Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 270 of 345
Found at i:80413516 original size:40 final size:40
Alignment explanation
Indices: 80413377--80413522 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
80413367 CGGAATACAA
** *
80413377 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAAC
* * * *
80413417 CCGGATAGAACGACTC-GTACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAAC
* * *
80413457 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAAC
***
80413497 CCGGATATAATTTCCAGCACAATTGC
1 CCGGATATAACCACCAGCACAATTGC
80413523 TCATGCACAC
Statistics
Matches: 86, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 84 0.98
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAAC
Found at i:80421374 original size:40 final size:40
Alignment explanation
Indices: 80421329--80421458 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
80421319 CGGAATACAA
80421329 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
80421369 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
80421409 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
80421449 CCGGATATAA
1 CCGGATATAA
80421459 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:80428861 original size:29 final size:29
Alignment explanation
Indices: 80428826--80428899 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
80428816 GTTGTGAGAT
* *
80428826 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
80428855 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
80428884 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80428900 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:80436654 original size:29 final size:29
Alignment explanation
Indices: 80436619--80436692 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
80436609 GTTGTGAGAT
* *
80436619 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
80436648 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
80436677 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80436693 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:80440438 original size:43 final size:44
Alignment explanation
Indices: 80440372--80440544 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 44
80440362 AGCTCGTACA
** *
80440372 ATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGTAATCAAATATCG
* * * * *
80440415 GTGCCACTGTCCCAGACAG-GGTCTTATATGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGTAATCAAATATCG
* * *
80440457 ATGCCAATATCCTATACA-TGGTCTTACACGTAAATCTAAA-ATCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGT-AATC-AAATATCG
* * * *
80440501 ATGCCAATGTTCCAGA-TGTGGTCTTACACATAATCACATATCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGTAATCAAATATCG
80440544 A
1 A
80440545 AATTCTATGT
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
42 26 0.25
43 46 0.45
44 30 0.29
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACAGTGGTCTTACACGTAATCAAATATCG
Found at i:80445140 original size:28 final size:28
Alignment explanation
Indices: 80445103--80445163 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
80445093 AAGTCTACAT
*
80445103 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCA-TAGGCCCTAATC
* *
80445131 TCATTCATATGGCCCATCGGCCCTAATC
1 ACATTCATATGGCCCATAGGCCCTAATC
80445159 ACATT
1 ACATT
80445164 TATAGTCATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATAGGCCCTAATC
Found at i:80445405 original size:16 final size:16
Alignment explanation
Indices: 80445384--80445418 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
80445374 ACCAAACTTC
**
80445384 CAGCTTTTCGGCATTT
1 CAGCTTTTCAACATTT
80445400 CAGCTTTTCAACATTT
1 CAGCTTTTCAACATTT
80445416 CAG
1 CAG
80445419 GATTTGTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (16 bp):
CAGCTTTTCAACATTT
Found at i:80451199 original size:32 final size:32
Alignment explanation
Indices: 80451149--80451217 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
80451139 TGGTCTCATT
*
80451149 ATAC-TTCCTTGAATCATATCCAGATTCAGCA
1 ATACATTCCTTGAACCATATCCAGATTCAGCA
80451180 ATACATTCCTTGAACCATATCCAGATTCAGCA
1 ATACATTCCTTGAACCATATCCAGATTCAGCA
80451212 ATACAT
1 ATACAT
80451218 ACTCCCTTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (32 bp):
ATACATTCCTTGAACCATATCCAGATTCAGCA
Found at i:80452149 original size:16 final size:17
Alignment explanation
Indices: 80452118--80452150 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80452108 AATAAGTGTC
80452118 AAATAGTTTCAAGCACAA
1 AAATAGTTTC-AGCACAA
80452136 AAATAGTTTC-GCACA
1 AAATAGTTTCAGCACA
80452151 TTGTATTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
AAATAGTTTCAGCACAA
Found at i:80458147 original size:40 final size:40
Alignment explanation
Indices: 80458039--80458248 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80458029 CGGGATTTAA
* * * * *
80458039 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80458079 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80458119 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80458159 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80458199 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80458239 CCGGATATAT
1 CCGGATATAT
80458249 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80462403 original size:40 final size:40
Alignment explanation
Indices: 80462295--80462504 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80462285 CGGGATTTAA
* * * * *
80462295 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80462335 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80462375 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80462415 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80462455 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80462495 CCGGATATAT
1 CCGGATATAT
80462505 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80470537 original size:40 final size:40
Alignment explanation
Indices: 80470429--80470638 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80470419 CGGGATTTAA
* * * * *
80470429 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80470469 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470509 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470549 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470589 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80470629 CCGGATATAT
1 CCGGATATAT
80470639 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80477528 original size:46 final size:45
Alignment explanation
Indices: 80477428--80477656 Score: 205
Period size: 46 Copynumber: 5.0 Consensus size: 45
80477418 ATGTAACCGT
* * *
80477428 GCCGATGCATGTGCCAAACATGTCTTACACTAGC--ACATCTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCG-A
* *
80477472 GCCGACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGA
* * *
80477517 GCCCGATGCATGTCCCAGACATGTCTTACCCTGGCTATCATACT-GTG
1 G-CCGATGCATGTCCCAGACATGTCTTACACTGGCTAACAT-CTCG-A
* * * *** * *
80477564 GCTGATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGA
*
80477609 TGCCGATACCATGTCCCAGACATGATCTTACACTGTG-TAACATCTCGA
1 -GCCGAT-GCATGTCCCAGACATG-TCTTACACTG-GCTAACATCTCGA
80477657 AATAGGGCCT
Statistics
Matches: 147, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
44 29 0.20
45 4 0.03
46 81 0.55
47 17 0.12
48 15 0.10
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGA
Found at i:80484593 original size:80 final size:80
Alignment explanation
Indices: 80484459--80484610 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
80484449 AAATTGAATG
*
80484459 ATATCCGGGCTAAGCCCTGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGCCCTGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
80484524 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * ** *
80484539 ATATCCGGGCTAAGACCC-GAAGGCATTTATGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCTGAAGACAATTATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
80484602 CATTTGTGC
64 CAATTGTGC
80484611 ACATGCTTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
79 1 0.02
80 59 0.94
81 3 0.05
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGCCCTGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:80484606 original size:40 final size:40
Alignment explanation
Indices: 80484459--80484603 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
80484449 AAATTGAATG
* *
80484459 ATATCCGGGCTAAG-CCCTGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCC-GAAGGCAATTATGC-GAGTAATT
* * * ***
80484499 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTAATT
* *
80484539 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTAATT
*
80484579 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
80484604 TTTGTGCACA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 84 0.97
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTAATT
Found at i:80484624 original size:40 final size:39
Alignment explanation
Indices: 80484497--80484626 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
80484487 ATGCTGGAAA
* * *
80484497 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
80484538 -TATATCCGGGCTAAGACCCGAAGGCATTTATGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
80484576 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
80484617 TTATATCCGG
1 TTATATCCGG
80484627 TTATATTCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:80486896 original size:40 final size:40
Alignment explanation
Indices: 80486851--80487018 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
80486841 CGGAATATAA
*
80486851 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * **
80486891 CCGGATAGAATG-ACTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
80486931 CCGAATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
80486971 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
80487011 CCGGATAT
1 CCGGATAT
80487019 CATTCAATTT
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 98 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80487001 original size:80 final size:80
Alignment explanation
Indices: 80486867--80487018 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
80486857 ATAAGCATGT
* *
80486867 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCATGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCATGAATGCCTTCGGGGCTTAGCC
80486932 CGAATATAGCCACTA
66 CGAATATAGCCACTA
* * ** *
80486947 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCAT-AATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCATGAA-TGCCTTCGGGGCTTAG
*
80487010 CCCGGATAT
64 CCCGAATAT
80487019 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCATGAATGCCTTCGGGGCTTAGCC
CGAATATAGCCACTA
Found at i:80487912 original size:55 final size:53
Alignment explanation
Indices: 80487810--80488058 Score: 240
Period size: 55 Copynumber: 4.7 Consensus size: 53
80487800 GGGCTGTCAC
* *
80487810 ACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGCAAGG-T
* ** * *
80487865 ATCATGTAAGACCATTTCAAGACATGGCATTGATAAGTTACAATAAGGCAAAGGT
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC-AAGGT
* * * *
80487920 CCCATGTAAGACCATGCCAAGGCATGTCATTGGTGAG-TTCATAAGGCAAGGCT
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAGG-T
* * *
80487973 ACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAAAAGG--A--T
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAGGT
* * * *
80488022 ACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
80488059 GTACCCATGT
Statistics
Matches: 163, Mismatches: 26, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
52 5 0.03
53 43 0.26
54 17 0.10
55 59 0.36
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
ACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAGGT
Found at i:80488010 original size:108 final size:109
Alignment explanation
Indices: 80487811--80488060 Score: 302
Period size: 108 Copynumber: 2.4 Consensus size: 109
80487801 GGCTGTCACA
*
80487811 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
80487876 CCATTTCAAGACATGGCATTGATAAGTTACAATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACAA-AAGGCAAAGGTC
* * **
80487921 CCATGTAAGACCATGCCAAGGCATGTC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* * *
80487983 ACCATGTCAAGACATGGCAATGGTAAGTTTCAAAAGG---A--TA
65 ACCATGTCAAGACATGGCAATGATAAGTTACAAAAGGCAAAGGTC
* * *
80488023 CCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
80488061 ACCCATGTAT
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
102 29 0.24
103 2 0.02
104 1 0.01
107 7 0.06
108 49 0.40
109 7 0.06
110 26 0.21
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACAAAAGGCAAAGGTC
Found at i:80488271 original size:16 final size:16
Alignment explanation
Indices: 80488250--80488280 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80488240 ATAAATTTGA
80488250 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80488266 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80488281 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80499631 original size:93 final size:93
Alignment explanation
Indices: 80499519--80499690 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80499509 GCCCATAAGT
* *
80499519 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80499584 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
80499612 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80499677 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
80499691 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:80499686 original size:46 final size:46
Alignment explanation
Indices: 80499511--80499686 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
80499501 TGTAACCCGC
* *
80499511 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
80499557 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
80499603 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
80499650 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80499687 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80502095 original size:15 final size:15
Alignment explanation
Indices: 80502071--80502148 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
80502061 AGGAAACCGA
80502071 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
80502086 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
80502100 AATAAAGAATTCC-AG
1 -ATAAAGAAATCCAAG
* *
80502115 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
80502131 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
80502146 ATA
1 ATA
80502149 TGATACTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
14 2 0.04
15 49 0.94
16 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80502104 original size:30 final size:30
Alignment explanation
Indices: 80502069--80502148 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
80502059 CAAGGAAACC
*
80502069 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAGAAATCCAAGATAAAGAAATCCA
* *
80502099 GAATAAAGAATTCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAATCCA
* *
80502129 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
80502149 TGATACTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 2 0.05
30 38 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAATCCA
Found at i:80507034 original size:40 final size:40
Alignment explanation
Indices: 80506946--80507035 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
80506936 TTGCTGGAAA
*
80506946 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
* * *
80506986 CTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGG
80507026 TTATATCCGG
1 TTATATCCGG
80507036 TTGTATTCCG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 4 0.10
40 38 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGG
Found at i:80511444 original size:46 final size:45
Alignment explanation
Indices: 80511394--80511569 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
80511384 TGTTTGGGCA
80511394 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
80511440 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
80511487 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
80511533 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80511570 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:80511549 original size:93 final size:93
Alignment explanation
Indices: 80511390--80511562 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
80511380 AGGATGTTTG
* *
80511390 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80511455 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
80511483 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80511548 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
80511563 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:80515141 original size:30 final size:30
Alignment explanation
Indices: 80515107--80515165 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
80515097 TTTAATACAG
*
80515107 ACTTTGGAAAAATTACATTTTTGCCCCTAA
1 ACTTTGGAAAAATTACACTTTTGCCCCTAA
* * *
80515137 ACTTTTGCATAATTACACTTTTGCCCCTA
1 ACTTTGGAAAAATTACACTTTTGCCCCTA
80515166 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (30 bp):
ACTTTGGAAAAATTACACTTTTGCCCCTAA
Found at i:80519421 original size:39 final size:39
Alignment explanation
Indices: 80519367--80519517 Score: 230
Period size: 39 Copynumber: 3.9 Consensus size: 39
80519357 TGCATGATAT
*
80519367 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
*
80519406 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* * * *
80519445 TGGGAATATATCTGGACTTGAAGTCCGCAGGGTATGTGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* *
80519484 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTA
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTA
80519518 CGTGCTGGAA
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
Found at i:80537121 original size:42 final size:43
Alignment explanation
Indices: 80537062--80537164 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
80537052 CATCTATTAT
*
80537062 GAACTCGGACCTCTCAACAAG-GTCAATTGC-CACATATATCAC
1 GAACTCGGACCACTCAACAAGTGTCAATT-CTCACATATATCAC
* * ** *
80537104 GAACTTGGACCACTCAACAAGTTTGGATTCTCACATATATCAT
1 GAACTCGGACCACTCAACAAGTGTCAATTCTCACATATATCAC
*
80537147 GAACTCGGACCGCTCAAC
1 GAACTCGGACCACTCAAC
80537165 GAGCTCAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 20 0.39
43 31 0.61
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
GAACTCGGACCACTCAACAAGTGTCAATTCTCACATATATCAC
Found at i:80540625 original size:35 final size:35
Alignment explanation
Indices: 80540586--80540658 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
80540576 GGTATGTGAT
80540586 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80540621 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80540656 ATA
1 ATA
80540659 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:80542158 original size:42 final size:43
Alignment explanation
Indices: 80542054--80542401 Score: 585
Period size: 43 Copynumber: 8.2 Consensus size: 43
80542044 GCATGAAACT
*
80542054 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
80542097 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTG-
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
80542139 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
80542182 CGATGATGTGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
80542224 C-ATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
80542266 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
80542309 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
80542352 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
80542395 CGGTGAT
1 CGGTGAT
80542402 TCGAGCAAGG
Statistics
Matches: 292, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
41 13 0.04
42 97 0.33
43 182 0.62
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:80542658 original size:29 final size:28
Alignment explanation
Indices: 80542558--80542716 Score: 124
Period size: 29 Copynumber: 5.5 Consensus size: 28
80542548 ATGATTAGAG
* *
80542558 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
80542587 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
80542615 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
80542645 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
80542673 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
80542702 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
80542717 GATCGGTCAG
Statistics
Matches: 99, Mismatches: 24, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
28 27 0.27
29 64 0.65
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:80542733 original size:28 final size:28
Alignment explanation
Indices: 80542587--80542741 Score: 89
Period size: 29 Copynumber: 5.4 Consensus size: 28
80542577 CTTTAACCGA
* * *
80542587 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* ** * * *
80542616 GCACTGTGTGTGCGA-ATTCCTTTAACCGA
1 GCACTATGTGTGCGAGA-T-CGGTCACTGG
* *
80542645 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
80542674 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
80542702 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
80542730 GCACTAAGTGTG
1 GCACTATGTGTG
80542742 TGAAATGAGA
Statistics
Matches: 94, Mismatches: 26, Indels: 13
0.71 0.20 0.10
Matches are distributed among these distances:
28 37 0.39
29 51 0.54
30 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:80542743 original size:58 final size:58
Alignment explanation
Indices: 80542555--80542723 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
80542545 CGAATGATTA
* *
80542555 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
80542613 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
80542671 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
80542724 CAGTGGGCAC
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 31 0.29
58 76 0.71
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:80546715 original size:35 final size:35
Alignment explanation
Indices: 80546676--80546748 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
80546666 GGTATGTGAT
80546676 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80546711 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80546746 ATA
1 ATA
80546749 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:80548973 original size:27 final size:28
Alignment explanation
Indices: 80548917--80548985 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
80548907 AAATTTGTAC
80548917 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80548945 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80548972 AGC-CTGAGTGTGCG
1 AGCACTAAGTGTGCG
80548986 GACTCACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 10 0.26
27 12 0.31
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80552915 original size:29 final size:29
Alignment explanation
Indices: 80552824--80552955 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
80552814 TACTCGATTT
** * *
80552824 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
80552853 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
80552882 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
80552911 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80552940 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80552956 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80560648 original size:29 final size:29
Alignment explanation
Indices: 80560557--80560688 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
80560547 TACTCGATTT
** * *
80560557 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
80560586 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
80560615 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
80560644 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80560673 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80560689 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80562809 original size:49 final size:49
Alignment explanation
Indices: 80562742--80563034 Score: 474
Period size: 49 Copynumber: 6.1 Consensus size: 49
80562732 TTTACCACAT
* * *
80562742 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
80562791 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
80562840 ATATGTATACATTTTCACATTCATCACATCGG-C------CCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
80562882 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
80562931 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
80562980 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
80563029 ATATAT
1 ATATAT
80563035 TATTATGTAC
Statistics
Matches: 229, Mismatches: 8, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
42 41 0.18
43 1 0.00
48 1 0.00
49 186 0.81
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:80562965 original size:140 final size:140
Alignment explanation
Indices: 80562742--80563013 Score: 508
Period size: 140 Copynumber: 1.9 Consensus size: 140
80562732 TTTACCACAT
* *
80562742 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
80562807 ACATTCATCACATCGGCCATTAGGCCTCATCACATATGTATACATTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTCATCACATATGTATACATTTTCACATTCATCACATCGG
80562872 CCCTCATCAC
131 CCCTCATCAC
* *
80562882 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
80562947 ACATTCATCACATCGGCCATTAGGCCTCATCACATATGTATACATTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTCATCACATATGTATACATTTTCACATTCATCACATCGG
80563012 CC
131 CC
80563014 ATTAGGCCTT
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (140 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACATTTTC
ACATTCATCACATCGGCCATTAGGCCTCATCACATATGTATACATTTTCACATTCATCACATCGG
CCCTCATCAC
Found at i:80567138 original size:40 final size:40
Alignment explanation
Indices: 80567094--80567845 Score: 1288
Period size: 40 Copynumber: 18.8 Consensus size: 40
80567084 CCAGCATGAT
* * *
80567094 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567134 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
80567174 TGCTCTTCGAAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
80567214 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567254 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
80567294 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567334 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567374 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567414 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567454 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567494 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567534 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567574 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567614 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
80567654 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
80567694 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
80567734 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567774 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
80567814 TGCTCTTTGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
80567846 CTCAATTCTC
Statistics
Matches: 675, Mismatches: 37, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 675 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:80568619 original size:35 final size:35
Alignment explanation
Indices: 80568573--80568645 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
80568563 GGTATGTGAT
80568573 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80568608 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
80568643 ATA
1 ATA
80568646 AAGAGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:80571159 original size:21 final size:20
Alignment explanation
Indices: 80571131--80571169 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
80571121 CAAAACTTGT
80571131 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
80571151 ATAATCTATCGTCAAACAT
1 ATAA-CTATCATCAAACAT
80571170 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:80585726 original size:25 final size:26
Alignment explanation
Indices: 80585679--80585727 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
80585669 AAATTTTTGG
* *
80585679 GTTTCTGTTTTTAAATTTCTTAGGGA
1 GTTTCTATTTTTAAACTTCTTAGGGA
80585705 GTTTCTATTTTTAAACTT-TTAGG
1 GTTTCTATTTTTAAACTTCTTAGG
80585728 TTTTTAGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.55
Consensus pattern (26 bp):
GTTTCTATTTTTAAACTTCTTAGGGA
Found at i:80586486 original size:16 final size:17
Alignment explanation
Indices: 80586451--80586493 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
80586441 GAGGTTTTCA
*
80586451 AAGAAACAATGGGGAAG
1 AAGAAACAATGGGAAAG
*
80586468 AAGAAACTAT-GGAAAG
1 AAGAAACAATGGGAAAG
*
80586484 AAGAAGCAAT
1 AAGAAACAAT
80586494 ATAGAAGAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.56, C:0.07, G:0.28, T:0.09
Consensus pattern (17 bp):
AAGAAACAATGGGAAAG
Found at i:80595853 original size:19 final size:19
Alignment explanation
Indices: 80595829--80595865 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80595819 AGGTAGTTTT
80595829 TCAATGGTTTCAATTTTAC
1 TCAATGGTTTCAATTTTAC
80595848 TCAATGGTTTCAATTTTA
1 TCAATGGTTTCAATTTTA
80595866 GATTTATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.49
Consensus pattern (19 bp):
TCAATGGTTTCAATTTTAC
Found at i:80599076 original size:40 final size:40
Alignment explanation
Indices: 80598973--80599181 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
80598963 AACATTGGAA
80598973 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80599013 ATATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80599052 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80599092 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80599131 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80599172 CTATATCCGG
1 ATATATCCGG
80599182 TTAAATCCCG
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 41 0.28
40 108 0.72
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80604809 original size:40 final size:40
Alignment explanation
Indices: 80604765--80604944 Score: 190
Period size: 39 Copynumber: 4.6 Consensus size: 40
80604755 GTTCAAAACA
* * ***
80604765 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
80604805 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * *
80604845 CCTTCGGG-CTTAGCCCGGATATCA-TA-GCTCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
80604882 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
80604921 CCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGGATATCA
80604945 ATTCGCACAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
37 33 0.27
38 2 0.02
39 48 0.39
40 40 0.33
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:80604914 original size:76 final size:77
Alignment explanation
Indices: 80604797--80604944 Score: 262
Period size: 76 Copynumber: 1.9 Consensus size: 77
80604787 TGGTAACCCG
80604797 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCG
80604862 GATATCATAGCT
66 GATATCATAGCT
* * *
80604874 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCCG
1 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCG
80604938 GATATCA
66 GATATCA
80604945 ATTCGCACAT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
76 53 0.78
77 15 0.22
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (77 bp):
CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCG
GATATCATAGCT
Found at i:80604928 original size:39 final size:39
Alignment explanation
Indices: 80604795--80604953 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
80604785 TATGGTAACC
* * *
80604795 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
80604835 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TA-G
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
80604872 CTCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
80604911 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT--CAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
80604948 CGCACA
1 CGCACA
80604954 TTCATCACAT
Statistics
Matches: 109, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
37 44 0.40
38 2 0.02
39 46 0.42
40 17 0.16
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:80612885 original size:40 final size:40
Alignment explanation
Indices: 80612841--80613025 Score: 160
Period size: 39 Copynumber: 4.7 Consensus size: 40
80612831 GTTCAAAACA
* ***
80612841 CCTTCGGGACATAACCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * *
80612881 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * * * * * *
80612921 CCTTCGGG-CTTAGCCCGGATATCATAGCTCACACAATTG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* * ** *
80612960 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
* *
80612999 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACATAACCCGGATATCACAA
80613026 TTCACACATT
Statistics
Matches: 130, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 89 0.68
40 41 0.32
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACATAACCCGGATATCACAACCCGCACAAATG
Found at i:80613028 original size:39 final size:39
Alignment explanation
Indices: 80612871--80613025 Score: 247
Period size: 39 Copynumber: 3.9 Consensus size: 39
80612861 TATGGTAACC
* *
80612871 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
80612911 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
80612950 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
80612989 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
80613026 TTCACACATT
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80625400 original size:17 final size:16
Alignment explanation
Indices: 80625341--80625400 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
80625331 GAGACAACCA
* *
80625341 CCATACATGCATTTAAG
1 CCATTCATGCATTT-AT
80625358 CCATTCATGCATTCTAT
1 CCATTCATGCATT-TAT
*
80625375 -CATCCCATGCATTTGAT
1 CCAT-TCATGCATTT-AT
80625392 CCATTCATG
1 CCATTCATG
80625401 GACTAGCCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 4 0.11
17 27 0.77
18 4 0.11
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (16 bp):
CCATTCATGCATTTAT
Found at i:80628121 original size:40 final size:40
Alignment explanation
Indices: 80627983--80628165 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
80627973 TCGAATGATG
* *
80627983 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
80628023 TCC-GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
*
80628062 TCC-GGCGAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
80628100 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
80628141 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80628166 AGCGAGTCGT
Statistics
Matches: 114, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
38 26 0.23
39 32 0.28
40 54 0.47
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:80631369 original size:21 final size:21
Alignment explanation
Indices: 80631345--80631387 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
80631335 GCCAGCTGTA
80631345 ATATCATCAATGTTGGCCCAG
1 ATATCATCAATGTTGGCCCAG
80631366 ATATCATCAATGTTGGCCCAG
1 ATATCATCAATGTTGGCCCAG
80631387 A
1 A
80631388 ATATGTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (21 bp):
ATATCATCAATGTTGGCCCAG
Found at i:80636150 original size:79 final size:82
Alignment explanation
Indices: 80636010--80636194 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80636000 TCGAATGATG
* * *
80636010 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
80636074 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
80636090 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
80636152 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
80636170 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80636195 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:80636202 original size:40 final size:40
Alignment explanation
Indices: 80636011--80636202 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
80636001 CGAATGATGT
* * * * *
80636011 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
80636051 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
80636091 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
80636130 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
80636170 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
80636203 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:80636225 original size:79 final size:79
Alignment explanation
Indices: 80636010--80636227 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
80636000 TCGAATGATG
* * * * ** *
80636010 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
80636073 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
80636090 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
80636155 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
80636170 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
80636228 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:80639281 original size:12 final size:12
Alignment explanation
Indices: 80639264--80639293 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80639254 TTTAATCTCC
*
80639264 TTTTCAATTTCT
1 TTTTCAACTTCT
80639276 TTTTCAACTTCT
1 TTTTCAACTTCT
80639288 TTTTCA
1 TTTTCA
80639294 CTCTCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTCAACTTCT
Found at i:80639337 original size:17 final size:17
Alignment explanation
Indices: 80639317--80639350 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80639307 TTTTGTTCTC
80639317 TTTTTCAATCTCATTTT
1 TTTTTCAATCTCATTTT
* *
80639334 TTTTTCATTTTCATTTT
1 TTTTTCAATCTCATTTT
80639351 GCTTTTCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCAATCTCATTTT
Found at i:80639429 original size:5 final size:5
Alignment explanation
Indices: 80639419--80639475 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
80639409 CTCTTTCCTC
*
80639419 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
80639466 TCTTT TCTTT
1 TCTTT TCTTT
80639476 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:80639459 original size:15 final size:14
Alignment explanation
Indices: 80639419--80639475 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
80639409 CTCTTTCCTC
*
80639419 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
80639434 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
80639449 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
80639466 TCTTTTCTTT
1 TCTTTTCTTT
80639476 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:80639485 original size:21 final size:20
Alignment explanation
Indices: 80639417--80639486 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
80639407 GCCTCTTTCC
80639417 TCTCTTTTCTTTTTATTTCATTT
1 TCTCTTTTC-TTTT-TTT-ATTT
**
80639440 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
80639460 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
80639480 TCTCTTT
1 TCTCTTT
80639487 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 9 0.23
22 7 0.18
23 3 0.08
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:80642837 original size:17 final size:17
Alignment explanation
Indices: 80642792--80642840 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
80642782 TATTGAGTTC
*
80642792 TTTCTTCTTGTTCTCTT
1 TTTCTTTTTGTTCTCTT
80642809 TTTCTGTCTTTGTTCT-TT
1 TTTCT-T-TTTGTTCTCTT
80642827 TCTTCTTTTTGTTC
1 T-TTCTTTTTGTTC
80642841 CATTGCCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 12 0.43
18 5 0.18
19 11 0.39
ACGTcount: A:0.00, C:0.20, G:0.08, T:0.71
Consensus pattern (17 bp):
TTTCTTTTTGTTCTCTT
Found at i:80644080 original size:27 final size:27
Alignment explanation
Indices: 80643926--80644074 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
80643916 CCTTAATTGA
*
80643926 TAAAATGACTGTTTTGCCCTTATAAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
80643953 TAAAATTACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
80643980 TAAAATGATTGTTTTACACTTATG-GAG
1 TAAAATGACTGTTTTGCCCTTATGAG-G
80644007 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
80644034 TAAAATGAGC-GTTTTGCCCTTATGGGG
1 TAAAATGA-CTGTTTTGCCCTTATGAGG
*
80644061 TAAAA-GACTATTTT
1 TAAAATGACTGTTTT
80644075 ACCCCTGTGT
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
25 1 0.01
26 7 0.07
27 97 0.91
28 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:80647883 original size:24 final size:24
Alignment explanation
Indices: 80647851--80647901 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
80647841 AAGGAAGAAT
80647851 TGGTGGCTTTGTCCACAACCTACA
1 TGGTGGCTTTGTCCACAACCTACA
*
80647875 TGGTGGCTTTGTCTACAACCTACA
1 TGGTGGCTTTGTCCACAACCTACA
80647899 TGG
1 TGG
80647902 CAGCTTGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (24 bp):
TGGTGGCTTTGTCCACAACCTACA
Found at i:80647907 original size:24 final size:24
Alignment explanation
Indices: 80647856--80647907 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80647846 AGAATTGGTG
**
80647856 GCTTTGTCCACAACCTACATGGTG
1 GCTTTGTCCACAACCTACATGGCA
*
80647880 GCTTTGTCTACAACCTACATGGCA
1 GCTTTGTCCACAACCTACATGGCA
80647904 GCTT
1 GCTT
80647908 GTTTACGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (24 bp):
GCTTTGTCCACAACCTACATGGCA
Found at i:80648158 original size:15 final size:15
Alignment explanation
Indices: 80648138--80648169 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80648128 AAGTATCTGT
80648138 TTATTGTTATATAAC
1 TTATTGTTATATAAC
*
80648153 TTATTGTTATTTAAC
1 TTATTGTTATATAAC
80648168 TT
1 TT
80648170 GTTATAAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (15 bp):
TTATTGTTATATAAC
Found at i:80650742 original size:16 final size:16
Alignment explanation
Indices: 80650721--80650767 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
80650711 ATAGCCCAAC
80650721 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTTGGCA
* *
80650737 TTTCAGCTTTTCGGCT
1 TTTCAGCTTTTTGGCA
*
80650753 TTTCAGCATTTTGGC
1 TTTCAGCTTTTTGGC
80650768 TTTAAACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTTGGCA
Found at i:80654961 original size:29 final size:28
Alignment explanation
Indices: 80654875--80654981 Score: 99
Period size: 29 Copynumber: 3.8 Consensus size: 28
80654865 TACATCCATG
* *
80654875 CATATGGCCCGCTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCCAATTTTATT
* * * *
80654903 CAAATGACCCATCT-GGCCCAGTTCGTATT
1 CATATGGCCCA-CTAGGCCCAATT-TTATT
*
80654932 CTTATGGCCCACTAGGCCCAATTTTCATT
1 CATATGGCCCACTAGGCCCAATTTT-ATT
* *
80654961 CATATGGCCAATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
80654982 ATCATATTAT
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 18 0.30
29 43 0.70
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTTTATT
Found at i:80655240 original size:16 final size:16
Alignment explanation
Indices: 80655204--80655255 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
80655194 CGTAGCCCAA
*
80655204 CTTTT-AGCTTTTTGG
1 CTTTTCAGCATTTTGG
* *
80655219 CATTTCAG-GTTTTCGG
1 CTTTTCAGCATTTT-GG
80655235 CTTTTCAGCATTTTGG
1 CTTTTCAGCATTTTGG
80655251 CTTTT
1 CTTTT
80655256 TGACTTTTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 8 0.27
16 18 0.60
17 4 0.13
ACGTcount: A:0.10, C:0.17, G:0.19, T:0.54
Consensus pattern (16 bp):
CTTTTCAGCATTTTGG
Found at i:80691922 original size:28 final size:28
Alignment explanation
Indices: 80691860--80691961 Score: 132
Period size: 28 Copynumber: 3.6 Consensus size: 28
80691850 ATACAAAAAA
* * *
80691860 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCAGA-ACAGATAATT
*
80691889 TGTGGCAGCGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGATAATT
* *
80691917 TATGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGATAATT
*
80691945 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
80691962 GACACTTCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 49 0.77
29 15 0.23
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
TGTGGCAGAGCCACCAGAACAGATAATT
Found at i:80692114 original size:28 final size:28
Alignment explanation
Indices: 80692067--80692131 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
80692057 AAATTAACCC
*
80692067 TAGGGGTATAGAGGTTATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
80692095 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
80692123 TAGGGGTAT
1 TAGGGGTAT
80692132 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:80699777 original size:28 final size:28
Alignment explanation
Indices: 80699708--80699809 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
80699698 ATACAGAAAA
* * * * *
80699708 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCAGA-AAAAATAATT
*
80699737 TGTGGCAGCGCCACCAGAAAAAATAATT
1 TGTGGCAGAGCCACCAGAAAAAATAATT
* * *
80699765 TGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAAAAAATAATT
*
80699793 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
80699810 GACGCTTCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 47 0.76
29 15 0.24
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.21
Consensus pattern (28 bp):
TGTGGCAGAGCCACCAGAAAAAATAATT
Found at i:80703383 original size:49 final size:49
Alignment explanation
Indices: 80703327--80703492 Score: 208
Period size: 49 Copynumber: 3.4 Consensus size: 49
80703317 TACGCATAGG
*
80703327 AGCCTGCACTTAATACTACACATGCGATCAATTATTCAGTACACGTAGT
1 AGCCTGCACTTAATACTACACATGCGACCAATTATTCAGTACACGTAGT
* * * ** *
80703376 AGCCTGCACTTAGTACTACACACGTGACCTAACCA-TCTGATACACGTAGT
1 AGCCTGCACTTAATACTACACATGCGACC-AATTATTCAG-TACACGTAGT
* * *
80703426 AGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGT
1 AGCCTGCACTTAATACTACACATGCGACCAATTATTCAGTACACGTAGT
*
80703475 AGCCTACACTTAATACTA
1 AGCCTGCACTTAATACTA
80703493 GACACGTGAC
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
49 56 0.58
50 41 0.42
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (49 bp):
AGCCTGCACTTAATACTACACATGCGACCAATTATTCAGTACACGTAGT
Found at i:80706337 original size:27 final size:27
Alignment explanation
Indices: 80706307--80706462 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
80706297 ATTACCAAAG
*
80706307 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
80706334 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
80706361 TA-CCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
80706387 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
80706414 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
80706441 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
80706463 TAAAATACCC
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
26 24 0.20
27 95 0.80
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:80706354 original size:54 final size:54
Alignment explanation
Indices: 80706296--80706491 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
80706286 CAATTTGTAA
* *
80706296 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAG
*** * * *
80706350 AATTACCGTTTTA-CCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
1 AATTACCAAATTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAG
*** * * *
80706403 AATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAG
* * * *
80706457 AATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 AATTACCAAATTACCCTCGATTTACAAAATTACCA
80706492 AAATACCCCT
Statistics
Matches: 120, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
53 49 0.41
54 71 0.59
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.35
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAG
Found at i:80706380 original size:53 final size:54
Alignment explanation
Indices: 80706307--80706462 Score: 251
Period size: 53 Copynumber: 2.9 Consensus size: 54
80706297 ATTACCAAAG
* *
80706307 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
80706361 TA-CCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* *
80706414 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC
80706463 TAAAATACCC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 49 0.53
54 44 0.47
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:80706399 original size:80 final size:81
Alignment explanation
Indices: 80706307--80706462 Score: 251
Period size: 80 Copynumber: 1.9 Consensus size: 81
80706297 ATTACCAAAG
* * *
80706307 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTA-CCTCGATT
1 TACCCTCAATTTACAAAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATT
* *
80706371 TATAGAATTACCATTT
66 TACAAAATTACCATTT
*
80706387 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCAATTTACAAAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATT
80706452 TACAAAATTAC
66 TACAAAATTAC
80706463 TAAAATACCC
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 52 0.75
81 17 0.25
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (81 bp):
TACCCTCAATTTACAAAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:80706471 original size:27 final size:27
Alignment explanation
Indices: 80706262--80706608 Score: 191
Period size: 27 Copynumber: 12.9 Consensus size: 27
80706252 AATACTTTAG
* * ** *
80706262 TTTACCAAATTACTAAAATGTCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
80706289 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
****
80706316 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
80706343 TTTACAGAATTACCGTTTTA-CCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *** *
80706369 TTTATAGAATTACCATTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* **** *
80706396 TTTACAGAATTACCGTTTTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
80706423 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
80706450 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
80706477 TTTACAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
80706503 GTTTGTAAAATTACCAAAATACCACT-GG
1 -TTTACAAAATTACCAAAATACC-CTCGA
*** * *
80706531 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
***
80706558 TTCGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
80706585 TTTACAAAATTA-CAGAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
80706609 TAACTTTTTA
Statistics
Matches: 264, Mismatches: 48, Indels: 15
0.81 0.15 0.05
Matches are distributed among these distances:
26 29 0.11
27 234 0.89
28 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:80706499 original size:54 final size:54
Alignment explanation
Indices: 80706423--80706664 Score: 195
Period size: 54 Copynumber: 4.4 Consensus size: 54
80706413 TTACCCTCAA
* *** * * *
80706423 TTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCTATTTATAAAATTACCAAAATACCCTTGG
*
80706477 TTTACAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACCAAAATACCCTCTA-TTTATAAAATTACCAAAATACC-CTTGG
*** * * ** * *
80706531 TTTGTGAAATTACCGAAATACCCTCAATTCGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACCAAAATACCCTCTATTTATAAAATTACCAAAATACCCTTGG
* **
80706585 TTTACAAAATTA-CAGAAATACCCT-TAACTTTTTAAAAATTATAAAAATACCCTTGG
1 TTTACAAAATTACCA-AAATACCCTCT-A-TTTAT-AAAATTACCAAAATACCCTTGG
** *
80706641 TTTGTAAATTTACCAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
80706665 TGTAGGATGA
Statistics
Matches: 150, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
53 4 0.03
54 102 0.68
55 6 0.04
56 36 0.24
57 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCTATTTATAAAATTACCAAAATACCCTTGG
Found at i:80706664 original size:27 final size:27
Alignment explanation
Indices: 80706455--80706666 Score: 185
Period size: 27 Copynumber: 7.8 Consensus size: 27
80706445 CTCGATTTAC
* **
80706455 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
80706482 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
80706509 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* * *** *
80706536 GAAATTACCGAAATACCCTCAATTCGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
80706563 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
** *
80706590 AAAATTA-CAGAAATACCCTTAACTTTTT
1 AAAATTACCA-AAATACCCTT-GGTTTGT
**
80706618 AAAAATTATAAAAATACCCTTGGTTTGT
1 -AAAATTACCAAAATACCCTTGGTTTGT
*
80706646 AAATTTACCAAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
80706667 TAGGATGAAA
Statistics
Matches: 147, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 3 0.02
27 118 0.80
28 8 0.05
29 17 0.12
30 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:80706702 original size:137 final size:136
Alignment explanation
Indices: 80706443--80706703 Score: 298
Period size: 137 Copynumber: 1.9 Consensus size: 136
80706433 TACCATTTTA
*
80706443 CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTG
1 CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACAAAAATACCCCTAGTTTG
** * * *
80706508 TAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTCGTAAAATTACCA
66 TAAAATTACCAAAATACCACTGGTAGGTGAAATGACCAAAATACCCTCAATACGTAAAATTACCA
80706573 AAATAC
131 AAATAC
** * * *
80706579 CCCT-GATTTACAAAATTAC-AGAAATACCCTTAACTTTTTA-AAAATTATAAAAATACCCTTGG
1 CCCTCGATTTACAAAATTACTA-AAATACCCTT---GGTTTACAAAATTACAAAAATACCCCTAG
* * * *
80706641 TTTGTAAATTTACCAAAATACC-CTTGTAGGATGAAATGACTAAAATACCC-CTAATAGGTAAAA
62 TTTGTAAAATTACCAAAATACCACTGGTAGG-TGAAATGACCAAAATACCCTC-AATACGTAAAA
80706704 AGACCGTAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
134 1 0.01
135 25 0.24
136 10 0.10
137 64 0.62
138 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (136 bp):
CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACAAAAATACCCCTAGTTTG
TAAAATTACCAAAATACCACTGGTAGGTGAAATGACCAAAATACCCTCAATACGTAAAATTACCA
AAATAC
Found at i:80706761 original size:27 final size:27
Alignment explanation
Indices: 80706657--80706761 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
80706647 AATTTACCAA
* * **
80706657 AATACCCTTGTA-GGATGAAATGACTAA
1 AATACCCCTGTATGG-TAAAATGACTGT
* * *
80706684 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACTGT
* *
80706711 AA-AGCCCCTGTAAGGTAAAGTGACTGT
1 AATA-CCCCTGTATGGTAAAATGACTGT
80706738 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
80706762 GAATATGCCC
Statistics
Matches: 59, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
26 2 0.03
27 53 0.90
28 4 0.07
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACTGT
Found at i:80707646 original size:24 final size:25
Alignment explanation
Indices: 80707579--80707639 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
80707569 CTAAAAAGAC
* *
80707579 TTGCCCCAGTTTACCGAAAAGGGCT
1 TTGCCCCAGTTTATCAAAAAGGGCT
80707604 TTGCCCCAGTTTATCAAAAAGGGCT
1 TTGCCCCAGTTTATCAAAAAGGGCT
*
80707629 TTGCCTCAGTT
1 TTGCCCCAGTT
80707640 ATTAAAAGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (25 bp):
TTGCCCCAGTTTATCAAAAAGGGCT
Found at i:80707652 original size:24 final size:24
Alignment explanation
Indices: 80707595--80707666 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
80707585 CAGTTTACCG
*
80707595 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCTCAG-TTATC
*
80707619 AAAA-AGGGCTTTGCCTCAGTTATT
1 AAAAGA-GGCTTTGCCTCAGTTATC
**
80707643 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCCT-CAGTTAT
80707667 ATCTAAAGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 20 0.50
25 20 0.50
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCTCAGTTATC
Found at i:80707907 original size:31 final size:31
Alignment explanation
Indices: 80707858--80707933 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
80707848 CGCTTACAGT
80707858 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
80707888 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
80707919 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
80707934 ATATATGTCG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 11 0.24
31 34 0.76
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:80712205 original size:13 final size:13
Alignment explanation
Indices: 80712187--80712220 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
80712177 AATCACACAT
80712187 GGGCGTGTTACAC
1 GGGCGTGTTACAC
80712200 GGGCGTGTTACAC
1 GGGCGTGTTACAC
*
80712213 AGGCGTGT
1 GGGCGTGT
80712221 CCTTACCGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.41, T:0.24
Consensus pattern (13 bp):
GGGCGTGTTACAC
Found at i:80732809 original size:40 final size:40
Alignment explanation
Indices: 80732735--80732912 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
80732725 GAGTCACGTA
** *
80732735 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
80732774 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* * *
80732814 CCTTCGGGTCTTAACCCGGATATAACAACTCGTACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
80732854 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
80732894 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
80732913 GTATCATTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 100 0.85
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:80734814 original size:2 final size:2
Alignment explanation
Indices: 80734807--80734849 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
80734797 ACATCAGCTA
80734807 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80734849 A
1 A
80734850 ATAGGCTGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80737841 original size:179 final size:179
Alignment explanation
Indices: 80737541--80737897 Score: 696
Period size: 179 Copynumber: 2.0 Consensus size: 179
80737531 ACTAGATCAT
*
80737541 AATCCTTTAATAATTCAAGCCATCTCCTCTGTCGCAGATTCAAATCCTTTTGATTCATCAAATAC
1 AATCCTTTAATAATTCAAGCCATCTCCTCTGTCGCAGATTCAAATCCTTTTGATTCACCAAATAC
80737606 TTCAAACTTTTGTGATCAGTAAAAATTTGGCATTTTTCACCATACAAATAATGTCGCCAAATCTT
66 TTCAAACTTTTGTGATCAGTAAAAATTTGGCATTTTTCACCATACAAATAATGTCGCCAAATCTT
80737671 CAAGGCAAGACAATAGCGGCCAATTCCAAATCATGTGTAGGATAGTTCA
131 CAAGGCAAGACAATAGCGGCCAATTCCAAATCATGTGTAGGATAGTTCA
80737720 AATCCTTTAATAATTCAAGCCATCTCCTCTGTCGCAGATTCAAATCCTTTTGATTCACCAAATAC
1 AATCCTTTAATAATTCAAGCCATCTCCTCTGTCGCAGATTCAAATCCTTTTGATTCACCAAATAC
80737785 TTCAAACTTTTGTGATCAGTAAAAATTTGGCATTTTTCACCATACAAATAATGTCGCCAAATCTT
66 TTCAAACTTTTGTGATCAGTAAAAATTTGGCATTTTTCACCATACAAATAATGTCGCCAAATCTT
*
80737850 CAAGGCAAGACAATAGTGGCCAATTCCAAATCATGTGTAGGATAGTTC
131 CAAGGCAAGACAATAGCGGCCAATTCCAAATCATGTGTAGGATAGTTC
80737898 TTCTCATGCG
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
179 176 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (179 bp):
AATCCTTTAATAATTCAAGCCATCTCCTCTGTCGCAGATTCAAATCCTTTTGATTCACCAAATAC
TTCAAACTTTTGTGATCAGTAAAAATTTGGCATTTTTCACCATACAAATAATGTCGCCAAATCTT
CAAGGCAAGACAATAGCGGCCAATTCCAAATCATGTGTAGGATAGTTCA
Found at i:80742369 original size:68 final size:68
Alignment explanation
Indices: 80742222--80742377 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
80742212 AGCCGATTTG
* * * * *
80742222 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
80742287 TATC
65 TATA
* *
80742291 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
80742353 ATATAGTA
62 ATATA-TA
80742361 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
80742378 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:80745396 original size:30 final size:29
Alignment explanation
Indices: 80745302--80745403 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
80745292 TATAGTGAAT
* * *
80745302 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
80745331 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
80745359 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
80745389 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
80745404 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:80756117 original size:39 final size:39
Alignment explanation
Indices: 80756063--80756220 Score: 244
Period size: 39 Copynumber: 4.0 Consensus size: 39
80756053 TGATGAATGT
80756063 GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
1 GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
*
80756102 GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGT
1 GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
** *
80756141 GAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
1 GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
* * *
80756180 GAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 GAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
80756220 G
1 G
80756221 GGTTACCATA
Statistics
Matches: 109, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 92 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
Found at i:80756236 original size:40 final size:40
Alignment explanation
Indices: 80756075--80756250 Score: 169
Period size: 39 Copynumber: 4.5 Consensus size: 40
80756065 ATTGTGATAT
* *** *
80756075 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
80756114 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
80756153 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
80756192 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
80756232 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80756251 TGTTTTGAAC
Statistics
Matches: 120, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 80 0.67
40 40 0.33
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:80764254 original size:38 final size:39
Alignment explanation
Indices: 80764153--80764314 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
80764143 TGTGAATGAA
*
80764153 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
80764192 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
80764230 TGTGTGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
80764269 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
80764309 TGTGCG
1 TGTGCG
80764315 GGTTACCATA
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 34 0.30
39 61 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:80764330 original size:40 final size:40
Alignment explanation
Indices: 80764170--80764344 Score: 160
Period size: 39 Copynumber: 4.5 Consensus size: 40
80764160 ATTGTGATAT
* *** *
80764170 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
80764209 CCGGGCTAAG-CCCGAAGGCAA-TGTGTGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
80764247 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
80764286 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
80764326 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80764345 TGTTTTGAAC
Statistics
Matches: 118, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 34 0.29
39 44 0.37
40 40 0.34
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:80777617 original size:28 final size:29
Alignment explanation
Indices: 80777576--80777631 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
80777566 CTGGGTTTTT
*
80777576 GGACATGGGCGTGT-CTAGACCGTGTGAG
1 GGACACGGGCGTGTGCTAGACCGTGTGAG
* * *
80777604 GGACACGGGTGTGTGCTTGGCCGTGTGA
1 GGACACGGGCGTGTGCTAGACCGTGTGA
80777632 AAACCTCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.14, C:0.18, G:0.45, T:0.23
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGACCGTGTGAG
Found at i:80784272 original size:23 final size:25
Alignment explanation
Indices: 80784245--80784300 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
80784235 ATCAAGATTT
* *
80784245 TATAAAATAT-ATTTGT-CCAAATA
1 TATAAAATATAATTTATACAAAATA
80784268 TATAAAATATAATTTATACAAAATA
1 TATAAAATATAATTTATACAAAATA
80784293 TATAAAAT
1 TATAAAAT
80784301 CTAAAATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 10 0.34
24 5 0.17
25 14 0.48
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (25 bp):
TATAAAATATAATTTATACAAAATA
Found at i:80784312 original size:18 final size:19
Alignment explanation
Indices: 80784291--80784331 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
80784281 TTATACAAAA
80784291 TATATAAAATCTA-AAATG
1 TATATAAAATCTATAAATG
* *
80784309 TATA-AAAATGTATAAATT
1 TATATAAAATCTATAAATG
80784327 TATAT
1 TATAT
80784332 TTTTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (19 bp):
TATATAAAATCTATAAATG
Found at i:80784315 original size:25 final size:26
Alignment explanation
Indices: 80784263--80784324 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
80784253 ATATTTGTCC
**
80784263 AAATATATAAAATATAATTTATAC-A
1 AAATATATAAAATATAAAATATACAA
* * *
80784288 AAATATATAAAATCTAAAATGTATAA
1 AAATATATAAAATATAAAATATACAA
*
80784314 AAATGTATAAA
1 AAATATATAAA
80784325 TTTATATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 19 0.63
26 11 0.37
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (26 bp):
AAATATATAAAATATAAAATATACAA
Found at i:80784541 original size:18 final size:20
Alignment explanation
Indices: 80784510--80784546 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
80784500 TTAGTTTCAA
80784510 ATAATATTTCTAATATTTTC
1 ATAATATTTCTAATATTTTC
80784530 ATAAT-TTT-TAATATTTT
1 ATAATATTTCTAATATTTT
80784547 TAGTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 3 0.18
20 5 0.29
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
ATAATATTTCTAATATTTTC
Found at i:80785504 original size:30 final size:29
Alignment explanation
Indices: 80785462--80785518 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
80785452 TTTATTATTA
80785462 AATTTTTTATTATTTTA-AAGACATTTGTT
1 AATTTTTTATTATTTTAGAA-ACATTTGTT
80785491 AATTTTGTTATTATTTTAGAAACATTTG
1 AATTTT-TTATTATTTTAGAAACATTTG
80785519 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 6 0.23
30 18 0.69
31 2 0.08
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.56
Consensus pattern (29 bp):
AATTTTTTATTATTTTAGAAACATTTGTT
Found at i:80785671 original size:12 final size:12
Alignment explanation
Indices: 80785641--80785673 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
80785631 TATATATTTT
80785641 AAAATT-ATATA
1 AAAATTAATATA
80785652 AAAA-TAATATA
1 AAAATTAATATA
80785663 AAAATTAATAT
1 AAAATTAATAT
80785674 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:80791959 original size:9 final size:9
Alignment explanation
Indices: 80791945--80791975 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
80791935 AATTTGTGAA
80791945 AAATAAAAT
1 AAATAAAAT
80791954 AAATAAAAT
1 AAATAAAAT
80791963 AAATAAAAAT
1 AAAT-AAAAT
80791973 AAA
1 AAA
80791976 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:80804536 original size:13 final size:13
Alignment explanation
Indices: 80804515--80804581 Score: 73
Period size: 13 Copynumber: 5.1 Consensus size: 13
80804505 AGTTTGGCAA
80804515 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
80804528 TGCTCTTGAAAAG
1 TGCTTTTGAAAAG
* *
80804541 TG-TTGTGAAAAAAA
1 TGCTTTTG--AAAAG
*
80804555 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
80804568 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
80804581 T
1 T
80804582 TTGGTTTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
12 3 0.07
13 30 0.70
14 6 0.14
15 4 0.09
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:80804558 original size:27 final size:28
Alignment explanation
Indices: 80804523--80804579 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
80804513 AATGCTTTTG
*
80804523 AAAAGTGCTCTTGAAAAGTG-TTGTGAA
1 AAAAATGCTCTTGAAAAGTGCTTGTGAA
* * *
80804550 AAAAATGCTTTTGAGAAGTGCTTTTGAA
1 AAAAATGCTCTTGAAAAGTGCTTGTGAA
80804578 AA
1 AA
80804580 GTTTGGTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (28 bp):
AAAAATGCTCTTGAAAAGTGCTTGTGAA
Found at i:80808093 original size:8 final size:8
Alignment explanation
Indices: 80808072--80808174 Score: 84
Period size: 8 Copynumber: 11.9 Consensus size: 8
80808062 TACTCTTATT
80808072 AAAAATTAA
1 AAAAATT-A
80808081 AAAAATTATAA
1 AAAAA-T-T-A
80808092 AAAAATTA
1 AAAAATTA
80808100 AAAAATTA
1 AAAAATTA
80808108 AAAAATTA
1 AAAAATTA
80808116 AAAAATT-
1 AAAAATTA
80808123 AAAAATTAGAA
1 AAAAATT---A
80808134 AAAAATTA
1 AAAAATTA
80808142 TAAAAATCGTA
1 -AAAAAT--TA
*
80808153 AAAAAAT-
1 AAAAATTA
80808160 AAAAATTA
1 AAAAATTA
*
80808168 TAAAATT
1 AAAAATT
80808175 TTTATAAAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 21
0.77 0.03 0.20
Matches are distributed among these distances:
7 13 0.16
8 32 0.40
9 12 0.15
10 7 0.09
11 17 0.21
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAAATTA
Found at i:80808155 original size:37 final size:36
Alignment explanation
Indices: 80808099--80808199 Score: 116
Period size: 37 Copynumber: 2.8 Consensus size: 36
80808089 TAAAAAAATT
80808099 AAAAAATTA-AAAAAT-TAAAAAATTAAAAATTAGA
1 AAAAAATTATAAAAATCTAAAAAATTAAAAATTAGA
* *
80808133 AAAAAATTATAAAAATCGTAAAAAAATAAAAATTATA
1 AAAAAATTATAAAAATC-TAAAAAATTAAAAATTAGA
***
80808170 AAATTTTTATAAAAATCATAAAAAAATTAA
1 AAAAAATTATAAAAATC-T-AAAAAATTAA
80808200 CGCCCATAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
34 9 0.16
35 6 0.11
37 32 0.57
38 9 0.16
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (36 bp):
AAAAAATTATAAAAATCTAAAAAATTAAAAATTAGA
Found at i:80808156 original size:53 final size:50
Alignment explanation
Indices: 80808069--80808174 Score: 140
Period size: 53 Copynumber: 2.1 Consensus size: 50
80808059 CCCTACTCTT
* *
80808069 ATTAAAAATTAAAAAAATTATAAAAAAATTAAAAAATTAAAAAATTAAAAA
1 ATTAAAAATTAAAAAAATTATAAAAAAAGTAAAAAAAT-AAAAATTAAAAA
** *
80808120 ATTAAAAATTAGAAAAAAATTATAAAAATCGTAAAAAAATAAAAATTATAAA
1 ATTAAAAATT--AAAAAAATTATAAAAAAAGTAAAAAAATAAAAATTAAAAA
80808172 ATT
1 ATT
80808175 TTTATAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
51 10 0.21
52 14 0.29
53 24 0.50
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.26
Consensus pattern (50 bp):
ATTAAAAATTAAAAAAATTATAAAAAAAGTAAAAAAATAAAAATTAAAAA
Found at i:80808170 original size:9 final size:9
Alignment explanation
Indices: 80808071--80808193 Score: 87
Period size: 9 Copynumber: 13.7 Consensus size: 9
80808061 CTACTCTTAT
80808071 TAAAAATTA
1 TAAAAATTA
*
80808080 AAAAAATTA
1 TAAAAATTA
80808089 TAAAAAAATTA
1 T--AAAAATTA
80808100 -AAAAATTA
1 TAAAAATTA
80808108 -AAAAATTA
1 TAAAAATTA
80808116 -AAAAA-T-
1 TAAAAATTA
80808122 TAAAAATTAGA
1 TAAAAATT--A
*
80808133 AAAAAATTA
1 TAAAAATTA
**
80808142 TAAAAATCG
1 TAAAAATTA
*
80808151 TAAAAA-AA
1 TAAAAATTA
80808159 TAAAAATTA
1 TAAAAATTA
*
80808168 TAAAATTTTTA
1 TAAAA--ATTA
*
80808179 TAAAAATCA
1 TAAAAATTA
80808188 TAAAAA
1 TAAAAA
80808194 AATTAACGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
7 6 0.07
8 28 0.30
9 35 0.38
11 23 0.25
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
TAAAAATTA
Found at i:80808185 original size:26 final size:26
Alignment explanation
Indices: 80808081--80808172 Score: 82
Period size: 26 Copynumber: 3.5 Consensus size: 26
80808071 TAAAAATTAA
*** *
80808081 AAAAATTATAAAAAAATTAAAAAATT
1 AAAAATTATAAAAATCGTAAAAAAAT
*
80808107 AAAAAATTA-AAAAAT--TAAAAATTAGAA
1 -AAAAATTATAAAAATCGTAAAAA--A-AT
80808134 AAAAATTATAAAAATCGTAAAAAAAT
1 AAAAATTATAAAAATCGTAAAAAAAT
80808160 AAAAATTATAAAA
1 AAAAATTATAAAA
80808173 TTTTTATAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
24 6 0.11
26 28 0.51
27 15 0.27
29 6 0.11
ACGTcount: A:0.73, C:0.01, G:0.02, T:0.24
Consensus pattern (26 bp):
AAAAATTATAAAAATCGTAAAAAAAT
Found at i:80810008 original size:51 final size:51
Alignment explanation
Indices: 80809944--80810059 Score: 133
Period size: 51 Copynumber: 2.3 Consensus size: 51
80809934 ATGGAAACAT
** * * *
80809944 GATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTATAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
* * * ** *
80809995 GATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAGAA
1 GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
80810046 GATATGATATTATA
1 GATATGATATTATA
80810060 TTTGGTGGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (51 bp):
GATATGATATTATAAGATTACAGATCTTAGATAAGATATGGAATCTTAGAA
Found at i:80814091 original size:26 final size:25
Alignment explanation
Indices: 80814055--80814105 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
80814045 AATATTTTTT
*
80814055 TTATGTTTTTAAATATATTTGATTTA
1 TTATATTTTTAAATAT-TTTGATTTA
*
80814081 TTATATTTTTAAATATTTTTATTTA
1 TTATATTTTTAAATATTTTGATTTA
80814106 ATGAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (25 bp):
TTATATTTTTAAATATTTTGATTTA
Found at i:80816872 original size:93 final size:93
Alignment explanation
Indices: 80816760--80816931 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80816750 CGCCCATAAG
* *
80816760 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80816825 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
80816853 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80816918 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
80816932 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80816928 original size:46 final size:46
Alignment explanation
Indices: 80816753--80816928 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80816743 TGTAACCCGC
* * *
80816753 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
80816799 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
80816849 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80816892 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80816929 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80823761 original size:29 final size:29
Alignment explanation
Indices: 80823728--80823830 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
80823718 CCTCCGAACT
** * * *
80823728 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
80823757 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80823786 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80823815 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80823831 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80831716 original size:29 final size:29
Alignment explanation
Indices: 80831683--80831785 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
80831673 CCTCCGAACT
** * * *
80831683 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
80831712 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80831741 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80831770 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80831786 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Done.