
Found at i:78772572 original size:39 final size:40
Alignment explanation
Indices: 78772488--78772711 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
78772478 CTAACGGGGT
* * * **
78772488 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* *
78772528 TAAGTCCCGAAGGCGTTTGTGCGA-TTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* *
78772567 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
* **
78772607 TAAG-CCTCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCC-CGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* * * * *
78772647 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAAT-TCCGGGC
* *
78772687 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
78772712 GGTTATATCC
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 46 0.29
40 109 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
Found at i:78772619 original size:79 final size:80
Alignment explanation
Indices: 78772488--78772700 Score: 218
Period size: 79 Copynumber: 2.7 Consensus size: 80
78772478 CTAACGGGGT
* * ** * *
78772488 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCGTTTGTGCGA-
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG
*
78772552 TTACAAAT-TCTGGGC
66 TTA-AAATATCCGGGC
* * *
78772567 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCTGGGCTAAG-CCTCGAAGGCATTTGTGCAA
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGGCTAAGTCC-CGAAGGCATTTGTGCAA
**
78772631 GTTATTATATCCGGGC
65 GTTAAAATATCCGGGC
* * * * *
78772647 TAAGTCCCGAAGGCATCTGTGCTAGTGAC-CATATCCGGACTAAGACCCGAAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACAAAT-TCCGGGCTAAGTCCCGAAGGC
78772701 CTTGTGCGAG
Statistics
Matches: 110, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.51
80 50 0.45
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACAAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG
TTAAAATATCCGGGC
Found at i:78772706 original size:119 final size:119
Alignment explanation
Indices: 78772495--78772711 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 119
78772485 GGTTAAGTCC
* * * *
78772495 CGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCGTTTGTGCGATTACAAAT
1 CGAAGACATTTGTGCAAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATCTGTGCGATGACAAAT
* * * *
78772560 TCTGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTCTGGGCTAAGCCT
66 TCCGGACTAAGACCCGAAGGCTCTTGTGCGAGTTACAAATTCTGGGCTAAGCCT
* * * *
78772614 CGAAGGCATTTGTGCAAGTTATT-ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGAC-C
1 CGAAGACATTTGTGCAAGTGATTAAT-TCCGGGCTAAGTCCCGAAGGCATCTGTGCGA-TGACAA
78772677 ATATCCGGACTAAGACCCGAAGGC-CTTGTGCGAGT
64 AT-TCCGGACTAAGACCCGAAGGCTCTTGTGCGAGT
78772712 GGTTATATCC
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
118 2 0.02
119 60 0.72
120 21 0.25
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (119 bp):
CGAAGACATTTGTGCAAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATCTGTGCGATGACAAAT
TCCGGACTAAGACCCGAAGGCTCTTGTGCGAGTTACAAATTCTGGGCTAAGCCT
Found at i:78779008 original size:28 final size:28
Alignment explanation
Indices: 78778976--78779059 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
78778966 ATTATCCGGT
78778976 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAGCCTGCACTTAGTACTAC
* * *
78779004 ACACGT-G-A-CCT-AAC-CA-T-CTGAT
1 ACACGTAGTAGCCTGCACTTAGTACT-AC
78779026 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAGCCTGCACTTAGTACTAC
78779054 ACACGT
1 ACACGT
78779060 GATCGAAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (28 bp):
ACACGTAGTAGCCTGCACTTAGTACTAC
Found at i:78779050 original size:50 final size:49
Alignment explanation
Indices: 78778933--78779107 Score: 228
Period size: 50 Copynumber: 3.5 Consensus size: 49
78778923 CTGGTACGCA
78778933 TAGTAGCCTGCACTTAGTACTACACA--TGCACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTG-ACCAATTATCCGGTACACG
** * *
78778981 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
78779031 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
78779082 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
78779108 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
48 26 0.23
49 3 0.03
50 47 0.42
51 35 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:78779115 original size:101 final size:98
Alignment explanation
Indices: 78778933--78779115 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 98
78778923 CTGGTACGCA
*
78778933 TAGTAGCCTGCACTTAGTACTACACATGCACCAATTATCCGGTACACGTAGTAGCCTGCACTTAG
1 TAGTAGCCTGCACTTAGTACTACACATGCACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
*
78778998 TACTACACACGTGACCTAACCATCTGATACACG
66 TACTACACACGCGACCTAACCATCTGATACACG
* * *
78779031 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACA--TGCA-CCAA-TTATCCGGTACACATAGTAGCCTGCAC
*
78779095 TTAGTACTACACATGCGACCT
62 TTAGTACTACACACGCGACCT
78779116 CACAATAGAT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
98 26 0.35
99 1 0.01
100 5 0.07
101 43 0.57
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGCACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCGACCTAACCATCTGATACACG
Found at i:78784721 original size:49 final size:50
Alignment explanation
Indices: 78784652--78784791 Score: 158
Period size: 49 Copynumber: 2.8 Consensus size: 50
78784642 TAGCCAAAGC
* * *
78784652 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATTCGA-CCAA-T
1 TATCCGGTACACATACTAGCCTGCACTTAGTACTACACATT-GATCCAAGT
* * * *
78784701 TATCCGGTACACGTACTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATACTAGCCTGCACTTAGTACTACACA-TTGATCCAAGT
* * *
78784752 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACAT
1 TATCCGGTACACATACTAGCCTGCACTTAGTACTACACAT
78784792 GTGACCTCAC
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
49 36 0.48
50 4 0.05
51 35 0.47
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TATCCGGTACACATACTAGCCTGCACTTAGTACTACACATTGATCCAAGT
Found at i:78784773 original size:51 final size:48
Alignment explanation
Indices: 78784652--78784797 Score: 175
Period size: 51 Copynumber: 2.9 Consensus size: 48
78784642 TAGCCAAAGC
* *
78784652 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATTCGACCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACAGT-GACCAAT
* * * * *
78784701 TATCCGGTACACGTACTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GTGA-CCAA-T
*
78784752 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GTGACC
78784798 TCACAATAGA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
49 36 0.45
50 5 0.06
51 39 0.49
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACAGTGACCAAT
Found at i:78793675 original size:40 final size:39
Alignment explanation
Indices: 78793615--78793778 Score: 150
Period size: 40 Copynumber: 4.1 Consensus size: 39
78793605 TCGAAATTTA
* ** *
78793615 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
78793655 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
*
78793695 CCGGATATAACAACTCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * * *
78793735 CCGGATATAATC-ATTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
78793775 CCGG
1 CCGG
78793779 GTATCATTCA
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
40 98 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:78798598 original size:40 final size:40
Alignment explanation
Indices: 78798553--78798682 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
78798543 CGGAATACAA
78798553 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
78798593 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * * *
78798633 CCTGATGTAGCCACTAGCAC-AATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
78798673 CCGGATATAA
1 CCGGATATAA
78798683 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.96
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:78804506 original size:40 final size:40
Alignment explanation
Indices: 78804457--78804624 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
78804447 TCTTCGGAAT
* * *
78804457 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
78804496 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
78804536 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
78804576 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
78804616 TTAGCCCGG
1 TTAGCCCGG
78804625 GTATCATTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:78804584 original size:80 final size:80
Alignment explanation
Indices: 78804448--78804624 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
78804438 AACCGAGTTT
* * * * **
78804448 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
78804512 AACTT-GCACAAATGC
66 AA-TTAGCACAAATGC
* ** *
78804527 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
* *
78804591 TCATTAGCATAAATGC
65 TAATTAGCACAAATGC
78804607 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
78804625 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 12 0.15
80 68 0.83
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AATTAGCACAAATGC
Found at i:78806712 original size:46 final size:46
Alignment explanation
Indices: 78806662--78806837 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78806652 TATTTGGGCA
78806662 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78806708 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78806755 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78806801 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78806838 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78806817 original size:93 final size:93
Alignment explanation
Indices: 78806658--78806829 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78806648 TGGATATTTG
* *
78806658 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78806723 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78806751 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78806816 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78806830 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78812588 original size:46 final size:46
Alignment explanation
Indices: 78812535--78812710 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
78812525 ATTTTGGGCA
78812535 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
78812581 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
78812628 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
78812674 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78812711 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:78812690 original size:93 final size:93
Alignment explanation
Indices: 78812531--78812702 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78812521 TAGGATTTTG
* *
78812531 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78812596 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
78812624 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78812689 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78812703 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78813639 original size:40 final size:40
Alignment explanation
Indices: 78813555--78813705 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
78813545 GGATATAGCG
* * * * ***
78813555 ACTCGCTCAAAAGCCTTC-GGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
78813594 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
78813634 ACTCGCACAAATGCCTTC-GGACTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
*
78813673 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
78813706 CATCATTCGA
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 39 0.43
40 52 0.57
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:78821646 original size:40 final size:40
Alignment explanation
Indices: 78821562--78821713 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
78821552 GATATAGCGT
* * * * ** *
78821562 CTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATAG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
* * *
78821602 CTCGCACGAATGCCTTCGGGACTTAACCCGGATTTGGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
* *
78821642 CTCGCACAAATGCCTTC-GGACCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGTAA
* *
78821682 CTTAGCATAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
78821714 CATCATTCGA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.86
41 10 0.11
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
Found at i:78825646 original size:40 final size:40
Alignment explanation
Indices: 78825582--78825783 Score: 264
Period size: 40 Copynumber: 5.0 Consensus size: 40
78825572 TGGATGATAA
* * *
78825582 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
78825622 CCGGGCTAAGTCCCAAAGGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
78825662 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
78825702 CTGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
78825742 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
78825782 CC
1 CC
78825784 AGTTAAATCT
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
39 3 0.02
40 140 0.98
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:78831086 original size:29 final size:28
Alignment explanation
Indices: 78831052--78831154 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78831042 TACTCAATCA
*
78831052 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78831081 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78831110 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78831139 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78831155 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78839106 original size:29 final size:28
Alignment explanation
Indices: 78839072--78839174 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
78839062 TACTCAATCA
*
78839072 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
78839101 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
78839130 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
78839159 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
78839175 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:78841703 original size:49 final size:49
Alignment explanation
Indices: 78841585--78841859 Score: 452
Period size: 49 Copynumber: 5.7 Consensus size: 49
78841575 GTAGGAGATG
*
78841585 TATATATGTGATAAGG-CTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78841631 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
78841680 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78841729 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
78841776 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
78841825 TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATG
78841860 TGTGACAGCC
Statistics
Matches: 212, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
46 16 0.08
47 70 0.33
49 126 0.59
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:78841779 original size:145 final size:144
Alignment explanation
Indices: 78841585--78841859 Score: 532
Period size: 145 Copynumber: 1.9 Consensus size: 144
78841575 GTAGGAGATG
*
78841585 TATATATGTGATAAGGCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCT
1 TATACATGTGATAAGGCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCT
78841650 AATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
66 AATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
78841715 AATGTGAAAGTGTA
131 AATGTGAAAGTGTA
78841729 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGG-CTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
78841794 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
65 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
78841859 G
130 G
78841860 TGTGACAGCC
Statistics
Matches: 129, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
144 15 0.12
145 114 0.88
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (144 bp):
TATACATGTGATAAGGCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
AATGTGAAAGTGTA
Found at i:78841780 original size:96 final size:95
Alignment explanation
Indices: 78841584--78841859 Score: 448
Period size: 96 Copynumber: 2.9 Consensus size: 95
78841574 TGTAGGAGAT
*
78841584 GTATATATGTGATAAGG-CTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGG
* * *
78841647 CCTAATGGCCGATGTGATGAATGTGAAGGT
66 CCTAATGGCCAATGTGATGAATGTGAAAGA
78841677 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATA
78841742 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
63 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
78841775 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAG
78841840 GCCTAATGGCCAATGTGATG
65 GCCTAATGGCCAATGTGATG
78841860 TGTGACAGCC
Statistics
Matches: 171, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
93 1 0.01
95 16 0.09
96 115 0.67
98 39 0.23
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (95 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:78843623 original size:59 final size:60
Alignment explanation
Indices: 78843527--78843659 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
78843517 GACAAGATTG
* * *
78843527 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
78843587 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
78843646 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78843660 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:78843672 original size:29 final size:29
Alignment explanation
Indices: 78843557--78843659 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
78843547 AAAATTGTAC
*
78843557 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
78843586 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
78843616 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
78843645 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
78843660 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:78851156 original size:59 final size:60
Alignment explanation
Indices: 78851060--78851192 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
78851050 GACAAGATTG
* * *
78851060 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
78851120 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
78851179 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78851193 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:78851205 original size:29 final size:29
Alignment explanation
Indices: 78851090--78851192 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
78851080 AAAATTGTAC
*
78851090 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
78851119 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
78851149 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
78851178 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
78851193 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:78852724 original size:96 final size:96
Alignment explanation
Indices: 78852597--78852994 Score: 701
Period size: 96 Copynumber: 4.1 Consensus size: 96
78852587 GGGTGTTACA
*
78852597 TGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
78852660 GTATATATGTGATAAGGCCTAATGGCCGATG
66 GTATATATGTGATAAGGCCTAATGGCCGATG
* *
78852691 TGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
78852756 GTATATACATGTGATAAGGCCTAATGGCCAATG
66 GTATAT--ATGTGATAAGGCCTAATGGCCGATG
*
78852789 TGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
78852854 GTATATATGTGATAAGGCCTAATGGCCGATG
66 GTATATATGTGATAAGGCCTAATGGCCGATG
* *
78852885 TGATGAGTGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
78852950 GTATATATGTGATAAGGCCTAATGGCCGATG
66 GTATATATGTGATAAGGCCTAATGGCCGATG
78852981 TGATGAATGTGAAA
1 TGATGAATGTGAAA
78852995 CATATGTGTG
Statistics
Matches: 287, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 15 0.05
96 180 0.63
98 92 0.32
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGA
GTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:78852733 original size:49 final size:47
Alignment explanation
Indices: 78852597--78852994 Score: 634
Period size: 49 Copynumber: 8.3 Consensus size: 47
78852587 GGGTGTTACA
78852597 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
*
78852644 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
* *
78852691 TGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATG
*
78852740 TGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGAGTATAT--ATGTGATAAGGCCTAATGGCCAATG
*
78852789 TGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGAGTATAT--ATGTGATAAGGCCTAATGGCCAATG
*
78852838 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
* * *
78852885 TGATGAGTGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATG
1 TGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATG
*
78852934 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
78852981 TGATGAATGTGAAA
1 TGATGAATGTGAAA
78852995 CATATGTGTG
Statistics
Matches: 330, Mismatches: 15, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
47 147 0.45
49 183 0.55
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATG
Found at i:78853040 original size:48 final size:48
Alignment explanation
Indices: 78852986--78853183 Score: 328
Period size: 48 Copynumber: 4.2 Consensus size: 48
78852976 CGATGTGATG
* *
78852986 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGACT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
78853034 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
78853082 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
78853130 AATGTGAAATATATGTGTG--ATGTGTGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
78853176 AATGTGAA
1 AATGTGAA
78853184 TGTTGTAACA
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
46 33 0.23
48 109 0.77
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:78853277 original size:37 final size:37
Alignment explanation
Indices: 78853223--78853313 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
78853213 AACTTGGAAA
*
78853223 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
78853261 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
78853298 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
78853314 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:78859621 original size:28 final size:29
Alignment explanation
Indices: 78859589--78859687 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
78859579 ATAATAAGCC
*
78859589 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
78859617 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
78859645 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
78859674 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78859688 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:78868699 original size:24 final size:23
Alignment explanation
Indices: 78868672--78868740 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 23
78868662 AGATTTCCTT
78868672 CCTTATCTACTCCTAAATCCTATC
1 CCTTATC-ACTCCTAAATCCTATC
78868696 CCTTATCATCTCCTAAATCCTATC
1 CCTTATCA-CTCCTAAATCCTATC
* *
78868720 CTTTATCAACTCGTAAATCCT
1 CCTTATC-ACTCCTAAATCCT
78868741 CTCTTGACAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.01, T:0.38
Consensus pattern (23 bp):
CCTTATCACTCCTAAATCCTATC
Found at i:78874983 original size:27 final size:26
Alignment explanation
Indices: 78874946--78875057 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
78874936 AGCATGGCTG
* *
78874946 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
78874972 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
78875000 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
78875027 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
78875054 CCAG
1 CCAG
78875058 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:78875038 original size:54 final size:54
Alignment explanation
Indices: 78874946--78875057 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
78874936 AGCATGGCTG
* *
78874946 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
78875000 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
78875054 CCAG
1 CCAG
78875058 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:78876496 original size:24 final size:24
Alignment explanation
Indices: 78876469--78876539 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
78876459 CTAGATTTCC
*
78876469 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCTACTCCTAAATCCTA
78876493 TCCCTTAT-TAACTCCTAAATCCTA
1 TCCCTTATCT-ACTCCTAAATCCTA
*
78876517 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCTACTCCTAAATCCT
78876540 CTCCTGACAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.02
24 42 0.98
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCTACTCCTAAATCCTA
Found at i:78880266 original size:15 final size:15
Alignment explanation
Indices: 78880246--78880277 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
78880236 TTCTTAACTA
78880246 CATCCTGGTTCGACT
1 CATCCTGGTTCGACT
78880261 CATCCTGGTTCGACT
1 CATCCTGGTTCGACT
78880276 CA
1 CA
78880278 ACTAACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.19, T:0.31
Consensus pattern (15 bp):
CATCCTGGTTCGACT
Found at i:78881833 original size:29 final size:29
Alignment explanation
Indices: 78881772--78881890 Score: 168
Period size: 29 Copynumber: 4.1 Consensus size: 29
78881762 ACATACATGT
* * *
78881772 ATATGGCTCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
78881800 ATATGACCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
78881829 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
**
78881858 ATATGGCCCATTAGGAGCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
78881887 ATAT
1 ATAT
78881891 TCATGCTTTC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 15 0.19
29 66 0.81
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:78881970 original size:17 final size:18
Alignment explanation
Indices: 78881948--78881981 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78881938 TGCCTATTAT
78881948 GGGCCCA-ATAGCCCATC
1 GGGCCCACATAGCCCATC
*
78881965 GGGCCCACTTAGCCCAT
1 GGGCCCACATAGCCCAT
78881982 TCTAGCCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.41, G:0.24, T:0.15
Consensus pattern (18 bp):
GGGCCCACATAGCCCATC
Found at i:78888481 original size:68 final size:70
Alignment explanation
Indices: 78888409--78888606 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78888399 ACACCCTGTA
* * * *
78888409 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78888471 ATAAAT
65 ATAAAT
*
78888477 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78888542 ATAAAT
65 ATAAAT
*
78888548 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78888607 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78888520 original size:41 final size:41
Alignment explanation
Indices: 78888475--78888592 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78888465 TGAAAGATAA
78888475 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78888516 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78888546 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78888587 ATGTAG
1 ATGTAG
78888593 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78888532 original size:71 final size:71
Alignment explanation
Indices: 78888443--78888606 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78888433 GAGATGTATC
78888443 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78888508 AGGACA
66 AGGACA
78888514 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78888579 AGGACA
66 AGGACA
78888585 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78888607 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78896051 original size:68 final size:70
Alignment explanation
Indices: 78895979--78896176 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78895969 ACACCCTGTA
* * * *
78895979 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78896041 ATAAAT
65 ATAAAT
*
78896047 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78896112 ATAAAT
65 ATAAAT
*
78896118 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78896177 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78896090 original size:41 final size:41
Alignment explanation
Indices: 78896045--78896162 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78896035 TGAAAGATAA
78896045 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78896086 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78896116 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78896157 ATGTAG
1 ATGTAG
78896163 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78896102 original size:71 final size:71
Alignment explanation
Indices: 78896013--78896176 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78896003 GAGATGTATC
78896013 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78896078 AGGACA
66 AGGACA
78896084 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78896149 AGGACA
66 AGGACA
78896155 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78896177 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78898993 original size:41 final size:39
Alignment explanation
Indices: 78898870--78898994 Score: 133
Period size: 39 Copynumber: 3.1 Consensus size: 39
78898860 CACGTGTTTG
*
78898870 ATTCAAGGGTACCAAAGTACAAATAGGGACACGTATGCGC
1 ATTC-AGGGTACCAAAGTACAAATAGGGGCACGTATGCGC
* ** * * *
78898910 ATTTAGGGTACCAAAGTATGAATAGCGGCACATATGCAC
1 ATTCAGGGTACCAAAGTACAAATAGGGGCACGTATGCGC
* * *
78898949 ATTCAGGGGTAACCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCA-GGGT-ACCAAAGTACAAATAGGGGCACGTATGCGC
78898990 ATTCA
1 ATTCA
78898995 TCCAATAATT
Statistics
Matches: 67, Mismatches: 16, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
39 33 0.49
40 7 0.10
41 27 0.40
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (39 bp):
ATTCAGGGTACCAAAGTACAAATAGGGGCACGTATGCGC
Found at i:78900170 original size:6 final size:6
Alignment explanation
Indices: 78900153--78900191 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
78900143 AATTCCAACC
*
78900153 AAAATT -AAATT AAAATT AAAATT AAAATAA AAAATT AAA
1 AAAATT AAAATT AAAATT AAAATT AAAAT-T AAAATT AAA
78900192 TAATTCCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
6 19 0.66
7 5 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
AAAATT
Found at i:78901101 original size:30 final size:30
Alignment explanation
Indices: 78901065--78901124 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78901055 ATTCCCAGCC
78901065 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
78901095 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
78901125 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:78901846 original size:48 final size:49
Alignment explanation
Indices: 78901775--78902009 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
78901765 TGAGGTCACG
78901775 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTGGTCGCA
* * * * * * *
78901823 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-A-TTTGGTCGCA
* * * *
78901874 TGTGTAGTACTAAGTACA-GCTACTACGTGTATCAGATGGTTAGGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ATTTGGTCGCA
*
78901921 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTGGTCGCA
* *
78901971 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
78902010 GCTTCGGCTA
Statistics
Matches: 156, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 56 0.36
49 59 0.38
50 17 0.11
51 23 0.15
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTGGTCGCA
Found at i:78901941 original size:99 final size:96
Alignment explanation
Indices: 78901770--78902008 Score: 311
Period size: 99 Copynumber: 2.4 Consensus size: 96
78901760 TATTGTGAGG
*
78901770 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTTGGTCGCATGTGTAGTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTAGGTCG-ATGTGTAGTACTA
* *
78901835 AGTGCAGGCTACTATGCGTACCTGATAACTTCGA
65 AGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* *
78901869 TCACGTGTGTAGTACTAAGTACA-GCTACTACGTGTATCAGATGGTTAGGTC-AGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TTAGGTCGA-TGTGTAGTAC
* *
78901932 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
63 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * *
78901966 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
78902009 AGCTTCGGCT
Statistics
Matches: 123, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
97 21 0.17
98 37 0.30
99 59 0.48
100 6 0.05
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (96 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTTAGGTCGATGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:78901959 original size:49 final size:48
Alignment explanation
Indices: 78901767--78902009 Score: 262
Period size: 48 Copynumber: 5.0 Consensus size: 48
78901757 AGCTATTGTG
78901767 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TT
1 AGGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATT
* * * *
78901815 TGGTC-GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCAG--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-A-TT
* * * * *
78901866 CGATCACGTGTGTAGTACTAAGTACA-GCTACTACGTGTATCAGATGGTT
1 AGGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ATT
78901915 AGGTCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ATT
* *
78901964 -GGTC-GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCAG--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
78902010 GCTTCGGCTA
Statistics
Matches: 164, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 62 0.38
49 62 0.38
50 15 0.09
51 22 0.13
53 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
AGGTCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATT
Found at i:78904762 original size:16 final size:15
Alignment explanation
Indices: 78904713--78904762 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
78904703 GTGCTGTAAA
* *
78904713 TTGGATTTTCGTATC
1 TTGGATTTCCTTATC
* *
78904728 ATGGATTTCTTTATC
1 TTGGATTTCCTTATC
78904743 TTGGATTTCCTTATTC
1 TTGGATTTCCTTA-TC
78904759 TTGG
1 TTGG
78904763 GTTCTCTGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 22 0.79
16 6 0.21
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (15 bp):
TTGGATTTCCTTATC
Found at i:78907573 original size:49 final size:48
Alignment explanation
Indices: 78907514--78907703 Score: 143
Period size: 50 Copynumber: 3.8 Consensus size: 48
78907504 TGAGGTCACG
*
78907514 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATTGTT-GGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATAGTTAGGTC-CA
** * * * * *
78907563 TGTGTAGTACTAAGCACAGGCTGCCATAC--GTACCTGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCT-AC-TACGTGTA-CAGAT-AGTTAGGTC-CA
* * *
78907614 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATATGGTTAGGTCAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAGTTAGGTCCA
* * *
78907663 GTGTGTAGTACTAACTGCAGGCTACTATGCGTACCAGATAG
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAG
78907704 CTTCGGCTAG
Statistics
Matches: 108, Mismatches: 25, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
49 30 0.28
50 44 0.41
51 34 0.31
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAGTTAGGTCCA
Found at i:78925435 original size:28 final size:28
Alignment explanation
Indices: 78925403--78925467 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
78925393 ATTTACTAGA
*
78925403 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
78925431 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
78925459 ATACCCCTA
1 ATACCCCTA
78925468 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:78925617 original size:28 final size:29
Alignment explanation
Indices: 78925573--78925646 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
78925563 AGGAAGCGTC
* *
78925573 CTGGTGGCTA-TGCCACAAATTATCTGT-T
1 CTGGTGGC-ACTGTCACAAAATATCTGTAT
78925601 CTGGTGGCACTGTCACAAAATATCTGTAT
1 CTGGTGGCACTGTCACAAAATATCTGTAT
* * *
78925630 CTAGTGACTCTGTCACA
1 CTGGTGGCACTGTCACA
78925647 TTTTTTGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 23 0.59
29 15 0.38
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (29 bp):
CTGGTGGCACTGTCACAAAATATCTGTAT
Found at i:78925643 original size:29 final size:28
Alignment explanation
Indices: 78925586--78925646 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
78925576 GTGGCTATGC
* * *
78925586 CACAAATTATCTGTTCTGGTGGCACTGT
1 CACAAAATATCTGTTCTAGTGACACTGT
*
78925614 CACAAAATATCTGTATCTAGTGACTCTGT
1 CACAAAATATCTGT-TCTAGTGACACTGT
78925643 CACA
1 CACA
78925647 TTTTTTGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (28 bp):
CACAAAATATCTGTTCTAGTGACACTGT
Found at i:78926122 original size:19 final size:19
Alignment explanation
Indices: 78926098--78926136 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
78926088 CTTTTAATTA
* *
78926098 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
78926117 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
78926136 T
1 T
78926137 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:78933245 original size:28 final size:28
Alignment explanation
Indices: 78933213--78933277 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
78933203 ATTTACTATA
*
78933213 ATACCCCTATGTATACAAAATTACCATT
1 ATACCCCTATGTATACAAAATGACCATT
* * *
78933241 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATACAAAATGACCATT
78933269 ATACCCCTA
1 ATACCCCTA
78933278 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATACAAAATGACCATT
Found at i:78933427 original size:28 final size:29
Alignment explanation
Indices: 78933383--78933456 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
78933373 AGGAAGCGTC
* *
78933383 CTGGTGGCTA-TGCCACAAATTATCTGT-T
1 CTGGTGGC-ACTGTCACAAAATATCTGTAT
78933411 CTGGTGGCACTGTCACAAAATATCTGTAT
1 CTGGTGGCACTGTCACAAAATATCTGTAT
* *
78933440 CTGGTGACTCTGTCACA
1 CTGGTGGCACTGTCACA
78933457 TTTTCTGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 23 0.57
29 16 0.40
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (29 bp):
CTGGTGGCACTGTCACAAAATATCTGTAT
Found at i:78943553 original size:17 final size:19
Alignment explanation
Indices: 78943511--78943556 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
78943501 ACGAAATTTT
*
78943511 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
78943530 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
78943548 AA-TATTATT
1 AATTATTATT
78943557 GCATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:78949382 original size:48 final size:46
Alignment explanation
Indices: 78949235--78949399 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 46
78949225 GACAAGAGTT
* * *
78949235 AATGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-CGAGATGTAGGCC
1 AATGTAAGACCATGTCTGGGACATGGCATCAG-CTACAAGATGT--GTC
* *
78949281 AATGTAAGA-CATGTTTGGGACAT-GCATCGGCTACAAGATGTGTC
1 AATGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGATGTGTC
*
78949325 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGTATAG-TGGTGTC
1 AATGTAAGACCATGTCTGGGACATGGCATCAGCTAC--A-AGAT-GTGTC
*
78949373 AATGTAAGACCATGACTGGGACATGGC
1 AATGTAAGACCATGTCTGGGACATGGC
78949400 GTCAACCTCG
Statistics
Matches: 104, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
44 10 0.10
45 17 0.16
46 43 0.41
47 2 0.02
48 32 0.31
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AATGTAAGACCATGTCTGGGACATGGCATCAGCTACAAGATGTGTC
Found at i:78950692 original size:20 final size:21
Alignment explanation
Indices: 78950653--78950692 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
78950643 GTTATAATGA
*
78950653 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
78950674 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
78950693 ATTTCAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:78955553 original size:8 final size:8
Alignment explanation
Indices: 78955540--78955564 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
78955530 AGATTTTGGA
78955540 TCAAGAAG
1 TCAAGAAG
78955548 TCAAGAAG
1 TCAAGAAG
78955556 TCAAGAAG
1 TCAAGAAG
78955564 T
1 T
78955565 TAAGGAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.16
Consensus pattern (8 bp):
TCAAGAAG
Found at i:78957087 original size:92 final size:98
Alignment explanation
Indices: 78956928--78957190 Score: 287
Period size: 94 Copynumber: 2.8 Consensus size: 98
78956918 TGTGCCAGTG
* ** * *
78956928 TAAGA-CATGTCTGGGACAT-GCATC-GACCAC-ATTTTGAGAGCCAGTGTAAGACCATGTATGG
1 TAAGACCATGTCTGGGACATGGCATCAG-CCTCGATGATGATAGTCAGTGTAAGACCATGTATGG
*
78956989 GACATGGCATCGGCATTGAGA-TGAGAGCTAGTA
65 GACATGGCATCGGCATGGAGAGTGAGAGCTAGTA
*
78957022 TAAGA-CATGTCTGGGACAT-GCATCAG-CTACGA-GATG-T-GTCAGTGTAAGACCATGTTTGG
1 TAAGACCATGTCTGGGACATGGCATCAGCCT-CGATGATGATAGTCAGTGTAAGACCATGTATGG
* *
78957081 GACATGGCATCGGCATGGATATGTGAGAGCTAGTG
65 GACATGGCATCGGCATGGAGA-GTGAGAGCTAGTA
* * ** * *
78957116 TAAGACCATGTCTGGGACATGGCATCGGCCTCTATTTTGATAGTCAGTGTAAGACCATGTCTGGA
1 TAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGTCAGTGTAAGACCATGTATGGG
78957181 ACATGGCATC
66 ACATGGCATC
78957191 AACTTGATGG
Statistics
Matches: 143, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
92 39 0.27
93 1 0.01
94 43 0.30
95 16 0.11
96 8 0.06
97 4 0.03
98 1 0.01
99 31 0.22
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (98 bp):
TAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATAGTCAGTGTAAGACCATGTATGGG
ACATGGCATCGGCATGGAGAGTGAGAGCTAGTA
Found at i:78959275 original size:29 final size:29
Alignment explanation
Indices: 78959213--78959315 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
78959203 GTGACAAGAT
* * *
78959213 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
78959242 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
78959271 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
78959300 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78959316 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:78973297 original size:5 final size:5
Alignment explanation
Indices: 78973268--78973307 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
78973258 TAAATTTAAC
* *
78973268 TCAAT TTAAT ACAAT TCACAT TCAAT TCAAT TCAAT TCAA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCAA
78973308 ATCCAAGGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (5 bp):
TCAAT
Found at i:78976957 original size:29 final size:29
Alignment explanation
Indices: 78976924--78977055 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
78976914 GTGACGAGAT
*
78976924 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
78976953 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
78976982 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
78977011 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
78977040 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78977056 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:78984731 original size:29 final size:29
Alignment explanation
Indices: 78984698--78984829 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
78984688 GTGACGAGAT
*
78984698 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
78984727 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
78984756 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
78984785 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
78984814 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78984830 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:78988805 original size:27 final size:27
Alignment explanation
Indices: 78988772--78988920 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 27
78988762 CACACTAAAA
*
78988772 AGATGGAAGCTTTTTTGGTGATCTAAG
1 AGATGGAAGCCTTTTTGGTGATCTAAG
*
78988799 AGATGGAAGCCTTTATGGTGATCTAAG
1 AGATGGAAGCCTTTTTGGTGATCTAAG
* ** * * *
78988826 AGATGAAAGCCTAGTCGG-CAACTTAAG
1 AGATGGAAGCCTTTTTGGTGATC-TAAG
* **
78988853 AGATGGAAGCCTTTGTGGCAATCTAAG
1 AGATGGAAGCCTTTTTGGTGATCTAAG
* *
78988880 AGATGGAAGCCTTTCTGGCTG-TCTATG
1 AGATGGAAGCCTTTTTGG-TGATCTAAG
* *
78988907 AAAAGGAAGCCTTT
1 AGATGGAAGCCTTT
78988921 GTGGCAATTT
Statistics
Matches: 97, Mismatches: 22, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
26 2 0.02
27 93 0.96
28 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (27 bp):
AGATGGAAGCCTTTTTGGTGATCTAAG
Found at i:78988917 original size:81 final size:81
Alignment explanation
Indices: 78988772--78988950 Score: 202
Period size: 81 Copynumber: 2.2 Consensus size: 81
78988762 CACACTAAAA
* * ** * *
78988772 AGATGGAAGCTTTTTTGGTGATCTAAGAGATGGAAGCCTTTATGGTGATCTAAGAGATGAAAGCC
1 AGATGGAAGCCTTTGTGGCAATCTAAGAGATGGAAGCCTTTATGGTGATCTAAGAAAAGAAAGCC
78988837 -TAGTCGGCAACTTAAG
66 TTAGT-GGCAACTTAAG
* * *
78988853 AGATGGAAGCCTTTGTGGCAATCTAAGAGATGGAAGCCTTTCTGGCTG-TCTATGAAAAGGAAGC
1 AGATGGAAGCCTTTGTGGCAATCTAAGAGATGGAAGCCTTTATGG-TGATCTAAGAAAAGAAAGC
* * *
78988917 CTTTGTGGCAATTTATG
65 CTTAGTGGCAACTTAAG
*
78988934 A-ATGGATGCCTTTGTGG
1 AGATGGAAGCCTTTGTGG
78988951 GGCACTCTAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 15 0.18
81 63 0.76
82 5 0.06
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (81 bp):
AGATGGAAGCCTTTGTGGCAATCTAAGAGATGGAAGCCTTTATGGTGATCTAAGAAAAGAAAGCC
TTAGTGGCAACTTAAG
Found at i:78988925 original size:27 final size:27
Alignment explanation
Indices: 78988857--78988950 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
78988847 CTTAAGAGAT
* *
78988857 GGAAGCCTTTGTGGCAATCTAAGAGAT
1 GGAAGCCTTTGTGGCAATCTAAGAAAA
* ** *
78988884 GGAAGCCTTTCTGGCTGTCTATGAAAA
1 GGAAGCCTTTGTGGCAATCTAAGAAAA
* * *
78988911 GGAAGCCTTTGTGGCAATTTATG-AAT
1 GGAAGCCTTTGTGGCAATCTAAGAAAA
*
78988937 GGATGCCTTTGTGG
1 GGAAGCCTTTGTGG
78988951 GGCACTCTAA
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
26 15 0.27
27 40 0.73
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (27 bp):
GGAAGCCTTTGTGGCAATCTAAGAAAA
Found at i:78993680 original size:123 final size:123
Alignment explanation
Indices: 78993461--78993799 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
78993451 GAATTATGTG
*
78993461 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
78993526 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
78993584 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
78993649 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
78993707 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
78993772 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
78993800 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:78993823 original size:40 final size:40
Alignment explanation
Indices: 78993768--78994011 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
78993758 TGAATGATAC
* * * * **
78993768 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
78993808 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
78993848 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
78993888 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
78993928 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
78993968 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
78994008 CCGG
1 CCGG
78994012 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:79000222 original size:56 final size:56
Alignment explanation
Indices: 79000135--79000302 Score: 239
Period size: 56 Copynumber: 3.0 Consensus size: 56
79000125 TCTTACATGT
* * * * * *
79000135 AATCACATATCGATGCCAATGCACTAGATGTGGTCTTACTCACACACATATATCGG
1 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCGA
*
79000191 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATTTATCGA
1 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCGA
* *
79000247 AATCACATATCGATGCCAAC-ATATTAAATGTGGTCTTACTTGTACACATATATCGA
1 AATCACATATCGATGCCAACGA-ATTAAATGTGGTCTTACTCGCACACATATATCGA
79000303 TACCATGGTC
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 1 0.01
56 100 0.99
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCGA
Found at i:79001267 original size:21 final size:21
Alignment explanation
Indices: 79001242--79001284 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
79001232 ATCATTTTAC
* * *
79001242 ATATATAACCTTTATGAAATA
1 ATATAAAACCATTATAAAATA
79001263 ATATAAAACCATTATAAAATA
1 ATATAAAACCATTATAAAATA
79001284 A
1 A
79001285 GGTCACAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (21 bp):
ATATAAAACCATTATAAAATA
Found at i:79004457 original size:33 final size:33
Alignment explanation
Indices: 79004382--79004458 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 33
79004372 TTTACTTGCA
* *
79004382 TACTG-TACTGAAATGGGCTAAGGCCCTGACTG
1 TACTGTTATTGAAATAGGCTAAGGCCCTGACTG
*
79004414 TCACTATTATTGAAATAGGCTAA-G-CCTAGACTG
1 T-ACTGTTATTGAAATAGGCTAAGGCCCT-GACTG
79004447 CTACTGTTATTG
1 -TACTGTTATTG
79004459 GGAAAGGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
32 4 0.11
33 18 0.49
34 15 0.41
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (33 bp):
TACTGTTATTGAAATAGGCTAAGGCCCTGACTG
Found at i:79014085 original size:25 final size:25
Alignment explanation
Indices: 79014057--79014104 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79014047 TTATACCATG
* * *
79014057 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79014082 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79014105 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79014173 original size:20 final size:20
Alignment explanation
Indices: 79014148--79014211 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
79014138 TAAATATGGT
79014148 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
79014168 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
79014188 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
79014208 ATGT
1 ATGT
79014212 TCATAAATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:79014188 original size:11 final size:11
Alignment explanation
Indices: 79014152--79014206 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79014142 TATGGTATGT
79014152 ATGATATGCAC
1 ATGATATGCAC
* *
79014163 ATGACATG--T
1 ATGATATGCAC
79014172 ATGATATGCAC
1 ATGATATGCAC
*
79014183 ATGATATG--T
1 ATGATATGCAC
79014192 ATGATATGCAC
1 ATGATATGCAC
79014203 ATGA
1 ATGA
79014207 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79014288 original size:23 final size:23
Alignment explanation
Indices: 79014258--79014399 Score: 223
Period size: 23 Copynumber: 6.1 Consensus size: 23
79014248 AGGAAGTGCA
79014258 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79014281 AAAGGGCTTATGCCCCAGTTA-T
1 AAAGGGCTTATGCCCCAGTTATT
*
79014303 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
79014327 AAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATT
79014350 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
79014373 GAAAGGGCTTTTACCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
79014397 AAA
1 AAA
79014400 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
22 22 0.20
23 47 0.42
24 43 0.38
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79014335 original size:24 final size:23
Alignment explanation
Indices: 79014257--79014421 Score: 226
Period size: 24 Copynumber: 7.0 Consensus size: 23
79014247 GAGGAAGTGC
79014257 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79014280 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
79014303 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
79014325 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
79014349 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* * *
79014373 GAAAGGGCTTTTACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
79014397 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79014421 A
1 A
79014422 TGATAAGCAG
Statistics
Matches: 129, Mismatches: 8, Indels: 9
0.88 0.05 0.06
Matches are distributed among these distances:
22 22 0.17
23 44 0.34
24 53 0.41
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:79014367 original size:69 final size:71
Alignment explanation
Indices: 79014256--79014421 Score: 248
Period size: 69 Copynumber: 2.4 Consensus size: 71
79014246 GGAGGAAGTG
* *
79014256 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA-T-AAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTATACCCC
79014319 AGTTAT
66 AGTTAT
*
79014325 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTACCCC
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTATACCCC
79014390 AGTTAT
66 AGTTAT
* *
79014396 TAAAAGAGGC-TAGGCCTCCAGTTATA
1 CAAAAG-GGCTTATGCC-CCAGTTATA
79014422 TGATAAGCAG
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
69 45 0.51
70 1 0.01
71 30 0.34
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTATACCCC
AGTTAT
Found at i:79014646 original size:31 final size:31
Alignment explanation
Indices: 79014611--79014674 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
79014601 CGTTTACAGT
79014611 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
79014642 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79014673 AA
1 AA
79014675 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79021018 original size:20 final size:20
Alignment explanation
Indices: 79020939--79021023 Score: 136
Period size: 20 Copynumber: 4.2 Consensus size: 20
79020929 ATAAATATGG
79020939 TATGTATGATATGCACATG-
1 TATGTATGATATGCACATGA
79020958 TCATGTATGATATGCACATGA
1 T-ATGTATGATATGCACATGA
*
79020979 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
79020999 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
79021019 GATGT
1 TATGT
79021024 TCATAAATGC
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
19 1 0.02
20 60 0.98
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:79021100 original size:23 final size:23
Alignment explanation
Indices: 79021070--79021212 Score: 241
Period size: 23 Copynumber: 6.1 Consensus size: 23
79021060 AGGAAGTGCA
79021070 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79021093 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79021116 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
79021140 AAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATT
79021163 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79021186 GAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
79021210 AAA
1 AAA
79021213 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
23 71 0.62
24 44 0.38
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79021148 original size:24 final size:23
Alignment explanation
Indices: 79021069--79021234 Score: 235
Period size: 23 Copynumber: 7.0 Consensus size: 23
79021059 GAGGAAGTGC
79021069 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79021092 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
79021115 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
79021138 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
79021162 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
79021186 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
79021210 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79021234 A
1 A
79021235 TGATAAAGCA
Statistics
Matches: 132, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 67 0.51
24 55 0.42
25 10 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:79021161 original size:47 final size:46
Alignment explanation
Indices: 79021070--79021234 Score: 233
Period size: 47 Copynumber: 3.5 Consensus size: 46
79021060 AGGAAGTGCA
*
79021070 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
*
79021116 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* *
79021163 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
79021210 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
79021235 TGATAAAGCA
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
46 22 0.21
47 64 0.60
48 11 0.10
49 10 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:79021460 original size:31 final size:31
Alignment explanation
Indices: 79021425--79021488 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
79021415 CGTTTACAGT
79021425 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
79021456 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79021487 AA
1 AA
79021489 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Done.