Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 27 of 345
Found at i:8662156 original size:20 final size:20
Alignment explanation
Indices: 8662131--8662168 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8662121 TCGGATAGGC
8662131 AATTTT-GGTTTATTATTAAG
1 AATTTTAGGTTT-TTATTAAG
8662151 AATTTTAGGTTTTTATTA
1 AATTTTAGGTTTTTATTA
8662169 GATAGCAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (20 bp):
AATTTTAGGTTTTTATTAAG
Found at i:8663827 original size:19 final size:20
Alignment explanation
Indices: 8663799--8663849 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8663789 AGTTCTGGAT
*
8663799 AAAAAT-AAATATTTTA-TA
1 AAAAATAAAATATTTAATTA
*
8663817 AAAAATAAAATGTTTAATTA
1 AAAAATAAAATATTTAATTA
*
8663837 AAAATTAAAATAT
1 AAAAATAAAATAT
8663850 ATTTTCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 6 0.22
19 8 0.30
20 13 0.48
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
AAAAATAAAATATTTAATTA
Found at i:8663832 original size:18 final size:19
Alignment explanation
Indices: 8663799--8663847 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
8663789 AGTTCTGGAT
8663799 AAAAATAAATATTTT-A-TA
1 AAAAATAAA-ATTTTAATTA
8663817 AAAAATAAAATGTTTAATTA
1 AAAAATAAAAT-TTTAATTA
*
8663837 AAAATTAAAAT
1 AAAAATAAAAT
8663848 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 2 0.07
18 12 0.44
19 1 0.04
20 12 0.44
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATAAAATTTTAATTA
Found at i:8664369 original size:77 final size:77
Alignment explanation
Indices: 8663974--8664699 Score: 774
Period size: 77 Copynumber: 9.2 Consensus size: 77
8663964 AAATATTAAC
* * * * * * * *
8663974 ACGTGTGAGCGATCATCAAATATGTTTTTTTCTTACAATAAGGAGAATATTAATTGATAAAATCC
1 ACGT-TGAGCGATCATTAAAGATG-TCTTTTATTACAATAA--AAAATATTAACTAATAAAATTC
*
8664039 GTTAATTT-TTTAGTG
62 GTTAATTTCGTTAGTG
* * * * * * * *
8664054 ACATGTGAGCGATCATCAAATATTTTTTTTATTACAATAAAGAGAACAATAACCAATAAAATTCG
1 ACGT-TGAGCGATCATTAAAGATGTCTTTTATTACAATAAA-A-AATATTAACTAATAAAATTCG
8664119 TTAATTTCGTTAGTG
63 TTAATTTCGTTAGTG
* * * * *
8664134 ATGTGTGAGCGATCATCAAAGAATTTTTTTTATTACAATAAAGAGAATATTAACTAATAAAACTC
1 ACGT-TGAGCGATCATTAAAG-ATGTCTTTTATTACAATAAA-A-AATATTAACTAATAAAATTC
8664199 GTTAATTTCGTTAGTG
62 GTTAATTTCGTTAGTG
*
8664215 ACGTGTGAGCGATCATTAAAGATGTCTTTTATTACAATAAAAAAATATTAACTAATAAAATTTGT
1 ACGT-TGAGCGATCATTAAAGATGTCTTTTATTACAAT-AAAAAATATTAACTAATAAAATTCGT
* *
8664280 CAATTTCATTAGTG
64 TAATTTCGTTAGTG
* * * * *
8664294 ATGTTGAGTGATCATTAAAGATGTCTTTTATTATAATAAAAAATATTTACTAATAAAATTTGTTA
1 ACGTTGAGCGATCATTAAAGATGTCTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTA
*
8664359 ATTTTGTTAGTG
66 ATTTCGTTAGTG
* * ** *
8664371 ATGTTTAGCGATCATTAAAGAAAT-TTTCTATTACAACAAAAGAAATATTAACTAATAAAATTCG
1 ACGTTGAGCGATCATTAAAGATGTCTTT-TATTACAA-TAAA-AAATATTAACTAATAAAATTCG
*
8664435 TTAATTTCGGTAGTG
63 TTAATTTCGTTAGTG
* * * *
8664450 ACGTTGAGTGATTATTAAAGATGTCTTTTATTATAATAAAAAGTATTAACTAATAAAATTCGTTA
1 ACGTTGAGCGATCATTAAAGATGTCTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTA
*
8664515 ATTTTGTTAGTG
66 ATTTCGTTAGTG
* ** *
8664527 ACGTTGAGCGATCATTAAAAAAAAT-TTTCTATTACAACAAAAGAAATATTAACTAATAAAATTC
1 ACGTTGAGCGATCATT-AAAGATGTCTTT-TATTACAA-TAAA-AAATATTAACTAATAAAATTC
8664591 GTTAATTTCGTTAGTG
62 GTTAATTTCGTTAGTG
* * * * *
8664607 ACGTTGAGTGATTATTAAAGATGTCTTTTATTATAATAAAAAGTATTAATTAATAAAATTCGTTA
1 ACGTTGAGCGATCATTAAAGATGTCTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTA
8664672 ATTTCGTTAGTG
66 ATTTCGTTAGTG
*
8664684 ACGTATGAACGATCAT
1 ACGT-TGAGCGATCAT
8664700 CACAAATTGT
Statistics
Matches: 556, Mismatches: 75, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
76 3 0.01
77 154 0.28
78 60 0.11
79 145 0.26
80 117 0.21
81 77 0.14
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (77 bp):
ACGTTGAGCGATCATTAAAGATGTCTTTTATTACAATAAAAAATATTAACTAATAAAATTCGTTA
ATTTCGTTAGTG
Found at i:8664619 original size:157 final size:157
Alignment explanation
Indices: 8664019--8664699 Score: 881
Period size: 156 Copynumber: 4.3 Consensus size: 157
8664009 CAATAAGGAG
* * * * * * ** *
8664019 AATATTAATTGATAAAATCCGTTAATTTT-TTAGTGACATGTGAGCGATCATCAAATATTTTTTT
1 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCATTAAAGAAATTTTC
* * * *
8664083 TATTACAATAAAGAGAACA-A-TAACCAATAAAATTCGTTAATTTCGTTAGTGATGTGTGAGCGA
66 TATTACAACAAA-AGAA-ATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGT-TGAGTGA
* * * *
8664146 TCATCAAAGAATTTTTTTTATTACAATAAAGA
128 TCATTAAAG-ATGTCTTTTATTATAATAAA-A
* * **
8664178 GAATATTAACTAATAAAACTCGTTAATTTCGTTAGTGACGTGTGAGCGATCATTAAAGATGTCTT
1 -AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCATTAAAGAAAT-TT
* * * * *
8664243 T-TATTACAATAAAA-AAATATTAACTAATAAAATTTGTCAATTTCATTAGTGATGTTGAGTGAT
64 TCTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTTGAGTGAT
8664306 CATTAAAGATGTCTTTTATTATAATAAAA
129 CATTAAAGATGTCTTTTATTATAATAAAA
* * * *
8664335 AATATTTACTAATAAAATTTGTTAATTTTGTTAGTGATGT-TTAGCGATCATTAAAGAAATTTTC
1 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCATTAAAGAAATTTTC
* *
8664399 TATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGGTAGTGACGTTGAGTGATTA
66 TATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTTGAGTGATCA
8664464 TTAAAGATGTCTTTTATTATAATAAAA
131 TTAAAGATGTCTTTTATTATAATAAAA
* *
8664491 AGTATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGT-TGAGCGATCATTAAAAAAAATTTT
1 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCATT-AAAGAAATTTT
*
8664555 CTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTTGAGTGATT
65 CTATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTTGAGTGATC
8664620 ATTAAAGATGTCTTTTATTATAATAAAA
130 ATTAAAGATGTCTTTTATTATAATAAAA
* * * * *
8664648 AGTATTAATTAATAAAATTCGTTAATTTCGTTAGTGACGTATGAACGATCAT
1 AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCAT
8664700 CACAAATTGT
Statistics
Matches: 470, Mismatches: 43, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
154 3 0.01
155 29 0.06
156 154 0.33
157 141 0.30
158 28 0.06
159 17 0.04
160 56 0.12
161 39 0.08
162 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.39
Consensus pattern (157 bp):
AATATTAACTAATAAAATTCGTTAATTTTGTTAGTGACGTGTGAGCGATCATTAAAGAAATTTTC
TATTACAACAAAAGAAATATTAACTAATAAAATTCGTTAATTTCGTTAGTGACGTTGAGTGATCA
TTAAAGATGTCTTTTATTATAATAAAA
Found at i:8668048 original size:22 final size:22
Alignment explanation
Indices: 8668023--8668072 Score: 91
Period size: 22 Copynumber: 2.2 Consensus size: 22
8668013 GTTTCCAAAT
8668023 GCAGTCTGAATATGTATACTTC
1 GCAGTCTGAATATGTATACTTC
8668045 GCAGTCTGAATATGTATACTTC
1 GCAGTCTGAATATGTATACTTC
8668067 GTCAGT
1 G-CAGT
8668073 TATATTCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (22 bp):
GCAGTCTGAATATGTATACTTC
Found at i:8677639 original size:18 final size:17
Alignment explanation
Indices: 8677611--8677654 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
8677601 TTTATATTTT
*
8677611 TAAAAACTATTAAATATTA
1 TAAAAA-TATT-AATATGA
*
8677630 TAAAAATATTAGTATGA
1 TAAAAATATTAATATGA
8677647 TAAAAATA
1 TAAAAATA
8677655 ATTTCTAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 13 0.57
18 4 0.17
19 6 0.26
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (17 bp):
TAAAAATATTAATATGA
Found at i:8678764 original size:125 final size:127
Alignment explanation
Indices: 8678570--8678831 Score: 334
Period size: 125 Copynumber: 2.1 Consensus size: 127
8678560 GAGTATAAGC
*
8678570 TTGCCTTCTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCAGATATTTAGAT
1 TTGCCTT-TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCAGATACTTAGAT
* * *
8678635 CAAAC-AGAAAATCAAAACCCAGTACGTCAGGGCACGACTACTCGAATTTCTAAATACGGAATA
65 CAAACGA-AAAATCAAAACCCAGTACGTCAGGACACGACTACTCGAATTTCCAAATACCGAATA
* * * * *
8678698 TTGTCTTTATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATT-GGTTACTTAGAT
1 TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGAT-ATTCAGATACTTAGAT
* * * * * *
8678760 CAAACGAAAAATCGAAACCCAGTACGTTAGGATACGATTTCTCGAATTTCCAAGTACCGAATA
65 CAAACGAAAAATCAAAACCCAGTACGTCAGGACACGACTACTCGAATTTCCAAATACCGAATA
8678823 TTGCCTTTA
1 TTGCCTTTA
8678832 CTTGAAAAAT
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
125 77 0.66
126 7 0.06
127 26 0.22
128 6 0.05
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (127 bp):
TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCAGATACTTAGATC
AAACGAAAAATCAAAACCCAGTACGTCAGGACACGACTACTCGAATTTCCAAATACCGAATA
Found at i:8679015 original size:3 final size:3
Alignment explanation
Indices: 8678994--8679352 Score: 79
Period size: 3 Copynumber: 118.7 Consensus size: 3
8678984 ATAGGACAGG
* * ** *
8678994 TAA TAA AAA TAA TAG TAA TAA TAA TAA -AA T-A TAA TGG TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * ** *
8679040 TAA GAA -AA GTAA -ATA TAA TGA TGA TAA CAG TGT TAA AAA TAA TAA
1 TAA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
8679085 TAA TAA TAA -ACA -AA CGACA TAT TAA TGA TAA TAGA AAA TAA TGA TAA
1 TAA TAA TAA TA-A TAA -TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* *
8679132 TAA TAA TGGAA GTAA TGAA -AA TAA TAA TAA TAGA -AA CAA TAG TAA
1 TAA TAA T--AA -TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
8679177 TAA -AA GTAA TAA TAA -AA TAGA AAA TAA CAA TGA TACA TTAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A -TAA TAA TAA
* ** * * *
8679224 TAA T-A TATG TGC TAA TAA TAA TAA CAA T-A TAA -AA -AA AAA GAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
8679266 -AA TAA TAC T-A TAT TAA TAA -AA CTAA TAA TAG TAA GTTAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA --TAA TAA TAA
* * * *
8679311 TAG TAA TAA AAA GGTAA AAA TAA TAA TAA -AA TAA TAA AAA TA
1 TAA TAA TAA TAA --TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8679353 CTATTACGTT
Statistics
Matches: 257, Mismatches: 62, Indels: 74
0.65 0.16 0.19
Matches are distributed among these distances:
2 31 0.12
3 194 0.75
4 21 0.08
5 10 0.04
6 1 0.00
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:8679033 original size:22 final size:21
Alignment explanation
Indices: 8678994--8679038 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
8678984 ATAGGACAGG
8678994 TAATAAAAATAATAGTAATAA
1 TAATAAAAATAATAGTAATAA
*
8679015 TAATAAAATATAATGGTAATAA
1 TAATAAAA-ATAATAGTAATAA
8679037 TA
1 TA
8679039 TTAAGAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (21 bp):
TAATAAAAATAATAGTAATAA
Found at i:8679162 original size:15 final size:14
Alignment explanation
Indices: 8679107--8679352 Score: 58
Period size: 14 Copynumber: 16.8 Consensus size: 14
8679097 AACGACATAT
* *
8679107 TAATGATAATAGAA
1 TAATAATAATAAAA
*
8679121 -AATAATGATAATAA
1 TAATAATAATAA-AA
8679135 TAATGGAAGTAATGAAAA
1 TAAT--AA-TAAT-AAAA
8679153 TAATAATAATAGAAA
1 TAATAATAATA-AAA
* *
8679168 CAATAGTAATAAAA
1 TAATAATAATAAAA
8679182 GTAATAATAAAATAGAAAA
1 -TAATAAT--AAT--AAAA
* * * *
8679201 TAACAATGATACAT
1 TAATAATAATAAAA
*
8679215 TAATAATAATAATA
1 TAATAATAATAAAA
* **
8679229 TATGTGCTAATAATAA
1 TA-ATAATAATAA-AA
*
8679245 TAACAAT-ATAAAA
1 TAATAATAATAAAA
* *
8679258 -AAAAAGAA-AATAA
1 TAATAATAATAA-AA
*
8679271 TACTATATTAATAAAA
1 TA--ATAATAATAAAA
* **
8679287 CTAATAATAGTAAGT
1 -TAATAATAATAAAA
*
8679302 TAATAATAATAGTAA
1 TAATAATAATA-AAA
*
8679317 TAA-AA-AGGT-AAA
1 TAATAATA-ATAAAA
8679329 -AATAATAATAAAA
1 TAATAATAATAAAA
*
8679342 TAATAAAAATA
1 TAATAATAATA
8679353 CTATTACGTT
Statistics
Matches: 163, Mismatches: 42, Indels: 54
0.63 0.16 0.21
Matches are distributed among these distances:
11 2 0.01
12 11 0.07
13 18 0.11
14 46 0.28
15 43 0.26
16 13 0.08
17 9 0.06
18 15 0.09
19 6 0.04
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (14 bp):
TAATAATAATAAAA
Found at i:8679348 original size:20 final size:20
Alignment explanation
Indices: 8679237--8679352 Score: 65
Period size: 20 Copynumber: 5.7 Consensus size: 20
8679227 TATATGTGCT
* *
8679237 AATAATAATAACAAT-ATAA
1 AATAATAAAAATAATAATAA
* * * *
8679256 AAAAAAAGAAAATAATACTAT
1 AATAATA-AAAATAATAATAA
* *
8679277 ATTAATAAAACTAATAATAGTA
1 AATAATAAAAATAATAATA--A
* * *
8679299 AGTTAATAATAATAGTAATAA
1 A-ATAATAAAAATAATAATAA
*
8679320 AA-AGGTAAAAATAATAATAA
1 AATA-ATAAAAATAATAATAA
8679340 AATAATAAAAATA
1 AATAATAAAAATA
8679353 CTATTACGTT
Statistics
Matches: 70, Mismatches: 20, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
19 6 0.09
20 39 0.56
21 9 0.13
22 1 0.01
23 15 0.21
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (20 bp):
AATAATAAAAATAATAATAA
Found at i:8681816 original size:38 final size:38
Alignment explanation
Indices: 8681773--8681855 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 38
8681763 ACCTTAAAGA
* *
8681773 CCCGCAGCCTTCATGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGCCTTCATGCTGGTAAAATATCAGGGATAAAT
* ** **
8681811 CCCGCAGGCTTTGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGCCTTCATGCTGGTAAAATATCAGGGATAAAT
*
8681849 CTCGCAG
1 CCCGCAG
8681856 GCCTAGTGCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (38 bp):
CCCGCAGCCTTCATGCTGGTAAAATATCAGGGATAAAT
Found at i:8681856 original size:38 final size:38
Alignment explanation
Indices: 8681786--8681875 Score: 117
Period size: 38 Copynumber: 2.4 Consensus size: 38
8681776 GCAGCCTTCA
** * * * *
8681786 TGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTTG
1 TGCTGGTATTATATCAGGGATAAATCCCGCAGGCCTAG
*
8681824 TGCTGGTATTATATCAGGGATAAATCTCGCAGGCCTAG
1 TGCTGGTATTATATCAGGGATAAATCCCGCAGGCCTAG
8681862 TGCTGGTATTATAT
1 TGCTGGTATTATAT
8681876 TTGGGCCTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
TGCTGGTATTATATCAGGGATAAATCCCGCAGGCCTAG
Found at i:8681950 original size:43 final size:43
Alignment explanation
Indices: 8681873--8681954 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
8681863 GCTGGTATTA
* * **
8681873 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
8681916 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
8681955 AATGATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:8683529 original size:13 final size:13
Alignment explanation
Indices: 8683511--8683544 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8683501 GGTGATGGAG
8683511 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
*
8683524 TTAGT-GGTTGGT
1 TTAGTGGGGTGGT
8683536 TTAGTGGGG
1 TTAGTGGGG
8683545 GTGTTAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.00, G:0.50, T:0.41
Consensus pattern (13 bp):
TTAGTGGGGTGGT
Found at i:8684520 original size:26 final size:26
Alignment explanation
Indices: 8684491--8684540 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
8684481 CACTTTGTGT
8684491 AATTACAAACAATTACACCCAAATTC
1 AATTACAAACAATTACACCCAAATTC
*
8684517 AATTACAAGCAATTACACCCAAAT
1 AATTACAAACAATTACACCCAAAT
8684541 CCACACCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.26, G:0.02, T:0.22
Consensus pattern (26 bp):
AATTACAAACAATTACACCCAAATTC
Found at i:8685944 original size:21 final size:21
Alignment explanation
Indices: 8685920--8685959 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8685910 CATATCTTAT
*
8685920 CTAATAAT-ATATATTTTAAGG
1 CTAA-AATCATATACTTTAAGG
8685941 CTAAAATCATATACTTTAA
1 CTAAAATCATATACTTTAA
8685960 AACTGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (21 bp):
CTAAAATCATATACTTTAAGG
Found at i:8687221 original size:6 final size:6
Alignment explanation
Indices: 8687210--8687234 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8687200 TAACGTTGTG
8687210 GAAGAT GAAGAT GAAGAT GAAGAT G
1 GAAGAT GAAGAT GAAGAT GAAGAT G
8687235 CAGAGTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GAAGAT
Found at i:8689975 original size:55 final size:54
Alignment explanation
Indices: 8689898--8690005 Score: 135
Period size: 55 Copynumber: 2.0 Consensus size: 54
8689888 TAATTTTTCA
* * * ** * *
8689898 AAAATATGCTTCTTTTGGATCGATTGTTTTTATGTTTAAATTGATTGTCATGTT
1 AAAATATACTTCTTTTGAATCGATTATTCATATATTTAAATTAATTGTCATGTT
*
8689952 AAAATATTACTTCTTTTGAATCGATTATTCATATATTTAAATTAATTGTTATGT
1 AAAATA-TACTTCTTTTGAATCGATTATTCATATATTTAAATTAATTGTCATGT
8690006 AACATGTCTA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
54 6 0.13
55 39 0.87
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (54 bp):
AAAATATACTTCTTTTGAATCGATTATTCATATATTTAAATTAATTGTCATGTT
Found at i:8693871 original size:32 final size:30
Alignment explanation
Indices: 8693817--8693875 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
8693807 TAAAAAATTT
*
8693817 AAAAAATATATAAATACATAAATATTTTCAA
1 AAAAAATATATAAAAACATAAAT-TTTTCAA
**
8693848 AAAAAATATAATAAAAATTTAAATTTTT
1 AAAAAATAT-ATAAAAACATAAATTTTT
8693876 ATATTAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 13 0.54
32 11 0.46
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (30 bp):
AAAAAATATATAAAAACATAAATTTTTCAA
Found at i:8695708 original size:28 final size:27
Alignment explanation
Indices: 8695656--8695708 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
8695646 CTATTCAGAA
* *
8695656 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
8695683 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
8695709 TATTACAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:8695762 original size:20 final size:20
Alignment explanation
Indices: 8695737--8695782 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8695727 ATTGGGCCTT
8695737 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
8695757 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
8695776 GCCCATA
1 GCCCATA
8695783 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:8701118 original size:28 final size:27
Alignment explanation
Indices: 8701066--8701118 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
8701056 CTATTCAGAA
* *
8701066 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
8701093 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
8701119 TATTACAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:8701172 original size:20 final size:20
Alignment explanation
Indices: 8701147--8701192 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8701137 ATTGGGCCTT
8701147 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
8701167 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
8701186 GCCCATA
1 GCCCATA
8701193 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:8707848 original size:14 final size:14
Alignment explanation
Indices: 8707829--8707855 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8707819 GTGAAAAATA
8707829 AAATAAAATAAAGT
1 AAATAAAATAAAGT
8707843 AAATAAAATAAAG
1 AAATAAAATAAAG
8707856 AACACACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAGT
Found at i:8708870 original size:34 final size:35
Alignment explanation
Indices: 8708826--8708895 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
8708816 AGAATAAATA
*
8708826 TAAATACGGAAGCGTACCTG-AATTTATTGATTTC
1 TAAATACGGAAGCGTACATGAAATTTATTGATTTC
* *
8708860 TAAATGCGGAAGTGTACATGAAATTTATTGATTTC
1 TAAATACGGAAGCGTACATGAAATTTATTGATTTC
8708895 T
1 T
8708896 TGAAATCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (35 bp):
TAAATACGGAAGCGTACATGAAATTTATTGATTTC
Found at i:8709526 original size:20 final size:20
Alignment explanation
Indices: 8709501--8709542 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
8709491 GCATGGAAAT
8709501 TACATGCAGTATGATTCAAA
1 TACATGCAGTATGATTCAAA
8709521 TACATGCAGTATGATTCAAA
1 TACATGCAGTATGATTCAAA
8709541 TA
1 TA
8709543 TGTCTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (20 bp):
TACATGCAGTATGATTCAAA
Found at i:8712413 original size:39 final size:39
Alignment explanation
Indices: 8712368--8712488 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
8712358 AATTATATTA
*
8712368 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
8712407 CCAGCACGAAGCCTACGAGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
8712446 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
8712485 CCAG
1 CCAG
8712489 TGTCTTGCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:8714075 original size:2 final size:2
Alignment explanation
Indices: 8714023--8714056 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8714013 GCTGAAAACA
*
8714023 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8714057 TAGATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:8714855 original size:3 final size:3
Alignment explanation
Indices: 8714847--8714879 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8714837 TTTCTGCATT
8714847 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8714880 GTGTATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8714936 original size:139 final size:141
Alignment explanation
Indices: 8714756--8715097 Score: 314
Period size: 133 Copynumber: 2.4 Consensus size: 141
8714746 TATGTTTATT
** * *
8714756 ATATATGTACGTATGTACATTTCTATATATAAGTATTATTTTTATTACTTCATTTTAATATTACT
1 ATATATGTATATATATAC-TTT-TATATAT-AGTATTATTTTT-TTACTT-AATTTAATATTACT
*
8714821 ACTAT-ATCATATT-TACTTTCTGCATT-TTATTATTATTATTATTATTATTATTATTATTAGT-
61 A-TATGATC-T-TTGTA-TTTCTACATTATTATTATTATTATTATTATTATTATTATTATTAGTA
8714882 GTATAT-T-T-T-TATGTAC
122 GTATATATATGTGTATGTAC
** *
8714898 ATATATGTATATATATACTTTTATATATAGTATTATTTTTTTA---AATTTAATATTTTTATTTG
1 ATATATGTATATATATACTTTTATATATAGTATTATTTTTTTACTTAATTTAATATTACTATATG
* * * *
8714960 CTCTTTGTATTTCTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATAGT
66 ATCTTTGTATTTCTACATTATTATTATTATTATTATTATTATTATTATTATTAGTAGTATATA-T
* *
8715025 AGTGTGTATTTGC
130 A-TGTGTATGTAC
* *
8715038 ATTATATGTATATATATA--TTGATATATAGTATTATTTTTGTTTACTTTACTTTAATATTA
1 A-TATATGTATATATATACTTTTATATATAGTATTA-TTTT-TTTAC-TTAATTTAATATTA
8715098 TTATTACCAT
Statistics
Matches: 166, Mismatches: 17, Indels: 31
0.78 0.08 0.14
Matches are distributed among these distances:
132 10 0.06
133 39 0.23
134 19 0.11
136 1 0.01
138 4 0.02
139 28 0.17
140 17 0.10
141 23 0.14
142 15 0.09
145 10 0.06
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.58
Consensus pattern (141 bp):
ATATATGTATATATATACTTTTATATATAGTATTATTTTTTTACTTAATTTAATATTACTATATG
ATCTTTGTATTTCTACATTATTATTATTATTATTATTATTATTATTATTATTAGTAGTATATATA
TGTGTATGTAC
Found at i:8714983 original size:3 final size:3
Alignment explanation
Indices: 8714975--8715019 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
8714965 TGTATTTCTA
8714975 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8715020 ATAGTAGTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8715133 original size:139 final size:137
Alignment explanation
Indices: 8714851--8715133 Score: 285
Period size: 139 Copynumber: 2.0 Consensus size: 137
8714841 TGCATTTTAT
* * *
8714851 TATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATGTACATATATGTATATATATAC
1 TATTATTATTATTATTATTATTATTATTAGTATATATGTGTATGTACATATATGTATATATATAC
* * * * * *
8714916 TTTTATATATAGTATTATTTTTTTAAATTTAATATTTTTATTTGCTCTTTGTATTTCTATATTAT
66 -TTGATATATAGTATTATTTTTTTAAATTTAATATTATTATTTACTCATTATATTTCTATATTAG
*
8714981 TATTATTAT
130 TA-TATTAC
* *
8714990 TATTATTATTATTATTATTATTATTATTA-TATAGTAGTGTGTATTTGCATTATATGTATATATA
1 TATTATTATTATTATTATTATTATTATTAGTATA-TA-TGTGTATGTACA-TATATGTATATATA
*
8715054 TA-TTGATATATAGTATTATTTTTGTTTACTTTACTTTAATATTATTA-TTAC-CATTATCA-TT
63 TACTTGATATATAGTATTA-TTTT-TTTA----AATTTAATATTATTATTTACTCATTAT-ATTT
8715115 CT-TATT-GTA-ATTAC
121 CTATATTAGTATATTAC
8715129 TATTA
1 TATTA
8715134 CCATTGTATT
Statistics
Matches: 121, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
138 3 0.02
139 55 0.45
140 12 0.10
141 22 0.18
142 4 0.03
143 8 0.07
144 4 0.03
145 13 0.11
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.59
Consensus pattern (137 bp):
TATTATTATTATTATTATTATTATTATTAGTATATATGTGTATGTACATATATGTATATATATAC
TTGATATATAGTATTATTTTTTTAAATTTAATATTATTATTTACTCATTATATTTCTATATTAGT
ATATTAC
Found at i:8718951 original size:29 final size:29
Alignment explanation
Indices: 8718910--8719042 Score: 114
Period size: 29 Copynumber: 4.6 Consensus size: 29
8718900 GGTTACAGAA
*
8718910 CTCGCACACACAGTGCCTTAACAATCAAT
1 CTCGCACACACAGTGCCTTAACAACCAAT
*
8718939 CTCGCACACACAGTG-CTTCAACAACCGAT
1 CTCGCACACACAGTGCCTT-AACAACCAAT
* * **
8718968 CTCGCACACAAAATGCTCGGTT-AC--GGAA-
1 CTCGCACACACAGTGC-C--TTAACAACCAAT
* *
8718996 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTTAACAACCAAT
*
8719025 CTCACACACACAGTGCCT
1 CTCGCACACACAGTGCCT
8719043 ATGTTCACTT
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 1 0.01
28 18 0.22
29 54 0.67
31 3 0.04
33 2 0.02
ACGTcount: A:0.32, C:0.37, G:0.14, T:0.17
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTTAACAACCAAT
Found at i:8719002 original size:86 final size:86
Alignment explanation
Indices: 8718871--8719040 Score: 268
Period size: 86 Copynumber: 2.0 Consensus size: 86
8718861 CTTAGTGCCC
* * * * *
8718871 CAACAACCGATCTTGCACACACAGTGCTCGGTTACAGAACTCGCACACACAGTGCCTTAACAATC
1 CAACAACCGATCTCGCACACAAAATGCTCGGTTACAGAACTCGCACACACAGTGCCTCAACAACC
*
8718936 AATCTCGCACACACAGTGCTT
66 AATCTCACACACACAGTGCTT
*
8718957 CAACAACCGATCTCGCACACAAAATGCTCGGTTACGGAACTCGCACACACAGTGCCTCAACAACC
1 CAACAACCGATCTCGCACACAAAATGCTCGGTTACAGAACTCGCACACACAGTGCCTCAACAACC
*
8719022 GATCTCACACACACAGTGC
66 AATCTCACACACACAGTGC
8719041 CTATGTTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 76 1.00
ACGTcount: A:0.32, C:0.35, G:0.15, T:0.17
Consensus pattern (86 bp):
CAACAACCGATCTCGCACACAAAATGCTCGGTTACAGAACTCGCACACACAGTGCCTCAACAACC
AATCTCACACACACAGTGCTT
Found at i:8721321 original size:39 final size:39
Alignment explanation
Indices: 8721278--8721432 Score: 247
Period size: 39 Copynumber: 4.0 Consensus size: 39
8721268 TTATATTACC
* *
8721278 AGCACAAAGCCTGCGGGACTTTAGCACGGATACATTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCT
* * * *
8721317 AGCACGAAGCCTACGAGACTTTAGCCCGGATATATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCT
*
8721356 AGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCT
8721395 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
8721433 CAGTGTCTTG
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCT
Found at i:8724846 original size:27 final size:27
Alignment explanation
Indices: 8724802--8724906 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
8724792 GCGAGGCTGC
* *
8724802 CAGATATTGTGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGTCACCAGATA
*
8724829 TAGATATTGTGGCAGAGTCACCAGA-A
1 CAGATATTGTGGCAGAGTCACCAGATA
8724855 CAGATATATGTGGCAGAGTCACCAGAT-
1 CAGATAT-TGTGGCAGAGTCACCAGATA
* *
8724882 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGTCACCAG
8724907 GATGCTTCCT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 7 0.10
27 60 0.87
28 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGTCACCAGATA
Found at i:8726534 original size:26 final size:26
Alignment explanation
Indices: 8726504--8726637 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
8726494 TGAAATTCCC
8726504 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8726530 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8726556 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
8726582 ATAATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
8726608 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8726634 ATCA
1 ATCA
8726638 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8730456 original size:27 final size:25
Alignment explanation
Indices: 8730396--8730456 Score: 59
Period size: 27 Copynumber: 2.3 Consensus size: 25
8730386 ATCAGTTCTT
*
8730396 ATTATTTTATTATTATTGTATTTCAA
1 ATTA-TTTATAATTATTGTATTTCAA
* *
8730422 ATTTTTTATAATTATTAAGTATTTTAA
1 ATTATTTATAATTATT--GTATTTCAA
*
8730449 GTTATTTA
1 ATTATTTA
8730457 GGAGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 11 0.39
26 3 0.11
27 14 0.50
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (25 bp):
ATTATTTATAATTATTGTATTTCAA
Found at i:8730653 original size:27 final size:26
Alignment explanation
Indices: 8730623--8730686 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
8730613 CTCTTTGAAG
*
8730623 TTAATAAA-TTCTCTTTGAGTTTTTCTT
1 TTAAAAAATTTCTC-TTGAG-TTTTCTT
*
8730650 TTAAAAAATTTTTCTTGAGTTTTCTT
1 TTAAAAAATTTCTCTTGAGTTTTCTT
*
8730676 TTAAAGAATTT
1 TTAAAAAATTT
8730687 TAACAATCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.52
27 12 0.36
28 4 0.12
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (26 bp):
TTAAAAAATTTCTCTTGAGTTTTCTT
Found at i:8730679 original size:26 final size:27
Alignment explanation
Indices: 8730637--8730687 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
8730627 TAAATTCTCT
8730637 TTGAGTTTTTCTTTTAAAAAATTTTTC
1 TTGAGTTTTTCTTTTAAAAAATTTTTC
*
8730664 TTGAG-TTTTCTTTTAAAGAATTTT
1 TTGAGTTTTTCTTTTAAAAAATTTT
8730688 AACAATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.59
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTAAAAAATTTTTC
Found at i:8730959 original size:67 final size:67
Alignment explanation
Indices: 8730851--8730979 Score: 249
Period size: 67 Copynumber: 1.9 Consensus size: 67
8730841 TTCATCTATC
*
8730851 TTCTTTATTGTTTTAATCTTTGATTTATTACTTTTTTTTATTTATCTTAGTCATTTATTTTAGGT
1 TTCTTTATTGTTTTAATCTTTGATTTATTACTTTATTTTATTTATCTTAGTCATTTATTTTAGGT
8730916 CA
66 CA
8730918 TTCTTTATTGTTTTAATCTTTGATTTATTACTTTATTTTATTTATCTTAGTCATTTATTTTA
1 TTCTTTATTGTTTTAATCTTTGATTTATTACTTTATTTTATTTATCTTAGTCATTTATTTTA
8730980 TTTGACCTAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.65
Consensus pattern (67 bp):
TTCTTTATTGTTTTAATCTTTGATTTATTACTTTATTTTATTTATCTTAGTCATTTATTTTAGGT
CA
Found at i:8742006 original size:20 final size:20
Alignment explanation
Indices: 8741972--8742019 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8741962 TGGTAAGGAT
8741972 TATATTTT-GATATTTAAAA
1 TATATTTTAGATATTTAAAA
* *
8741991 TATATTTTATATATTTAAAT
1 TATATTTTAGATATTTAAAA
*
8742011 TAAATTTTA
1 TATATTTTA
8742020 CAAATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TATATTTTAGATATTTAAAA
Found at i:8744179 original size:29 final size:29
Alignment explanation
Indices: 8744141--8744239 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 29
8744131 GCCCCCCAAA
8744141 AAAACCTAACCCAAAAAAAAAAAAAAAAG
1 AAAACCTAACCCAAAAAAAAAAAAAAAAG
* *
8744170 AAAACCTAACCCCCCCAAAAAAGAAGAAAAAAG
1 AAAACCTAA----CCCAAAAAAAAAAAAAAAAG
8744203 AAAAACCTAA--CAAAAAAATAAAAAATAAA-
1 -AAAACCTAACCCAAAAAAA-AAAAAA-AAAG
8744232 AAAACCTA
1 AAAACCTA
8744240 GCCACCTAAC
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
28 15 0.25
29 14 0.24
30 3 0.05
33 18 0.31
34 9 0.15
ACGTcount: A:0.71, C:0.19, G:0.04, T:0.06
Consensus pattern (29 bp):
AAAACCTAACCCAAAAAAAAAAAAAAAAG
Found at i:8744200 original size:33 final size:34
Alignment explanation
Indices: 8744150--8744213 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
8744140 AAAAACCTAA
8744150 CCCAAAAAAAAAAAAAAAAG-AAAACCTAACCCC
1 CCCAAAAAAAAAAAAAAAAGAAAAACCTAACCCC
* *
8744183 CCCAAAAAAGAAGAAAAAAGAAAAACCTAAC
1 CCCAAAAAAAAAAAAAAAAGAAAAACCTAAC
8744214 AAAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.67, C:0.23, G:0.06, T:0.03
Consensus pattern (34 bp):
CCCAAAAAAAAAAAAAAAAGAAAAACCTAACCCC
Found at i:8744749 original size:29 final size:29
Alignment explanation
Indices: 8744693--8744749 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
8744683 CTCTTCTTTT
* *
8744693 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
8744722 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
8744750 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:8745020 original size:11 final size:11
Alignment explanation
Indices: 8745002--8745031 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8744992 GTGTATATTG
8745002 TATATATTATA
1 TATATATTATA
*
8745013 TTTATATTATA
1 TATATATTATA
8745024 TATATATT
1 TATATATT
8745032 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:8749989 original size:44 final size:45
Alignment explanation
Indices: 8749899--8750027 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
8749889 GACAGAACGA
*
8749899 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
8749945 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
8749989 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8750028 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:8761057 original size:44 final size:45
Alignment explanation
Indices: 8760967--8761095 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
8760957 GACAGAACGA
*
8760967 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
8761013 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
8761057 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8761096 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:8762915 original size:12 final size:12
Alignment explanation
Indices: 8762898--8762933 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
8762888 AACATTTTGA
8762898 CATTCATGCATT
1 CATTCATGCATT
8762910 CATTCATGCATT
1 CATTCATGCATT
*
8762922 CATTCATACATT
1 CATTCATGCATT
8762934 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:8771505 original size:72 final size:71
Alignment explanation
Indices: 8771385--8771568 Score: 237
Period size: 72 Copynumber: 2.5 Consensus size: 71
8771375 AAGCCTTTTT
*
8771385 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGG-TCACGCTGAGG
1 ATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGAT-ACGCTGAGG
*
8771449 TATTTTCA
64 TAATTTCA
** *
8771457 ATTTTTGTGTTTTAATTTCAACTCATATTACGAGAGGTGAGT-GAAGCCTCAGGATACGCTGAGG
1 ATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTCG-AGCCTCAGGATACGCTGAGG
8771521 TAATTTCA
64 TAATTTCA
* *
8771529 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG
1 ATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTG
8771569 GGTTGAACCT
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
71 3 0.03
72 68 0.70
73 26 0.27
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGATACGCTGAGGTA
ATTTCA
Found at i:8771759 original size:117 final size:117
Alignment explanation
Indices: 8771550--8771777 Score: 332
Period size: 117 Copynumber: 1.9 Consensus size: 117
8771540 TCAAGAATCA
*
8771550 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
* * * *
8771615 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAATTTTAAATTG
* * **
8771667 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTTATTTTTGTTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTG
* * *
8771731 CTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTTAATTTT
65 CGAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAATTTT
8771778 TGTGTTTTAA
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
116 2 0.02
117 96 0.98
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (117 bp):
ACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAACTCATATTGC
GAGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAATTTTAAATTG
Found at i:8771810 original size:72 final size:72
Alignment explanation
Indices: 8771700--8772083 Score: 421
Period size: 72 Copynumber: 5.2 Consensus size: 72
8771690 AAGCCTTTTT
* * * * * *
8771700 ATTTTTGTTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGG
1 ATTTTTG-TGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
8771765 TATTTTTA
65 TATTTTCA
* **
8771773 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
8771838 AATTTCA
66 ATTTTCA
* ** * * * *
8771845 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCG
1 ATTTTTG-TGT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTG
8771910 AGGTATTTTCA
62 AGGTATTTTCA
* *
8771921 ATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTTTGTGTTT--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
8771986 GTAATTTCA
64 GTATTTTCA
* * ** * *
8771995 ATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTTTGTGTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
8772059 TATTTTCA
65 TATTTTCA
*
8772067 ATTTCTGT-TTTCAAAAA
1 ATTTTTGTGTTT-AAAAA
8772084 AAAAAAAAAA
Statistics
Matches: 264, Mismatches: 41, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
72 130 0.49
73 13 0.05
74 59 0.22
75 2 0.01
76 60 0.23
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (72 bp):
ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCA
Found at i:8771858 original size:315 final size:316
Alignment explanation
Indices: 8771277--8771880 Score: 1106
Period size: 316 Copynumber: 1.9 Consensus size: 316
8771267 TTAATTGTTG
8771277 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
8771342 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
*
8771407 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
8771472 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGT
196 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
8771537 TTGTC-AAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
261 TTGTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
8771592 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
8771657 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTTCAAAATCAA
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTG-TTTTTCAAAATCAA
*
8771722 CTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTTAATTTTTGTGTTTTA
130 CTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTA
*
8771787 ATTTCAACTCATATTGCGAGAGGTGAGTTG-AGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
195 ATTTCAACTCATATTACGAGAGGTGAG-TGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
8771851 G-TTGTCAAAAAAATCAACTCGTATTGCGAG
259 GTTTGTC-AAAAAATCAACTCATATTGCGAG
8771881 CGGCGAGTTG
Statistics
Matches: 279, Mismatches: 6, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
315 120 0.43
316 137 0.49
317 22 0.08
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (316 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTGTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
Found at i:8771981 original size:150 final size:146
Alignment explanation
Indices: 8771714--8772084 Score: 498
Period size: 150 Copynumber: 2.5 Consensus size: 146
8771704 TTGTTTTTTC
* * * *
8771714 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGT-CACGCTGAGGTATTTTTAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
* **
8771778 TGTGTTT--TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
66 TGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
8771841 TTCAATTTCTGTTGTCAAA
130 TTCAATTTCTGTTGTC--A
* * * *
8771860 AAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTATTTTCAATTT
*
8771925 TTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
65 TTGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
8771990 TTTCAATTTCTGTTTTCA
129 TTTCAATTTCTGTTGTCA
* ** * * *
8772008 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
8772072 TGTTTTCAAAAAA
66 TGTTTTCAAAAAA
8772085 AAAAAAAAAT
Statistics
Matches: 197, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
145 10 0.05
146 59 0.30
148 61 0.31
150 67 0.34
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (146 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
TGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGTTGTCA
Found at i:8772930 original size:34 final size:34
Alignment explanation
Indices: 8772886--8772989 Score: 135
Period size: 34 Copynumber: 3.1 Consensus size: 34
8772876 TTAAGCCCCC
8772886 AAAA-AAAACCTAACCCAAAAAAAAAAAAAAAAA
1 AAAAGAAAACCTAACCCAAAAAAAAAAAAAAAAA
* *
8772919 AAAAGAAAACCTAACCC-AAAAAAAAAAAGAAGA
1 AAAAGAAAACCTAACCCAAAAAAAAAAAAAAAAA
*
8772952 AAAAGAAAAACCTAA--CAAAAAAATAAAAAATAAA
1 AAAAG-AAAACCTAACCCAAAAAAA-AAAAAAAAAA
8772986 AAAA
1 AAAA
8772990 CCTAGCTACC
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
32 1 0.02
33 29 0.47
34 32 0.52
ACGTcount: A:0.79, C:0.12, G:0.04, T:0.05
Consensus pattern (34 bp):
AAAAGAAAACCTAACCCAAAAAAAAAAAAAAAAA
Found at i:8772971 original size:28 final size:28
Alignment explanation
Indices: 8772940--8772993 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
8772930 TAACCCAAAA
*
8772940 AAAAAAAGAAGAAAA-AGAAAAACCTAAC
1 AAAAAAAGAA-AAAATAAAAAAACCTAAC
*
8772968 AAAAAAATAAAAAATAAAAAAACCTA
1 AAAAAAAGAAAAAATAAAAAAACCTA
8772994 GCTACCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.78, C:0.09, G:0.06, T:0.07
Consensus pattern (28 bp):
AAAAAAAGAAAAAATAAAAAAACCTAAC
Found at i:8773284 original size:13 final size:13
Alignment explanation
Indices: 8773266--8773315 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
8773256 TATATACATC
8773266 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
8773279 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
8773292 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
8773307 ATAA-AAAAA
1 ATAATAAAAA
8773316 TTACATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 1 0.03
13 19 0.59
14 6 0.19
15 6 0.19
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:8773498 original size:29 final size:29
Alignment explanation
Indices: 8773442--8773498 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
8773432 CTCTTCTTTT
* *
8773442 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
8773471 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
8773499 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:8773763 original size:11 final size:11
Alignment explanation
Indices: 8773745--8773774 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8773735 GTGTATATTG
8773745 TATATATTATA
1 TATATATTATA
*
8773756 TTTATATTATA
1 TATATATTATA
8773767 TATATATT
1 TATATATT
8773775 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:8775396 original size:13 final size:14
Alignment explanation
Indices: 8775380--8775415 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8775370 CAATCTCATA
8775380 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
8775393 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
8775406 TCTC-ATTTCA
1 TCTCAATTTCA
8775416 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:8775405 original size:18 final size:19
Alignment explanation
Indices: 8775367--8775407 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
8775357 TGGTTCATGT
8775367 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
8775386 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
8775404 TTTC
1 TTTC
8775408 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:8775597 original size:39 final size:38
Alignment explanation
Indices: 8775530--8775664 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
8775520 ACCAATATGG
* * *
8775530 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* *
8775569 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAAA-GTTTG-
1 CACCCAGTGCCTCATCGG-CTAGCCGAAG-AAATATTTGA
* * * * *
8775607 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
8775648 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
8775665 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
38 17 0.23
39 36 0.49
40 7 0.09
41 14 0.19
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:8776306 original size:5 final size:5
Alignment explanation
Indices: 8776296--8776348 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
8776286 TTACTTATTT
* *
8776296 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
8776344 ATATA
1 ATATA
8776349 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:8776312 original size:12 final size:12
Alignment explanation
Indices: 8776295--8776350 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
8776285 TTTACTTATT
8776295 TATATAATATAA
1 TATATAATATAA
8776307 TATATAATATAATA
1 TATATAATAT-A-A
8776321 TACTATAATATAA
1 TA-TATAATATAA
*
8776334 TA-ATAATTTAA
1 TATATAATATAA
8776345 TATATA
1 TATATA
8776351 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:8777646 original size:2 final size:2
Alignment explanation
Indices: 8777639--8777667 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8777629 CTCTTGGTGT
8777639 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8777668 CAGTATTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8779469 original size:17 final size:17
Alignment explanation
Indices: 8779449--8779544 Score: 58
Period size: 17 Copynumber: 5.6 Consensus size: 17
8779439 TATTTTAACA
8779449 AATTTAATATTTAATTT
1 AATTTAATATTTAATTT
*
8779466 AATTTAATACTT-ATCTT
1 AATTTAATATTTAAT-TT
* * *
8779483 GA--TAGTATTTTA-TT
1 AATTTAATATTTAATTT
*
8779497 AATTTAATATTAAAGTGATT
1 AATTTAATATTTAA-T--TT
*
8779517 -ATCTTAATATTAAATTT
1 AAT-TTAATATTTAATTT
8779534 AATTTAATATT
1 AATTTAATATT
8779545 AAAGTGTTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
14 3 0.05
15 6 0.10
16 10 0.16
17 24 0.39
18 2 0.03
19 3 0.05
20 13 0.21
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.53
Consensus pattern (17 bp):
AATTTAATATTTAATTT
Found at i:8779523 original size:20 final size:19
Alignment explanation
Indices: 8779500--8779552 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 19
8779490 TTTTATTAAT
8779500 TTAATATTAAAGTGATTATC
1 TTAATATTAAAGTG-TTATC
8779520 TTAATATTAAA-T-TTAAT-
1 TTAATATTAAAGTGTT-ATC
8779537 TTAATATTAAAGTGTT
1 TTAATATTAAAGTGTT
8779553 TATCACTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 13 0.43
18 3 0.10
19 3 0.10
20 11 0.37
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.49
Consensus pattern (19 bp):
TTAATATTAAAGTGTTATC
Found at i:8779545 original size:17 final size:19
Alignment explanation
Indices: 8779493--8779549 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 19
8779483 GATAGTATTT
8779493 TATTAATTTAATATTAAAG
1 TATTAATTTAATATTAAAG
8779512 TGATT-ATCTTAATATTAAA-
1 T-ATTAAT-TTAATATTAAAG
8779531 T-TTAATTTAATATTAAAG
1 TATTAATTTAATATTAAAG
8779549 T
1 T
8779550 GTTTATCACT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 13 0.38
18 3 0.09
19 4 0.12
20 14 0.41
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (19 bp):
TATTAATTTAATATTAAAG
Found at i:8784006 original size:12 final size:12
Alignment explanation
Indices: 8783985--8784017 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8783975 AACAGAATTC
*
8783985 ATTATTATTATT
1 ATTATAATTATT
8783997 ATTATAATTATT
1 ATTATAATTATT
8784009 ATTATAATT
1 ATTATAATT
8784018 TCTAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTATAATTATT
Found at i:8785401 original size:22 final size:21
Alignment explanation
Indices: 8785376--8785422 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
8785366 TTGATATATG
* *
8785376 AAAATATTTTTTTTATTTTAAA
1 AAAATATTGTTTTT-TTATAAA
8785398 AAAATATTGTTTTTTTATAAA
1 AAAATATTGTTTTTTTATAAA
8785419 AAAA
1 AAAA
8785423 AGCATTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
AAAATATTGTTTTTTTATAAA
Found at i:8793508 original size:27 final size:27
Alignment explanation
Indices: 8793473--8793527 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
8793463 TGAAATAAAA
8793473 TTATTATTGGGATTTATTACGTAATTT
1 TTATTATTGGGATTTATTACGTAATTT
8793500 TTATTATTGGGATTTATTACGTAATTT
1 TTATTATTGGGATTTATTACGTAATTT
8793527 T
1 T
8793528 CTCTGATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.56
Consensus pattern (27 bp):
TTATTATTGGGATTTATTACGTAATTT
Found at i:8794756 original size:21 final size:21
Alignment explanation
Indices: 8794732--8794781 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
8794722 AAAATTAACT
* *
8794732 TTGACTGATTATTAATCAATG
1 TTGACTAACTATTAATCAATG
* *
8794753 TTGACTAACTGTTAATCGATG
1 TTGACTAACTATTAATCAATG
8794774 TTGACTAA
1 TTGACTAA
8794782 GCGTTGATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (21 bp):
TTGACTAACTATTAATCAATG
Found at i:8796549 original size:20 final size:19
Alignment explanation
Indices: 8796512--8796551 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8796502 TATTTATATG
**
8796512 ATTTGAAAAAAATCTACTT
1 ATTTGAAAAAAAAATACTT
8796531 ATTTGAAGAAAAAAATACTT
1 ATTTGAA-AAAAAAATACTT
8796551 A
1 A
8796552 CACTCCTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (19 bp):
ATTTGAAAAAAAAATACTT
Found at i:8799465 original size:24 final size:24
Alignment explanation
Indices: 8799407--8799466 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
8799397 ATTTAAGAAT
*
8799407 ATATACATAAGAAATATATAACTA
1 ATATACATAAAAAATATATAACTA
**
8799431 AT-GGCATTAAAAAATATAT-ACATA
1 ATATACA-TAAAAAATATATAAC-TA
8799455 ATATACATAAAA
1 ATATACATAAAA
8799467 TACCTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
23 4 0.14
24 22 0.79
25 2 0.07
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.28
Consensus pattern (24 bp):
ATATACATAAAAAATATATAACTA
Found at i:8800864 original size:29 final size:30
Alignment explanation
Indices: 8800808--8800868 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
8800798 TTTTGAAAAA
8800808 CAGAAATTAAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAGACTCAACTCAACTCTCG
*
8800838 CAGAAATTAAAAG-CTCAACTCACCTCTCG
1 CAGAAATTAAAAGACTCAACTCAACTCTCG
8800867 CA
1 CA
8800869 ATATGAGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.41, C:0.30, G:0.10, T:0.20
Consensus pattern (30 bp):
CAGAAATTAAAAGACTCAACTCAACTCTCG
Found at i:8800987 original size:14 final size:14
Alignment explanation
Indices: 8800964--8800998 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8800954 TGAGTTGATT
8800964 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
8800977 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
8800991 TTTGAAAA
1 TTTGAAAA
8800999 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:8801104 original size:78 final size:76
Alignment explanation
Indices: 8801020--8801210 Score: 265
Period size: 77 Copynumber: 2.5 Consensus size: 76
8801010 GTGACCCGAG
* * *
8801020 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTGAAAAATATAAATTGAAAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATT--AAAAATACCTCAG
* * * *
8801085 TGTGTGATCTAAA
64 CGCGTGAGCCAAA
* *
8801098 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTAAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTAAAAATACCTCAGC
*
8801163 GCGTGAGCCAAG
65 GCGTGAGCCAAA
8801175 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
8801211 TTTTGAAAGG
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
76 6 0.06
77 50 0.49
78 28 0.27
79 18 0.18
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTAAAAATACCTCAGCG
CGTGAGCCAAA
Found at i:8801184 original size:77 final size:78
Alignment explanation
Indices: 8801018--8801454 Score: 288
Period size: 75 Copynumber: 5.5 Consensus size: 78
8801008 ATGTGACCCG
* * *
8801018 AGGCTCAACTCACATCTCGCAATGTGAGTTGA-TTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATT-AAAAAATACCT
* * * *
8801082 CAGTGTGTGATCTA
65 CAGCGCGTGAGCCA
* * *
8801096 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATT-AAAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTAAAAAATACCTC
8801160 AGCGCGTGAGCCA
66 AGCGCGTGAGCCA
* *
8801173 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTG--A---A-AAA-T-AGAAA--T
* * *
8801238 AAATTGAAAATACCTC-GACGTGTGA-CCTG
53 TAA---AAAATACCTCAG-CGCGTGAGCC-A
* * * * * * *
8801267 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATT-GAAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTAAAAAATACCTC
* *
8801330 A--GCGTG-TCCTG
66 AGCGCGTGAGCC-A
* * *
8801341 AGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTGAAAAACAGAAATT-GAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTAAAAAATACCTC
* * **
8801405 A--GCATG-TCTTG
66 AGCGCGTGAGC-CA
** *
8801416 AGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
8801455 TTTTTGAAAA
Statistics
Matches: 294, Mismatches: 41, Indels: 51
0.76 0.11 0.13
Matches are distributed among these distances:
74 44 0.15
75 64 0.22
76 9 0.03
77 50 0.17
78 29 0.10
79 18 0.06
80 8 0.03
82 5 0.02
84 2 0.01
85 2 0.01
86 2 0.01
87 1 0.00
88 4 0.01
91 9 0.03
93 3 0.01
94 44 0.15
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTAAAAAATACCTC
AGCGCGTGAGCCA
Found at i:8801472 original size:245 final size:244
Alignment explanation
Indices: 8800640--8801478 Score: 740
Period size: 253 Copynumber: 3.4 Consensus size: 244
8800630 AACAGACATT
* * * * *
8800640 AAAAATAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCA--GCATG-TCCAAGGCTCAACTCACTTCTCGCAATATGAG
** * * ** * **
8800705 TTGA----TTTTTTG--AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTG
63 TTGATTTTTTTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCC
* * ** * *
8800764 GAGGTTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAAGACTCAA
128 GAGGCTCAACTCACATCTCACAATACGAGTTGATTTTTTGAAAAACAGAAATTGAAAA-A-T-AC
* * * **
8800827 CTCAACTCTCGCAGAAATTAAAAGCTCAACTCACCTCTCGCAATATGAGTTAAATTTTTTTG
190 CTC-A---GCG-TGTACCT-AAAGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTTG
* * *
8800889 AAAAAAAAACAGAAATTGAAAATAGCTCAGTACGTAAGCCAAGGCTCAACTCACTTCTCGTAATA
1 ----AAAAACAGAAATTGAAAATAGCTCAGCATGT---CCAAGGCTCAACTCACTTCTCGCAATA
* **
8800954 TGAGTTGA-----TTTTTG-AAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTG
59 TGAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTG
* ** * *
8801013 ACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTGAAAAATATAAATTGAAAAAAT
124 ACCCGAGGCTCAACTCACATCTCACAATACGAGTTGATTTTTTGAAAAACAGAAATTG-AAAAAT
* * *
8801078 ACCTCAGTGTGTGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
188 ACCTCAGCGTGT-ACCTAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTG
* * * * * *
8801136 AAAGATAGAAATTAAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCA--GCATG-TCCAAGGCTCAACTCACTTCTCGCAATATGAG
** * * *
8801201 TTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGACCT
63 TTGATTTTTTTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCC
* * * *
8801266 GAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACCT
128 GAGGCTCAACTCACATCTCACAATACGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAAATACCT
* * *
8801329 CAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTG
192 CAGCGTGTACCTAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTG
* ** * *
8801381 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATAGCTCAGCATGTC-CAAGGCTCAACTCACTTCTCGCAATATGAGTT
8801446 GATTTTTTTTTTTTGAAAAACAGAAATTGAAAA
65 GA--TTTTTTTTTTGAAAAACAGAAATTGAAAA
8801479 TACCTCAGCA
Statistics
Matches: 492, Mismatches: 73, Indels: 50
0.80 0.12 0.08
Matches are distributed among these distances:
242 1 0.00
243 88 0.18
245 90 0.18
247 24 0.05
248 38 0.08
249 82 0.17
250 7 0.01
251 2 0.00
252 7 0.01
253 130 0.26
254 18 0.04
255 1 0.00
256 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (244 bp):
AAAAACAGAAATTGAAAATAGCTCAGCATGTCCAAGGCTCAACTCACTTCTCGCAATATGAGTTG
ATTTTTTTTTTGAAAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCCGAG
GCTCAACTCACATCTCACAATACGAGTTGATTTTTTGAAAAACAGAAATTGAAAAATACCTCAGC
GTGTACCTAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTG
Found at i:8801485 original size:80 final size:75
Alignment explanation
Indices: 8801227--8801582 Score: 416
Period size: 80 Copynumber: 4.7 Consensus size: 75
8801217 AAGGCAGAAA
* ***
8801227 TTGAAAAACGGAAATTGAAAATACCTC-GACGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CCTGAGGCTCAACTCATTTCTCACAATA
*
8801291 CGAGTTGATTTTT
63 TGAGTTGATTTTT
* * ** *
8801304 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCACAATATGA
*
8801368 GTTTATTTTT
66 GTTGATTTTT
* *
8801378 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCACAATATGA
8801443 GTTGATTTTTTTTTT
66 GTTGA-----TTTTT
* * * *
8801458 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCACAATATGA
*
8801523 GTTGA--ATT
66 GTTGATTTTT
* * *
8801531 TTG-AAAACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTT
8801583 TGAACAGAAA
Statistics
Matches: 248, Mismatches: 24, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
72 44 0.18
73 5 0.02
74 40 0.16
75 58 0.23
76 25 0.10
77 4 0.02
80 72 0.29
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTT
Found at i:8801514 original size:155 final size:147
Alignment explanation
Indices: 8801227--8801582 Score: 437
Period size: 155 Copynumber: 2.4 Consensus size: 147
8801217 AAGGCAGAAA
* * ***
8801227 TTGAAAAACGGAAATTGAAAATACCTC-GACGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CTTGAGGCTCAACTCATTTCTCACAATA
* * * * *
8801291 CGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
63 CGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAACCT
* *
8801356 CTCGCAATATGAGTTTATTTTT
128 CTCGCAATATGAGTTGA--ATT
* *
8801378 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
8801443 GTTGATTTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAA
66 GTTGA-----TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAA
**
8801508 TTTCTCGCAATATGAGTTGAATT
125 CCTCTCGCAATATGAGTTGAATT
* *
8801531 TTG-AAAACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
8801583 TGAACAGAAA
Statistics
Matches: 179, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
149 31 0.17
151 30 0.17
152 47 0.26
153 5 0.03
154 8 0.04
155 58 0.32
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAACCTCTC
GCAATATGAGTTGAATT
Found at i:8801602 original size:49 final size:49
Alignment explanation
Indices: 8801536--8801631 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
8801526 GAATTTTGAA
* *
8801536 AACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTATCTTAAGGCTCAACTCATTTTG
*
8801585 AACAGAAATTGAAATTACCTCAACGTGTCTTAAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTATCTTAAGGCTCAACTCATTT
8801632 CTCGCAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTATCTTAAGGCTCAACTCATTTTG
Found at i:8801678 original size:121 final size:121
Alignment explanation
Indices: 8801464--8801703 Score: 390
Period size: 121 Copynumber: 2.0 Consensus size: 121
8801454 TTTTTTGAAA
* *
8801464 AACAGAAATTGAAAATACCTCAGCATGTCATGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCATAAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
8801529 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTATCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTTG
* * * *
8801585 AACAGAAATTGAAATTACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCATAAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
* * *
8801650 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTT
8801704 CTCGCAATAT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
121 109 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCATAAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTTG
Found at i:8801791 original size:79 final size:76
Alignment explanation
Indices: 8801585--8801803 Score: 277
Period size: 72 Copynumber: 2.9 Consensus size: 76
8801575 ACTCATTTTG
*
8801585 AACAGAAATTGAAATTACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
8801650 ----TTTTGAA
66 TTTTTTTTGAA
* *
8801657 AATAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
8801722 TTTTTTTTTTGAA
66 --TTTTTTTTGAA
* * * ** ** *
8801735 AGACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTG-
1 A-ACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
8801799 ATTTT
65 ATTTT
8801804 GAAAAAGTAG
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
72 62 0.49
76 4 0.03
78 9 0.07
79 52 0.41
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (76 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTTTTTGAA
Found at i:8801918 original size:73 final size:71
Alignment explanation
Indices: 8801826--8802020 Score: 257
Period size: 72 Copynumber: 2.7 Consensus size: 71
8801816 ATTAAAAGGT
* * * * *
8801826 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGA-AAACAAAAATTGAAAATACCTCAGCGTGC
*
8801891 CCTGAGGC
64 CCCGAGGC
* *
8801899 TCAACTCACCTCTCGCAATATGAGTTGATATTAGAACACAAAAATTGAAAATACCTCAGCGTGCC
1 TCAACTCACCTCTCGCAATATGAGTTGAT-TTTGAAAACAAAAATTGAAAATACCTCAGCGTGCC
8801964 CCGAGGC
65 CCGAGGC
* *
8801971 TCAACTCACCTCTCGCAATATGGGCTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTGAAAA
8802021 GGCTTAACTC
Statistics
Matches: 108, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
71 7 0.06
72 69 0.64
73 31 0.29
74 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGTGCCC
CGAGGC
Found at i:8801956 original size:278 final size:274
Alignment explanation
Indices: 8801278--8801992 Score: 816
Period size: 278 Copynumber: 2.6 Consensus size: 274
8801268 GGCTCAACTC
* * *
8801278 GCCTCTCACAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
1 GCCTCTCGCAATATGAGTTGA---TTTTGACAACAGAAATTGAAATTACCTCAACGTGTCCTGAG
* *
8801343 GCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGC
63 GCTCAACTCACCTCTCGCAATATGAGTTGA--TATTTG-AAAACAGAAATTGAAAATACCTCAGC
* * *
8801408 ATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTTTTGAAAAACAGAAAT
125 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTTTTTTTGAAAAACAGAAAT
* * ** *
8801473 TGAAAATACCTCAGCATGTCATGAGGCTCAACTAATTTCTCGCAATATGAGTTGAATTTTGAAAA
190 TGAAAATACCTCAGCATGCCACGAGGCTCAACTAACCTCTCGCAATATGAGCTGAATTTTGAAAA
*
8801538 CAGAAATTGAAATTACCTCA
255 CAGAAATTAAAATTACCTCA
* * *** * ** * * *
8801558 GCGTATCTTG-AGGCTCAACTCATTTTG--AACAGAAATTGAAATTACCTCAACGTGTCTTAAGG
1 GC--CTCTCGCAATATGAGTTGATTTTGACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGG
** * * *
8801620 CTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAATAGAAATTGAAATTACCTCAACGTG
64 CTCAACTCACCTCTCGCAATATGAGTTGATA-TTTGAAAACAGAAATTGAAAATACCTCAGCGTG
* *
8801684 TCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTTTTTTTGAAAGACAGAAATTGA
128 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTTTTTTTGAAAAACAGAAATTGA
* * * *
8801748 AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTG-ATTTTGAAAAAGT
193 AAATACCTCAGCATGCCACGAGGCTCAACTAACCTCTCGCAATATGAGCTGAATTTTG-AAAA-C
8801812 AGAAATTAAAAGGTTCAACC-CA
256 AGAAATTAAAA--TT--ACCTCA
*
8801834 -CCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGG
1 GCCTCTCGCAATATGAGTTGATT-TTGAC-AACAGAAATTGAAATTACCTCAACGTGTCCTGAGG
* * * *
8801898 CTCAACTCACCTCTCGCAATATGAGTTGATATTAGAACACAAAAATTGAAAATACCTCAGCGTGC
64 CTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAACAGAAATTGAAAATACCTCAGCGTGT
** **
8801963 CCCGAGGCTCAACTCACCTCTCGCAATATG
129 CTTGAGGCTCAACTCATTTCTCGCAATATG
8801993 GGCTGATTTT
Statistics
Matches: 358, Mismatches: 62, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
271 6 0.02
272 72 0.20
273 74 0.21
274 11 0.03
275 6 0.02
276 60 0.17
277 3 0.01
278 116 0.32
279 1 0.00
280 2 0.01
281 4 0.01
282 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (274 bp):
GCCTCTCGCAATATGAGTTGATTTTGACAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATATTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCT
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTTTTTTTGAAAAACAGAAATTGAAAA
TACCTCAGCATGCCACGAGGCTCAACTAACCTCTCGCAATATGAGCTGAATTTTGAAAACAGAAA
TTAAAATTACCTCA
Found at i:8801984 original size:199 final size:195
Alignment explanation
Indices: 8801631--8802194 Score: 677
Period size: 199 Copynumber: 2.8 Consensus size: 195
8801621 TCAACTCATT
* * *
8801631 TCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCA
1 TCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCA
* *
8801696 ACTCATTTCTCGCAATATGAGTTGAATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCG
65 ACTCACTTCTCGCAATATGAGTTG-A------TTTTGAAA-ACAAAAATTGAAAATACCTCAGCG
* *
8801761 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGG-
122 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAA-CAAAAATTAAAAGGC
8801825 TTCAACCCACC
186 TT-AACCCACC
*
8801836 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATT-TTGA-AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTC
* * *
8801901 AACTCACCTCTCGCAATATGAGTTGATATTAGAACACAAAAATTGAAAATACCTCAGCGTGCCCC
64 AACTCACTTCTCGCAATATGAGTTGAT-TTTGAAAACAAAAATTGAAAATACCTCAGCGTGCCCC
* *
8801966 GAGGCTCAACTCACCTCTCGCAATATGGGCTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
128 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAACAAAAATTAAAAGGCTTAACCC
8802031 ACC
193 ACC
* * * * * * * ** * *
8802034 TCTTGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
1 TCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAA
* * * * * **
8802097 CCCACTTCTCGCAATATGAGTCGATTTTGAAAAC-AAAATTAAAAATACCTCATCGTGTCTTGAG
66 CTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAG
* *
8802161 GCTCAACTCATCTCTCGCAATATGAGTTGATTTT
131 GCTCAACTCACCTCTCGCAATATGAGCTGATTTT
8802195 TCTTGAAAAG
Statistics
Matches: 318, Mismatches: 37, Indels: 21
0.85 0.10 0.06
Matches are distributed among these distances:
192 56 0.18
193 7 0.02
194 55 0.17
195 1 0.00
196 2 0.01
197 3 0.01
198 32 0.10
199 74 0.23
200 5 0.02
204 3 0.01
205 22 0.07
206 58 0.18
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (195 bp):
TCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAA
CTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAG
GCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAACAAAAATTAAAAGGCTTAACCCACC
Found at i:8802123 original size:122 final size:123
Alignment explanation
Indices: 8801895--8802140 Score: 338
Period size: 122 Copynumber: 2.0 Consensus size: 123
8801885 TCGTGTCCTG
** * *
8801895 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTAGAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATATTAGAACACAAAAACTAAAAATACCTCAGCG
*
8801960 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGGGCTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACCCACCTCTCGCAATATGGGCTGATTTTG-AAAAC-AAAATTAAA
* * * *
8802020 AGGCTTAACTCACCTCTTGCAATATGAGTCAAT-TTA-AA-ACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATATTAGAACACAAAAACTAAAAATACCTCAGCG
* *
8802082 TGCCCCGAGGCTCAACCCACTTCTCGCAATATGAG-TCGATTTTGAAAACAAAATTAAA
66 TGCCCCGAGGCTCAACCCACCTCTCGCAATATGGGCT-GATTTTGAAAACAAAATTAAA
8802140 A
1 A
8802141 ATACCTCATC
Statistics
Matches: 109, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
120 10 0.09
121 6 0.06
122 59 0.54
123 2 0.02
124 3 0.03
125 29 0.27
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATATTAGAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACCCACCTCTCGCAATATGGGCTGATTTTGAAAACAAAATTAAA
Found at i:8802162 original size:70 final size:70
Alignment explanation
Indices: 8802020--8802194 Score: 203
Period size: 70 Copynumber: 2.5 Consensus size: 70
8802010 AAAAATTAAA
* * * * *
8802020 AGGCTTAACTCACCTCTTGCAATATGAGTC-AATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTCGATTTTAAAACATAAACTAAAAATACCTCAGCGTG
8802084 CCCCG
66 CCCCG
* * *
8802089 AGGCTCAACCCACTTCTCGCAATATGAGTCGATTTTGAAAACA-AAATTAAAAATACCTCATCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTCGATTTT-AAAACATAAACTAAAAATACCTCAGCGT
* **
8802153 GTCTTG
65 GCCCCG
*
8802159 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTCGATTTT
8802195 TCTTGAAAAG
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
69 27 0.30
70 57 0.63
71 6 0.07
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCGATTTTAAAACATAAACTAAAAATACCTCAGCGTG
CCCCG
Found at i:8803096 original size:7 final size:7
Alignment explanation
Indices: 8803064--8803095 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
8803054 TCCCTCTCTC
8803064 TTTTTCT
1 TTTTTCT
8803071 TTTTTCT
1 TTTTTCT
8803078 TTTTTCT
1 TTTTTCT
8803085 TTTTT-T
1 TTTTTCT
8803091 TTTTT
1 TTTTT
8803096 TAAGATGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTCT
Found at i:8810408 original size:12 final size:12
Alignment explanation
Indices: 8810391--8810421 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8810381 TATGCAATGT
8810391 ATGAATGAATAC
1 ATGAATGAATAC
*
8810403 ATGAATGAATGC
1 ATGAATGAATAC
8810415 ATGAATG
1 ATGAATG
8810422 TTAAATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (12 bp):
ATGAATGAATAC
Found at i:8814359 original size:15 final size:15
Alignment explanation
Indices: 8814339--8814390 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
8814329 ACACACGGTC
8814339 GTGTCACCTGGCCGT
1 GTGTCACCTGGCCGT
* *
8814354 GTGTCACAC--ACGGT
1 GTGTCAC-CTGGCCGT
8814368 CGTGTCACCTGGCCGT
1 -GTGTCACCTGGCCGT
8814384 GTGTCAC
1 GTGTCAC
8814391 ACACGGTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.12, C:0.33, G:0.31, T:0.25
Consensus pattern (15 bp):
GTGTCACCTGGCCGT
Found at i:8814364 original size:30 final size:30
Alignment explanation
Indices: 8814329--8814397 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
8814319 GATAAAGGGG
8814329 ACACACGGTCGTGTCACCTGGCCGTGTGTC
1 ACACACGGTCGTGTCACCTGGCCGTGTGTC
8814359 ACACACGGTCGTGTCACCTGGCCGTGTGTC
1 ACACACGGTCGTGTCACCTGGCCGTGTGTC
8814389 ACACACGGT
1 ACACACGGT
8814398 TGAGACACAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.16, C:0.33, G:0.29, T:0.22
Consensus pattern (30 bp):
ACACACGGTCGTGTCACCTGGCCGTGTGTC
Found at i:8815874 original size:19 final size:19
Alignment explanation
Indices: 8815847--8815891 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8815837 AATAAGTACG
*
8815847 ATAATAAAT-ATAATGATAT
1 ATAAAAAATGATAAT-ATAT
*
8815866 ATAAAAAATGATACTATAT
1 ATAAAAAATGATAATATAT
8815885 ATAAAAA
1 ATAAAAA
8815892 GGTATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
ATAAAAAATGATAATATAT
Found at i:8816896 original size:13 final size:14
Alignment explanation
Indices: 8816878--8816906 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8816868 GATTAACTTT
8816878 ATAAATATTTT-TA
1 ATAAATATTTTCTA
8816891 ATAAATATTTTCTA
1 ATAAATATTTTCTA
8816905 AT
1 AT
8816907 CCATTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
ATAAATATTTTCTA
Found at i:8817581 original size:9 final size:10
Alignment explanation
Indices: 8817561--8817591 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
8817551 AATAAATTCG
8817561 AAAAGATAAA
1 AAAAGATAAA
8817571 AAAAGATAAA
1 AAAAGATAAA
8817581 AAAAG-TAAA
1 AAAAGATAAA
8817590 AA
1 AA
8817592 GACCTTCGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAAGATAAA
Found at i:8819020 original size:21 final size:21
Alignment explanation
Indices: 8818976--8819070 Score: 124
Period size: 21 Copynumber: 4.7 Consensus size: 21
8818966 AGTACACGTT
8818976 AACAGAAGCTCG-AA-AGCT-
1 AACAGAAGCTCGTAAGAGCTG
*
8818994 AACAGAAGCTCGCAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
* * *
8819015 AACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTG
8819036 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
8819057 AACAGAAACTCGTA
1 AACAGAAGCTCGTA
8819071 TAAGTTAAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
18 12 0.18
19 2 0.03
20 4 0.06
21 48 0.73
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:8819093 original size:42 final size:42
Alignment explanation
Indices: 8819007--8819106 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
8818997 AGAAGCTCGC
* ***
8819007 AAGAGCTGAACAGAAACTCATAAGAGTTGAACAGAAGCTCGT
1 AAGAGCTGAACAGAAACTCATAAGAGTTAAACAGAAGAAAGT
* *
8819049 AAGAGCTGAACAGAAACTCGTATA-AGTTAAACGGAAGAAAGT
1 AAGAGCTGAACAGAAACTCATA-AGAGTTAAACAGAAGAAAGT
*
8819091 AAGAGCTAAACAGAAA
1 AAGAGCTGAACAGAAA
8819107 GTAAAACACG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 49 0.98
43 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.23, T:0.15
Consensus pattern (42 bp):
AAGAGCTGAACAGAAACTCATAAGAGTTAAACAGAAGAAAGT
Found at i:8820747 original size:11 final size:12
Alignment explanation
Indices: 8820719--8820747 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8820709 TATTAATATA
8820719 TAATTTAGTTCT
1 TAATTTAGTTCT
8820731 TAATTTAGTTC-
1 TAATTTAGTTCT
8820742 TAATTT
1 TAATTT
8820748 GTTTTAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (12 bp):
TAATTTAGTTCT
Found at i:8820856 original size:20 final size:20
Alignment explanation
Indices: 8820833--8820870 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8820823 AGTCCCATTT
*
8820833 TTTATTTTTTTGTTTTAATA
1 TTTATTTTTATGTTTTAATA
8820853 TTTATTTTTATGTTTTAA
1 TTTATTTTTATGTTTTAA
8820871 ATGCATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTTTTATGTTTTAATA
Found at i:8820878 original size:19 final size:20
Alignment explanation
Indices: 8820836--8820878 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
8820826 CCCATTTTTT
* **
8820836 ATTTTTTTGTTTTAATATTT
1 ATTTTTATGTTTTAATATGC
8820856 ATTTTTATGTTTTAA-ATGC
1 ATTTTTATGTTTTAATATGC
8820875 ATTT
1 ATTT
8820879 GATTTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.67
Consensus pattern (20 bp):
ATTTTTATGTTTTAATATGC
Found at i:8820888 original size:25 final size:23
Alignment explanation
Indices: 8820852--8820897 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
8820842 TTGTTTTAAT
*
8820852 ATTTATTTTTATGTTTTAAATGC
1 ATTTATTTTTATATTTTAAATGC
8820875 ATTTGATTTATTATATTTTAAAT
1 ATTT-ATTT-TTATATTTTAAAT
8820898 TTTTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 4 0.20
25 12 0.60
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
ATTTATTTTTATATTTTAAATGC
Found at i:8825946 original size:20 final size:21
Alignment explanation
Indices: 8825914--8825957 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
8825904 CTTGTATTTT
*
8825914 TATGTAAATATATTTAT-ACA
1 TATGTAAATATATATATCACA
8825934 TATGT-AATCATATATATCACA
1 TATGTAAAT-ATATATATCACA
8825955 TAT
1 TAT
8825958 ATTACGAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 12 0.57
21 6 0.29
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (21 bp):
TATGTAAATATATATATCACA
Found at i:8832552 original size:16 final size:15
Alignment explanation
Indices: 8832504--8832560 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8832494 TAAAAAAATG
* * *
8832504 AAAAAATCAGTGTTG
1 AAAAAATAAGTATTA
* *
8832519 AAAATATAAATATTA
1 AAAAAATAAGTATTA
8832534 AAAAAATAAGTATTA
1 AAAAAATAAGTATTA
8832549 AAAAAATTAAGT
1 AAAAAA-TAAGT
8832561 GTTGACTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
15 29 0.85
16 5 0.15
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
AAAAAATAAGTATTA
Found at i:8832939 original size:26 final size:26
Alignment explanation
Indices: 8832860--8832939 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
8832850 TTTCAATTAA
* *
8832860 TAAATTAAAAATATAATAACAAATAT
1 TAAATTAAAAATATAATAACAAACAC
* * * *
8832886 TACATTAAAAACAATATTAATAGTAACAC
1 TAAATTAAAAA-TATAATAACA--AACAC
8832915 TAAATTAAAAATATAATAACAAACA
1 TAAATTAAAAATATAATAACAAACA
8832940 TTCAATTGGA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
26 14 0.34
27 7 0.17
28 7 0.17
29 13 0.32
ACGTcount: A:0.62, C:0.09, G:0.01, T:0.28
Consensus pattern (26 bp):
TAAATTAAAAATATAATAACAAACAC
Found at i:8833004 original size:2 final size:2
Alignment explanation
Indices: 8832993--8833031 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
8832983 ATTTAAATTC
8832993 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8833032 TGCTTTAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8835499 original size:18 final size:18
Alignment explanation
Indices: 8835476--8835510 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8835466 TATTGAAAAG
8835476 TAAATATTTTATTATATT
1 TAAATATTTTATTATATT
8835494 TAAATATTTTATTATAT
1 TAAATATTTTATTATAT
8835511 CAATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TAAATATTTTATTATATT
Found at i:8836277 original size:2 final size:2
Alignment explanation
Indices: 8836270--8836300 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8836260 GAAAGTGGAA
8836270 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8836301 TAAGAATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8838448 original size:25 final size:23
Alignment explanation
Indices: 8838392--8838448 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
8838382 GATAATAAAG
8838392 AACGCATAACAAATAAAAATCAAT
1 AACG-ATAACAAATAAAAATCAAT
*
8838416 AACTATAACAAGATAAACAAAT-AAT
1 AACGATAACAA-AT-AA-AAATCAAT
8838441 AACGATAA
1 AACGATAA
8838449 ATACGAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 5 0.18
25 12 0.43
26 4 0.14
ACGTcount: A:0.63, C:0.14, G:0.05, T:0.18
Consensus pattern (23 bp):
AACGATAACAAATAAAAATCAAT
Found at i:8838679 original size:3 final size:3
Alignment explanation
Indices: 8838673--8838817 Score: 57
Period size: 3 Copynumber: 48.3 Consensus size: 3
8838663 AAAAGAAAAT
* * *
8838673 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA A-A A-A CACA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * *
8838717 ATA ATA ATGA A-A AGGT- ATT ATA AT- ATA GTA GTA ATA ATG ATG ATA
1 ATA ATA AT-A ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
8838762 ATA GTG GTA TTA GTA ATA ATA ATA ATA ATA GAAA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
8838808 TTA AAA ATA A
1 ATA ATA ATA A
8838818 CACTCTCTCC
Statistics
Matches: 109, Mismatches: 24, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
2 8 0.07
3 95 0.87
4 6 0.06
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8838800 original size:19 final size:18
Alignment explanation
Indices: 8838776--8838817 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
8838766 TGGTATTAGT
*
8838776 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
8838795 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
8838813 AATAA
1 AATAA
8838818 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:8839209 original size:22 final size:22
Alignment explanation
Indices: 8839181--8839236 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
8839171 TTTGTCGGCA
*
8839181 AGTGGAGTGGTT-GGGATGGTTT
1 AGTGGAGTGGTTAGAG-TGGTTT
*
8839203 AGTGGAGTAGTTAGAGTGGTTT
1 AGTGGAGTGGTTAGAGTGGTTT
8839225 AGTGGAGTGGTT
1 AGTGGAGTGGTT
8839237 TAGTGGGGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.46, T:0.36
Consensus pattern (22 bp):
AGTGGAGTGGTTAGAGTGGTTT
Found at i:8839234 original size:13 final size:13
Alignment explanation
Indices: 8839181--8839249 Score: 64
Period size: 13 Copynumber: 5.9 Consensus size: 13
8839171 TTTGTCGGCA
8839181 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
8839193 -G-GGA-TGGTTT
1 AGTGGAGTGGTTT
*
8839203 AGTGGAGTAG-TT
1 AGTGGAGTGGTTT
8839215 A---GAGTGGTTT
1 AGTGGAGTGGTTT
8839225 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
8839238 AGTGGGGTGGTT
1 AGTGGAGTGGTT
8839250 GGAGTGAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
9 8 0.17
10 8 0.17
11 2 0.04
12 6 0.13
13 22 0.48
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:8839373 original size:16 final size:15
Alignment explanation
Indices: 8839332--8839376 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8839322 CTTTGAAGGT
** *
8839332 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
8839347 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
8839362 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
8839377 CCCGGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:8840132 original size:206 final size:207
Alignment explanation
Indices: 8839747--8840213 Score: 839
Period size: 206 Copynumber: 2.3 Consensus size: 207
8839737 CAAATATGCT
* * **
8839747 TCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTTGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
8839812 ATCTGAAGGCCAGATCTGCTATGTAATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTT
66 ATCTGAAGGCCAGATCTGCTATGTAATCTGCTCTCCATCGAAATGGAGATGCCAGACTTCGACTT
8839877 ATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCC
131 ATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCC
8839942 AAATCAGCTATG
196 AAATCAGCTATG
8839954 TCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
8840019 ATCTGAAGGCCAGATCTGCTATGT-ATCTGCTCTCCATTGAAATGGAGATGCCAGACTTCGACTT
66 ATCTGAAGGCCAGATCTGCTATGTAATCTGCTCTCCATCGAAATGGAGATGCCAGACTTCGACTT
*
8840083 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCC
131 ATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCC
8840148 AAATCAGCTATG
196 AAATCAGCTATG
* *
8840160 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC-TGCTT
1 TCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTGCTT
8840214 TAGCCAGATC
Statistics
Matches: 251, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
205 5 0.02
206 161 0.64
207 85 0.34
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (207 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAAGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTAATCTGCTCTCCATCGAAATGGAGATGCCAGACTTCGACTT
ATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCC
AAATCAGCTATG
Found at i:8843269 original size:38 final size:39
Alignment explanation
Indices: 8843219--8843552 Score: 341
Period size: 46 Copynumber: 7.9 Consensus size: 39
8843209 CTGATATTAA
*
8843219 ATGTGTAAGACCATGGTTAAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
8843258 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
* *
8843301 AAATGTGTAAGACCATGATTGAAAGATACCATGGAAACCTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
8843342 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
8843385 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
8843426 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
8843469 AAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
*
8843517 ATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8843553 GTGACATGAA
Statistics
Matches: 259, Mismatches: 10, Indels: 45
0.82 0.03 0.14
Matches are distributed among these distances:
38 104 0.40
41 4 0.02
43 6 0.02
46 144 0.56
48 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:8843325 original size:46 final size:46
Alignment explanation
Indices: 8843258--8843642 Score: 473
Period size: 46 Copynumber: 8.7 Consensus size: 46
8843248 TGGCAACCTG
8843258 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
8843304 TGTGTAAGACCATGATTGAAAGATACCATGGAAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
8843342 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
8843388 TGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C---T-TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
8843426 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
8843472 TGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
8843518 TGTGTAAGACCATGGTTGAAAGATACCATAGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
8843564 AGAATAAG-CCTATGGTTGAAAGATACAATGGCAACATGACA-GAAAA
1 TGTGTAAGACC-ATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
8843610 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
8843643 TCACGTCAAA
Statistics
Matches: 298, Mismatches: 22, Indels: 38
0.83 0.06 0.11
Matches are distributed among these distances:
38 68 0.23
39 1 0.00
41 4 0.01
42 2 0.01
43 4 0.01
45 4 0.01
46 213 0.71
47 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:8843344 original size:84 final size:84
Alignment explanation
Indices: 8843209--8843598 Score: 575
Period size: 84 Copynumber: 4.5 Consensus size: 84
8843199 AGTGTGCTCT
* *
8843209 CTGATATTAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
8843274 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
* *
8843293 CTGATATGAAATGTGTAAGACCATGATTGAAAGATACCATGGAAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
8843358 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
8843377 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
8843442 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
8843461 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
*
8843526 ACCATGGTTGAAAGATACCATAGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
8843553 GTGACATGAAAAGAATAAG-CCTATGGTTGAAAGATACAATGGCAAC
1 CTGATATGAAATGTGTAAGACC-ATGGTTGAAAGATACCATGGCAAC
8843599 ATGACAGAAA
Statistics
Matches: 280, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
84 206 0.74
89 1 0.00
91 2 0.01
92 71 0.25
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Done.