Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 269 of 345
Found at i:80015744 original size:51 final size:49
Alignment explanation
Indices: 80015626--80015854 Score: 255
Period size: 49 Copynumber: 4.6 Consensus size: 49
80015616 ATTGTGAGGC
*
80015626 CACGTGTGTAGTACTAAGTGCCGGCTACTACGTGTAC-CGGATAATTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAATTGGT
* * * * *
80015675 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAA-TT-GGT
**
80015726 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAATT-GGT
* * * **
80015776 CATGTGTATAGTACTAAGTGCAGGCTACTACATGTACAGGATAATTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAATTGGT
***
80015825 CGTATGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
80015855 TGCGTACTAG
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 67 0.44
50 47 0.31
51 37 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAATTGGT
Found at i:80017995 original size:46 final size:46
Alignment explanation
Indices: 80017838--80018010 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 46
80017828 ATTTGAGTGT
* * * *
80017838 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATGGGCCAC-ATTATGA
1 GAGC-AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GATGA
* * *
80017884 GAGCCACTGTAAGACCATGTCTGGGACATGGCATC--CCATTGAGACGA
1 GAG-CAGTGTAAGA-CATGTCTGGGACATGGCATCGGCC-TCGAGATGA
80017931 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
1 GAGC-AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATG-A
*
80017978 -AGCAGTGTAAGACCATGTCTGGGATATGGCATC
1 GAGCAGTGTAAGA-CATGTCTGGGACATGGCATC
80018011 AGCACATTAT
Statistics
Matches: 105, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
45 14 0.13
46 50 0.48
47 36 0.34
48 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGA
Found at i:80025497 original size:47 final size:46
Alignment explanation
Indices: 80025393--80025658 Score: 226
Period size: 47 Copynumber: 5.7 Consensus size: 46
80025383 ATTTGAGTGT
* * * * *
80025393 GAGCTAGTGTAAGA-CATGTCTAGGACATGCATGGGCCAC-ATTATGG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCAT-CGCCTCGA-GATGA
* * * *
80025439 GAGCCACTGTAAGACCATGTCTGGGACATGGCATC-CCATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGCC-TCGAGATGA
80025486 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAGATG-A
*
80025533 -AGC-AGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAGATGA
* * * *
80025577 TAG-TCAGTGTAAGACCATGTTTGGGACATAGCATCGACTGGAGAT-A
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGCCTCGAGATGA
* *
80025623 TGAGCCAGTGTAAGACCATGTCTGGGATATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
80025659 AGTACATTAT
Statistics
Matches: 183, Mismatches: 22, Indels: 29
0.78 0.09 0.12
Matches are distributed among these distances:
44 4 0.02
45 42 0.23
46 47 0.26
47 77 0.42
48 13 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAGATGA
Found at i:80028186 original size:46 final size:46
Alignment explanation
Indices: 80028044--80028252 Score: 228
Period size: 46 Copynumber: 4.5 Consensus size: 46
80028034 TTTGTGTGCC
* ** *
80028044 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCT
* * ** *
80028090 AGTGTAAGACCATGTCTGGGACATGGGATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGAGAGCT
*
80028138 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGATGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATG-AGAGCT
* * *
80028184 AGTGTAAGACATGTCTGGGACATGTATCGG-CTACAAGATG-TATC-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGAGAGCT
80028228 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
80028253 GCATTAGCAC
Statistics
Matches: 139, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
44 9 0.06
45 19 0.14
46 60 0.43
47 28 0.20
48 23 0.17
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCT
Found at i:80028306 original size:24 final size:24
Alignment explanation
Indices: 80028229--80028306 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
80028219 AGATGTATCA
*
80028229 GTGTAAGACCATGTCTGGGACATG
1 GTGTAAGACCATGTGTGGGACATG
** * * * * * *
80028253 GCATTAGCACGGATATGTGAGAGATA
1 GTGTAAG-AC-CATGTGTGGGACATG
80028279 GTGTAAGACCATGTGTGGGACATG
1 GTGTAAGACCATGTGTGGGACATG
80028303 GTGT
1 GTGT
80028307 CGGCCTTGAT
Statistics
Matches: 35, Mismatches: 17, Indels: 4
0.62 0.30 0.07
Matches are distributed among these distances:
24 18 0.51
25 4 0.11
26 13 0.37
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.26
Consensus pattern (24 bp):
GTGTAAGACCATGTGTGGGACATG
Found at i:80028349 original size:49 final size:47
Alignment explanation
Indices: 80028044--80028404 Score: 216
Period size: 46 Copynumber: 7.7 Consensus size: 47
80028034 TTTGTGTGCC
*
80028044 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-AT-GA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATCGATGAGCT
* * *
80028090 AGTGTAAGACCATGTCTGGGACATGGGATCGGCATTGAGACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGA-TCGATGAGCT
* * * * *
80028138 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCA-AGATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGATG--AGCT
* * ** * *
80028184 AGTGTAAGA-CATGTCTGGGACAT-GTATCGGCTACA-AGATGTATC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGATG-AGCT
* *
80028228 AGTGTAAGACCATGTCTGGGACATGGCATTAGCACGGATATG-T-GA-GAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-AC---T-TGATCGATGAGCT
* ** * *
80028278 AGTGTAAGACCATGTGTGGGACATGGTGTCGGCCTTGATTTCGAT-AGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TCGATGAGCT
* * *
80028327 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGATGAGCT
80028374 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
80028405 GTATTATACC
Statistics
Matches: 253, Mismatches: 37, Indels: 49
0.75 0.11 0.14
Matches are distributed among these distances:
43 2 0.01
44 10 0.04
45 24 0.09
46 64 0.25
47 62 0.25
48 27 0.11
49 34 0.13
50 27 0.11
51 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGATGAGCT
Found at i:80032884 original size:40 final size:40
Alignment explanation
Indices: 80032720--80032884 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
80032710 CGGAATTTAA
** *
80032720 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80032760 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80032800 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
80032840 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80032880 CCGGA
1 CCGGA
80032885 CATCATTCGA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 91 0.86
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80037060 original size:16 final size:15
Alignment explanation
Indices: 80037036--80037065 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80037026 AACTGTTTTA
80037036 TTACAAATTTCACTC
1 TTACAAATTTCACTC
80037051 TTACATAATTTCACT
1 TTACA-AATTTCACT
80037066 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:80037343 original size:23 final size:23
Alignment explanation
Indices: 80037268--80037345 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
80037258 CGAAGCTATG
80037268 TAGTACACATAGTAGCCTGCACT
1 TAGTACACATAGTAGCCTGCACT
* * ** *
80037291 TAGAACTACACAT-GCAACCAACAAT
1 TAG---TACACATAGTAGCCTGCACT
80037316 CTAGTACACATAGTAGCCTGCACT
1 -TAGTACACATAGTAGCCTGCACT
80037340 TAGTAC
1 TAGTAC
80037346 TACACACGTG
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
23 16 0.40
24 7 0.17
25 7 0.17
26 10 0.25
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (23 bp):
TAGTACACATAGTAGCCTGCACT
Found at i:80037351 original size:26 final size:25
Alignment explanation
Indices: 80037271--80037351 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 25
80037261 AGCTATGTAG
80037271 TACACATAGTAGCCTGCACTTAGAAC
1 TACACATAGTAGCCTGCACTTAG-AC
* * ** *
80037297 TACACAT-GCAACCAACAATCTAG--
1 TACACATAGTAGCCTGCACT-TAGAC
80037320 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAG-AC
80037346 TACACA
1 TACACA
80037352 CGTGACATAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
23 10 0.25
24 7 0.17
25 7 0.17
26 16 0.40
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.22
Consensus pattern (25 bp):
TACACATAGTAGCCTGCACTTAGAC
Found at i:80037469 original size:101 final size:101
Alignment explanation
Indices: 80037319--80037503 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
80037309 CAACAATCTA
* * * *
80037319 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATAACCATCTGATACATGTAGTGGCT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACATAACCATCTGATACACGTAGTAGCC
*
80037384 TGCACTTAGTACTACACACGTGATTGAAGTTGTCGG
66 TGCACTTAATACTACACACGTGATTGAAGTTGTCGG
* * * * *
80037420 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACATAACCATCTGATACACGTAGTAGCC
*
80037485 TGCACTTAATGCTACACAC
66 TGCACTTAATACTACACAC
80037504 ATGACCTAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACATAACCATCTGATACACGTAGTAGCC
TGCACTTAATACTACACACGTGATTGAAGTTGTCGG
Found at i:80037489 original size:50 final size:50
Alignment explanation
Indices: 80037270--80037554 Score: 232
Period size: 50 Copynumber: 5.7 Consensus size: 50
80037260 AAGCTATGTA
* * * * *
80037270 GTACACATAGTAGCCTGCACTTAGAACTACACATGCAACC-AACAATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTG
* * *
80037319 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACATAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTG
* ** * * * * * * *
80037369 ATACATGTAGTGGCTTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA-CTATCTG
* *
80037420 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTG
* * * ** * *
80037470 GTACACGTAGTAGCCTGCACTTAATGCTACACACATGACCTAAAACCATCTT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACTATCTG
** * * *
80037522 AAACAAATAGTAGCCTACACATAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
80037555 TGTGTTCTCA
Statistics
Matches: 184, Mismatches: 46, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
49 36 0.20
50 80 0.43
51 35 0.19
52 33 0.18
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTG
Found at i:80047929 original size:49 final size:50
Alignment explanation
Indices: 80047648--80047919 Score: 228
Period size: 50 Copynumber: 5.4 Consensus size: 50
80047638 GTTGTGAGAA
* * * ***
80047648 CACATATGTAGTACTATGTGCAGACTACTATGTGTTTAAGATGGGTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGAT-GG-TTAGGT
** * * * *
80047700 CATGTGTGTAATACTAAGTGGA-AGCTACTACGTGTACTAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGA-CTACTACGTGTACCAGATGGTTAGGT
* * * * * * *** *
80047750 CGCATGTGCAGAACTAAGTGCAGGCTACTATGCGTACTC-GACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGACTACTACGTGTAC-CAGA-TGGTT-AGGT
*
80047801 CACATGTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGT
* * *
80047851 CACATGTGTAGTACTAATTGCAGACTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGT
80047900 CACATGTGTAGTACTAAGTG
1 CACATGTGTAGTACTAAGTG
80047920 TAGGATACTA
Statistics
Matches: 172, Mismatches: 41, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
49 23 0.13
50 80 0.47
51 38 0.22
52 31 0.18
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGT
Found at i:80049323 original size:27 final size:26
Alignment explanation
Indices: 80049275--80049334 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80049265 GCGAGGCTAC
*
80049275 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80049302 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80049328 CAGATAT
1 CAGATAT
80049335 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80049370 original size:21 final size:22
Alignment explanation
Indices: 80049341--80049382 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
80049331 ATATATATAT
*
80049341 ATATATGTGGCGAAGCCACCAG
1 ATATATGTGACGAAGCCACCAG
*
80049363 ATAT-TGTGACGAAGTCACCA
1 ATATATGTGACGAAGCCACCA
80049383 TAATAGATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (22 bp):
ATATATGTGACGAAGCCACCAG
Found at i:80056193 original size:46 final size:45
Alignment explanation
Indices: 80056140--80056315 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
80056130 TGGTTGAGCA
*
80056140 TCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
80056186 TCTGAACTCGTTGAGTTAAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
80056233 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
80056279 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80056316 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:80056306 original size:93 final size:93
Alignment explanation
Indices: 80056137--80056307 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
80056127 GGATGGTTGA
* * * *
80056137 GCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80056202 TAAGTCCGAGTTCGAGAGATGTAACTAG
66 TAAGTCCGAGTTCGAGAGATGTAACTAG
* *
80056230 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
* *
80056295 TGAGTCTGAGTTC
66 TAAGTCCGAGTTC
80056308 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TAAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:80059548 original size:27 final size:26
Alignment explanation
Indices: 80059500--80059559 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
80059490 GCGAGGTTGC
*
80059500 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80059527 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
80059553 CAGATAT
1 CAGATAT
80059560 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80066087 original size:20 final size:20
Alignment explanation
Indices: 80066062--80066107 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
80066052 ATTTTGTACG
*
80066062 TTGGCCTATTTTCTCTGTTT
1 TTGGCCTATTTTCTCCGTTT
80066082 TTGGCCTATTTTCTCCGTTT
1 TTGGCCTATTTTCTCCGTTT
80066102 TTGGCC
1 TTGGCC
80066108 CGTTTCTCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.04, C:0.24, G:0.17, T:0.54
Consensus pattern (20 bp):
TTGGCCTATTTTCTCCGTTT
Found at i:80067448 original size:18 final size:18
Alignment explanation
Indices: 80067414--80067464 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
80067404 TTCAAGATAT
* *
80067414 ATCAAT-AAAAGTCATAA
1 ATCAATCAAAATTTATAA
80067431 ATCAATCAAAATTTATAA
1 ATCAATCAAAATTTATAA
80067449 ATCAATCAAAATTTAT
1 ATCAATCAAAATTTAT
80067465 CCTAAACATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 6 0.19
18 25 0.81
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (18 bp):
ATCAATCAAAATTTATAA
Found at i:80069877 original size:20 final size:20
Alignment explanation
Indices: 80069852--80069904 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
80069842 GTTCGCTTCT
80069852 TCCACGCCCGTGTATAAAGG
1 TCCACGCCCGTGTATAAAGG
80069872 TCCACGCCCGTGTATAAAGG
1 TCCACGCCCGTGTATAAAGG
80069892 TCCACGCCCGTGT
1 TCCACGCCCGTGT
80069905 TGTTTTGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.21
Consensus pattern (20 bp):
TCCACGCCCGTGTATAAAGG
Found at i:80079823 original size:40 final size:39
Alignment explanation
Indices: 80079720--80079831 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
80079710 TGGAAATTAT
* * * *
80079720 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTGGCTAA
* * *
80079760 ATCCGGGCTAATACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTGGCTAA
80079800 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
80079832 ATCGTGATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.05
40 57 0.92
41 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGGCTAA
Found at i:80079844 original size:40 final size:38
Alignment explanation
Indices: 80079674--80079861 Score: 128
Period size: 40 Copynumber: 4.8 Consensus size: 38
80079664 TGAGAAATTG
* * * *
80079674 AATG-ATATCCGGGCTAAGCCCCGAAGACGTTAATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGCATT--TG-TGCA
* * * *
80079714 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTATGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * * *
80079751 AGTGGCTACATCCGGGCTAATACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
80079791 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
80079831 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
80079862 CTTGGTGCGG
Statistics
Matches: 115, Mismatches: 26, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.03
38 1 0.01
39 2 0.02
40 107 0.93
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:80085397 original size:46 final size:46
Alignment explanation
Indices: 80085344--80085519 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80085334 TATTTGGGCA
80085344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80085390 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80085437 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80085483 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80085520 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80085499 original size:93 final size:93
Alignment explanation
Indices: 80085340--80085511 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80085330 GGGATATTTG
* *
80085340 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80085405 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80085433 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80085498 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80085512 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80088178 original size:46 final size:46
Alignment explanation
Indices: 80088125--80088300 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80088115 TATTTGGGCA
80088125 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80088171 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80088218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80088264 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80088301 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80088280 original size:93 final size:93
Alignment explanation
Indices: 80088121--80088292 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80088111 GGGATATTTG
* *
80088121 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80088186 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80088214 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80088279 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80088293 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80090951 original size:46 final size:46
Alignment explanation
Indices: 80090898--80091073 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80090888 TATTTGGGCA
80090898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80090944 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80090991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80091037 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80091074 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80091053 original size:93 final size:93
Alignment explanation
Indices: 80090894--80091065 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80090884 GGGATATTTG
* *
80090894 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80090959 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80090987 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80091052 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80091066 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80096321 original size:40 final size:39
Alignment explanation
Indices: 80096194--80096338 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
80096184 TGCTGGAAAT
* * * *
80096194 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
80096233 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* *
80096273 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
80096313 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
80096339 CTTGGTGCGG
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 88 0.99
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:80098157 original size:20 final size:19
Alignment explanation
Indices: 80098133--80098176 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
80098123 CTAAAGAAAG
80098133 TAAAT-AAAATGAAAAGTAA
1 TAAATGAAAATG-AAAGTAA
*
80098152 TGAAATGCAAATGAAAGTAA
1 T-AAATGAAAATGAAAGTAA
80098172 TAAAT
1 TAAAT
80098177 TTTGAAAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.23
20 12 0.55
21 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.14, T:0.23
Consensus pattern (19 bp):
TAAATGAAAATGAAAGTAA
Found at i:80099933 original size:48 final size:48
Alignment explanation
Indices: 80099865--80100031 Score: 200
Period size: 48 Copynumber: 3.6 Consensus size: 48
80099855 ATATCCATGT
*
80099865 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
* * *** * *
80099913 CGATGCCATGCCCCAAACATGGTCTTACAAACATACCTCTATACGTTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
* *
80099961 CGATGCCATGTCCCGGACATGGTCTTACACTGACACATC--T-CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGT-GC
80100007 CGATG-CATGTCCCAGACAT-GTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
80100032 TATTGGCTCT
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
44 6 0.06
45 16 0.16
46 7 0.07
48 71 0.71
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
Found at i:80116912 original size:40 final size:40
Alignment explanation
Indices: 80116804--80117013 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80116794 CGGGATTTAA
* * * * *
80116804 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80116844 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80116884 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80116924 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80116964 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80117004 CCGGATATAT
1 CCGGATATAT
80117014 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80125046 original size:40 final size:40
Alignment explanation
Indices: 80124938--80125147 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80124928 CGGGATTTAA
* * * * *
80124938 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80124978 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80125018 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80125058 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80125098 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80125138 CCGGATATAT
1 CCGGATATAT
80125148 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80131229 original size:40 final size:40
Alignment explanation
Indices: 80131163--80131329 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80131153 AAATTGAATG
* * *
80131163 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80131202 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80131242 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80131282 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80131322 ATATCCGG
1 ATATCCGG
80131330 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80134124 original size:40 final size:40
Alignment explanation
Indices: 80134057--80134224 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
80134047 AAATTGAATG
* * * * *
80134057 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80134097 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80134137 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80134177 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80134217 ATATCCGG
1 ATATCCGG
80134225 TTATATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 99 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80135865 original size:40 final size:40
Alignment explanation
Indices: 80135802--80135979 Score: 124
Period size: 40 Copynumber: 4.5 Consensus size: 40
80135792 AATGTTTTTT
* * * *
80135802 GCGGTGTTTTTGAAAAAGCGCCGCTAAAGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCAACCTATA
* * * ** * *
80135842 GCGGCGTTTTTTAAAAAGTGCCGCTATA-CTTAATTTTTT
1 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCAACCTATA
* * ** * *
80135881 GCTGCGTTTTTCAAAAAGCGCCATTAATGGTCAACCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCAACCTATA
* * ** * **
80135921 GCGGCGTTTTTTAGAAAGAGCCGCTAGTGGTGGACCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCAACCTATA
*
80135961 GTGGCGTTTTTTAAAAAGC
1 GCGGCGTTTTTTAAAAAGC
80135980 ACCATTGATG
Statistics
Matches: 103, Mismatches: 34, Indels: 2
0.74 0.24 0.01
Matches are distributed among these distances:
39 27 0.26
40 76 0.74
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCAACCTATA
Found at i:80135890 original size:79 final size:79
Alignment explanation
Indices: 80135796--80135946 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 79
80135786 AGATAAAATG
* * * * * *
80135796 TTTTTTGCGGTGTTTTTGAAAAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTTAAAAAGT
1 TTTTTTGCGGCGTTTTTCAAAAAGCGCCACTAAAGCTCAACCTATAGCGGCGTTTTTTAAAAAGA
80135861 GCCGCTATACTTAA
66 GCCGCTATACTTAA
* * * * *
80135875 TTTTTTGCTGCGTTTTTCAAAAAGCGCCATTAATGGTCAACCTATAGCGGCGTTTTTTAGAAAGA
1 TTTTTTGCGGCGTTTTTCAAAAAGCGCCACTAAAGCTCAACCTATAGCGGCGTTTTTTAAAAAGA
80135940 GCCGCTA
66 GCCGCTA
80135947 GTGGTGGACC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (79 bp):
TTTTTTGCGGCGTTTTTCAAAAAGCGCCACTAAAGCTCAACCTATAGCGGCGTTTTTTAAAAAGA
GCCGCTATACTTAA
Found at i:80136007 original size:40 final size:39
Alignment explanation
Indices: 80135884--80136009 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
80135874 ATTTTTTGCT
* *
80135884 GCGTTTTTCAAAAAGCGCCATTAATGGTCAACCTATAGCG
1 GCGTTTTTTAAAAAGC-CCATTGATGGTCAACCTATAGCG
* ** *
80135924 GCGTTTTTTAGAAAGAGCCGC-TAG-TGGTGGACCTATAGTG
1 GCGTTTTTTA-AAA-AGCC-CATTGATGGTCAACCTATAGCG
* *
80135964 GCGTTTTTTAAAAAGCACCATTGATGGTCAATCAATAGCG
1 GCGTTTTTTAAAAAGC-CCATTGATGGTCAACCTATAGCG
80136004 GCGTTT
1 GCGTTT
80136010 GCCACTAAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
38 4 0.06
39 6 0.09
40 49 0.72
41 5 0.07
42 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (39 bp):
GCGTTTTTTAAAAAGCCCATTGATGGTCAACCTATAGCG
Found at i:80136150 original size:40 final size:40
Alignment explanation
Indices: 80136087--80136176 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
80136077 CTTAATGATT
* *
80136087 GATCTATAGCGGCATTTTCTAAAAAGCACCGCTAGTGCTC
1 GATCTATAGCAGCATTTTCTAAAAAGCACCGCTAATGCTC
* * ** *
80136127 GATCTATAGCAGCGTTTTTTAAAAAGCGTCGCTAATGTTC
1 GATCTATAGCAGCATTTTCTAAAAAGCACCGCTAATGCTC
*
80136167 AATCTATAGC
1 GATCTATAGC
80136177 GTTGCTTTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (40 bp):
GATCTATAGCAGCATTTTCTAAAAAGCACCGCTAATGCTC
Found at i:80136186 original size:40 final size:39
Alignment explanation
Indices: 80136117--80136227 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 39
80136107 AAAAAGCACC
* * * * *
80136117 GCTAGTGCTCGATCTATAGCAGCGTTTTTTAAAAA-GCGT
1 GCTAATGCTCAATCTATAGCGGTGCTTTTTAAAAACGC-T
* *
80136156 CGCTAATGTTCAATCTATAGCGTTGCTTTTTGAAAAACGCT
1 -GCTAATGCTCAATCTATAGCGGTGCTTTTT-AAAAACGCT
* * *
80136197 GCTAATGCTCGATCTGTAGCGGTGTTTTTTA
1 GCTAATGCTCAATCTATAGCGGTGCTTTTTA
80136228 TCCAAATGCC
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
39 1 0.02
40 48 0.84
41 6 0.11
42 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (39 bp):
GCTAATGCTCAATCTATAGCGGTGCTTTTTAAAAACGCT
Found at i:80142992 original size:42 final size:42
Alignment explanation
Indices: 80142881--80143087 Score: 261
Period size: 43 Copynumber: 4.9 Consensus size: 42
80142871 CACCTTACCA
*** *
80142881 ATGCCATATCCCAGATATGGTCTTACATGGGGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
80142923 ATGCCAATAGCCCAGCTATGGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *** *
80142966 ATGCCATATCCCAGATATGATCTTACATGGGGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
80143008 ATGCCAATAGCCCAGCTATGGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
80143051 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
80143088 AATAACCCTT
Statistics
Matches: 139, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
42 68 0.49
43 71 0.51
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:80143087 original size:85 final size:85
Alignment explanation
Indices: 80142881--80143077 Score: 385
Period size: 85 Copynumber: 2.3 Consensus size: 85
80142871 CACCTTACCA
80142881 ATGCCATATCCCAGATATGGTCTTACATGGGGTCTCATATTGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACATGGGGTCTCATATTGATGCCAATAGCCCAGCTATGGTC
80142946 TTACATGAAATCTCATATCG
66 TTACATGAAATCTCATATCG
*
80142966 ATGCCATATCCCAGATATGATCTTACATGGGGTCTCATATTGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACATGGGGTCTCATATTGATGCCAATAGCCCAGCTATGGTC
80143031 TTACATGAAATCTCATATCG
66 TTACATGAAATCTCATATCG
80143051 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
80143078 CGTAATCTCA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 110 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACATGGGGTCTCATATTGATGCCAATAGCCCAGCTATGGTC
TTACATGAAATCTCATATCG
Found at i:80150943 original size:27 final size:26
Alignment explanation
Indices: 80150899--80150950 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80150889 CTCGCTGCAA
*
80150899 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80150926 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80150951 GCAGCATCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80150998 original size:2 final size:2
Alignment explanation
Indices: 80150993--80151020 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80150983 ACACACACAC
80150993 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80151021 CTGTTCTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80166120 original size:40 final size:40
Alignment explanation
Indices: 80166044--80166306 Score: 386
Period size: 40 Copynumber: 6.6 Consensus size: 40
80166034 AACCCAAGTA
* * *
80166044 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
80166083 CCTTCGGGTCTTAGCCTGGATATAGTCACTAGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80166123 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
80166163 CCTTCAGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80166203 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80166243 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAAATG
* *
80166284 CCTTCGGGTCTTTGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80166307 CATCCGAATA
Statistics
Matches: 203, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.05
40 165 0.81
41 27 0.13
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80168076 original size:40 final size:40
Alignment explanation
Indices: 80167899--80168118 Score: 333
Period size: 39 Copynumber: 5.6 Consensus size: 40
80167889 AACCCAAGTA
* *
80167899 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
80167938 CCTT-GGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80167977 CCTTCAGGACTTAG-CCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80168016 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80168055 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAAATG
*
80168096 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80168119 CATCCGAATA
Statistics
Matches: 168, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
38 15 0.09
39 90 0.54
40 36 0.21
41 27 0.16
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80176195 original size:40 final size:40
Alignment explanation
Indices: 80176121--80176343 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
80176111 AACCCAAGTA
* *
80176121 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
80176160 CCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
80176200 CCTTCAGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80176240 CCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80176280 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAAATG
* *
80176321 CCTTCGGGTCTTTGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80176344 CATCCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.07
40 128 0.77
41 27 0.16
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80178821 original size:30 final size:33
Alignment explanation
Indices: 80178790--80178860 Score: 88
Period size: 38 Copynumber: 2.0 Consensus size: 33
80178780 GTGCGAATTG
80178790 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATA-CCGGGCTAAGCCCGAAGGCAATTGT----GC-A
80178829 TGATACCGGGCTAAGCCCGAAGGCAATTGTGC
1 TGATACCGGGCTAAGCCCGAAGGCAATTGTGC
80178861 GAGTTGTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
34 2 0.06
38 25 0.78
39 5 0.16
ACGTcount: A:0.25, C:0.24, G:0.31, T:0.20
Consensus pattern (33 bp):
TGATACCGGGCTAAGCCCGAAGGCAATTGTGCA
Found at i:80178847 original size:38 final size:38
Alignment explanation
Indices: 80178751--80178900 Score: 228
Period size: 39 Copynumber: 3.9 Consensus size: 38
80178741 GAATGTTCGA
*
80178751 GTGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
80178789 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
80178828 ATGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
80178866 GTGATATCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATACCGGGCTAAG-CCCGAAGGCAATTGTGCG
80178901 GGTTACCATA
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 50 0.49
39 52 0.51
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.23
Consensus pattern (38 bp):
GTGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:80178847 original size:77 final size:77
Alignment explanation
Indices: 80178752--80178900 Score: 255
Period size: 77 Copynumber: 1.9 Consensus size: 77
80178742 AATGTTCGAG
80178752 TGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 TGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATAT-CGGGCTAAGTCCCGAAGGCA
80178816 ATTGTGCGAGCTA
65 ATTGTGCGAGCTA
* * *
80178829 TGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCGGGTTAAGTCCCGAAGGCAT
1 TGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCGGGCTAAGTCCCGAAGGCAA
80178894 TTGTGCG
66 TTGTGCG
80178901 GGTTACCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
76 8 0.12
77 60 0.88
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (77 bp):
TGATACCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGCTA
Found at i:80194999 original size:40 final size:39
Alignment explanation
Indices: 80194962--80195183 Score: 202
Period size: 39 Copynumber: 5.6 Consensus size: 39
80194952 GCTACTCGTT
*
80194962 CAAATGCCTTCGGGACGTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCGCA
* * *
80195002 CGAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCC-G-TTATAGTAACTCGCA
* **
80195042 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGTTA-TAGTAACTCGCA
* * **
80195081 CAAATGCCTTCGGG-CTTATCCTGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGTTA-TAGTAACTCGCA
* * * *
80195120 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGTTATAGTAAC-TCGCA
80195161 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
80195184 GACATCATTC
Statistics
Matches: 154, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
38 3 0.02
39 68 0.44
40 66 0.43
41 17 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGCA
Found at i:80195062 original size:79 final size:77
Alignment explanation
Indices: 80194962--80195185 Score: 236
Period size: 79 Copynumber: 2.8 Consensus size: 77
80194952 GCTACTCGTT
* *
80194962 CAAATGCCTTCGGGACGTAGCCCAGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCC-GATATAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
* *
80195027 ATTTAGTAACTCGCG
63 AATTAGTAACTCGCA
* * *
80195042 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-CTTATCCTGG
1 CAAATGCCTTCGGGCTTAGCCC-GATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
80195105 AATTAGTAACTCGCA
63 AATTAGTAACTCGCA
* * * * * *
80195120 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAG-CCCGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
80195185 A
63 A
80195186 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 34 0.28
79 57 0.47
80 30 0.25
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGATATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAAT
TAGTAACTCGCA
Found at i:80195076 original size:39 final size:40
Alignment explanation
Indices: 80194962--80195185 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
80194952 GCTACTCGTT
* * *
80194962 CAAATGCCTTCGGGACGTAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
80195002 CGAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
80195042 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
80195081 CAAATGCCTTCGGG-CTTATCCTGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
80195120 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
80195161 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80195186 CATCATTCGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.45
40 73 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:80204259 original size:28 final size:26
Alignment explanation
Indices: 80204228--80204291 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
80204218 AATTACTTGA
* *
80204228 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
80204256 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
80204282 ATACCCCTAG
1 ATACCCCTAG
80204292 GGTTGCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 1 0.03
28 9 0.27
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:80204438 original size:27 final size:26
Alignment explanation
Indices: 80204396--80204507 Score: 100
Period size: 27 Copynumber: 4.2 Consensus size: 26
80204386 AGGAAGCGTC
* *
80204396 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTACCAC-ATTATCTGAT
80204423 CTGGTGGCTCTACCACATATATCT-ATT
1 CTGGTGGCTCTACCACAT-TATCTGA-T
* *
80204450 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTACCAC-ATTATCT-GAT
* * * *
80204478 TTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGAT
80204504 CTGG
1 CTGG
80204508 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 15 0.21
29 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGAT
Found at i:80204500 original size:54 final size:54
Alignment explanation
Indices: 80204396--80204507 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
80204386 AGGAAGCGTC
*
80204396 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
* * * * * *
80204450 CTGGTGGCTCTGCCACGATTATCTATATTTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTACCACATATATCTATT
80204504 CTGG
1 CTGG
80204508 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
Found at i:80209510 original size:41 final size:41
Alignment explanation
Indices: 80209453--80209975 Score: 681
Period size: 41 Copynumber: 12.3 Consensus size: 41
80209443 TATTCGGGCT
* * *
80209453 TTATTACCTACCAGGCTTTGTGCCAGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80209494 TTATTGCCTAGTAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
80209535 TTATTGCCTAGCAGGCTTTGTGCCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
80209576 TTATTGCCTAGCAGGCTTTGTGCCGATGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80209617 TTATTGCCTAGCAGGCTTTGTAGCAGGCTTTGTGCCGGTATATTATATCAGGC
1 TTA-T---T-GC---C----TAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
80209670 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80209711 TTATTGCCTAGCAGGCTTTATGTGCCGGTGTATTATATTAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
80209754 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80209795 TTATTGCCTAGTAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80209836 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
*
80209879 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* * * *
80209922 TTATTTCCTAGTAGGCTCTGTACCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
80209963 TCTA-TGCCTAGCA
1 T-TATTGCCTAGCA
80209976 AATTTTATGT
Statistics
Matches: 435, Mismatches: 29, Indels: 36
0.87 0.06 0.07
Matches are distributed among these distances:
40 1 0.00
41 266 0.61
42 9 0.02
43 117 0.27
45 2 0.00
46 2 0.00
48 2 0.00
49 2 0.00
52 1 0.00
53 33 0.08
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:80209592 original size:82 final size:82
Alignment explanation
Indices: 80209453--80209975 Score: 681
Period size: 84 Copynumber: 6.2 Consensus size: 82
80209443 TATTCGGGCT
* * * *
80209453 TTATTACCTACCAGGCTTTGTGCCAGTGTATTATATCAGGCTTATTGCCTAGTAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
80209518 GGTGTATTATATCAGGC
66 GGTGTATTATATCAGGC
* *
80209535 TTATTGCCTAGCAGGCTTTGTGCCGGTGTTTTAAATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
* *
80209600 GATGTATTAAATCAGGC
66 GGTGTATTATATCAGGC
*
80209617 TTATTGCCTAGCAGGCTTTGTAGCAGGCTTTGTGCCGGTATATTATATCAGGCTTATTGCCTAGC
1 TTA-T---T-GC---C----TAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGC
80209682 AGGCTTTGTGCCGGTGTATTATATCAGGC
54 AGGCTTTGTGCCGGTGTATTATATCAGGC
* *
80209711 TTATTGCCTAGCAGGCTTTATGTGCCGGTGTATTATATTAGGCTTATTGCCTAGCAGGCTCTGTG
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTG
*
80209776 CCGGTGTATTAAATCAGGC
64 CCGGTGTATTATATCAGGC
* *
80209795 TTATTGCCTAGTAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGC-TT-TGTG
80209860 CCGGTGTATTATATCAGGC
64 CCGGTGTATTATATCAGGC
* * * * *
80209879 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTTCCTAGTAGGCTCTGTA
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTG
80209944 CCGGTGTATTATA-CTAGGC
64 CCGGTGTATTATATC-AGGC
80209963 TCTA-TGCCTAGCA
1 T-TATTGCCTAGCA
80209976 AATTTTATGT
Statistics
Matches: 392, Mismatches: 29, Indels: 38
0.85 0.06 0.08
Matches are distributed among these distances:
82 123 0.31
83 7 0.02
84 140 0.36
85 5 0.01
86 38 0.10
87 2 0.01
89 2 0.01
90 2 0.01
93 1 0.00
94 72 0.18
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (82 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
GGTGTATTATATCAGGC
Found at i:80209642 original size:12 final size:12
Alignment explanation
Indices: 80209625--80209649 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80209615 GCTTATTGCC
80209625 TAGCAGGCTTTG
1 TAGCAGGCTTTG
80209637 TAGCAGGCTTTG
1 TAGCAGGCTTTG
80209649 T
1 T
80209650 GCCGGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36
Consensus pattern (12 bp):
TAGCAGGCTTTG
Found at i:80209661 original size:53 final size:53
Alignment explanation
Indices: 80209584--80209690 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
80209574 GCTTATTGCC
*
80209584 TAGCAGGCTTTGTGCCGATGTATTAAATCAGGCTTATTGCCTAGCAGGCTTTG
1 TAGCAGGCTTTGTGCCGATATATTAAATCAGGCTTATTGCCTAGCAGGCTTTG
* *
80209637 TAGCAGGCTTTGTGCCGGTATATTATATCAGGCTTATTGCCTAGCAGGCTTTG
1 TAGCAGGCTTTGTGCCGATATATTAAATCAGGCTTATTGCCTAGCAGGCTTTG
80209690 T
1 T
80209691 GCCGGTGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (53 bp):
TAGCAGGCTTTGTGCCGATATATTAAATCAGGCTTATTGCCTAGCAGGCTTTG
Found at i:80209862 original size:125 final size:125
Alignment explanation
Indices: 80209637--80209975 Score: 529
Period size: 125 Copynumber: 2.7 Consensus size: 125
80209627 GCAGGCTTTG
* * *
80209637 TAGCAGGCTTTGTGCCGGTATATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATT
1 TAGCAGGCTATGTGCCGGTGTATTATATCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTATT
* *
80209702 ATATCAGGCTTATTGCCTAGCAGGCTTTATGTGCCGGTGTATTATATTAGGCTTATTGCC
66 ATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCC
* *
80209762 TAGCAGGCTCTGTGCCGGTGTATTAAATCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTATT
1 TAGCAGGCTATGTGCCGGTGTATTATATCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTATT
80209827 ATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCC
66 ATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCC
* * * *
80209887 TAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTTCCTAGTAGGCTCTGTACCGGTGTA
1 TAGCAGGC--TATGTGCCGGTGTATTATATCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTA
80209952 TTATA-CTAGGCTCTA-TGCCTAGCA
64 TTATATC-AGGCT-TATTGCCTAGCA
80209976 AATTTTATGT
Statistics
Matches: 198, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
125 127 0.64
126 1 0.01
127 68 0.34
128 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (125 bp):
TAGCAGGCTATGTGCCGGTGTATTATATCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTATT
ATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCC
Found at i:80215938 original size:34 final size:34
Alignment explanation
Indices: 80215900--80215968 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
80215890 TGTATTAAAG
80215900 ACTAAATTTAGAAATTTGTAAATTGGGGGGTCAA
1 ACTAAATTTAGAAATTTGTAAATTGGGGGGTCAA
80215934 ACTAAATTTAGAAATTTGTAAATTGGGGGGTCAA
1 ACTAAATTTAGAAATTTGTAAATTGGGGGGTCAA
80215968 A
1 A
80215969 ACGTGAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (34 bp):
ACTAAATTTAGAAATTTGTAAATTGGGGGGTCAA
Found at i:80216564 original size:41 final size:41
Alignment explanation
Indices: 80216518--80217024 Score: 784
Period size: 41 Copynumber: 12.3 Consensus size: 41
80216508 TATTCGGGCT
80216518 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
**
80216559 TTATTGCCTAGCAGGCTTTGTGGTGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * * * *
80216600 TTATTGCCTAGCAGGCTTTGTGTCGATGTTTTAAATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
80216641 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80216682 TTACTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
80216723 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
**
80216764 TTATTGCCTAGCAGGCTTTGTTTCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
80216805 TTATTGCCTAGCAGGCTTTGTGCCGGTGTTTTAAATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80216846 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80216887 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
80216928 TTATTGCCTAGCAGGCTTTATGTGCCGGTGTATTTTATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
80216971 TTATTGCCTAGCAGGCTCTGTGCCGGTATATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
80217012 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
80217025 AATTTTATGT
Statistics
Matches: 431, Mismatches: 31, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
40 2 0.00
41 389 0.90
42 3 0.01
43 37 0.09
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:80219961 original size:29 final size:29
Alignment explanation
Indices: 80219922--80220000 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
80219912 CTTAATAATC
*
80219922 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80219952 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
80219981 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80220001 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80220658 original size:2 final size:2
Alignment explanation
Indices: 80220640--80220675 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
80220630 TGATGGCCGA
* *
80220640 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80220676 CAACTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80227840 original size:29 final size:29
Alignment explanation
Indices: 80227801--80227879 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
80227791 CTTAATAATC
*
80227801 AACTACGCACACTTAGTGCCATGTACTTT-A
1 AACT-CGCACACTTAGTGCCATGCA-TTTCA
*
80227831 AACTCGCACACTTAGTGCCTTGCATTTCA
1 AACTCGCACACTTAGTGCCATGCATTTCA
* *
80227860 AGCCCGCACACTTAGTGCCA
1 AACTCGCACACTTAGTGCCA
80227880 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.84
30 4 0.09
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
AACTCGCACACTTAGTGCCATGCATTTCA
Found at i:80232016 original size:93 final size:93
Alignment explanation
Indices: 80231857--80232029 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
80231847 CGCCCATAAG
* * * *
80231857 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGTATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
80231922 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
80231950 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
80232015 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
80232030 CAAATATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80232025 original size:46 final size:46
Alignment explanation
Indices: 80231850--80232025 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
80231840 AGTAACCCGC
* * *
80231850 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
80231896 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
80231946 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
80231989 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80232026 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:80236834 original size:28 final size:26
Alignment explanation
Indices: 80236803--80236866 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
80236793 AATTACTTGA
* *
80236803 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
80236831 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
80236857 ATACCCCTAG
1 ATACCCCTAG
80236867 GGTTGCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 1 0.03
28 9 0.27
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:80237020 original size:27 final size:26
Alignment explanation
Indices: 80236988--80237076 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 26
80236978 CTACGCCGCA
80236988 ATTATCTGATCTGGTGGCTCTGCCAC
1 ATTATCTGATCTGGTGGCTCTGCCAC
*
80237014 ATATATCTGTTCTGGTGGCTCTGCCAC
1 AT-TATCTGATCTGGTGGCTCTGCCAC
* *
80237041 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTG-ATCTGGTGGCTCTGCCAC
80237069 ATTATCTG
1 ATTATCTG
80237077 TTTTGGCAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.04
27 37 0.66
28 17 0.30
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTATCTGATCTGGTGGCTCTGCCAC
Found at i:80238792 original size:29 final size:29
Alignment explanation
Indices: 80238758--80238889 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
80238748 TACTCGATTT
* * *
80238758 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
80238787 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
80238816 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
80238845 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
80238874 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80238890 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:80238850 original size:58 final size:59
Alignment explanation
Indices: 80238757--80238889 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
80238747 ATACTCGATT
* * * *
80238757 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
80238815 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
80238874 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
80238890 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:80248872 original size:46 final size:45
Alignment explanation
Indices: 80248732--80248942 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 45
80248722 ATATATGTGT
* *
80248732 CGATGCCATGTCCCAAACATGGTCTTACACTG-ACACATCTC-ATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGCACTCATCTCAAT-GC
* * * *
80248778 CGATACATGTCCCAGACATGTCTTACACTG-ACTTAAGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGCAC-TCA-TCTCAATGC
*
80248824 CGATGCATGACCCAGACATGTCTTACACTAGCACTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACT-GCACTCATCTCAATGC
* * * *
80248870 CGATGCCATGTTCCGGACATGGTCTTACACTG-GCTC-TCATAATATGTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGCACTCATC-TCA-ATG-C
80248918 CGATGCATGTCCCAGACATGTCTTA
1 CGATGCATGTCCCAGACATGTCTTA
80248943 TACTAGCTCA
Statistics
Matches: 138, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 13 0.09
45 16 0.12
46 60 0.43
47 31 0.22
48 18 0.13
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGCACTCATCTCAATGC
Found at i:80251844 original size:11 final size:11
Alignment explanation
Indices: 80251828--80251856 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
80251818 AATTTTTTAA
80251828 ACGAAATTTTC
1 ACGAAATTTTC
80251839 ACGAAATTTTC
1 ACGAAATTTTC
80251850 ACGAAAT
1 ACGAAAT
80251857 CATTTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (11 bp):
ACGAAATTTTC
Found at i:80252934 original size:36 final size:37
Alignment explanation
Indices: 80252849--80252953 Score: 176
Period size: 36 Copynumber: 2.9 Consensus size: 37
80252839 AGCTCAGACG
* *
80252849 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80252886 AAATCTCCACACGTAGTCATCGGGTCTTACCC-GACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
80252922 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
80252954 AGAATATATT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 35 0.54
37 30 0.46
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80253159 original size:48 final size:49
Alignment explanation
Indices: 80253105--80253237 Score: 207
Period size: 48 Copynumber: 2.7 Consensus size: 49
80253095 CATCGCCTAC
*
80253105 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTC-ATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCAATAT
*
80253153 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCA-ATAT
*
80253203 ATATTTCACATTGACCATTCGGCTTTGCCACATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATAT
80253238 GCATGTTCAT
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
48 40 0.51
49 1 0.01
50 38 0.48
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (49 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCAATAT
Found at i:80253224 original size:50 final size:50
Alignment explanation
Indices: 80253105--80253249 Score: 217
Period size: 50 Copynumber: 3.0 Consensus size: 50
80253095 CATCGCCTAC
* *
80253105 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTC--ATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
80253153 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
80253203 ATATTTCACATTGACCATTCGGCTTTGCCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
80253250 TCACCACATT
Statistics
Matches: 90, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
48 40 0.44
49 7 0.08
50 43 0.48
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:80253299 original size:47 final size:47
Alignment explanation
Indices: 80253208--80253492 Score: 452
Period size: 47 Copynumber: 6.1 Consensus size: 47
80253198 TATATATATT
* * * *
80253208 TCACATTGACCATTCGG-CTT-TGC-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTAT-CACATATATGCATGCTCACATTCA
* *
80253253 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
80253300 TCACATTGCCCATTC-GCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
80253346 TCACATTGGCCATTCGGCTTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
80253393 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
80253440 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
80253487 TCACAT
1 TCACAT
80253493 AAAATCCTAA
Statistics
Matches: 225, Mismatches: 11, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 15 0.07
46 48 0.21
47 162 0.72
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:80253406 original size:140 final size:139
Alignment explanation
Indices: 80253208--80253492 Score: 464
Period size: 140 Copynumber: 2.0 Consensus size: 139
80253198 TATATATATT
* *
80253208 TCACATTGACCATTCGGCTTTGCCACATATGCATGTTCATATTCACCACATTGGCCATTCGGCCT
1 TCACATTGACCATTCGGCTTTGCCACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCT
80253273 TATCACACATATGCATGCTCACATTCATCACATTGCCCATTC-GCCTTATCACATATATGCATGC
66 TATCACACATATGCATGCTCACATTCATCACATTGCCCATTCGGCCTTATCACATATATGCATGC
80253337 TCACATTCA
131 TCACATTCA
* * * *
80253346 TCACATTGGCCATTCGGCTTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGACCATTCGGCTTT-GC-CACATATGCATGCTCACATTCACCACATTGGCCATTCGGC
* *
80253411 CTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
64 CTTATCACACATATGCATGCTCACATTCATCACATTGCCCATTCGGCCTTATCACATATATGCAT
*
80253476 GTTCACATTCA
129 GCTCACATTCA
80253487 TCACAT
1 TCACAT
80253493 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
138 20 0.15
139 1 0.01
140 78 0.58
141 36 0.27
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (139 bp):
TCACATTGACCATTCGGCTTTGCCACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCT
TATCACACATATGCATGCTCACATTCATCACATTGCCCATTCGGCCTTATCACATATATGCATGC
TCACATTCA
Found at i:80253420 original size:22 final size:22
Alignment explanation
Indices: 80253392--80253467 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
80253382 GCTCACATTC
80253392 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
80253414 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
80253438 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80253461 ATCACAT
1 ATCACAT
80253468 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80268550 original size:13 final size:13
Alignment explanation
Indices: 80268532--80268573 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
80268522 AAAGTAGTTT
80268532 TAAAAAGATAAAAG
1 TAAAAA-ATAAAAG
80268546 TAAAAACATAAAAG
1 TAAAAA-ATAAAAG
*
80268560 TAATAAATAAAAG
1 TAAAAAATAAAAG
80268573 T
1 T
80268574 CTTTAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (13 bp):
TAAAAAATAAAAG
Found at i:80272345 original size:37 final size:37
Alignment explanation
Indices: 80272295--80272367 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
80272285 CGAGCTGTCT
*
80272295 TATCTGAGTTTCAAGCCCTTGGATCGATGCTTGTTAC
1 TATCTGAGTTTCAAGCCCTCGGATCGATGCTTGTTAC
80272332 TATCTGAGTTTCAAGCCCTCGGATCGATGCTTGTTA
1 TATCTGAGTTTCAAGCCCTCGGATCGATGCTTGTTA
80272368 TTCTTAAGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (37 bp):
TATCTGAGTTTCAAGCCCTCGGATCGATGCTTGTTAC
Found at i:80276679 original size:25 final size:25
Alignment explanation
Indices: 80276631--80276688 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
80276621 CATTAGGGAT
*
80276631 TACCGATTCT-CAGCTCGTATGAGCT
1 TACCGATT-TACAGCTCGTATGAGCA
*
80276656 TATCGATTTACAGCTCGTGA-GAGCA
1 TACCGATTTACAGCTCGT-ATGAGCA
80276681 TACCGATT
1 TACCGATT
80276689 CATGGCTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (25 bp):
TACCGATTTACAGCTCGTATGAGCA
Found at i:80279108 original size:43 final size:43
Alignment explanation
Indices: 80279000--80279122 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 43
80278990 GACATTAAAT
*
80279000 TATAGATATGTGATTACAAGTAAGACCATGTCTGGGACATTGG
1 TATAGATATGTGATTACATGTAAGACCATGTCTGGGACATTGG
* * * * *
80279043 CATTG-TATTGAGATTACGTGTAAGACGATGTCTGGGACATTGG
1 TATAGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGG
* **
80279086 TATAGATATGTGATAACATGTAAGACCAAATCTGGGA
1 TATAGATATGTGATTACATGTAAGACCATGTCTGGGA
80279123 TATAGCATTG
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 2 0.03
43 60 0.94
44 2 0.03
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (43 bp):
TATAGATATGTGATTACATGTAAGACCATGTCTGGGACATTGG
Found at i:80280533 original size:16 final size:16
Alignment explanation
Indices: 80280514--80280552 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
80280504 GAAATACCGG
80280514 AAAGCCAAAATG-CTGA
1 AAAGCCAAAATGTC-GA
*
80280530 AAAGCCGAAATGTCGA
1 AAAGCCAAAATGTCGA
80280546 AAAGCCA
1 AAAGCCA
80280553 GAAGTTTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (16 bp):
AAAGCCAAAATGTCGA
Found at i:80280813 original size:28 final size:29
Alignment explanation
Indices: 80280771--80280857 Score: 124
Period size: 28 Copynumber: 3.1 Consensus size: 29
80280761 CATGACTGTA
80280771 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
* * * *
80280799 AATGTGATTTAGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATAGGCCATATG
80280828 AATGTGA-TTGGGCCTAATAGGCCATATG
1 AATGTGATTTGGGCCTAATAGGCCATATG
80280856 AA
1 AA
80280858 AGAGATTGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 37 0.73
29 14 0.27
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATAGGCCATATG
Found at i:80280864 original size:28 final size:27
Alignment explanation
Indices: 80280774--80280882 Score: 103
Period size: 28 Copynumber: 3.9 Consensus size: 27
80280764 GACTGTAAAT
*
80280774 GTGATTTGGGCCTAATGGCCATATGAAT
1 GTGA-TTGGGCCTAATGGCCATATGAAA
* *
80280802 GTGATTTAGGCCTAATGGGCCACAT-AAA
1 GTGA-TTGGGCCTAAT-GGCCATATGAAA
80280830 TGTGATTGGGCCTAATAGGCCATATGAAA
1 -GTGATTGGGCCTAAT-GGCCATATGAAA
* * *
80280859 GAGATTGGGCTTAGTGGCTCATAT
1 GTGATTGGGCCTAATGGC-CATAT
80280883 ACAGGTACGT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.04
28 51 0.75
29 14 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
GTGATTGGGCCTAATGGCCATATGAAA
Found at i:80282439 original size:70 final size:71
Alignment explanation
Indices: 80282288--80282450 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
80282278 GAGATGTATC
80282288 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80282353 AGGACA
66 AGGACA
80282359 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
80282423 CGGACA
66 AGGACA
80282429 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80282451 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80289554 original size:71 final size:71
Alignment explanation
Indices: 80289466--80289629 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
80289456 GAGATGTATC
80289466 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80289531 AGGACA
66 AGGACA
*
80289537 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
80289602 CGGACA
66 AGGACA
80289608 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80289630 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80298396 original size:17 final size:19
Alignment explanation
Indices: 80298354--80298397 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80298344 ATGAAATTTT
* *
80298354 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
80298373 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
80298391 AA-TATTA
1 AATTATTA
80298398 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:80302669 original size:17 final size:19
Alignment explanation
Indices: 80302627--80302670 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80302617 ATGAAATTTT
* *
80302627 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
80302646 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
80302664 AA-TATTA
1 AATTATTA
80302671 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:80306297 original size:91 final size:94
Alignment explanation
Indices: 80306133--80306358 Score: 241
Period size: 91 Copynumber: 2.4 Consensus size: 94
80306123 GGACATATTG
* * * * **
80306133 CCGATGCCATGTCTCAGACATGGTCTTACACTGAC--TCTCATATACGCGTGCTGATGCATGTCC
1 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTC-TAT-CGAG-GCCCATGCATGTCC
*
80306196 CAAACATGTCTTACACTAGCA-CAACTCT-TA
63 CAAACATGTCTGACACTAGCACCAACTCTATA
* *
80306226 GCCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCTCTATCGAGGCCCATGCATGTCCCA
1 -CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTCTATCGAGGCCCATGCATGTCCCA
* *
80306289 GAAC-TGTCTGACACTGGCACTCATCTCTATA
65 -AACATGTCTGACACTAGCAC-CAACTCTATA
*
80306320 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC
1 CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATC
80306359 ATAGTATGGC
Statistics
Matches: 110, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
91 27 0.25
92 18 0.16
93 25 0.23
94 23 0.21
95 17 0.15
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATCGTCTTACACTGGCTATCTCTATCGAGGCCCATGCATGTCCCAA
ACATGTCTGACACTAGCACCAACTCTATA
Found at i:80306378 original size:47 final size:46
Alignment explanation
Indices: 80306132--80306490 Score: 183
Period size: 47 Copynumber: 7.7 Consensus size: 46
80306122 GGGACATATT
* * * *
80306132 GCCGATGCCATGTCTCAGACATGGTCTTACACTGACTCTCATA-TACGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATACTA--TG
* * * * *
80306181 TGCTGATGCATGTCCCAAACATGTCTTACACTAGC-A-CA-ACTCTTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACT-ATG
* * *
80306226 GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATC-T-CTATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTAT---G
* * *
80306273 GCCCATGCATGTCCCAGA-ACTGTCTGACACTGGC-ACTCATCTCTAT-
1 GCCGATGCATGTCCCAGACA-TGTCTTACACTGGCTA-TCAT-ACTATG
* *
80306319 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATACTATG
* ** * * *
80306367 GCTGATGCATGTCTTAAACATGTCTTACACTAGCCT-TCGT-CTGGAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGCTATCATACT--ATG
* * *
80306413 GCCGATGCCATGACCCAGACATGGTCTTACAGTGGCTCTC--A-TA-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATACTATG
* *
80306457 GCCAAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
80306491 GCACAAATCA
Statistics
Matches: 237, Mismatches: 46, Indels: 60
0.69 0.13 0.17
Matches are distributed among these distances:
42 12 0.05
43 13 0.05
44 35 0.15
45 5 0.02
46 31 0.13
47 73 0.31
48 45 0.19
49 13 0.05
50 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTATG
Found at i:80306379 original size:94 final size:94
Alignment explanation
Indices: 80306133--80306456 Score: 299
Period size: 94 Copynumber: 3.5 Consensus size: 94
80306123 GGACATATTG
* * * *
80306133 CCGATGCCATGTCTCAGACATGGTCTTACACTGACTCTCATA-TACGCGTGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTCCC
*
80306197 AAACATGTCTTACACTAGCA--CAACTCT-TA
63 AAACATGTCTTACACTAGCACTCATCTCTATA
* * * * **
80306226 GCCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATC-T-CTATCGAGGCCCATGCATGTCC
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAT---GGCTGATGCATGTCC
* *
80306287 CAGAAC-TGTCTGACACTGGCACTCATCTCTATA
62 CA-AACATGTCTTACACTAGCACTCATCTCTATA
**
80306320 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCTTAAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAAA
* ** *
80306385 CATGTCTTACACTAGC-CTTCGTCTGGATG
66 CATGTCTTACACTAGCAC-TCATCTCTATA
* * *
80306414 CCGATGCCATGACCCAGACATGGTCTTACAGTGGCTCTCATAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAG
80306457 GCCAAAGCAT
Statistics
Matches: 187, Mismatches: 29, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
91 30 0.16
92 19 0.10
93 26 0.14
94 91 0.49
95 17 0.09
96 1 0.01
97 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAAA
CATGTCTTACACTAGCACTCATCTCTATA
Found at i:80315117 original size:21 final size:21
Alignment explanation
Indices: 80315093--80315134 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
80315083 GATTGGGCTA
* *
80315093 GCTCTTTTGATGACAGAAGGT
1 GCTCTCTTGATGACAAAAGGT
80315114 GCTCTCTTGATGACAAAAGGT
1 GCTCTCTTGATGACAAAAGGT
80315135 CTACAATGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (21 bp):
GCTCTCTTGATGACAAAAGGT
Found at i:80325676 original size:27 final size:26
Alignment explanation
Indices: 80325645--80325829 Score: 133
Period size: 27 Copynumber: 6.9 Consensus size: 26
80325635 TGTATGACCG
80325645 AAATACCCTCATAGGGTAAAATGACAT
1 AAATACCCTCATAGGGTAAAATGAC-T
* *
80325672 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGA-CT
* *
80325699 AAATACCGCT-ATAAGGTAAAATAACT
1 AAATACC-CTCATAGGGTAAAATGACT
* *
80325725 GAAATACCCTCATAGGGTAAAATAACCG
1 -AAATACCCTCATAGGGTAAAATGA-CT
* * * *
80325753 AAATACCC-CTTTAAGGTAAAGTGCCT
1 AAATACCCTC-ATAGGGTAAAATGACT
* * *
80325779 AAAATACCCTTATACGATAAAATGACT
1 -AAATACCCTCATAGGGTAAAATGACT
* *
80325806 GTAATACCC-CTATAAGGTAAAATG
1 -AAATACCCTC-ATAGGGTAAAATG
80325830 TTGATTTGCC
Statistics
Matches: 124, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
26 5 0.04
27 116 0.94
28 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (26 bp):
AAATACCCTCATAGGGTAAAATGACT
Found at i:80325730 original size:54 final size:53
Alignment explanation
Indices: 80325638--80325829 Score: 215
Period size: 54 Copynumber: 3.6 Consensus size: 53
80325628 TGGGCCATGT
* *
80325638 ATGACCGAAATA-CCCTCATAGGGTAAAATGACATAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCT-ATAAGGTAAAATGAC-TAAATACCCTCATAGGGTAAA
* * *
80325692 ATGATCGAAATACCGCTATAAGGTAAAATAACTGAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCCCTATAAGGTAAAATGACT-AAATACCCTCATAGGGTAAA
* * * * * * *
80325746 ATAACCGAAATACCCCTTTAAGGTAAAGTGCCTAAAATACCCTTATACGATAAA
1 ATGACCGAAATACCCCTATAAGGTAAAATGACT-AAATACCCTCATAGGGTAAA
* *
80325800 ATGACTGTAATACCCCTATAAGGTAAAATG
1 ATGACCGAAATACCCCTATAAGGTAAAATG
80325830 TTGATTTGCC
Statistics
Matches: 115, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 111 0.97
55 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (53 bp):
ATGACCGAAATACCCCTATAAGGTAAAATGACTAAATACCCTCATAGGGTAAA
Found at i:80325784 original size:81 final size:81
Alignment explanation
Indices: 80325644--80325828 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 81
80325634 ATGTATGACC
* * * *
80325644 GAAATACCCTCATAGGGTAAAATGACATAAATACCCCCATAGGGTAAAATGATCGAAATACCGC-
1 GAAATACCCTCATAGGGTAAAATAACAGAAATACCCCCATAAGGTAAAATGATCAAAATACC-CT
*
80325708 TATAAGGTAAAATAACT
65 TATAAGATAAAATAACT
* ** * *
80325725 GAAATACCCTCATAGGGTAAAATAACCGAAATACCCCTTTAAGGTAAAGTG-CCTAAAATACCCT
1 GAAATACCCTCATAGGGTAAAATAACAGAAATACCCCCATAAGGTAAAATGATC-AAAATACCCT
* *
80325789 TATACGATAAAATGACT
65 TATAAGATAAAATAACT
* *
80325806 GTAATACCC-CTATAAGGTAAAAT
1 GAAATACCCTC-ATAGGGTAAAAT
80325829 GTTGATTTGC
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 3 0.03
81 84 0.97
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (81 bp):
GAAATACCCTCATAGGGTAAAATAACAGAAATACCCCCATAAGGTAAAATGATCAAAATACCCTT
ATAAGATAAAATAACT
Found at i:80329115 original size:8 final size:8
Alignment explanation
Indices: 80329102--80329129 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
80329092 CTTGATTAGC
80329102 CATGAAAT
1 CATGAAAT
80329110 CATGAAAT
1 CATGAAAT
80329118 CATGAAAT
1 CATGAAAT
80329126 CATG
1 CATG
80329130 CCATAGACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (8 bp):
CATGAAAT
Found at i:80336117 original size:24 final size:24
Alignment explanation
Indices: 80336082--80336134 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
80336072 CCAACACTAT
80336082 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
*
80336106 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
80336130 TCTCC
1 TCTCC
80336135 TGACAGCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:80345380 original size:29 final size:29
Alignment explanation
Indices: 80345347--80345478 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
80345337 GTGACGAGAT
80345347 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
80345376 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
80345405 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
80345434 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
80345463 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
80345479 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:80353433 original size:29 final size:29
Alignment explanation
Indices: 80353400--80353531 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
80353390 GTGACGAGAT
80353400 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
80353429 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
80353458 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
80353487 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
80353516 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
80353532 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:80355433 original size:24 final size:26
Alignment explanation
Indices: 80355390--80355439 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
80355380 CATTTATTAT
*
80355390 AACATACTTATGAAAGAAATGATTGA
1 AACATACTTATGAAAAAAATGATTGA
*
80355416 AACATAC-T-TGAAAAAAATGTTTGA
1 AACATACTTATGAAAAAAATGATTGA
80355440 GCAATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
25 1 0.05
26 7 0.32
ACGTcount: A:0.50, C:0.08, G:0.14, T:0.28
Consensus pattern (26 bp):
AACATACTTATGAAAAAAATGATTGA
Found at i:80356816 original size:27 final size:27
Alignment explanation
Indices: 80356786--80356939 Score: 127
Period size: 27 Copynumber: 5.7 Consensus size: 27
80356776 TACCTTATAG
* *
80356786 GGGTATGTCGATCATTTTACACTACAA
1 GGGTATTTCGATAATTTTACACTACAA
80356813 GGGTATTTCGGA-AATTTTACACTACAA
1 GGGTATTTC-GATAATTTTACACTACAA
* * ***
80356840 GGGTATTTCGATAATTTTATA-AATTGG
1 GGGTATTTCGATAATTTTACACTA-CAA
* * *
80356867 GGGTGTTTCGGTAATTTTACA-AATCAA
1 GGGTATTTCGATAATTTTACACTA-CAA
*
80356894 GGGTATTTCGATAATTTTACA-AATCAA
1 GGGTATTTCGATAATTTTACACTA-CAA
* *
80356921 GGGCATTTCGGTAATTTTA
1 GGGTATTTCGATAATTTTA
80356940 TAAATCGAGG
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 102 0.95
28 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACACTACAA
Found at i:80356944 original size:27 final size:27
Alignment explanation
Indices: 80356812--80357337 Score: 460
Period size: 27 Copynumber: 19.7 Consensus size: 27
80356802 TTACACTACA
* * *
80356812 AGGGTATTTCGGAAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * *
80356839 AGGGTATTTCGATAATTTTATAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
80356866 GGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
80356893 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
80356920 AGGGCATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
80356947 AGGATATTTCATTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
80356974 ATGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
80357001 AGGG--TTTCAATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
80357026 -GAGGTATTTTGATAATTTTATAAATCG
1 AG-GGTATTTCGGTAATTTTACAAATCG
** * **
80357053 AGGGTATTTTAGTAATTTTA-GAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
80357079 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
80357106 -GGTGTATTTCAGTAATTTTACAAAT-G
1 AGG-GTATTTCGGTAATTTTACAAATCG
* * *
80357132 TAGGGTGTTTCGATAATTTCACAAATCG
1 -AGGGTATTTCGGTAATTTTACAAATCG
* * * *
80357160 GGGGTATTTTGGTAATTTTATAAGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
80357187 AGGGTATTTCGATAA-TTT-CATAATCG
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
80357213 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
80357240 AGGGTATTTCATTAATTTCAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
80357266 AGGGTATCTCACTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
80357293 GGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
80357320 ATGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
80357338 CTCTTTATTA
Statistics
Matches: 405, Mismatches: 80, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
24 1 0.00
25 22 0.05
26 66 0.16
27 308 0.76
28 8 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:80357690 original size:28 final size:28
Alignment explanation
Indices: 80357654--80357712 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
80357644 TGGCCCCTTT
** *
80357654 AGGCCCAATCTCATTCACATGGCGCATC
1 AGGCCCAATCAAATTCACATGGCCCATC
*
80357682 AGGCCCAATCAAATTCATATGGCCCATC
1 AGGCCCAATCAAATTCACATGGCCCATC
80357710 AGG
1 AGG
80357713 TCGAACTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCAAATTCACATGGCCCATC
Found at i:80361068 original size:47 final size:47
Alignment explanation
Indices: 80360999--80361665 Score: 1091
Period size: 47 Copynumber: 14.2 Consensus size: 47
80360989 TCAGGACTTC
* * *
80360999 TCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* * * *
80361046 TCACATATATACACCTTCACATCCATCACATCGGCCATTAGGTCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361093 TCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
80361140 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
*
80361187 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361234 TCACATATATACACTTTCACATTCATCACATAGGCCATTAGGTCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* * *
80361281 TCTCAAATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361328 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361375 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361422 TCACATATATACACTTTCACTTTCATCACATTGGCCATTAGGTCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
*
80361469 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGTCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361516 TCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
* *
80361563 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
*
80361610 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
80361657 TCACATATA
1 TCACATATA
80361666 CATATCTTGT
Statistics
Matches: 579, Mismatches: 41, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 579 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
Found at i:80367211 original size:19 final size:19
Alignment explanation
Indices: 80367183--80367229 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
80367173 CTAGGGTTCG
* *
80367183 TTTTATAAAAACTACTTGT
1 TTTTAAAAAAACTACCTGT
80367202 TTTTAAAAAAAACTACCTGT
1 TTTT-AAAAAAACTACCTGT
80367222 TTTTAAAA
1 TTTTAAAA
80367230 GATCACGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (19 bp):
TTTTAAAAAAACTACCTGT
Found at i:80367214 original size:20 final size:20
Alignment explanation
Indices: 80367189--80367229 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
80367179 TTCGTTTTAT
*
80367189 AAAAACTACTTGTTTTTAAA
1 AAAAACTACCTGTTTTTAAA
80367209 AAAAACTACCTGTTTTTAAA
1 AAAAACTACCTGTTTTTAAA
80367229 A
1 A
80367230 GATCACGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAAACTACCTGTTTTTAAA
Found at i:80379017 original size:20 final size:21
Alignment explanation
Indices: 80378975--80379017 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
80378965 GCTTTCATGA
*
80378975 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
80378996 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
80379016 TT
1 TT
80379018 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:80381626 original size:22 final size:22
Alignment explanation
Indices: 80381601--80381653 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
80381591 CGACTCAACA
* * *
80381601 CAGTAAATAGGATGGCTCAATG
1 CAGTAAATAGGACGGCTAAAGG
80381623 CAGTAGAA-AGGACGGCTAAAGG
1 CAGTA-AATAGGACGGCTAAAGG
*
80381645 CCGTAAATA
1 CAGTAAATA
80381654 TCACAGCAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.17
Consensus pattern (22 bp):
CAGTAAATAGGACGGCTAAAGG
Found at i:80387685 original size:22 final size:23
Alignment explanation
Indices: 80387646--80387688 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
80387636 GAGATCCTAC
*
80387646 CCATCCATCCTCTACACTCCACT
1 CCATCCAACCTCTACACTCCACT
80387669 CCATCCAACC-CTACACTCCA
1 CCATCCAACCTCTACACTCCA
80387689 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCAACCTCTACACTCCACT
Found at i:80390077 original size:40 final size:40
Alignment explanation
Indices: 80390017--80390180 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
80390007 CGGGATTTAA
* ** *
80390017 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
80390057 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
80390097 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
80390137 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
80390177 CCGG
1 CCGG
80390181 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 100 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:80390164 original size:80 final size:80
Alignment explanation
Indices: 80390003--80390180 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
80389993 GAATCACGTA
* * * * **
80390003 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
80390067 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
80390082 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
80390146 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
80390162 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
80390181 GTATCATTCA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 69 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:80398113 original size:40 final size:40
Alignment explanation
Indices: 80398007--80398169 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
80397997 CGGGATTTAA
* * *
80398007 CCGGATATAACCACAAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
* *** *
80398046 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
*
80398086 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
80398126 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAATTGCCTTCGGGTCTTAGC
80398166 CCGG
1 CCGG
80398170 GTATCATTCA
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
39 25 0.24
40 76 0.73
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:80401613 original size:28 final size:29
Alignment explanation
Indices: 80401581--80401651 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
80401571 AATGAGATTG
80401581 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
80401609 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
80401638 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80401652 GACTTATTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 19 0.45
29 23 0.55
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:80407934 original size:17 final size:18
Alignment explanation
Indices: 80407907--80407940 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80407897 AACTAAATAT
80407907 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
80407925 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
80407941 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:80408091 original size:127 final size:127
Alignment explanation
Indices: 80407960--80408191 Score: 337
Period size: 127 Copynumber: 1.8 Consensus size: 127
80407950 ATGAGATATG
*
80407960 ATTAAAACTAATCCTAATTCTATGCTAAA-TTGATAAAAATTAATATATAAATTATAATAGATAT
1 ATTAAAACTAATCCTAACTCTAT-CTAAAGTTGATAAAAATTAATATAT--ATTATAATAGATAT
80408024 AATTACATATTAA-AGATTATCAT-TTTATTATT-ATTAAAAACTTATCAAATAAAATATGATTA
63 AATTACATATTAATA-ATTATCATATTTATTATTAATTAAAAACTTATCAAATAAAATATGATTA
80408086 A
127 A
* * *
80408087 ATTAACACTAATCCTAACTCTATCTAAAGTTGATAATAATTAATATATATTATAATGGATATAAT
1 ATTAAAACTAATCCTAACTCTATCTAAAGTTGATAAAAATTAATATATATTATAATAGATATAAT
* *
80408152 TATATATTAATAATTATCATATTTTTTATTAAATTAAAAA
66 TACATATTAATAATTATCATATTTATTATT-AATTAAAAA
80408192 AATTTATTCT
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
125 33 0.35
126 14 0.15
127 39 0.41
128 8 0.09
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (127 bp):
ATTAAAACTAATCCTAACTCTATCTAAAGTTGATAAAAATTAATATATATTATAATAGATATAAT
TACATATTAATAATTATCATATTTATTATTAATTAAAAACTTATCAAATAAAATATGATTAA
Found at i:80413422 original size:40 final size:40
Alignment explanation
Indices: 80413377--80413506 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
80413367 CGGAATACAA
80413377 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * * *
80413417 CCGGATAGAACGACTCGTACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
80413457 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
80413497 CCGGATATAA
1 CCGGATATAA
80413507 TTTCCAGCAC
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Done.