Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 266 of 345
Found at i:79027881 original size:16 final size:17
Alignment explanation
Indices: 79027849--79027881 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79027839 AAATAAGAAG
79027849 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
79027867 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
79027882 CTTCATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:79028946 original size:25 final size:25
Alignment explanation
Indices: 79028918--79028967 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
79028908 GTTGCTTAAG
*
79028918 GACTATGATTTCATGATAAAGTATC
1 GACTATGATTGCATGATAAAGTATC
79028943 GACTATGATTGCATGATAAAGTATC
1 GACTATGATTGCATGATAAAGTATC
79028968 ATCCTAGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (25 bp):
GACTATGATTGCATGATAAAGTATC
Found at i:79030991 original size:27 final size:27
Alignment explanation
Indices: 79030934--79031040 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 27
79030924 CACTACAAAG
* **
79030934 GTATTTCAATAATTTTACAAA-CCGGA
1 GTATTTCAGTAATTTTACAAATTGGGA
*
79030960 GGTATTTCAGTAATTTTACAAGTTGGGA
1 -GTATTTCAGTAATTTTACAAATTGGGA
* * * *
79030988 GTATTTCGGTAATTTCAAAAATTGACG-
1 GTATTTCAGTAATTTTACAAATTG-GGA
*
79031015 GTATTTTAGTAATTTTACAAATTGGG
1 GTATTTCAGTAATTTTACAAATTGGG
79031041 GGTCTTAACG
Statistics
Matches: 64, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.02
27 59 0.92
28 4 0.06
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATTGGGA
Found at i:79030992 original size:54 final size:54
Alignment explanation
Indices: 79030934--79031040 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
79030924 CACTACAAAG
* * *
79030934 GTATTTCAATAATTTTACAAACCGGA-GGTATTTCAGTAATTTTACAAGTTGGGA
1 GTATTTCAATAATTTCA-AAAACGGACGGTATTTCAGTAATTTTACAAATTGGGA
** ** *
79030988 GTATTTCGGTAATTTCAAAAATTGACGGTATTTTAGTAATTTTACAAATTGGG
1 GTATTTCAATAATTTCAAAAACGGACGGTATTTCAGTAATTTTACAAATTGGG
79031041 GGTCTTAACG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 5 0.11
54 39 0.89
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
GTATTTCAATAATTTCAAAAACGGACGGTATTTCAGTAATTTTACAAATTGGGA
Found at i:79038106 original size:29 final size:29
Alignment explanation
Indices: 79038074--79038203 Score: 215
Period size: 29 Copynumber: 4.5 Consensus size: 29
79038064 TTCGAGCTCA
*
79038074 CACATTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
* *
79038103 CACACTCAGTGCCATATTTTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
79038132 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
* *
79038161 CACACTCAGTGCCATATTTTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
79038190 CACACTTAGTGCCA
1 CACACTTAGTGCCA
79038204 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (29 bp):
CACACTTAGTGCCATATATTTCCAGCATG
Found at i:79038106 original size:58 final size:58
Alignment explanation
Indices: 79038044--79038203 Score: 216
Period size: 58 Copynumber: 2.8 Consensus size: 58
79038034 ATTTAAGCCC
* *
79038044 GCACACACAGTGCCATACCCTTCGAGC-T-CACACATTTAGTGCCATATATTTCCAGCAT
1 GCACACTCAGTGCCATACCCTTCCAGCATGCACAC--TTAGTGCCATATATTTCCAGCAT
***
79038102 GCACACTCAGTGCCATATTTTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
***
79038160 GCACACTCAGTGCCATATTTTTCCAGCATGCACACTTAGTGCCA
1 GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCA
79038204 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
58 89 0.94
59 1 0.01
60 5 0.05
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.28
Consensus pattern (58 bp):
GCACACTCAGTGCCATACCCTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
Found at i:79040637 original size:27 final size:27
Alignment explanation
Indices: 79040596--79040763 Score: 162
Period size: 27 Copynumber: 6.2 Consensus size: 27
79040586 AGGAAGCGTC
*
79040596 CTGGTGGCTATGCCACATTTATCTGCT
1 CTGGTGGCTATGCCACATTTATCTGAT
* * * *
79040623 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACATTTATCTGAT
*
79040650 CTGGTGGCTATGCCACGA-TTATCTAAT
1 CTGGTGGCTATGCCAC-ATTTATCTGAT
* *
79040677 CTAGTGGCTATGCCACGA-TTATCTAAT
1 CTGGTGGCTATGCCAC-ATTTATCTGAT
* * * *
79040704 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCACATTTATCTGAT
* *
79040731 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTATGCCACATTTATCTG-AT
79040758 CTGGTG
1 CTGGTG
79040764 ACTTCGTCAC
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
26 7 0.06
27 112 0.93
28 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATTTATCTGAT
Found at i:79040680 original size:54 final size:53
Alignment explanation
Indices: 79040596--79040763 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 53
79040586 AGGAAGCGTC
*
79040596 CTGGTGGCTATGCCACATTTATCTGCTCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACA-TTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
* * **
79040650 CTGGTGGCTATGCCACGATTATCTAATCTAGTGGCTATGCCACGAT-TATCTAAT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTAGTGGCTCTGCCAC-ATATATCTGTT
* * * *
79040704 CTGGTGGCTCTGCCACATATATTTGTTCTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTATGCCACAT-TATCTGATCTAGTGGCTCTGCCACATATATCTGT-T
79040758 CTGGTG
1 CTGGTG
79040764 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
53 8 0.08
54 85 0.89
55 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
Found at i:79044712 original size:47 final size:46
Alignment explanation
Indices: 79044598--79044746 Score: 172
Period size: 47 Copynumber: 3.2 Consensus size: 46
79044588 GCACATAGTT
* * ** * * *
79044598 ACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACACGGATC
1 ACATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGAAGC
* *
79044646 ACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTAGC
1 ACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAGC
*
79044693 ACATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAGC
1 ACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GAAGC
79044740 ACATATC
1 ACATATC
79044747 TCATTTCTCC
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 26 0.30
47 53 0.60
48 9 0.10
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (46 bp):
ACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAGC
Found at i:79047346 original size:30 final size:30
Alignment explanation
Indices: 79047294--79047390 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
79047284 TTATGGAGCA
79047294 AAGATAAGAAGAAAACC-GAATAAAGAAATCC
1 AAGAT-AG-AGAAAACCAGAATAAAGAAATCC
*
79047325 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAGAGAAAACCAGAATAAAGAAATCC
* * * * * *
79047355 -AGAATAAAGAGATCTAGGATAAAGAAACCC
1 AAG-ATAGAGAAAACCAGAATAAAGAAATCC
79047385 AAGATA
1 AAGATA
79047391 CGATACTATG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
29 9 0.16
30 40 0.71
31 7 0.12
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (30 bp):
AAGATAGAGAAAACCAGAATAAAGAAATCC
Found at i:79047350 original size:15 final size:15
Alignment explanation
Indices: 79047302--79047381 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
79047292 CAAAGATAAG
*
79047302 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
79047316 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
79047331 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79047346 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
79047361 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
79047376 AAGAAA
1 AAGAAA
79047382 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79047390 original size:15 final size:15
Alignment explanation
Indices: 79047313--79047390 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79047303 AGAAAACCGA
79047313 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
79047328 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
79047342 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
79047357 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
79047373 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79047388 ATA
1 ATA
79047391 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 4 0.08
15 43 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79051113 original size:52 final size:49
Alignment explanation
Indices: 79050930--79051134 Score: 197
Period size: 47 Copynumber: 4.2 Consensus size: 49
79050920 TGCACATAGT
* ** * *
79050930 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * *
79050978 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
79051025 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * * *
79051072 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGAAAT
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
*
79051124 CACATTTCACA
1 CACATATCACA
79051135 TGCTGCCATG
Statistics
Matches: 131, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
46 25 0.19
47 54 0.41
48 11 0.08
49 1 0.01
52 40 0.31
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:79051135 original size:52 final size:52
Alignment explanation
Indices: 79050994--79051135 Score: 152
Period size: 52 Copynumber: 2.8 Consensus size: 52
79050984 TCACACTGAT
* * *
79050994 GCCATATCCCAGATATGGTCTTATAC-AGTAGCACATATCACA-----CCGAT
1 GCCATAGCCCAGATATGGTCTTATACGA-AAGCACATATCACATTTCTCCGAA
* * *
79051041 GCCATATCCCGGATATGGTCTTATACGGAAGCACATATCACATTTCTCCGAA
1 GCCATAGCCCAGATATGGTCTTATACGAAAGCACATATCACATTTCTCCGAA
* * *
79051093 GCCATAGCCCAGCTATGGTCTTATACGAAATCACATTTCACAT
1 GCCATAGCCCAGATATGGTCTTATACGAAAGCACATATCACAT
79051136 GCTGCCATGG
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
47 38 0.48
52 41 0.52
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (52 bp):
GCCATAGCCCAGATATGGTCTTATACGAAAGCACATATCACATTTCTCCGAA
Found at i:79058485 original size:42 final size:42
Alignment explanation
Indices: 79058426--79058588 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 42
79058416 TCGGCATCAG
* **
79058426 TATGAG-TTATCATGTAAGACCATATCTGGGATATGGCGTTTA
1 TATGAGATT-TCATGTAAGACCATATCTGGGACATGGCGTCGA
*
79058468 TATGAGATTTCATGTAAGACCATGTCTGGGACATGGCGTCGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTCGA
* * * *
79058510 AATGAGAATT--TGTATAGGACCATATCTGGGATATGGCATCGA
1 TATGAGATTTCATGTA-A-GACCATATCTGGGACATGGCGTCGA
* ** **
79058552 TGTGAGATCCCATGTAAGACCACGTCTGGGACATGGC
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGC
79058589 ATTGGAATCT
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 4 0.04
41 1 0.01
42 87 0.88
43 3 0.03
44 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTCGA
Found at i:79065678 original size:42 final size:42
Alignment explanation
Indices: 79065597--79065723 Score: 157
Period size: 43 Copynumber: 3.0 Consensus size: 42
79065587 ACCTAGACGT
* * * *
79065597 GGTCTTACATGTAATCAAATATTGATGCCACTATCCCAGACAG
1 GGTCTTACAGGAAATCAAATA-TGATGCCAATGTCCCAGACAG
*
79065640 GGTCTTACAGGAAATCAAATATGATGCCAATGTCCCAGACAT
1 GGTCTTACAGGAAATCAAATATGATGCCAATGTCCCAGACAG
*
79065682 GGTCTTACAAGTAAATCATAAGT-TGATGCCAATGTCCCAGAC
1 GGTCTTAC-AGGAAATCA-AA-TATGATGCCAATGTCCCAGAC
79065724 GTGGCCTTAC
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
42 26 0.35
43 27 0.36
44 21 0.28
45 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACAGGAAATCAAATATGATGCCAATGTCCCAGACAG
Found at i:79065722 original size:44 final size:42
Alignment explanation
Indices: 79065591--79065734 Score: 157
Period size: 44 Copynumber: 3.4 Consensus size: 42
79065581 CCAACGACCT
* * * *
79065591 AGACGTGGTCTTACATGT-AATCAAATATTGATGCCACTATCCC
1 AGACATGGTCTTACAAGTAAATC-AA-ATTGATGCCAATGTCCC
* *
79065634 AGACAGGGTCTTAC-AGGAAATCAAATATGATGCCAATGTCCC
1 AGACATGGTCTTACAAGTAAATCAAAT-TGATGCCAATGTCCC
79065676 AGACATGGTCTTACAAGTAAATCATAAGTTGATGCCAATGTCCC
1 AGACATGGTCTTACAAGTAAATCA-AA-TTGATGCCAATGTCCC
* *
79065720 AGACGTGGCCTTACA
1 AGACATGGTCTTACA
79065735 TGATAACACA
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.34
43 24 0.28
44 30 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
AGACATGGTCTTACAAGTAAATCAAATTGATGCCAATGTCCC
Found at i:79070162 original size:27 final size:27
Alignment explanation
Indices: 79070105--79070164 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
79070095 GCAAATCAAT
*
79070105 CATTTTACCTTACAGGGGTATTACAGT
1 CATTTTACCTTACAGGGGTATTACAGC
* * *
79070132 CATTTTACCTTATAGGGGTATTTCGGC
1 CATTTTACCTTACAGGGGTATTACAGC
79070159 CATTTT
1 CATTTT
79070165 CCCCTATGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
CATTTTACCTTACAGGGGTATTACAGC
Found at i:79070203 original size:27 final size:27
Alignment explanation
Indices: 79070173--79070258 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
79070163 TTCCCCTATG
79070173 AGGGTAAAATCGTCATTTTATCACTTA
1 AGGGTAAAATCGTCATTTTATCACTTA
79070200 AGGG-AAATATCGTCATTTTATCACTTA
1 AGGGTAAA-ATCGTCATTTTATCACTTA
* * *
79070227 AGGGCAATATCGTCATTTTATCACATA
1 AGGGTAAAATCGTCATTTTATCACTTA
79070254 AGGGT
1 AGGGT
79070259 TTAGGTACAC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
26 3 0.06
27 49 0.91
28 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (27 bp):
AGGGTAAAATCGTCATTTTATCACTTA
Found at i:79075313 original size:15 final size:16
Alignment explanation
Indices: 79075293--79075322 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79075283 GAGCCTGGTT
79075293 GAACTC-ATTTCCACC
1 GAACTCAATTTCCACC
79075308 GAACTCAATTTCCAC
1 GAACTCAATTTCCAC
79075323 ATGGCAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (16 bp):
GAACTCAATTTCCACC
Found at i:79081362 original size:26 final size:24
Alignment explanation
Indices: 79081305--79081368 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 24
79081295 TTTTCTCCTA
* *
79081305 AATTTTTAATTTTATTTAATTATTT
1 AATTTTTAA-TTTATTGAATCATTT
79081330 AACTTTTTAATTTATTGAATCATTAAT
1 AA-TTTTTAATTTATTGAATCATT--T
79081357 AATTTTT-ATTTA
1 AATTTTTAATTTA
79081369 ATTAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 19 0.56
26 12 0.35
27 3 0.09
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (24 bp):
AATTTTTAATTTATTGAATCATTT
Found at i:79084636 original size:40 final size:39
Alignment explanation
Indices: 79084553--79084737 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
79084543 TCGAATGATG
* *
79084553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
79084593 TCCGGACTAGGATCCGAAGGCATTTGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
*
79084633 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
79084672 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
**
79084713 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
79084738 AGCGAGTCGT
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:79084693 original size:79 final size:82
Alignment explanation
Indices: 79084553--79084737 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
79084543 TCGAATGATG
* * *
79084553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
* *
79084617 TGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
79084633 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
79084695 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
79084713 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79084738 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:79084768 original size:79 final size:79
Alignment explanation
Indices: 79084553--79084770 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 79
79084543 TCGAATGATG
* * * * ** *
79084553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
* *
79084616 TTGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
79084633 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
79084698 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
79084713 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
79084771 TACGTGATTC
Statistics
Matches: 112, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
79 68 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:79098058 original size:124 final size:124
Alignment explanation
Indices: 79097836--79098060 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
79097826 GAATTATGTG
* * * * * * *
79097836 AAATGAAATATGGATGTGTATTGATTATTGATTTATGCGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGCGTGCATGAGCAATTGAATGATACCCGG
* **
79097901 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
* *
79097960 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGCGTGCATGAGCAATTGAATGATACCCGG
*
79098025 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
79098061 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGCGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:79098182 original size:40 final size:40
Alignment explanation
Indices: 79098055--79098184 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
79098045 TTGCTGGAAA
* * * *
79098055 TTATATCCGGGTTAAGACTCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
79098095 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
79098135 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
79098175 TTATATCCGG
1 TTATATCCGG
79098185 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:79099634 original size:49 final size:49
Alignment explanation
Indices: 79099566--79099957 Score: 612
Period size: 49 Copynumber: 8.3 Consensus size: 49
79099556 GGTGTTACAC
* * *
79099566 TATCACATATAT--ACACTTTCACATTCATCACGTTGGCCATTCGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
** *
79099613 TATCACATATATATGCACTTTCACATTCTTCACATCGGCCATTAGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099662 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
79099711 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTTGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099760 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099809 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
79099858 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGG---
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099904 ---C-C-T-TAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099945 TATCACATATATA
1 TATCACATATATA
79099958 TATCTCATAC
Statistics
Matches: 320, Mismatches: 13, Indels: 23
0.90 0.04 0.06
Matches are distributed among these distances:
38 31 0.10
40 3 0.01
41 1 0.00
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
46 1 0.00
47 15 0.05
49 265 0.83
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:79099912 original size:38 final size:38
Alignment explanation
Indices: 79099869--79099947 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
79099859 ATCACATATA
*
79099869 TATACACTTTCACATTCATCACATCGGCCATTTGGCCT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099907 TATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCT
79099945 TAT
1 TAT
79099948 CACATATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.34
Consensus pattern (38 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:79108797 original size:55 final size:55
Alignment explanation
Indices: 79108711--79108877 Score: 228
Period size: 55 Copynumber: 3.0 Consensus size: 55
79108701 TCTTACATGT
* * * * *
79108711 AATCACATATCGATGCCAATGCACTAGATGTGGTCTTACTCACACACATATATCG
1 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCG
*
79108766 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATTTATCG
1 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCG
* * *
79108821 AAATCACATATCGATGCCAAC-ATATTAAACGTGGTCTTACTTGTACACATATATCG
1 -AATCACATATCGATGCCAACGA-ATTAAATGTGGTCTTACTCGCACACATATATCG
79108877 A
1 A
79108878 TACCATGGTC
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
55 51 0.51
56 49 0.49
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (55 bp):
AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATATATCG
Found at i:79108855 original size:56 final size:55
Alignment explanation
Indices: 79108711--79108877 Score: 221
Period size: 56 Copynumber: 3.0 Consensus size: 55
79108701 TCTTACATGT
* * *
79108711 AATCACATATCGATGCCAATGC-ACTAGATGTGGTCTTACTCACACACATATATCG-
1 AATCACATATCGATGCCAA--CAATTAAATGTGGTCTTACTCGCACACATATATCGA
*
79108766 AATCACATATCGATGCCAACGAATTAAATGTGGTCTTACTCGCACACATTTATCGA
1 AATCACATATCGATGCCAAC-AATTAAATGTGGTCTTACTCGCACACATATATCGA
* * *
79108822 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTTGTACACATATATCGA
1 AATCACATATCGATGCCAACA-ATTAAATGTGGTCTTACTCGCACACATATATCGA
79108878 TACCATGGTC
Statistics
Matches: 100, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
53 1 0.01
55 49 0.49
56 50 0.50
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (55 bp):
AATCACATATCGATGCCAACAATTAAATGTGGTCTTACTCGCACACATATATCGA
Found at i:79110726 original size:31 final size:31
Alignment explanation
Indices: 79110682--79110741 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
79110672 CCTTTTCATA
*
79110682 TTTCATATCTCATAACACTGGGCCGAAGCCT
1 TTTCAAATCTCATAACACTGGGCCGAAGCCT
* **
79110713 TTTCAAATTTCATATTACTGGGCCGAAGC
1 TTTCAAATCTCATAACACTGGGCCGAAGC
79110742 TTTACTGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (31 bp):
TTTCAAATCTCATAACACTGGGCCGAAGCCT
Found at i:79111040 original size:24 final size:24
Alignment explanation
Indices: 79110936--79111100 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
79110926 GCTTTATCAT
* *
79110936 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
79110961 ATAACTGGGGCAAAAG-CCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
*
79110983 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
79111006 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79111030 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79111054 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79111078 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
79111101 TCACTTCCTC
Statistics
Matches: 130, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
22 18 0.14
23 25 0.19
24 77 0.59
25 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:79111175 original size:20 final size:20
Alignment explanation
Indices: 79111150--79111210 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
79111140 TTATGATTAC
79111150 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79111170 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
79111190 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
79111210 A
1 A
79111211 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79111281 original size:25 final size:25
Alignment explanation
Indices: 79111253--79111300 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79111243 ATACATAAAC
* * *
79111253 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79111278 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79111301 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79112868 original size:27 final size:27
Alignment explanation
Indices: 79112539--79112857 Score: 390
Period size: 27 Copynumber: 11.8 Consensus size: 27
79112529 GGGTATTTTA
* * *
79112539 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
79112566 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
**
79112593 GTAATTCTATAAATCGAGGGTAAAATT
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
79112620 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
79112647 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
79112674 ATAATTATGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
79112701 ATAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
79112728 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
79112755 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
79112782 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
79112809 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
79112836 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
79112858 CTTTGGTAAT
Statistics
Matches: 260, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 256 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:79112879 original size:27 final size:27
Alignment explanation
Indices: 79112781--79113059 Score: 213
Period size: 27 Copynumber: 10.3 Consensus size: 27
79112771 AGGGTAAAAC
* * ****
79112781 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
79112808 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
79112835 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
79112862 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
79112889 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
79112916 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
79112943 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
79112970 GATAATTTTACAAAACTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * * *
79112998 GATAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
79113025 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
79113051 GGTAATTTT
1 GGTAATTTT
79113060 GTAAACCAAA
Statistics
Matches: 216, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.09
27 169 0.78
28 28 0.13
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:79113020 original size:55 final size:55
Alignment explanation
Indices: 79112906--79113068 Score: 208
Period size: 55 Copynumber: 3.0 Consensus size: 55
79112896 TTACAGGTCG
* * * * *
79112906 AGGGTATTTCAGTAATTTCAC-AAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
79112960 GGGGTATTTT-GATAATTTTACAAAACTAGGGGTATTTTGATAATTTTATAAACCA
1 AGGGTATTTTAG-TAATTTTACAAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
79113015 AGGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAAACTAGGGGTATTTTGGTAATTTTATAAACCA
79113068 A
1 A
79113069 AGTATTTAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 26 0.27
54 17 0.18
55 51 0.54
56 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (55 bp):
AGGGTATTTTAGTAATTTTACAAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:79113073 original size:26 final size:26
Alignment explanation
Indices: 79112935--79113075 Score: 120
Period size: 27 Copynumber: 5.3 Consensus size: 26
79112925 ACAAATTAGG
* * *
79112935 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
79112962 GGTATTTTGATAATTTTACAAAACTAGG
1 GGTATTTTGGTAATTTTA-TAAACCA-A
*
79112990 GGTATTTTGATAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
79113016 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
79113043 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
79113069 AGTATTT
1 GGTATTT
79113076 AAATAGGATA
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 27 0.28
27 43 0.45
28 26 0.27
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:79115857 original size:42 final size:42
Alignment explanation
Indices: 79115803--79115918 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 42
79115793 GCATCAGTAT
* ** *
79115803 GATTATCATGTAAGAGCATATCTGGGATATGGCGTTTATATGA
1 GATT-TCATGTAAGACCATATCTGGGATATGGCGTCGAAATGA
* *
79115846 GATTTCATGTAAGACCATGTCTGGGACATGGCGTCGAAATGA
1 GATTTCATGTAAGACCATATCTGGGATATGGCGTCGAAATGA
*
79115888 GAATT--TGTATAGGACCATATCTGGGATATGG
1 GATTTCATGTA-A-GACCATATCTGGGATATGG
79115919 AATTGATGTG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
40 4 0.06
41 1 0.02
42 53 0.85
43 4 0.06
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTGGGATATGGCGTCGAAATGA
Found at i:79118054 original size:27 final size:27
Alignment explanation
Indices: 79118024--79118077 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79118014 TCATACAACC
* *
79118024 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
79118051 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
79118078 TCACATAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:79120017 original size:40 final size:40
Alignment explanation
Indices: 79119951--79120117 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79119941 AAATTGAATG
* * *
79119951 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79119990 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
79120030 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79120070 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79120110 ATATCCGG
1 ATATCCGG
79120118 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79128004 original size:40 final size:40
Alignment explanation
Indices: 79127951--79128077 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
79127941 GAAATTATTC
* * *
79127951 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACTA
* * *
79127991 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACTA
* *
79128031 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACTA
79128071 TATCCGG
1 TATCCGG
79128078 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 69 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACTA
Found at i:79134168 original size:43 final size:42
Alignment explanation
Indices: 79134102--79134238 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 42
79134092 AGCTCATACA
* * * **
79134102 ATGCCAACAACCTAGAC-GTGGTCTTACATGTCATCAAATATCG
1 ATGCCAATATCCTAGACAG-GGTCTTACAGGAAATCAAATAT-G
*
79134145 ATGCCACTATCCTAGACAGGGTCTTACAGGAAATCAAATATG
1 ATGCCAATATCCTAGACAGGGTCTTACAGGAAATCAAATATG
* * * *
79134187 ATGCCAATGTCCCAGACATGGTCTTACAAGTAAATCATAAGT-TG
1 ATGCCAATATCCTAGACAGGGTCTTAC-AGGAAATCA-AA-TATG
79134231 ATGCCAAT
1 ATGCCAAT
79134239 GTCCCAGATG
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
42 24 0.30
43 41 0.52
44 13 0.16
45 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATATCCTAGACAGGGTCTTACAGGAAATCAAATATG
Found at i:79134204 original size:42 final size:43
Alignment explanation
Indices: 79134134--79134246 Score: 140
Period size: 42 Copynumber: 2.6 Consensus size: 43
79134124 CTTACATGTC
* * *
79134134 ATCAAATATCGATGCCACTATCCTAGACAGGGTCTTAC-AGGAA
1 ATCAAATAT-GATGCCAATGTCCCAGACAGGGTCTTACAAGGAA
* *
79134177 ATCAAATATGATGCCAATGTCCCAGACATGGTCTTACAAGTAA
1 ATCAAATATGATGCCAATGTCCCAGACAGGGTCTTACAAGGAA
79134220 ATCATAAGT-TGATGCCAATGTCCCAGA
1 ATCA-AA-TATGATGCCAATGTCCCAGA
79134247 TGTGGCCTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 24 0.39
43 17 0.27
44 20 0.32
45 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (43 bp):
ATCAAATATGATGCCAATGTCCCAGACAGGGTCTTACAAGGAA
Found at i:79137841 original size:27 final size:27
Alignment explanation
Indices: 79137811--79137866 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
79137801 TTTCCACAAC
79137811 TTAATTTTTTTCTTAAAATGATAGGCT
1 TTAATTTTTTTCTTAAAATGATAGGCT
79137838 TTAATTTTTTTCTTAAAATGATAGGCT
1 TTAATTTTTTTCTTAAAATGATAGGCT
79137865 TT
1 TT
79137867 CATAAATCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (27 bp):
TTAATTTTTTTCTTAAAATGATAGGCT
Found at i:79138681 original size:27 final size:27
Alignment explanation
Indices: 79138624--79138695 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
79138614 GCAAATCAAT
*
79138624 CATTTTACCTTATAGGGGTATTATAGT
1 CATTTTACCTTATAGGGGTATTATAGC
*
79138651 CATTTTACCTTATAGGGGTATT-TCGGC
1 CATTTTACCTTATAGGGGTATTAT-AGC
*
79138678 CATTTTACCCTATGAGGG
1 CATTTTACCTTAT-AGGG
79138696 TAAAATCGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 35 0.88
28 4 0.10
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (27 bp):
CATTTTACCTTATAGGGGTATTATAGC
Found at i:79138722 original size:27 final size:27
Alignment explanation
Indices: 79138700--79138776 Score: 136
Period size: 27 Copynumber: 2.9 Consensus size: 27
79138690 TGAGGGTAAA
79138700 ATCGTCATTTTATCACTTAAGGGCAAT
1 ATCGTCATTTTATCACTTAAGGGCAAT
*
79138727 ATCGTTATTTTATCACTTAAGGGCAAT
1 ATCGTCATTTTATCACTTAAGGGCAAT
*
79138754 ATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACTTAAGGG
79138777 TTTAGGTACA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (27 bp):
ATCGTCATTTTATCACTTAAGGGCAAT
Found at i:79152797 original size:71 final size:71
Alignment explanation
Indices: 79152709--79152872 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
79152699 GAGATGTATC
79152709 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
79152774 AGGACA
66 AGGACA
*
79152780 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
79152845 CGGACA
66 AGGACA
79152851 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
79152873 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:79156662 original size:19 final size:18
Alignment explanation
Indices: 79156638--79156696 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 18
79156628 TGGTAAGACC
*
79156638 TAATTTTCTCCTAAATTTT
1 TAATTTTAT-CTAAATTTT
* *
79156657 TAATTTTATTTAATTTTT
1 TAATTTTATCTAAATTTT
*
79156675 TAATTTT-T-TAATTTTT
1 TAATTTTATCTAAATTTT
79156691 TAATTT
1 TAATTT
79156697 ATTGAATCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.38
17 1 0.03
18 14 0.38
19 8 0.22
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (18 bp):
TAATTTTATCTAAATTTT
Found at i:79156678 original size:8 final size:8
Alignment explanation
Indices: 79156653--79156696 Score: 70
Period size: 8 Copynumber: 5.2 Consensus size: 8
79156643 TTCTCCTAAA
79156653 TTTTTAATT
1 TTTTTAA-T
79156662 TTATTTAAT
1 TT-TTTAAT
79156671 TTTTTAAT
1 TTTTTAAT
79156679 TTTTTAAT
1 TTTTTAAT
79156687 TTTTTAAT
1 TTTTTAAT
79156695 TT
1 TT
79156697 ATTGAATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 24 0.71
9 5 0.15
10 5 0.15
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTAAT
Found at i:79156684 original size:16 final size:17
Alignment explanation
Indices: 79156653--79156699 Score: 78
Period size: 16 Copynumber: 2.8 Consensus size: 17
79156643 TTCTCCTAAA
79156653 TTTTTAATTTTATTTAAT
1 TTTTTAA-TTTATTTAAT
79156671 TTTTTAATTT-TTTAAT
1 TTTTTAATTTATTTAAT
79156687 TTTTTAATTTATT
1 TTTTTAATTTATT
79156700 GAATCATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.57
17 5 0.18
18 7 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTAATTTATTTAAT
Found at i:79173482 original size:40 final size:39
Alignment explanation
Indices: 79173355--79173521 Score: 140
Period size: 40 Copynumber: 4.2 Consensus size: 39
79173345 CGGAATATAA
* *
79173355 CCGGATATAATCACGT-GCACAAATGCCTTCGAGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * * * *
79173395 CCAGATAGAACGACTTGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
79173435 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * *
79173475 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
79173514 CCGGATAT
1 CCGGATAT
79173522 CATTCAATTT
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 16 0.16
40 87 0.84
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:79176268 original size:56 final size:56
Alignment explanation
Indices: 79176179--79176346 Score: 237
Period size: 56 Copynumber: 3.0 Consensus size: 56
79176169 TCTTACATGT
* * * * * * *
79176179 AATCACATATCGATGCCAATGCACTAGATGTGGTCTTACTCACACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
*
79176235 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATTTATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
* * *
79176291 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTTGTACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
79176347 TACCATGGTC
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 100 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
Found at i:79177300 original size:21 final size:21
Alignment explanation
Indices: 79177275--79177317 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
79177265 ATCATTTTAC
* * *
79177275 ATATATAACCTTTATGAAATA
1 ATATAAAACCATTATAAAATA
79177296 ATATAAAACCATTATAAAATA
1 ATATAAAACCATTATAAAATA
79177317 A
1 A
79177318 GGTCACAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (21 bp):
ATATAAAACCATTATAAAATA
Found at i:79180472 original size:34 final size:34
Alignment explanation
Indices: 79180429--79180510 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
79180419 CATACTGTAC
*
79180429 TGAAATGGGCTAAGGCCCTGACTG-TCACTATTAT
1 TGAAATGGGCTAAGGCCCAGACTGCT-ACTATTAT
*
79180463 TGAAATGGGCTAA-GCCCAGACTGCTACTGTTAT
1 TGAAATGGGCTAAGGCCCAGACTGCTACTATTAT
79180496 TGGGAAA-GGGCTAAG
1 T--GAAATGGGCTAAG
79180511 ACTCCTAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 17 0.40
34 21 0.50
35 4 0.10
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAGACTGCTACTATTAT
Found at i:79193862 original size:16 final size:17
Alignment explanation
Indices: 79193830--79193862 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79193820 AAATAAGAAG
79193830 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
79193848 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
79193863 CTTCATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:79196369 original size:124 final size:124
Alignment explanation
Indices: 79196147--79196371 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
79196137 GAATTATGTG
* * ** * * *
79196147 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
79196212 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
79196271 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
79196336 GCTAAGTCCCGAAGAC-AGTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
79196372 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:79196493 original size:40 final size:40
Alignment explanation
Indices: 79196366--79196495 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
79196356 ATGCTGGAAA
* * *
79196366 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
79196406 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
79196446 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
79196486 TTATATCCGG
1 TTATATCCGG
79196496 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:79198181 original size:25 final size:25
Alignment explanation
Indices: 79198153--79198201 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
79198143 GTTGCTTAAG
*
79198153 GACTATGATTTCACGATAAAGTATT
1 GACTATGATTGCACGATAAAGTATT
*
79198178 GACTATGATTGCATGATAAAGTAT
1 GACTATGATTGCACGATAAAGTAT
79198202 CATCCTAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (25 bp):
GACTATGATTGCACGATAAAGTATT
Found at i:79200226 original size:27 final size:27
Alignment explanation
Indices: 79200169--79200275 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
79200159 CACTACAAAG
* **
79200169 GTATTTCAATAATTTTACAAA-CCGGA
1 GTATTTCAGTAATTTTACAAATTGGGA
*
79200195 GGTATTTCAGTAATTTTACAAGTTGGGA
1 -GTATTTCAGTAATTTTACAAATTGGGA
* * * **
79200223 GTATTTCGGTAATTTCAAAAATTGACA
1 GTATTTCAGTAATTTTACAAATTGGGA
*
79200250 GTATTTTAGTAATTTTACAAATTGGG
1 GTATTTCAGTAATTTTACAAATTGGG
79200276 GGTCTTAACG
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
27 60 0.95
28 3 0.05
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATTGGGA
Found at i:79205400 original size:46 final size:46
Alignment explanation
Indices: 79205345--79205525 Score: 228
Period size: 46 Copynumber: 3.9 Consensus size: 46
79205335 TAGGATGGTT
79205345 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
79205391 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
79205437 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
*
79205484 GA--ATGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCAT--CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79205526 GCGGGTTACA
Statistics
Matches: 117, Mismatches: 9, Indels: 18
0.81 0.06 0.12
Matches are distributed among these distances:
43 4 0.03
44 2 0.02
45 2 0.02
46 70 0.60
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:79205506 original size:93 final size:93
Alignment explanation
Indices: 79205347--79205517 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
79205337 GGATGGTTGA
* *
79205347 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79205412 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
79205440 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79205505 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79205518 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79208488 original size:15 final size:15
Alignment explanation
Indices: 79208468--79208536 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
79208458 GTATCTTGGG
79208468 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
79208483 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
79208498 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79208513 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79208528 TTTCTTTAT
1 TTTCTTTAT
79208537 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79208537 original size:30 final size:30
Alignment explanation
Indices: 79208459--79208546 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
79208449 CATAGTATCG
* * * *
79208459 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
79208489 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
79208519 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
79208547 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:79211072 original size:46 final size:46
Alignment explanation
Indices: 79210909--79211081 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
79210899 TGGTTGGCAT
*
79210909 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
79210953 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
79210998 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
79211046 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79211082 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:79212695 original size:68 final size:67
Alignment explanation
Indices: 79212623--79212772 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79212613 CATCATGTGT
* * * *
79212623 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79212685 ATGTAG
62 ATGTAG
** * *
79212691 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79212756 AG
66 AG
79212758 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79212773 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79212728 original size:64 final size:64
Alignment explanation
Indices: 79212647--79212830 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
79212637 AGACATTATG
* *
79212647 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79212711 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79212776 AA
63 AA
* * * *
79212778 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79212831 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79217126 original size:68 final size:67
Alignment explanation
Indices: 79217054--79217203 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79217044 CATCATGTGT
* * * *
79217054 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79217116 ATGTAG
62 ATGTAG
** * *
79217122 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79217187 AG
66 AG
79217189 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79217204 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79217159 original size:64 final size:64
Alignment explanation
Indices: 79217078--79217261 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
79217068 AGACATTATG
* *
79217078 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79217142 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79217207 AA
63 AA
* * * *
79217209 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79217262 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79221566 original size:68 final size:67
Alignment explanation
Indices: 79221494--79221643 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79221484 CATCATGTGT
* * * *
79221494 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79221556 ATGTAG
62 ATGTAG
** * *
79221562 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79221627 AG
66 AG
79221629 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79221644 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79221599 original size:64 final size:64
Alignment explanation
Indices: 79221518--79221701 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
79221508 AGACATTATG
* *
79221518 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79221582 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79221647 AA
63 AA
* * * *
79221649 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79221702 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79223793 original size:45 final size:44
Alignment explanation
Indices: 79223626--79223795 Score: 129
Period size: 45 Copynumber: 3.9 Consensus size: 44
79223616 GTATTGTACA
* * * * *
79223626 ATGCCAACATCCCAGATGTGGTCCTACATGATAC-C-TCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAACACAT-ATATCG
* **
79223669 ATGCC-ACTGTTCCAGACAG-GGTCTTACACGAATTA-A-ATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAACACATATATCG
* * * *
79223710 ATGCCAATGTCACAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACATATATCG
*
79223755 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACATAT
79223796 CAAAAATCCT
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
41 24 0.25
42 10 0.10
43 22 0.23
44 5 0.05
45 36 0.37
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAACACATATATCG
Found at i:79225198 original size:43 final size:42
Alignment explanation
Indices: 79225115--79225242 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 42
79225105 TAGGATTTTT
* * *
79225115 GATATGTGTTCTAGTGTAAGACCATGTTTGGG-ATGTTGGCATC
1 GATATGTGTTCTCGTGTAAGACCCTGTCTGGGCA-G-TGGCATC
*
79225158 TATATGTGTTCTCGTGTAAGACCCTGTCTGGGTCAGTGGCATC
1 GATATGTGTTCTCGTGTAAGACCCTGTCTGGG-CAGTGGCATC
* * *
79225201 GATATGTGATT-ACATGTAAGACCAC-GTCTGGGGCATTGGCAT
1 GATATGTG-TTCTCGTGTAAGACC-CTGTCT-GGGCAGTGGCAT
79225243 TGTACGATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
43 64 0.89
44 7 0.10
45 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (42 bp):
GATATGTGTTCTCGTGTAAGACCCTGTCTGGGCAGTGGCATC
Found at i:79226783 original size:79 final size:81
Alignment explanation
Indices: 79226682--79226866 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
79226672 ACGACTCGCT
** * *
79226682 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
79226745 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
79226762 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
79226826 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
79226842 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79226867 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:79226866 original size:40 final size:39
Alignment explanation
Indices: 79226675--79226866 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
79226665 GGATATAACG
* ** * *
79226675 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
79226715 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
79226755 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
79226794 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
79226834 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
79226867 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:79230530 original size:24 final size:24
Alignment explanation
Indices: 79230465--79230535 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
79230455 CTGTCAGGAG
*
79230465 AGGATTTAGGAGTTGATAAGAGAT
1 AGGATTTAGGAGTTGATAAGGGAT
79230489 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
79230513 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
79230536 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:79231531 original size:16 final size:15
Alignment explanation
Indices: 79231505--79231534 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
79231495 ACTAGATCGG
79231505 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
79231520 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
79231535 TTGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:79232040 original size:28 final size:27
Alignment explanation
Indices: 79231948--79232059 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
79231938 AGGAAGCGTC
* **
79231948 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
79231975 CTGGTGGCTCTACCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGTT
79232002 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGT-T
* *
79232030 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
79232056 CTGG
1 CTGG
79232060 CAGCCATGTT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:79232054 original size:54 final size:54
Alignment explanation
Indices: 79231948--79232059 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
79231938 AGGAAGCGTC
* *
79231948 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATATATCTGTT
* * **
79232002 CTGGTGGCTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTACCACATATATCTGTT
79232056 CTGG
1 CTGG
79232060 CAGCCATGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATATATCTGTT
Found at i:79238307 original size:24 final size:24
Alignment explanation
Indices: 79238275--79238350 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
79238265 AAAGTCTATC
*
79238275 GGGAGAGGATTTAGGAGTTGATAA
1 GGGATAGGATTTAGGAGTTGATAA
79238299 GGGATAGGATTTAGGAGTTGATAA
1 GGGATAGGATTTAGGAGTTGATAA
**
79238323 GGGATAGGATTTAGGAGCAGATAA
1 GGGATAGGATTTAGGAGTTGATAA
79238347 GGGA
1 GGGA
79238351 GGAAATCTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.34, C:0.01, G:0.41, T:0.24
Consensus pattern (24 bp):
GGGATAGGATTTAGGAGTTGATAA
Found at i:79238362 original size:48 final size:48
Alignment explanation
Indices: 79238275--79238373 Score: 112
Period size: 48 Copynumber: 2.0 Consensus size: 48
79238265 AAAGTCTATC
** * *
79238275 GGGAGAGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AA
1 GGGAGAGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAA
*
79238323 GGGATAGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAA
1 GGGAGAGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAA
79238372 GG
1 GG
79238374 AACAAAAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
46 3 0.07
48 36 0.84
49 4 0.09
ACGTcount: A:0.34, C:0.04, G:0.39, T:0.22
Consensus pattern (48 bp):
GGGAGAGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAA
Found at i:79241267 original size:49 final size:49
Alignment explanation
Indices: 79241201--79241596 Score: 729
Period size: 49 Copynumber: 8.1 Consensus size: 49
79241191 TTTACCACAT
* *
79241201 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79241250 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79241299 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79241348 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79241397 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79241446 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
79241495 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
79241544 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
79241593 ATAT
1 ATAT
79241597 ATTATTATGT
Statistics
Matches: 343, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 343 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.34
Consensus pattern (49 bp):
ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:79244028 original size:27 final size:27
Alignment explanation
Indices: 79243990--79244098 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
79243980 AAGCGTCCTA
*
79243990 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
79244017 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
* *
79244044 GTGGCTCTGCCACGATTATCTGTATCTA
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * * *
79244072 GTGACTCTGTCAC-ATTAGCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
79244098 G
1 G
79244099 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 45 0.65
28 17 0.25
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:79244094 original size:54 final size:54
Alignment explanation
Indices: 79243990--79244098 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
79243980 AAGCGTCCTA
* * **
79243990 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATAGCTGTTCTG
* * *
79244044 GTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TAGCTGTTCTG
1 GTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATAGCTGTTCTG
79244098 G
1 G
79244099 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 30 0.64
55 17 0.36
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATAGCTGTTCTG
Found at i:79253583 original size:47 final size:45
Alignment explanation
Indices: 79253438--79253706 Score: 170
Period size: 47 Copynumber: 5.8 Consensus size: 45
79253428 TGATTTGTGC
* * *
79253438 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGC-CACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCACA-GA-GATA
* * *
79253484 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-T-ACAGAAATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCACAGAGAT-A
*
79253530 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTC-ACAGAGATA
* * * * * *
79253579 GCCAGTGTAAGACGTGTCTAGGACACGCATCGGCT-A-AGCGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCACAGAGAT-A
* * ** * *
79253623 GCTAGTGTAAGACATGTCTAGGACATGCATTAGCACACATGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCACA-G-A-GATA
** *
79253671 GCCAAAGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79253707 AATTTATCCC
Statistics
Matches: 173, Mismatches: 32, Indels: 32
0.73 0.14 0.14
Matches are distributed among these distances:
43 4 0.02
44 30 0.17
45 2 0.01
46 23 0.13
47 59 0.34
48 26 0.15
49 16 0.09
50 13 0.08
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCACAGAGATA
Found at i:79262302 original size:44 final size:44
Alignment explanation
Indices: 79262250--79262395 Score: 185
Period size: 43 Copynumber: 3.4 Consensus size: 44
79262240 TATGTGTTAT
*
79262250 CATGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTTA
* *
79262294 CTTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
* * *
79262336 CCTGTAAGACC-CTGTCTGGGATAATGGCATCGATATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTTA
79262379 CATGTAAGACCACGTCT
1 CATGTAAGACCACGTCT
79262396 AGGTCGTTGG
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
42 29 0.33
43 30 0.34
44 30 0.34
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
Found at i:79266540 original size:39 final size:39
Alignment explanation
Indices: 79266459--79266622 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
79266449 TATGGTAACC
* *
79266459 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
79266499 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79266538 CGCACATATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACA-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
79266578 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79266617 CGCACA
1 CGCACA
79266623 TTCATTCACA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
39 62 0.54
40 52 0.46
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:79266566 original size:79 final size:79
Alignment explanation
Indices: 79266459--79266611 Score: 254
Period size: 79 Copynumber: 1.9 Consensus size: 79
79266449 TATGGTAACC
*
79266459 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCC
79266524 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
79266538 CGCACATATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCACACAATTGCCTTCGGGCTTAGC
1 CGCACA-AATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGC
79266602 CCGGATATCA
65 CCGGATATCA
79266612 CAATTCGCAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
79 58 0.84
80 11 0.16
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:79270628 original size:27 final size:27
Alignment explanation
Indices: 79270593--79270646 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79270583 TGTTATGTGA
* *
79270593 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
79270620 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
79270647 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:79272751 original size:42 final size:41
Alignment explanation
Indices: 79272705--79272852 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 41
79272695 GTCCCTGACG
* * *
79272705 TGGTCTTACATGGGATCTCACATCGATGCCATATCCCAGATA
1 TGGTCTTACAT-GAATCTCATATCGACGCCATATCCCAGATA
* * *
79272747 TGGTCCTATACA--AATTCTCATTTCGACGCCATGTCCCAGACA
1 TGGT-CT-TACATGAA-TCTCATATCGACGCCATATCCCAGATA
**
79272789 TGGTCTTACATGAAATCTCATATAAACGCCATATCCCAGATA
1 TGGTCTTACATG-AATCTCATATCGACGCCATATCCCAGATA
*
79272831 TGGTCTTACATGATAACTCATA
1 TGGTCTTACATGA-ATCTCATA
79272853 CTGATGCCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
40 4 0.05
41 4 0.05
42 71 0.82
43 4 0.05
44 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (41 bp):
TGGTCTTACATGAATCTCATATCGACGCCATATCCCAGATA
Found at i:79280201 original size:52 final size:48
Alignment explanation
Indices: 79280160--79280310 Score: 173
Period size: 47 Copynumber: 3.2 Consensus size: 48
79280150 CTTCGGAGAA
79280160 ATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
* * * *
79280208 -TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
* * ** * * *
79280255 -TGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
79280301 TATGTGATAT
1 -ATGTGATAT
79280311 ATGACTATGT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 26 0.30
47 54 0.61
48 8 0.09
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
Found at i:79280228 original size:47 final size:47
Alignment explanation
Indices: 79280161--79280281 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
79280151 TTCGGAGAAA
* *
79280161 TGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
79280208 TGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATCAG
1 TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
* *
79280255 TGTGATATGTGAT-CCGTGTAAGACCAT
1 TGTGATATGTGCTACCGTATAAGACCAT
79280282 GGCTGGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
46 12 0.18
47 55 0.82
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
TGTGATATGTGCTACCGTATAAGACCATATCCGGGATATGGCATCAG
Found at i:79284235 original size:54 final size:54
Alignment explanation
Indices: 79284153--79284290 Score: 215
Period size: 54 Copynumber: 2.6 Consensus size: 54
79284143 GTGACAAAGT
*
79284153 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
* **
79284207 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACGGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
*
79284261 CACTAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATTGTGGCATAGCCAC
79284291 TAGGACGCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
Found at i:79284293 original size:27 final size:26
Alignment explanation
Indices: 79284135--79284290 Score: 168
Period size: 27 Copynumber: 5.8 Consensus size: 26
79284125 GCGAGGCTGC
* * *
79284135 CAGATATTGTGACAAAGTCACCAGAT
1 CAGATATTGTGGCAGAGCCACCAGAT
*
79284161 ACAGATATTGTGGCAGAGCCACCAGAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
*
79284188 CAAATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* * *
79284215 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
* *
79284242 CGGATATATGTGGCAGAGCCACTAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
79284269 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
79284291 TAGGACGCTT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.07
27 96 0.89
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:79284461 original size:28 final size:26
Alignment explanation
Indices: 79284399--79284461 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
79284389 AAAGTAACCC
* * *
79284399 TAGGGGTATAATAGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
79284425 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
79284453 TAGGGGTAT
1 TAGGGGTAT
79284462 TCAAGTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 21 0.66
28 11 0.34
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:79288476 original size:29 final size:29
Alignment explanation
Indices: 79288443--79288603 Score: 148
Period size: 29 Copynumber: 5.6 Consensus size: 29
79288433 TGACGAGATC
*
79288443 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGAGCTGGAAATATAT
79288472 GGCACTAAGTGTGC-ATGCTGGAAATATAT
1 GGCACTAAGTGTGCGA-GCTGGAAATATAT
* * *
79288501 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAATATAT
** * ***
79288530 GGCACTGGGTGTGCGAGCTCGAAGGGTAT
1 GGCACTAAGTGTGCGAGCTGGAAATATAT
** * *
79288559 GGCACTGTGTGTGCGGGCT-TAAAT-TACGT
1 GGCACTAAGTGTGCGAGCTGGAAATATA--T
79288588 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
79288604 AATCGAGTAG
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 104 0.95
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAATATAT
Found at i:79294171 original size:3 final size:3
Alignment explanation
Indices: 79294163--79294190 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79294153 GAATTAAATA
79294163 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79294191 CTTCCTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79297527 original size:23 final size:23
Alignment explanation
Indices: 79297497--79297543 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
79297487 GCTGAAAGAG
79297497 TTAGTGGCTACACCGAGGCGAGA
1 TTAGTGGCTACACCGAGGCGAGA
79297520 TTAGTGGCTACACCGAGGCGAGA
1 TTAGTGGCTACACCGAGGCGAGA
79297543 T
1 T
79297544 GATGTTACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.34, T:0.19
Consensus pattern (23 bp):
TTAGTGGCTACACCGAGGCGAGA
Found at i:79304588 original size:43 final size:44
Alignment explanation
Indices: 79304540--79304623 Score: 100
Period size: 43 Copynumber: 1.9 Consensus size: 44
79304530 CGAAGCATAT
* *
79304540 TGAAGTCACTAGCCTTATCT-CTCTGAAGT-GCAGTGGAGCAGAC
1 TGAAGTCACAAGCCTCATCTCCT-TGAAGTCGCAGTGGAGCAGAC
* * *
79304583 TGAAGTTACAAGTCTCATCTCCTTGAAGTCGTAGTGGAGCA
1 TGAAGTCACAAGCCTCATCTCCTTGAAGTCGCAGTGGAGCA
79304624 TACTAAATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 22 0.65
44 12 0.35
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (44 bp):
TGAAGTCACAAGCCTCATCTCCTTGAAGTCGCAGTGGAGCAGAC
Found at i:79305011 original size:43 final size:44
Alignment explanation
Indices: 79304910--79305016 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 44
79304900 AGCTTTAACC
* * * ***
79304910 CCCTAAGCAGTAGGGTAACAAGCTAAAGTTTATAGATATTATTG
1 CCCTAAGCAGTAGGGTAACAAGCCAAAGTTTATAAACATTAAAA
* *
79304954 CCCTAAGCAATAGGGTAACAAGCCAAA-TTT-TCAAACCTTAAAA
1 CCCTAAGCAGTAGGGTAACAAGCCAAAGTTTAT-AAACATTAAAA
79304997 CCCTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGTAACA
79305017 GGTTGAGTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.02
43 27 0.51
44 25 0.47
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAAGCCAAAGTTTATAAACATTAAAA
Found at i:79305048 original size:42 final size:44
Alignment explanation
Indices: 79304989--79305108 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 44
79304979 AATTTTCAAA
* * *
79304989 CCTTAAAACCCTAAGCAGTAGGGTAACAGGTTGA-GTTTAC-AG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
* * * **
79305031 -ATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAG
1 CCT-TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
*
79305075 CCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA
79305109 AAATCAAATA
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 4 0.07
44 28 0.47
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
Found at i:79305208 original size:42 final size:42
Alignment explanation
Indices: 79305151--79305278 Score: 204
Period size: 41 Copynumber: 3.1 Consensus size: 42
79305141 GAGCAGCTAA
* *
79305151 AAGCCACAGTAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
* *
79305193 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGG-ATTAATCA
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
*
79305234 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATTG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
79305276 AAG
1 AAG
79305279 TCACGTGTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 39 0.50
42 39 0.50
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
Found at i:79306643 original size:3 final size:3
Alignment explanation
Indices: 79306635--79306871 Score: 65
Period size: 3 Copynumber: 76.7 Consensus size: 3
79306625 GAATTAAATA
* ** *
79306635 TAT TAT TAT TAT TAT TAT TAT TAT TAT TCT TCC TGT TAT CT-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * *
79306680 TAC TAT TAC TAT TGT TAT TAC TACT TCCAT TAT TTT TAT T-T CTAACT
1 TAT TAT TAT TAT TAT TAT TAT TA-T T--AT TAT TAT TAT TAT -T-A-T
* * ** *
79306727 T-T TAT TTT TAT GTAT ATAT TAT TAT T-T ATAT CAT CGT TAT TAT TAC
1 TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * *
79306773 TAT TAT TAAA TAT CT-T TAT TAT TAC TAT TAT TTT TGT TCCT T-T TAT
1 TAT TAT T-AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * * * **
79306819 TAT TGTT TAT CAT CAT TA- TAT TAT TAT TAT TAC TCC TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
79306864 TAT CAT TA
1 TAT TAT TA
79306872 CTTCTTTTTT
Statistics
Matches: 173, Mismatches: 41, Indels: 40
0.68 0.16 0.16
Matches are distributed among these distances:
2 10 0.06
3 142 0.82
4 16 0.09
5 3 0.02
6 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:79310104 original size:17 final size:16
Alignment explanation
Indices: 79310072--79310102 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79310062 TTTTCGCAAA
*
79310072 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
79310088 AAAATCTTTGTTTTT
1 AAAATCTTTGTTTTT
79310103 TGTAAGCCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:79311118 original size:27 final size:27
Alignment explanation
Indices: 79311070--79311228 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
79311060 GCGAGGTTGC
* *
79311070 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
79311097 GAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
79311123 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
79311150 CAGATAATTGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
79311177 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
79311204 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
79311229 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 9 0.08
27 100 0.88
28 5 0.04
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:79311160 original size:54 final size:54
Alignment explanation
Indices: 79311088--79311228 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
79311078 GTGACGAAGT
* *
79311088 CACCAGAT-AGAGATATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGATCAGATA-ATTGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
79311142 CACCAGATCAGATAATTGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
79311196 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
79311229 GACGCTTCCT
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
54 80 0.95
55 4 0.05
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
Found at i:79316128 original size:15 final size:15
Alignment explanation
Indices: 79316086--79316131 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
79316076 AAAATATTTG
79316086 AAATAATGTATATAT
1 AAATAATGTATATAT
79316101 AAAATAA--TA-ATAT
1 -AAATAATGTATATAT
79316114 AAATAATGTATATAT
1 AAATAATGTATATAT
79316129 AAA
1 AAA
79316132 AGAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.22
13 4 0.15
14 4 0.15
15 7 0.26
16 6 0.22
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
AAATAATGTATATAT
Found at i:79316146 original size:31 final size:28
Alignment explanation
Indices: 79316086--79316140 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
79316076 AAAATATTTG
79316086 AAATAATGTATATATAAAATAATAATAT
1 AAATAATGTATATATAAAATAATAATAT
*
79316114 AAATAATGTATATATAAAAGAATAATA
1 AAATAATGTATATATAAAATAATAATA
79316141 ATATAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AAATAATGTATATATAAAATAATAATAT
Found at i:79318158 original size:34 final size:34
Alignment explanation
Indices: 79318112--79318201 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 34
79318102 TTGAACAGTC
* **
79318112 TGGGCCTAAGCCCATATCAGTCGCAATATCAATA
1 TGGGCCTTAGCCCATATCAGTAACAATATCAATA
*
79318146 TGGGCCTTAGCCCA-ATACAGTAACAATATCAATG
1 TGGGCCTTAGCCCATAT-CAGTAACAATATCAATA
* *
79318180 TGGGTCTTAGCCCATTTCAGTA
1 TGGGCCTTAGCCCATATCAGTA
79318202 CAGTATCCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
33 2 0.04
34 45 0.94
35 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTAACAATATCAATA
Found at i:79324096 original size:19 final size:20
Alignment explanation
Indices: 79324065--79324114 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
79324055 ATTTTGATAA
*
79324065 ACATGATATGTATGATATGC
1 ACATGAGATGTATGATATGC
79324085 ACATGA-ATGTATGATATGC
1 ACATGAGATGTATGATATGC
79324104 ACATGAGATGT
1 ACATGAGATGT
79324115 TCATAAATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 19 0.66
20 10 0.34
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (20 bp):
ACATGAGATGTATGATATGC
Found at i:79324214 original size:24 final size:24
Alignment explanation
Indices: 79324159--79324346 Score: 244
Period size: 24 Copynumber: 8.0 Consensus size: 24
79324149 GAGGAAGTGA
79324159 AAAAGGGCTTATGCCCCAG-TAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
79324181 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79324205 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
79324229 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
79324253 AAAAGGGCTTACGCCCC--TTAGT-
1 AAAAGGGCTTATGCCCCAGTTA-TC
* *
79324275 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
79324299 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
79324323 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79324347 ATGATAAAGC
Statistics
Matches: 148, Mismatches: 10, Indels: 13
0.87 0.06 0.08
Matches are distributed among these distances:
22 36 0.24
23 5 0.03
24 96 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:79324280 original size:70 final size:70
Alignment explanation
Indices: 79324158--79324332 Score: 239
Period size: 70 Copynumber: 2.5 Consensus size: 70
79324148 GGAGGAAGTG
* *
79324158 AAAAAGGGCTTATGCCCCAG-TATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCA-TTATCAAAAGGGCTTATGCCCC
79324222 AGTTAT
65 AGTTAT
* *
79324228 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCC-TTAGT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCATTA-TCAAAAGGGCTTATGCCC
79324291 CAGTTAT
64 CAGTTAT
*
79324298 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
79324333 AGGCCTCCAG
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
70 70 0.74
71 9 0.10
72 15 0.16
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCATTATCAAAAGGGCTTATGCCCCA
GTTAT
Found at i:79324297 original size:46 final size:46
Alignment explanation
Indices: 79324159--79324325 Score: 246
Period size: 46 Copynumber: 3.6 Consensus size: 46
79324149 GAGGAAGTGA
*
79324159 AAAAGGGCTTATGCCCCAGTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCATTATTAAAGGGCTTATGCCCCAGTTATC
*
79324205 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCA-TTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
79324253 AAAAGGGCTTACGCCCC-TTAGTTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCATTA-TTAAAGGGCTTATGCCCCAGTTATC
*
79324299 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCA-TTATTAAA
79324326 AGAGGCTAGG
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
46 58 0.53
47 9 0.08
48 42 0.39
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCATTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:79324320 original size:94 final size:95
Alignment explanation
Indices: 79324159--79324346 Score: 283
Period size: 94 Copynumber: 2.0 Consensus size: 95
79324149 GAGGAAGTGA
* *
79324159 AAAAGGGCTTATGCCCCAGTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTACGCCCCAGTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
*
79324224 TTATCAAAAG-GGCTTATGCC-CCAGTTATC
66 TTATCAAAAGAGGC-TAGGCCTCCAGTTATC
* *
79324253 AAAAGGGCTTACGCCCC-TTAGTTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTA-TTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
79324317 GTTATTAAAAGAGGCTAGGCCTCCAGTTAT
65 GTTATCAAAAGAGGCTAGGCCTCCAGTTAT
79324347 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
93 2 0.02
94 72 0.85
95 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (95 bp):
AAAAGGGCTTACGCCCCAGTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
TTATCAAAAGAGGCTAGGCCTCCAGTTATC
Found at i:79324573 original size:31 final size:31
Alignment explanation
Indices: 79324538--79324632 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
79324528 CGTTTACAGT
79324538 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79324569 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
79324600 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79324631 AA
1 AA
79324633 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79327400 original size:13 final size:13
Alignment explanation
Indices: 79327382--79327418 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79327372 TAATTTTATG
79327382 TTATTTTTTATTT
1 TTATTTTTTATTT
79327395 TTA-TTTTTA-TT
1 TTATTTTTTATTT
79327406 TTATGTTTTTATT
1 TTAT-TTTTTATT
79327419 AATTTCACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.24
12 6 0.29
13 9 0.43
14 1 0.05
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:79327402 original size:24 final size:25
Alignment explanation
Indices: 79327370--79327418 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
79327360 GATGATGATG
79327370 TTTAATTTTATGTTAT-TTTTTATT
1 TTTAATTTTATGTTATGTTTTTATT
* *
79327394 TTTATTTTTATTTTATGTTTTTATT
1 TTTAATTTTATGTTATGTTTTTATT
79327419 AATTTCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (25 bp):
TTTAATTTTATGTTATGTTTTTATT
Found at i:79327406 original size:19 final size:19
Alignment explanation
Indices: 79327382--79327418 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79327372 TAATTTTATG
*
79327382 TTATTTTTTATTTTTATTT
1 TTATTTTATATTTTTATTT
*
79327401 TTATTTTATGTTTTTATT
1 TTATTTTATATTTTTATT
79327419 AATTTCACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (19 bp):
TTATTTTATATTTTTATTT
Found at i:79329871 original size:14 final size:13
Alignment explanation
Indices: 79329850--79329882 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
79329840 AAATATTTGA
79329850 CTTGTTCTTAATT
1 CTTGTTCTTAATT
79329863 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
79329877 CTTGTT
1 CTTGTT
79329883 TTGATATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:79335106 original size:13 final size:13
Alignment explanation
Indices: 79335088--79335112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79335078 AGCTAGACTC
79335088 ACACATGCTACAA
1 ACACATGCTACAA
79335101 ACACATGCTACA
1 ACACATGCTACA
79335113 TTAGTCTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.08, T:0.16
Consensus pattern (13 bp):
ACACATGCTACAA
Done.