Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 271 of 345
Found at i:80835559 original size:93 final size:93
Alignment explanation
Indices: 80835447--80835618 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
80835437 CGCCCATAGG
*
80835447 CGAACTCGGACTCAACTCAACGAGCTAAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TAAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
80835511 AACAAGTTCGGATGCCTAGTTACATCTCA
65 AACAAGCTCGGATGCCTAGTTACATCTCA
** *
80835540 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTAAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
80835605 ACGAGCTCGGATGC
66 ACAAGCTCGGATGC
80835619 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTAAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:80835615 original size:46 final size:46
Alignment explanation
Indices: 80835448--80835615 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 46
80835438 GCCCATAGGC
* *
80835448 GAACTCGGACTCAACTCAACGAGCTAAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCT-CGGACATTCGCATCCATAAGT
* * * * *
80835494 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCATAAGT
*
80835541 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
*
80835587 GAACTTGGACTCAACTCAACGAGCTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
80835616 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 50 0.51
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:80837933 original size:40 final size:40
Alignment explanation
Indices: 80837732--80837919 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
80837722 ATTCGGATTG
* **
80837732 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80837772 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
80837811 ATATCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80837851 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80837891 ATAACCGGGTTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
80837920 AGCTAGTAGC
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.26
40 99 0.74
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:80837933 original size:80 final size:80
Alignment explanation
Indices: 80837732--80837952 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 80
80837722 ATTCGGATTG
* * *
80837732 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATTCCGGGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATACCGGGCTAAGCCCGAAGGCA
80837796 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * * *
80837811 ATATCCAGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATA-ACTGGGCTAAGTCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG-AGCTAG-TAGCTATATACCGGGCTAAG-CCCGAAG
80837873 GCATTTGTGCGAGTTACT
63 GCATTTGTGCGAGTTACT
* *
80837891 ATAACCGGGTTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATAT-CC-GGCTAAACTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATACCGGGCTAAGC-CCGAAGG
80837953 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
78 1 0.01
79 58 0.48
80 62 0.51
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTAGCTATATACCGGGCTAAGCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:80837950 original size:119 final size:119
Alignment explanation
Indices: 80837732--80837952 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 119
80837722 ATTCGGATTG
* * *
80837732 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
80837797 TTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
66 TTGAGCGAGTTACTATATCCAGGCTAACTCCCGAAGGCATTTGTACGAGTTACT
* * *
80837851 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGTTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
80837915 ATTTGAGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGG
64 ATTTGAGCGAGTTA-CTATATCCAGGCT-AACTCCCGAAGG
80837953 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 58 0.65
120 29 0.33
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCGAGTTACTATATCCAGGCTAACTCCCGAAGGCATTTGTACGAGTTACT
Found at i:80838218 original size:22 final size:21
Alignment explanation
Indices: 80838177--80838220 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
80838167 GAATGTGCAT
80838177 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
80838199 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
80838221 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:80844593 original size:54 final size:53
Alignment explanation
Indices: 80844505--80844630 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 53
80844495 AAATGATGAT
*
80844505 GAAAAAAGAAA-AAA-AAAAAAAAAGAGCTCTCATGTTGTCCTTGGCCGAATA
1 GAAAAAAAAAAGAAAGAAAAAAAAAGAGCTCTCATGTTGTCCTTGGCCGAATA
*
80844556 GAAGAAAGAAAAAGAAAGAAAAAAAAA-AGCTCTCATGTTGTTCTTGGCCGAATA
1 GAA-AAA-AAAAAGAAAGAAAAAAAAAGAGCTCTCATGTTGTCCTTGGCCGAATA
*
80844610 GAAAAAAAAAAGAAGGAAAAA
1 GAAAAAAAAAAGAAAGAAAAA
80844631 GAGCTTTGAG
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
51 3 0.04
52 17 0.25
53 7 0.10
54 32 0.47
55 9 0.13
ACGTcount: A:0.56, C:0.10, G:0.19, T:0.15
Consensus pattern (53 bp):
GAAAAAAAAAAGAAAGAAAAAAAAAGAGCTCTCATGTTGTCCTTGGCCGAATA
Found at i:80845870 original size:40 final size:40
Alignment explanation
Indices: 80845765--80845971 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
80845755 GGATTGATAA
* **
80845765 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
80845805 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80845844 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80845884 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80845924 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
80845964 CC-GGCTAA
1 CCGGGCTAA
80845972 ACTCCAAAGG
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 42 0.27
40 113 0.73
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80846247 original size:22 final size:21
Alignment explanation
Indices: 80846206--80846249 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
80846196 GAATGTGCAT
80846206 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
80846228 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
80846250 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:80848842 original size:29 final size:29
Alignment explanation
Indices: 80848810--80848882 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
80848800 CTTCGAGCTC
*
80848810 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
80848839 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
80848868 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
80848883 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:80851533 original size:40 final size:40
Alignment explanation
Indices: 80851431--80851598 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80851421 AAATTGAATA
* * * * *
80851431 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
80851471 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
80851511 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
80851551 CTATCCGGGCTAAGACTCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
80851591 ATATCCGG
1 ATATCCGG
80851599 TTATATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 100 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:80854088 original size:69 final size:69
Alignment explanation
Indices: 80853977--80854119 Score: 241
Period size: 69 Copynumber: 2.1 Consensus size: 69
80853967 TCATTTACGA
* * *
80853977 AGACTCCCATATATGTACTATGGGCTTAATGAGGGCAATTGCAATGGTTATTAGTAAGCTGGTTA
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
80854042 AAAT
66 AAAT
* *
80854046 AGACTCCTATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGGTGGTTA
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
80854111 AAAT
66 AAAT
80854115 AGACT
1 AGACT
80854120 ACAACATACA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (69 bp):
AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
AAAT
Found at i:80855757 original size:27 final size:27
Alignment explanation
Indices: 80855717--80855820 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
80855707 AATTCCTTCA
* *
80855717 ATATTACACTACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* *
80855744 ATTTTGCGCCACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
80855771 ATATTATGCCAC--ATGTTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
*
80855796 ATATTACACCACAAAGGCTTTTCTT
1 ATATTACGCCACAAAGGCTTTTCTT
80855821 ACCTAACGTG
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
25 21 0.34
27 41 0.66
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (27 bp):
ATATTACGCCACAAAGGCTTTTCTTTC
Found at i:80856572 original size:2 final size:2
Alignment explanation
Indices: 80856565--80856599 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80856555 TTTAACTTGG
80856565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80856600 AAATCTACGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80869822 original size:13 final size:13
Alignment explanation
Indices: 80869804--80869828 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80869794 GGTTTGTTTA
80869804 TTAAACTAATTAT
1 TTAAACTAATTAT
80869817 TTAAACTAATTA
1 TTAAACTAATTA
80869829 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:80872777 original size:6 final size:6
Alignment explanation
Indices: 80872745--80872831 Score: 56
Period size: 6 Copynumber: 15.0 Consensus size: 6
80872735 TATGTCTTTC
* * * * * * *
80872745 AAAAT- AAAATA ATAATT GAAATG AAAATA AAAATC AAAAGA AAAAGA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
80872792 AAAA-G AAAAT- AAAATA AAAATA AAACTA AATAA-A AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA
80872832 GGAGGATTCA
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
5 16 0.25
6 47 0.73
7 1 0.02
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:80875276 original size:13 final size:13
Alignment explanation
Indices: 80875258--80875282 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80875248 AGAAAAAAAA
80875258 ATATGTGTATTTG
1 ATATGTGTATTTG
80875271 ATATGTGTATTT
1 ATATGTGTATTT
80875283 ATTTGTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
ATATGTGTATTTG
Found at i:80879215 original size:2 final size:2
Alignment explanation
Indices: 80879208--80879234 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80879198 AGGTGATAAC
80879208 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
80879235 AGAGAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80879782 original size:164 final size:164
Alignment explanation
Indices: 80879511--80879835 Score: 650
Period size: 164 Copynumber: 2.0 Consensus size: 164
80879501 GCTAACTTAA
80879511 ATTATGACATGTATAGGCTGGTTTTGAGATTGAATATTTTGGGAAATGTTGTAAATTAGCCATGC
1 ATTATGACATGTATAGGCTGGTTTTGAGATTGAATATTTTGGGAAATGTTGTAAATTAGCCATGC
80879576 GAAAATGGCTTAATTATCTTGCTTGAATTGTTTTTAGTTTAGTTGTGGTTGAAGTTTATTTTGAT
66 GAAAATGGCTTAATTATCTTGCTTGAATTGTTTTTAGTTTAGTTGTGGTTGAAGTTTATTTTGAT
80879641 TGAGATGCGATATGCCATGAATATATATATATAT
131 TGAGATGCGATATGCCATGAATATATATATATAT
80879675 ATTATGACATGTATAGGCTGGTTTTGAGATTGAATATTTTGGGAAATGTTGTAAATTAGCCATGC
1 ATTATGACATGTATAGGCTGGTTTTGAGATTGAATATTTTGGGAAATGTTGTAAATTAGCCATGC
80879740 GAAAATGGCTTAATTATCTTGCTTGAATTGTTTTTAGTTTAGTTGTGGTTGAAGTTTATTTTGAT
66 GAAAATGGCTTAATTATCTTGCTTGAATTGTTTTTAGTTTAGTTGTGGTTGAAGTTTATTTTGAT
80879805 TGAGATGCGATATGCCATGAATATATATATA
131 TGAGATGCGATATGCCATGAATATATATATA
80879836 CATGTGTAAA
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
164 161 1.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (164 bp):
ATTATGACATGTATAGGCTGGTTTTGAGATTGAATATTTTGGGAAATGTTGTAAATTAGCCATGC
GAAAATGGCTTAATTATCTTGCTTGAATTGTTTTTAGTTTAGTTGTGGTTGAAGTTTATTTTGAT
TGAGATGCGATATGCCATGAATATATATATATAT
Found at i:80883472 original size:40 final size:40
Alignment explanation
Indices: 80883345--80883474 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
80883335 ATGCTGGAAA
* * *
80883345 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
80883385 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
80883425 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80883465 TTATATCCGG
1 TTATATCCGG
80883475 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80888781 original size:13 final size:13
Alignment explanation
Indices: 80888763--80888787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80888753 TGTTTGTTTA
80888763 TTAAACTAATTAT
1 TTAAACTAATTAT
80888776 TTAAACTAATTA
1 TTAAACTAATTA
80888788 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:80890127 original size:12 final size:14
Alignment explanation
Indices: 80890110--80890141 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80890100 AGATAAACAC
80890110 ATGTGTA-GC-ACT
1 ATGTGTAGGCTACT
80890122 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
80890136 ATGTGT
1 ATGTGT
80890142 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 2 0.11
14 9 0.50
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:80890414 original size:101 final size:101
Alignment explanation
Indices: 80890309--80890490 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
80890299 GATGGTTAGG
* * * *
80890309 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATTG-ATAGGTCGCATGTGTAGTA
1 TCACGCGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGA-TGCATAAGTCACATGTGTAGTA
80890373 CTAAGTGCAGGCCACTATACATACCCATTAGCTTCGA
65 CTAAGTGCAGGCCACTATACATACCCATTAGCTTCGA
* * *
80890410 TCACGCGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGCATAAGTCACGTGTGTAGTAC
1 TCACGCGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGCATAAGTCACATGTGTAGTAC
* *
80890475 TAAGTGTAGGCTACTA
66 TAAGTGCAGGCCACTA
80890491 CGTGTACCAG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.03
101 69 0.97
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (101 bp):
TCACGCGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGCATAAGTCACATGTGTAGTAC
TAAGTGCAGGCCACTATACATACCCATTAGCTTCGA
Found at i:80890431 original size:151 final size:151
Alignment explanation
Indices: 80890153--80890530 Score: 589
Period size: 151 Copynumber: 2.5 Consensus size: 151
80890143 TAAGACAGTT
*
80890153 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTAC-CATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT-CGCATGTG
* * * * * * *
80890217 TAGTACTAAGTACAGGCTATTATACTTACCCGATAGTTTCGATCACGTGTGTAGTACTGAGTGCA
65 TAGTACTAAGTGCAGGCCACTATACATACCCGATAGCTTCGATCACGCGTGTAGTACTAAGTGCA
* *
80890282 GGCTACTACGTGTATCAGATGG
130 GCCTACTACGTGTATCAGATGC
* *
80890304 TTAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
80890369 AGTACTAAGTGCAGGCCACTATACATACCC-ATTAGCTTCGATCACGCGTGTAGTACTAAGTGCA
66 AGTACTAAGTGCAGGCCACTATACATACCCGA-TAGCTTCGATCACGCGTGTAGTACTAAGTGCA
80890433 GCCTACTACGTGTATCAGATGC
130 GCCTACTACGTGTATCAGATGC
* * *
80890455 ATAAGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
80890520 AGTACTAAGTG
66 AGTACTAAGTG
80890531 TACACTAATA
Statistics
Matches: 208, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
150 2 0.01
151 206 0.99
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCCACTATACATACCCGATAGCTTCGATCACGCGTGTAGTACTAAGTGCAG
CCTACTACGTGTATCAGATGC
Found at i:80890532 original size:50 final size:50
Alignment explanation
Indices: 80890153--80890530 Score: 370
Period size: 50 Copynumber: 7.5 Consensus size: 50
80890143 TAAGACAGTT
80890153 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
80890203 TTAGGT-ACCATGTGTAGTACTAAGTACAGGCTATTATAC-T-TACCCGATAG
1 TTAGGTCA-CGTGTGTAGTACTAAGTGCAGGCTA--CTACGTGTACCAGATTG
* * * * *
80890253 TTTCGATCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
80890304 TTAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * **** *
80890354 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCCACTATACATACC-CATTAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT-G
* * * * *
80890404 CTTCGATCACGCGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGA-TG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
80890454 CATAAGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
80890505 ATAGGTCGCATGTGTAGTACTAAGTG
1 TTAGGTCACGTGTGTAGTACTAAGTG
80890531 TACACTAATA
Statistics
Matches: 261, Mismatches: 56, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
49 7 0.03
50 181 0.69
51 68 0.26
52 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:80897682 original size:13 final size:13
Alignment explanation
Indices: 80897664--80897695 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
80897654 TTTTGAAGCT
80897664 AGAGATGTTAGAA
1 AGAGATGTTAGAA
80897677 AGAGATGTTAGAA
1 AGAGATGTTAGAA
80897690 AGAGAT
1 AGAGAT
80897696 CTTCGAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (13 bp):
AGAGATGTTAGAA
Found at i:80908122 original size:45 final size:45
Alignment explanation
Indices: 80908058--80908145 Score: 176
Period size: 45 Copynumber: 2.0 Consensus size: 45
80908048 GGATCAACCC
80908058 GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTCCT
1 GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTCCT
80908103 GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTC
1 GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTC
80908146 ACTTAACCAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (45 bp):
GAATACCCGATGATGATACTACCTGGCCCAGAAAACTAACTTCCT
Found at i:80910911 original size:40 final size:40
Alignment explanation
Indices: 80910801--80910943 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
80910791 GGATATAGCG
* * * *
80910801 ACTCGCTCAAAAGCCTTCGGGACATAG-CCCGGTTATAATA
1 ACTCGCACAAAAGCCTTCGGGA-ATTGACCCGGTTTTAGTA
* * * * *
80910841 GCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
* * *
80910881 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTC
1 ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
*
80910921 ACTTAGCACAAAAGCCTTCGGGA
1 AC-TCGCACAAAAGCCTTCGGGA
80910944 CTTAGCCGGG
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 65 0.77
41 18 0.21
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAAAGCCTTCGGGAATTGACCCGGTTTTAGTA
Found at i:80914660 original size:137 final size:136
Alignment explanation
Indices: 80914485--80914761 Score: 450
Period size: 137 Copynumber: 2.0 Consensus size: 136
80914475 ATACATATAT
* * *
80914485 GTGTGATAAGGCCGAATGGCCGATGTGGTGAATGTGAAAGTG-GATGTATATGTGATAAGGCCTA
1 GTGTGATAAGGCCGAAGGGCCGATGTGATGAATGTGAAAGTGTG-TATATATGTGATAAGGCCTA
* *
80914549 ATGGCCGATGTGATGAATGTGAAAATGGATGTA-TATGTGATGAGGCCTAATGGCCGATGTGATG
65 ATGGCCGATGTGAAGAATGTGAAAAT-G-TGTATTATGTGATAAGGCCTAATGGCCGATGTGATG
80914613 AATGTGAAA
128 AATGTGAAA
*
80914622 GTGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
1 GTGTGATAAGGCCGAAGGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
*
80914687 TGGCCGATGTGAAGAATGTGAAAGTGTGTATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 TGGCCGATGTGAAGAATGTGAAAATGTGTATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80914752 GTGAAA
131 GTGAAA
80914758 GTGT
1 GTGT
80914762 ATATATATGT
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
135 4 0.03
136 44 0.34
137 82 0.63
138 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.28
Consensus pattern (136 bp):
GTGTGATAAGGCCGAAGGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTGAAGAATGTGAAAATGTGTATTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAA
Found at i:80914684 original size:88 final size:88
Alignment explanation
Indices: 80914535--80914814 Score: 402
Period size: 97 Copynumber: 3.1 Consensus size: 88
80914525 TGGATGTATA
* * *
80914535 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG-GATGTATATGTGATGAGGCCTAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG-TATATATGTGATAAGGCCTAA
80914599 TGGCCGATGTGATGAATGTGAAAG
65 TGGCCGATGTGATGAATGTGAAAG
*
80914623 TGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAAT
*
80914688 GGCCGATGTGAAGAATGTGAAAGTGTG
66 GGCCGATGTGATGAATGTGAAA----G
*
80914715 TATTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 -----TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
80914780 CTAATGGCCGATGTGATGAATGTGAAAG
61 CTAATGGCCGATGTGATGAATGTGAAAG
80914808 TGT-ATAA
1 TGTGATAA
80914815 ATGTGATAAG
Statistics
Matches: 174, Mismatches: 8, Indels: 21
0.86 0.04 0.10
Matches are distributed among these distances:
87 4 0.02
88 83 0.48
89 1 0.01
92 1 0.01
93 1 0.01
97 84 0.48
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (88 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAG
Found at i:80914810 original size:49 final size:49
Alignment explanation
Indices: 80914479--80914824 Score: 484
Period size: 49 Copynumber: 7.3 Consensus size: 49
80914469 TATGATATAC
* * * *
80914479 ATATATGTGTGATAAGGCCGAATGGCCGATGTGGTGAATGTGAAAGTGG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
80914528 ATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGG
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
80914577 ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA--G-
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
80914623 -------TGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
80914665 GTATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
80914714 GTAT-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
80914762 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
80914811 ATA-A-ATGTGATAAG
1 ATATATATGTGATAAG
80914825 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 12, Indels: 24
0.88 0.04 0.08
Matches are distributed among these distances:
39 36 0.13
41 1 0.00
47 11 0.04
48 47 0.17
49 179 0.65
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:80931866 original size:50 final size:50
Alignment explanation
Indices: 80931745--80931963 Score: 253
Period size: 50 Copynumber: 4.3 Consensus size: 50
80931735 GTTGTGAGAA
* *
80931745 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAGA-T-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
80931797 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * * *
80931847 CGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * *
80931898 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
80931948 CACATGTGTAGTACTA
1 CACATGTGTAGTACTA
80931964 TGTAACACCC
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
48 4 0.03
49 2 0.01
50 64 0.45
51 40 0.28
52 32 0.23
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:80931930 original size:101 final size:102
Alignment explanation
Indices: 80931745--80931963 Score: 305
Period size: 101 Copynumber: 2.2 Consensus size: 102
80931735 GTTGTGAGAA
* ** * *
80931745 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAGATTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACAAGACAGATTTAGATCACATGTGTAGTA
* *
80931810 CTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
66 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGT
* * ** * *
80931847 CGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCCGATAG-TTTCGATCACATGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACAAGACAGATTTAGATCACATGTGTAGTA
*
80931911 CTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGT
66 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGT
80931948 CACATGTGTAGTACTA
1 CACATGTGTAGTACTA
80931964 TGTAACACCC
Statistics
Matches: 102, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
101 66 0.65
102 36 0.35
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (102 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACAAGACAGATTTAGATCACATGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGT
Found at i:80933112 original size:27 final size:27
Alignment explanation
Indices: 80932852--80933315 Score: 623
Period size: 27 Copynumber: 17.2 Consensus size: 27
80932842 AAAGTACTCC
80932852 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80932879 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
80932906 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80932933 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80932960 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
80932987 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80933014 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
80933041 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
80933068 CGATTTGTAAAAGTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80933095 CGATTTACAGAATTACCGTTTTAGCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
80933122 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
80933149 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80933176 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** *
80933203 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
80933230 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80933257 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
80933284 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80933311 TGATT
1 CGATT
80933316 GTGAAATTAC
Statistics
Matches: 383, Mismatches: 44, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.01
27 373 0.97
28 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:80933357 original size:27 final size:27
Alignment explanation
Indices: 80933320--80933515 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
80933310 TTGATTGTGA
*
80933320 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
80933347 AATTTTCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
80933374 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
80933401 AAGTACCAAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80933428 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80933455 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80933482 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
80933509 AATTACC
1 AATTACC
80933516 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80933389 original size:54 final size:54
Alignment explanation
Indices: 80933320--80933515 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
80933310 TTGATTGTGA
** *
80933320 AATTACTGAAATACCCTTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
80933374 AATTACTAAAATACCCTTATAGGATAGAAGTACCAAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
80933428 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
80933482 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
80933516 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 119 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:80933752 original size:27 final size:26
Alignment explanation
Indices: 80933714--80933796 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
80933704 CAGAGGAAGC
*
80933714 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
80933741 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
80933767 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
80933794 GTT
1 GTT
80933797 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:80933919 original size:22 final size:22
Alignment explanation
Indices: 80933891--80933942 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
80933881 TTAATGTCTC
80933891 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
80933913 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
80933935 CGTGCCAA
1 TGTGCCAA
80933943 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:80934128 original size:27 final size:27
Alignment explanation
Indices: 80934106--80934179 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
80934096 TAGGTGGGTT
*
80934106 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
80934133 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* **
80934160 TGTCATGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
80934180 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:80934306 original size:6 final size:6
Alignment explanation
Indices: 80934297--80934471 Score: 182
Period size: 6 Copynumber: 28.8 Consensus size: 6
80934287 TTGCATTCAC
*
80934297 ATTCTG ATTCTG ATTCTG -TCACGTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80934346 ATTTTG ATTCTG ATTCT- ATTACTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
80934395 ATTCTG ATTCTG ATTCCG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
80934443 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
80934472 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 12, Indels: 28
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.07
6 119 0.83
7 11 0.08
8 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80934416 original size:73 final size:77
Alignment explanation
Indices: 80934297--80934466 Score: 235
Period size: 73 Copynumber: 2.2 Consensus size: 77
80934287 TTGCATTCAC
* * *
80934297 ATTCTGATTCTGATTCTGTCACGTGATTCTGATTCTGATTCTGATTCTG-A-T-T-TTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCCGATTCTGTACTATATTGATTCTG
80934358 ATTCT-ATTACTG
66 ATTCTGATT-CTG
80934370 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCCGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCCGATTCTG-TACT-ATATTGATTC
80934435 TGATTCTGATTCTG
64 TGATTCTGATTCTG
80934449 -TTACTGATTCTGATTCTG
1 ATT-CTGATTCTGATTCTG
80934467 ATTCTCATTT
Statistics
Matches: 86, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
73 46 0.53
75 1 0.01
76 1 0.01
78 3 0.03
79 32 0.37
80 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (77 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCCGATTCTGTACTATATTGATTCTG
ATTCTGATTCTG
Found at i:80934489 original size:30 final size:29
Alignment explanation
Indices: 80934303--80934492 Score: 152
Period size: 30 Copynumber: 6.3 Consensus size: 29
80934293 TCACATTCTG
* **
80934303 ATTCTGATTCTG-TCACGTGATTCTGATTCTG
1 ATTCTGATTCTGAT-TC-TGATTCTG-TTCCA
* *
80934334 ATTCTGATTCTGATTTTGATTCTGATT-CT
1 ATTCTGATTCTGATTCTGATTCTG-TTCCA
*
80934363 ATTACTGATTCTGATTCTGATTCTGTCACCTA
1 ATT-CTGATTCTGATTCTGATTCTGT-TCC-A
* *
80934395 ATTCTGATTCTGATTCCGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGTT-CCA
**
80934425 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTT-CCA
* *
80934455 ATTCTGATTCTGATTCTCATTTTGGTTCCA
1 ATTCTGATTCTGATTCTGATTCT-GTTCCA
80934485 ATTCTGAT
1 ATTCTGAT
80934493 AATGTTTCTT
Statistics
Matches: 134, Mismatches: 16, Indels: 19
0.79 0.09 0.11
Matches are distributed among these distances:
29 5 0.04
30 86 0.64
31 39 0.29
32 4 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGATTCTGTTCCA
Found at i:80935365 original size:50 final size:50
Alignment explanation
Indices: 80935135--80935352 Score: 240
Period size: 50 Copynumber: 4.3 Consensus size: 50
80935125 GGGTGTTACA
** *
80935135 TACTAAGTGCAGGCTACTACGTGTACTGGATTGATAGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAG
* * * * * * *
80935185 TACTAAGTGCAGGATACTATGCGTACCTG-TTAACTTCGATCACATGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAG
* * * * * *
80935236 TACTAAGTGCAGCCTACTACGTATATCAGATGGATAAGTCACGTGTGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAG
** *
80935286 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCATGCGTAG
1 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAG
80935336 TACTAAGTGCAGGCTAC
1 TACTAAGTGCAGGCTAC
80935353 CATGCGTACC
Statistics
Matches: 134, Mismatches: 31, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 3 0.02
50 94 0.70
51 35 0.26
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAG
Found at i:80938287 original size:24 final size:24
Alignment explanation
Indices: 80938260--80938340 Score: 56
Period size: 24 Copynumber: 3.2 Consensus size: 24
80938250 TTTCTCTTTA
80938260 TGATACTACTATTATTGCATTGAT
1 TGATACTACTATTATTGCATTGAT
* * * * *
80938284 TGATCCTGGATCTATACATTTTCTCTTTAT
1 TGATACT--A-CTAT-TA-TTGC-ATTGAT
80938314 -GATACTACTATTATTGCATTGAT
1 TGATACTACTATTATTGCATTGAT
80938337 TGAT
1 TGAT
80938341 CCTGGATCTA
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
23 4 0.10
24 12 0.30
25 1 0.03
26 5 0.12
27 5 0.12
28 1 0.03
29 8 0.20
30 4 0.10
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (24 bp):
TGATACTACTATTATTGCATTGAT
Found at i:80938325 original size:53 final size:53
Alignment explanation
Indices: 80938245--80938350 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
80938235 TGATTACTGG
80938245 TACATTTTCTCTTTATGATACTACTATTATTGCATTGATTGATCCTGGATCTA
1 TACATTTTCTCTTTATGATACTACTATTATTGCATTGATTGATCCTGGATCTA
80938298 TACATTTTCTCTTTATGATACTACTATTATTGCATTGATTGATCCTGGATCTA
1 TACATTTTCTCTTTATGATACTACTATTATTGCATTGATTGATCCTGGATCTA
80938351 CTCATTCCTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (53 bp):
TACATTTTCTCTTTATGATACTACTATTATTGCATTGATTGATCCTGGATCTA
Found at i:80940683 original size:181 final size:181
Alignment explanation
Indices: 80940368--80940698 Score: 502
Period size: 181 Copynumber: 1.8 Consensus size: 181
80940358 CATCCGAGAT
*
80940368 CTGTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTCAGACAGTGAAACATGTG
1 CTGTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTCAGACAGTGAAACATGGG
** * * *
80940433 TATTTTTAATGAATAAACTATACTAATTGGCTAAACCAAAAATTATGAAAATTTTTTAGTAATAA
66 TAAATTTAATGAATAAACTATACTAATTGGCTAAACAAAAAATTATGAAAATTTTATAGTAAGAA
*
80940498 TATATGTAAGTATAGTTTTTTTGTAAAATTAGCTGTTCTTAATTTGGTGTC
131 TATATGTAAGTATAATTTTTTTGTAAAATTAGCTGTTCTTAATTTGGTGTC
* * ** *
80940549 CTGTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTTGGAACTGTTGGACAGTGAAATA-GGG
1 CTGTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTCAGACAGTGAAACATGGG
* * *
80940613 ATAAATTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTGAAAATTTTATGGTAAGA
66 -TAAATTTAATGAATAAACTATACTAATTGGCTAAACAAAAAATTATGAAAATTTTATAGTAAGA
*
80940678 ATATATGTGAGTATAATTTTT
130 ATATATGTAAGTATAATTTTT
80940699 GGGAAAATTA
Statistics
Matches: 133, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
180 2 0.02
181 131 0.98
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.36
Consensus pattern (181 bp):
CTGTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTCAGACAGTGAAACATGGG
TAAATTTAATGAATAAACTATACTAATTGGCTAAACAAAAAATTATGAAAATTTTATAGTAAGAA
TATATGTAAGTATAATTTTTTTGTAAAATTAGCTGTTCTTAATTTGGTGTC
Found at i:80949602 original size:47 final size:46
Alignment explanation
Indices: 80949497--80949624 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 46
80949487 ATATCTCGAG
* * **
80949497 GCCGATGGATGTCCCAGACATGTCTTACACTAGCTCTCGTTTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAT
* **
80949543 GCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATAAT
*
80949591 GGCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
80949625 ACACATCCAT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 19 0.27
47 27 0.38
48 25 0.35
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAT
Found at i:80949857 original size:21 final size:21
Alignment explanation
Indices: 80949833--80949899 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
80949823 ATCTTATCCC
80949833 ATCAAATCTCCATTGTATTCA
1 ATCAAATCTCCATTGTATTCA
**** * * *
80949854 ATC-AATGGAAAATGTTATCCC
1 ATCAAATCTCCATTG-TATTCA
80949875 ATCAAATCTCCATTGTATTCA
1 ATCAAATCTCCATTGTATTCA
80949896 ATCA
1 ATCA
80949900 TCACAAAAAT
Statistics
Matches: 30, Mismatches: 14, Indels: 4
0.62 0.29 0.08
Matches are distributed among these distances:
20 6 0.20
21 18 0.60
22 6 0.20
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (21 bp):
ATCAAATCTCCATTGTATTCA
Found at i:80949872 original size:42 final size:42
Alignment explanation
Indices: 80949813--80949899 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
80949803 CTTACTCGTT
80949813 TCAATGGAAAATCTTATCCCATCAAATCTCCATTGTATTCAA
1 TCAATGGAAAATCTTATCCCATCAAATCTCCATTGTATTCAA
*
80949855 TCAATGGAAAATGTTATCCCATCAAATCTCCATTGTATTCAA
1 TCAATGGAAAATCTTATCCCATCAAATCTCCATTGTATTCAA
80949897 TCA
1 TCA
80949900 TCACAAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (42 bp):
TCAATGGAAAATCTTATCCCATCAAATCTCCATTGTATTCAA
Found at i:80950461 original size:28 final size:27
Alignment explanation
Indices: 80950405--80950462 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
80950395 AACCTACAGG
* *
80950405 GTTTTCACACGGCCTGACACAAGCTCGT
1 GTTTTCACACGGCATGACAC-AGCCCGT
80950433 GTTTCTCACACGGTCATGACAC-GCCCGT
1 GTTT-TCACACGG-CATGACACAGCCCGT
80950461 GT
1 GT
80950463 CCTAGCCCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 11 0.42
29 8 0.31
30 7 0.27
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.26
Consensus pattern (27 bp):
GTTTTCACACGGCATGACACAGCCCGT
Found at i:80951586 original size:47 final size:46
Alignment explanation
Indices: 80951481--80951646 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 46
80951471 AGGCCAACGC
* *
80951481 CATGTCCCAGACATGGTCTTACACT-GACACAT-CTCATA--GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTC-TCCTAATATGGCCGATG
* *
80951526 CATGTCCCAGACATGTCTTAAACTAGCTCTCGTCTCA-AT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC--CTAATATGGCCGATG
* * *
80951572 CCATGTTCCAGACATGGTCTTACACTTGCTCTCCTAATATGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCCTAATATGGCCGATG
80951620 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
80951647 GTACAAATGA
Statistics
Matches: 103, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 11 0.11
45 16 0.16
46 26 0.25
47 28 0.27
48 21 0.20
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCCTAATATGGCCGATG
Found at i:80952368 original size:13 final size:13
Alignment explanation
Indices: 80952350--80952374 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80952340 TTAAAAGTGC
80952350 AAAAATCATCAAG
1 AAAAATCATCAAG
80952363 AAAAATCATCAA
1 AAAAATCATCAA
80952375 AATCACTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:80954169 original size:40 final size:40
Alignment explanation
Indices: 80954114--80954229 Score: 164
Period size: 40 Copynumber: 2.9 Consensus size: 40
80954104 AATGTGTCAT
*
80954114 GAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTTGTGC
1 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGC
*
80954154 GAGTTACTAAATCCGGGTTAAGTCCCGAATGC-TTTGTGC
1 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGC
* * *
80954193 CAGTTACTAGAA-CCGGGCTATGTCCCGAAGGCATTTG
1 GAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTG
80954230 AACGAGTAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 32 0.47
40 36 0.53
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGC
Found at i:80962163 original size:40 final size:39
Alignment explanation
Indices: 80962106--80962339 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 39
80962096 TCGAATGATG
* *
80962106 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
80962146 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
80962185 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
80962225 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
80962265 GTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 --T-C-----C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
80962314 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80962340 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 9, Indels: 32
0.80 0.04 0.15
Matches are distributed among these distances:
39 36 0.21
40 84 0.50
41 9 0.05
42 1 0.01
43 1 0.01
46 1 0.01
48 1 0.01
49 36 0.21
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:80962286 original size:49 final size:49
Alignment explanation
Indices: 80962214--80962311 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
80962204 GCATTTGTGC
80962214 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
80962263 GAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
80962312 TAACCGGGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
Found at i:80965976 original size:49 final size:49
Alignment explanation
Indices: 80965916--80966095 Score: 209
Period size: 49 Copynumber: 3.7 Consensus size: 49
80965906 CCATCAAGTT
80965916 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCC
** * * * * **
80965965 GACACTATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATCTCTGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATC-AAG-GCC
* * ** **
80966015 GATGCCATGTCCTAGACATGGTCTTACATTGACTATCAAAATTGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCC
80966064 GATGCCATGTCCCAGACATGGTCTTACACTGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGA
80966096 AACATCTCAT
Statistics
Matches: 105, Mismatches: 23, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
48 4 0.04
49 64 0.61
50 34 0.32
51 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCC
Found at i:80966039 original size:99 final size:99
Alignment explanation
Indices: 80965916--80966094 Score: 277
Period size: 99 Copynumber: 1.8 Consensus size: 99
80965906 CCATCAAGTT
*
80965916 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACACTATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCAGA
80965981 CATGGTCTTACACTGGCTCTCACATCTCTGTGCC
66 CATGGTCTTACACTGGCTCTCACATCTCTGTGCC
* * ** ** **
80966015 GATGCCATGTCCTAGACATGGTCTTACATTGACTATCAAAATTGAGGTTGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCAGA
80966080 CATGGTCTTACACTG
66 CATGGTCTTACACTG
80966095 AAACATCTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 71 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (99 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCGACACCATGTCCCAGA
CATGGTCTTACACTGGCTCTCACATCTCTGTGCC
Found at i:80967001 original size:13 final size:13
Alignment explanation
Indices: 80966983--80967007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80966973 CTAAAAGTGC
80966983 AAAAATCATCAAG
1 AAAAATCATCAAG
80966996 AAAAATCATCAA
1 AAAAATCATCAA
80967008 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:80969030 original size:40 final size:40
Alignment explanation
Indices: 80968985--80969113 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
80968975 GGAATACAAT
80968985 CGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCC
* * *
80969025 CGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
* * * * *
80969065 CGGATGTAGCCGCTAGCAC-AATTGTCTTCGGGTCTTAACC
1 CGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCC
80969105 CGGATATAA
1 CGGATATAA
80969114 TTTCCAGCAA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (40 bp):
CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
Found at i:80976122 original size:42 final size:42
Alignment explanation
Indices: 80976063--80976146 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
80976053 TTTTAGAGTG
* *
80976063 ACTTATTGAGCACATTCATCTCTATAAAATAGAGACTCTGGC
1 ACTTATTGAGCACATTCATCTCTATAAAACAGAAACTCTGGC
80976105 ACTTATTGAGCACATTCATCTCTATAAAACAGAAACTCTGGC
1 ACTTATTGAGCACATTCATCTCTATAAAACAGAAACTCTGGC
80976147 CCTTGTTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (42 bp):
ACTTATTGAGCACATTCATCTCTATAAAACAGAAACTCTGGC
Found at i:80980327 original size:24 final size:24
Alignment explanation
Indices: 80980280--80980327 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80980270 TCGTTCTGTG
*
80980280 GCAAAGGATGAATTAACGGTAAAT
1 GCAAAGGATGAATTAACGGAAAAT
* *
80980304 GCAAAGGATGAATTGATGGAAAAT
1 GCAAAGGATGAATTAACGGAAAAT
80980328 TACTCAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.06, G:0.27, T:0.21
Consensus pattern (24 bp):
GCAAAGGATGAATTAACGGAAAAT
Found at i:80981362 original size:17 final size:17
Alignment explanation
Indices: 80981340--80981373 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80981330 CAGATTATCA
80981340 GAAGCTCGATTGGGTTG
1 GAAGCTCGATTGGGTTG
* *
80981357 GAAGCTTGTTTGGGTTG
1 GAAGCTCGATTGGGTTG
80981374 TACCACACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.41, T:0.35
Consensus pattern (17 bp):
GAAGCTCGATTGGGTTG
Found at i:80982034 original size:14 final size:15
Alignment explanation
Indices: 80981986--80982035 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
80981976 TCTTTTTGCG
80981986 TTTTGCTATAGTTCGA
1 TTTTGCTATAGTTC-A
* *
80982002 TTATTGCTA-GGTGCA
1 TT-TTGCTATAGTTCA
80982017 TTTTGCTATAGTTC-
1 TTTTGCTATAGTTCA
80982031 TTTTG
1 TTTTG
80982036 TGCCCTTCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 11 0.39
15 6 0.21
16 5 0.18
17 6 0.21
ACGTcount: A:0.16, C:0.12, G:0.20, T:0.52
Consensus pattern (15 bp):
TTTTGCTATAGTTCA
Found at i:80982280 original size:20 final size:20
Alignment explanation
Indices: 80982255--80982292 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80982245 GTTTATTCGT
*
80982255 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
80982275 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
80982293 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:80987566 original size:18 final size:18
Alignment explanation
Indices: 80987543--80987580 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
80987533 CATGATTGAA
80987543 GCATTGCTAAAGTTAAAG
1 GCATTGCTAAAGTTAAAG
80987561 GCATTGCTAAAGTTAAAG
1 GCATTGCTAAAGTTAAAG
80987579 GC
1 GC
80987581 TAACTTGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (18 bp):
GCATTGCTAAAGTTAAAG
Found at i:80997587 original size:21 final size:21
Alignment explanation
Indices: 80997558--80997609 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
80997548 TTTTTCCTAA
*
80997558 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTAAATT
*
80997578 GA-GTTTAAATTGTATTAAATT
1 GATG-TTAAATTGGATTAAATT
80997599 GATGTTAAATT
1 GATGTTAAATT
80997610 TATTCGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.07
21 23 0.85
22 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
GATGTTAAATTGGATTAAATT
Found at i:81000505 original size:23 final size:22
Alignment explanation
Indices: 81000479--81000529 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
81000469 AAATAAGCAA
81000479 TAAGCTCTATTGAGCTGAAACAG
1 TAAGCTCT-TTGAGCTGAAACAG
* *
81000502 TAAGTTCTTTAAAGCT-AAACAG
1 TAAGCTCTTT-GAGCTGAAACAG
81000524 TAAGCT
1 TAAGCT
81000530 TGTACGAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (22 bp):
TAAGCTCTTTGAGCTGAAACAG
Found at i:81001428 original size:20 final size:20
Alignment explanation
Indices: 81001403--81001442 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81001393 CGAAACCTAA
81001403 AAGCTCAAAAATAGTTTCTT
1 AAGCTCAAAAATAGTTTCTT
81001423 AAGCTCAAAAATAGTTTCTT
1 AAGCTCAAAAATAGTTTCTT
81001443 TTCTCTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
AAGCTCAAAAATAGTTTCTT
Found at i:81002155 original size:27 final size:27
Alignment explanation
Indices: 81002120--81002258 Score: 156
Period size: 27 Copynumber: 5.1 Consensus size: 27
81002110 TAGTAAAGTT
* *
81002120 TGACCGAAATGCCCCCATAGGGTAAAA
1 TGACTGAAATACCCCCATAGGGTAAAA
81002147 TGACTGAAATACCCCCATAGGGTAAAA
1 TGACTGAAATACCCCCATAGGGTAAAA
*
81002174 TGA-TAAAAATACCCCTC-TAGGGTAAAA
1 TGACT-GAAATACCCC-CATAGGGTAAAA
* *
81002201 TGACTGAAATATCCCCATAAGGTAAAA
1 TGACTGAAATACCCCCATAGGGTAAAA
* * ** *
81002228 TGACCGTAATACCCCTGTATGGTAAAA
1 TGACTGAAATACCCCCATAGGGTAAAA
81002255 TGAC
1 TGAC
81002259 AATTATGCCC
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.02
27 92 0.96
28 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.21
Consensus pattern (27 bp):
TGACTGAAATACCCCCATAGGGTAAAA
Found at i:81002196 original size:54 final size:54
Alignment explanation
Indices: 81002137--81002258 Score: 172
Period size: 54 Copynumber: 2.3 Consensus size: 54
81002127 AATGCCCCCA
* *
81002137 TAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATAAAAATACCCCTC
1 TAGGGTAAAATGACTGAAATACCCCCATAAGGTAAAATGACAAAAATACCCCTC
* *** *
81002191 TAGGGTAAAATGACTGAAATATCCCCATAAGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACTGAAATACCCCCATAAGGTAAAATGACAAAAATACCCCTC
*
81002245 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
81002259 AATTATGCCC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (54 bp):
TAGGGTAAAATGACTGAAATACCCCCATAAGGTAAAATGACAAAAATACCCCTC
Found at i:81002698 original size:33 final size:33
Alignment explanation
Indices: 81002651--81002734 Score: 159
Period size: 33 Copynumber: 2.5 Consensus size: 33
81002641 TACTGTATAG
*
81002651 GGCTAAGGCCCAGACTGTACTGATACTAAATAA
1 GGCTCAGGCCCAGACTGTACTGATACTAAATAA
81002684 GGCTCAGGCCCAGACTGTACTGATACTAAATAA
1 GGCTCAGGCCCAGACTGTACTGATACTAAATAA
81002717 GGCTCAGGCCCAGACTGT
1 GGCTCAGGCCCAGACTGT
81002735 TATTGCATAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (33 bp):
GGCTCAGGCCCAGACTGTACTGATACTAAATAA
Found at i:81003713 original size:27 final size:26
Alignment explanation
Indices: 81003682--81003815 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 26
81003672 TAAAGTTTGG
* *
81003682 CCGAAATGCCCCCATATGGTAAAACGA
1 CCGAAAT-CCCCCATAAGGTAAAATGA
*
81003709 CCGAAATACCCCATAAGGTAAAATGA
1 CCGAAATCCCCCATAAGGTAAAATGA
** * *
81003735 ATGAAATACCCCATAGGGTAAAATGA
1 CCGAAATCCCCCATAAGGTAAAATGA
*
81003761 TCGAAATACCCCCATAAGGTAAAATGA
1 CCGAAAT-CCCCCATAAGGTAAAATGA
* ** *
81003788 CCGTAATACCCCTGTATGGTAAAATGA
1 CCGAAAT-CCCCCATAAGGTAAAATGA
81003815 C
1 C
81003816 GATTATGCCC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 44 0.48
27 47 0.52
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (26 bp):
CCGAAATCCCCCATAAGGTAAAATGA
Found at i:81003728 original size:26 final size:26
Alignment explanation
Indices: 81003682--81003815 Score: 151
Period size: 26 Copynumber: 5.0 Consensus size: 26
81003672 TAAAGTTTGG
* * *
81003682 CCGAAATGCCCCCATATGGTAAAACGA
1 CCGAAAT-ACCCCATAAGGTAAAATGA
81003709 CCGAAATACCCCATAAGGTAAAATGA
1 CCGAAATACCCCATAAGGTAAAATGA
** *
81003735 ATGAAATACCCCATAGGGTAAAATGA
1 CCGAAATACCCCATAAGGTAAAATGA
*
81003761 TCGAAATACCCCCATAAGGTAAAATGA
1 CCGAAATA-CCCCATAAGGTAAAATGA
* * *
81003788 CCGTAATACCCCTGTATGGTAAAATGA
1 CCGAAATACCCC-ATAAGGTAAAATGA
81003815 C
1 C
81003816 GATTATGCCC
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 49 0.53
27 43 0.47
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (26 bp):
CCGAAATACCCCATAAGGTAAAATGA
Found at i:81003780 original size:53 final size:52
Alignment explanation
Indices: 81003691--81003815 Score: 169
Period size: 53 Copynumber: 2.4 Consensus size: 52
81003681 GCCGAAATGC
* *
81003691 CCCCATATGGTAAAACGACCGAAATACCCCATAAGGTAAAATGAATGAAATA
1 CCCCATATGGTAAAATGACCGAAATACCCCATAAGGTAAAATGAACGAAATA
* * * *
81003743 CCCCATAGGGTAAAATGATCGAAATACCCCCATAAGGTAAAATGACCGTAATA
1 CCCCATATGGTAAAATGACCGAAATA-CCCCATAAGGTAAAATGAACGAAATA
*
81003796 CCCCTGTATGGTAAAATGAC
1 CCCC-ATATGGTAAAATGAC
81003816 GATTATGCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 23 0.37
53 27 0.44
54 12 0.19
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (52 bp):
CCCCATATGGTAAAATGACCGAAATACCCCATAAGGTAAAATGAACGAAATA
Found at i:81005291 original size:24 final size:23
Alignment explanation
Indices: 81005255--81005309 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
81005245 TATGTATCGG
** *
81005255 CAAAAGTCGAAATACCGAAAAGC
1 CAAAAGTTAAAATACCAAAAAGC
**
81005278 CGAAAAGTTAAAATGTCAAAAAGC
1 C-AAAAGTTAAAATACCAAAAAGC
81005302 CAAAAGTT
1 CAAAAGTT
81005310 TTGTTACGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.15
Consensus pattern (23 bp):
CAAAAGTTAAAATACCAAAAAGC
Found at i:81005586 original size:29 final size:28
Alignment explanation
Indices: 81005532--81005602 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 28
81005522 AATGTGACTA
* *
81005532 GGCCTAACGGGCCATATAAAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGATGA-TTG
* *
81005561 GGCCTAATGGGCCATATGAATATGATTG
1 GGCCTAATGGGCCATATAAAGATGATTG
* *
81005589 GTCTTAATGGGCCA
1 GGCCTAATGGGCCA
81005603 GATACAGGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAAAGATGATTG
Found at i:81009831 original size:8 final size:8
Alignment explanation
Indices: 81009802--81009876 Score: 69
Period size: 8 Copynumber: 9.4 Consensus size: 8
81009792 ATGTATCGGC
*
81009802 AAAAGTCG
1 AAAAGCCG
* *
81009810 AAATGCCA
1 AAAAGCCG
*
81009818 AAAAGCTG
1 AAAAGCCG
81009826 AAAAGCCG
1 AAAAGCCG
* *
81009834 AAATGCCA
1 AAAAGCCG
*
81009842 AAAAGCTG
1 AAAAGCCG
81009850 AAAAGCCG
1 AAAAGCCG
* *
81009858 AAATGCCA
1 AAAAGCCG
81009866 AAAAGCCG
1 AAAAGCCG
81009874 AAA
1 AAA
81009877 GTTTGGTTAT
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
8 50 1.00
ACGTcount: A:0.52, C:0.20, G:0.20, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:81009835 original size:24 final size:24
Alignment explanation
Indices: 81009802--81009876 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
81009792 ATGTATCGGC
*
81009802 AAAAGTCGAAATGCCAAAAAGCTG
1 AAAAGCCGAAATGCCAAAAAGCTG
81009826 AAAAGCCGAAATGCCAAAAAGCTG
1 AAAAGCCGAAATGCCAAAAAGCTG
*
81009850 AAAAGCCGAAATGCCAAAAAGCCG
1 AAAAGCCGAAATGCCAAAAAGCTG
81009874 AAA
1 AAA
81009877 GTTTGGTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.52, C:0.20, G:0.20, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATGCCAAAAAGCTG
Found at i:81010142 original size:28 final size:28
Alignment explanation
Indices: 81010111--81010176 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
81010101 GGGCCTAACA
**
81010111 GGCCATATAAAGGTGATTTGGGC-CAATG
1 GGCCATATAAAAATGA-TTGGGCTCAATG
* *
81010139 GGCCATAAAAAAATGATTGGGCTTAATG
1 GGCCATATAAAAATGATTGGGCTCAATG
*
81010167 GGCCAGATAA
1 GGCCATATAA
81010177 GGTATGTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.23
Consensus pattern (28 bp):
GGCCATATAAAAATGATTGGGCTCAATG
Found at i:81010858 original size:43 final size:43
Alignment explanation
Indices: 81010794--81011073 Score: 303
Period size: 43 Copynumber: 6.6 Consensus size: 43
81010784 TTAACTGCAT
* *
81010794 TTTCCCCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
* * * *
81010837 TTTCCACAGAAACGCCACTAAAGAACATGACCTTTAGCAACAC
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
* *
81010880 TTTCCCCAAAAACGCCATTAAAGAACATGACCTTTAGCAACGC
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
* * * * *
81010923 TTTCCTCAAAAATGCCATTAAAGAGCATGACCTTTAGCGGCGC
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
* * ** ** * **
81010966 TTTCCCTAAAAACGCCACTAAA-TACATGATTTTTAATGGCAT
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
* ** *
81011008 TTTCTCCTCAAACGCCGCTAAAG-ACATGACCTTTAGCGACGC
1 TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
*
81011050 TTTCCCCAAAAACTCCACTAAAGA
1 TTTCCCCAAAAACGCCACTAAAGA
81011074 CCATATCAAA
Statistics
Matches: 191, Mismatches: 44, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
42 59 0.31
43 132 0.69
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (43 bp):
TTTCCCCAAAAACGCCACTAAAGAACATGACCTTTAGCGACGC
Found at i:81011136 original size:40 final size:40
Alignment explanation
Indices: 81011081--81011160 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
81011071 AGACCATATC
*
81011081 AAATTAAACTTCCTTTTTAATCATCTTATTTACATTCTTA
1 AAATTAAACTTCCTTTTTAATCATCTCATTTACATTCTTA
81011121 AAATTAAACTTCCTTTTTAATCATCTCATTTACATTCTTA
1 AAATTAAACTTCCTTTTTAATCATCTCATTTACATTCTTA
81011161 CCTTAAATGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (40 bp):
AAATTAAACTTCCTTTTTAATCATCTCATTTACATTCTTA
Found at i:81011622 original size:23 final size:23
Alignment explanation
Indices: 81011596--81011695 Score: 139
Period size: 23 Copynumber: 4.3 Consensus size: 23
81011586 ACACAAAGAA
81011596 CATTTAAACACTTCAATTTACAG
1 CATTTAAACACTTCAATTTACAG
* * *
81011619 CATTTAAATACTTGAATTTATTA-
1 CATTTAAACACTTCAATTTA-CAG
*
81011642 CATTTAAAAACTTCAATTTACAG
1 CATTTAAACACTTCAATTTACAG
*
81011665 CATTTAAACACTTCAATTTACAA
1 CATTTAAACACTTCAATTTACAG
81011688 CATTTAAA
1 CATTTAAA
81011696 TAGCAGCAAC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
22 1 0.01
23 65 0.97
24 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (23 bp):
CATTTAAACACTTCAATTTACAG
Found at i:81011648 original size:46 final size:46
Alignment explanation
Indices: 81011594--81011695 Score: 159
Period size: 46 Copynumber: 2.2 Consensus size: 46
81011584 CTACACAAAG
* * * *
81011594 AACATTTAAACACTTCAATTTACAGCATTTAAATACTTGAATTTAT
1 AACATTTAAAAACTTCAATTTACAGCATTTAAACACTTCAATTTAC
*
81011640 TACATTTAAAAACTTCAATTTACAGCATTTAAACACTTCAATTTAC
1 AACATTTAAAAACTTCAATTTACAGCATTTAAACACTTCAATTTAC
81011686 AACATTTAAA
1 AACATTTAAA
81011696 TAGCAGCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (46 bp):
AACATTTAAAAACTTCAATTTACAGCATTTAAACACTTCAATTTAC
Found at i:81014952 original size:21 final size:21
Alignment explanation
Indices: 81014928--81014968 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
81014918 ATATATATGA
81014928 CAATCTATTGGAAGAAGATGG
1 CAATCTATTGGAAGAAGATGG
*
81014949 CAATCTGTTGGAAGAAGATG
1 CAATCTATTGGAAGAAGATG
81014969 AAAGCTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (21 bp):
CAATCTATTGGAAGAAGATGG
Found at i:81018259 original size:47 final size:48
Alignment explanation
Indices: 81018144--81018543 Score: 610
Period size: 49 Copynumber: 8.3 Consensus size: 48
81018134 GTATGAGATA
*
81018144 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGGTG
81018193 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
81018240 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
81018287 TACATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 T--ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
81018338 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
*
81018387 TATATATGTGATAAGGCCTCATGGCCGATGTGATGAATGTGAAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * *
81018435 TATAGATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
81018482 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
*
81018529 TATAAATGTGATAAG
1 TATATATGTGATAAG
81018544 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 13, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
47 108 0.32
48 46 0.14
49 176 0.53
51 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:81020564 original size:71 final size:73
Alignment explanation
Indices: 81020473--81020621 Score: 194
Period size: 71 Copynumber: 2.1 Consensus size: 73
81020463 TTCTGGTATA
* ** *
81020473 AAATAGAAGAACAGGTTGAGAAACGATGAGAAA-AAAAGGAAATTGGGAAAGAAAAGGGAA-TCG
1 AAATAGAAGAACAGGCTGAGAAACGATGAGAAAGAAAAGGAAATCAGGAAAGAAAAGGAAATTCG
81020536 GGGGAGAG
66 GGGGAGAG
* ** * * *
81020544 AAATAGAGGAACAGGCTGAGAATGGCTGAGAAAGAAAAGGAAATCAGGAAAGAAGAGGAAATTGG
1 AAATAGAAGAACAGGCTGAGAAACGATGAGAAAGAAAAGGAAATCAGGAAAGAAAAGGAAATTCG
81020609 GGGGAGAG
66 GGGGAGAG
81020617 AAATA
1 AAATA
81020622 AAACGGCGTC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
71 28 0.42
72 23 0.35
73 15 0.23
ACGTcount: A:0.50, C:0.05, G:0.36, T:0.10
Consensus pattern (73 bp):
AAATAGAAGAACAGGCTGAGAAACGATGAGAAAGAAAAGGAAATCAGGAAAGAAAAGGAAATTCG
GGGGAGAG
Found at i:81021107 original size:17 final size:18
Alignment explanation
Indices: 81021074--81021107 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81021064 TATCTCTTAA
81021074 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
81021092 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
81021108 AAAATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:81021213 original size:7 final size:7
Alignment explanation
Indices: 81021180--81021376 Score: 91
Period size: 7 Copynumber: 27.7 Consensus size: 7
81021170 ACTAATTAAT
81021180 CTAAACC
1 CTAAACC
*
81021187 CTTAACC
1 CTAAACC
*
81021194 C-ATATCC
1 CTA-AACC
81021201 CATAAACC
1 C-TAAACC
*
81021209 CTAAATC
1 CTAAACC
* *
81021216 ATAAAAC
1 CTAAACC
*
81021223 ATAAACC
1 CTAAACC
*
81021230 ATAAACC
1 CTAAACC
*
81021237 ATAAACCC
1 CTAAA-CC
81021245 CT-AACC
1 CTAAACC
81021251 CTAAACC
1 CTAAACC
*
81021258 TTAAATCC
1 CTAAA-CC
81021266 C--AACC
1 CTAAACC
81021271 CTTAAACC
1 C-TAAACC
*
81021279 ATAAACC
1 CTAAACC
* *
81021286 ATAATCC
1 CTAAACC
81021293 CTAAACC
1 CTAAACC
*
81021300 CATAATCC
1 C-TAAACC
*
81021308 ATAAACC
1 CTAAACC
*
81021315 TTAAA--
1 CTAAACC
*
81021320 ATAGTAACTC
1 CTA--AAC-C
*
81021330 CTAAAGC
1 CTAAACC
*
81021337 TTAAACC
1 CTAAACC
81021344 CTAAACC
1 CTAAACC
* *
81021351 ATATACC
1 CTAAACC
81021358 CTAAACC
1 CTAAACC
81021365 CTAAACC
1 CTAAACC
81021372 CTAAA
1 CTAAA
81021377 TTATAATGAT
Statistics
Matches: 146, Mismatches: 29, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
5 5 0.03
6 6 0.04
7 112 0.77
8 20 0.14
9 1 0.01
10 2 0.01
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:81021319 original size:22 final size:21
Alignment explanation
Indices: 81021181--81021376 Score: 103
Period size: 21 Copynumber: 9.2 Consensus size: 21
81021171 CTAATTAATC
* **
81021181 TAAACCCTTAACCCATATCCCA
1 TAAA-CCTTAAACCATAAACCA
* * *
81021203 TAAACCCTAAATCATAAAACA
1 TAAACCTTAAACCATAAACCA
* *
81021224 TAAACCATAAACCATAAACCCC
1 TAAACCTTAAACCATAAA-CCA
* *
81021246 T-AACCCTAAACCTTAAATCC-
1 TAAACCTTAAACCATAAA-CCA
* *
81021266 CAACCCTTAAACCATAAACCA
1 TAAACCTTAAACCATAAACCA
* * *
81021287 TAATCCCTAAACCCATAATCCA
1 TAAACCTTAAA-CCATAAACCA
*
81021309 TAAACCTTAAA--ATAGTAACTCC
1 TAAACCTTAAACCATA--AAC-CA
* *
81021331 TAAAGCTTAAACCCTAAACCA
1 TAAACCTTAAACCATAAACCA
* * * *
81021352 TATACCCTAAACCCTAAACCC
1 TAAACCTTAAACCATAAACCA
81021373 TAAA
1 TAAA
81021377 TTATAATGAT
Statistics
Matches: 132, Mismatches: 33, Indels: 19
0.72 0.18 0.10
Matches are distributed among these distances:
19 3 0.02
20 2 0.02
21 87 0.66
22 38 0.29
24 2 0.02
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.20
Consensus pattern (21 bp):
TAAACCTTAAACCATAAACCA
Found at i:81023208 original size:40 final size:40
Alignment explanation
Indices: 81023149--81023290 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
81023139 AAATTGAATG
* * *
81023149 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
81023189 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
81023229 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
81023269 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
81023291 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:81023291 original size:40 final size:39
Alignment explanation
Indices: 81023188--81023316 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
81023178 TGCTGGAAAT
* * *
81023188 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
81023228 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
81023268 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
81023308 TATATCCGG
1 TATATCCGG
81023317 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:81029118 original size:30 final size:29
Alignment explanation
Indices: 81029024--81029125 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
81029014 TATAGTGAAT
* * *
81029024 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
81029053 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
81029081 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
81029111 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
81029126 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:81034676 original size:29 final size:28
Alignment explanation
Indices: 81034619--81034733 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
81034609 TACCTATATC
* * *
81034619 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
* *
81034647 TGGCCCTTTAGGCCCAAATCACATGTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
*
81034676 TGGCCCATTAGGCTCAAATCACATTTATA
1 TGGCCCATTAGGC-CCAATCACATTTATA
* *
81034705 TGGCCCTTTAGGCCCAGTCACATTTATA
1 TGGCCCATTAGGCCCAATCACATTTATA
81034733 T
1 T
81034734 TCATGTTCAC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:81034706 original size:58 final size:56
Alignment explanation
Indices: 81034619--81034733 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 56
81034609 TACCTATATC
* *
81034619 TGGCCCATTAAGCCCAATCATATTCATATGGCCCTTTAGGCCCAAATCACATGTATA
1 TGGCCCATTAAGCCAAATCACATTCATATGGCCCTTTAGGCCC-AATCACATGTATA
* * * *
81034676 TGGCCCATTAGGCTCAAATCACATTTATATGGCCCTTTAGGCCCAGTCACATTTATA
1 TGGCCCATTAAGC-CAAATCACATTCATATGGCCCTTTAGGCCCAATCACATGTATA
81034733 T
1 T
81034734 TCATGTTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 24 0.47
58 27 0.53
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (56 bp):
TGGCCCATTAAGCCAAATCACATTCATATGGCCCTTTAGGCCCAATCACATGTATA
Found at i:81048543 original size:58 final size:57
Alignment explanation
Indices: 81048457--81048567 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 57
81048447 TGAATGTGAC
* *
81048457 TGGGCCTAATGGGCTATATAAATGTGATTTGGGCCTAATGGGCCAT-ATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCCTAATGGGCC-TGATACAGGTGATT
* * *
81048515 TGGGTCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCTGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCTGATACAGGT
81048568 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
56 1 0.02
57 23 0.49
58 23 0.49
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCTGATACAGGTGATT
Found at i:81048554 original size:28 final size:29
Alignment explanation
Indices: 81048444--81048557 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
81048434 TTGAACATGA
* *
81048444 ATATGAATGTGA-CTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
81048472 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
81048501 ATAT-ACAGGTGATTTGGGTCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
81048530 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
81048558 TGATACAGGT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:81053414 original size:51 final size:51
Alignment explanation
Indices: 81053350--81053485 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
81053340 TGGAAACATG
*
81053350 ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATAAGATATGGA
* * * * * * ** *
81053401 ATCTTATAAGATATTATTTTATAAG-ATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTAT-AGTCTTAGAGATCTTAGATAAGATATGGA
* *
81053452 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAGTCTTAGAGAT
81053486 TTGGTGGTAG
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
50 1 0.02
51 63 0.95
52 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATAAGATATGGA
Found at i:81056235 original size:51 final size:51
Alignment explanation
Indices: 81056171--81056306 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
81056161 TGGAAACATG
*
81056171 ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATAAGATATGGA
* * * * * * ** *
81056222 ATCTTATAAGATATTATTTTATAAG-ATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTAT-AGTCTTAGAGATCTTAGATAAGATATGGA
* *
81056273 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAGTCTTAGAGAT
81056307 TTGGTGGTAG
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
50 1 0.02
51 63 0.95
52 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAGTCTTAGAGATCTTAGATAAGATATGGA
Found at i:81060243 original size:49 final size:50
Alignment explanation
Indices: 81060165--81060278 Score: 119
Period size: 49 Copynumber: 2.3 Consensus size: 50
81060155 GCATGTTCTA
* *
81060165 GACAGGTCTTACACT-GACTTTTATATATCGATG-CTAATGCCATGTCC-C
1 GACAGGTCTTACACTAGACTCTCATATATCGATGTC-AATGCCATGTCCAC
* * * * *
81060213 AGATAGGTCTTACACTAG-CTCTCATCTATCGGTGTCGATTCCATGTCCAC
1 -GACAGGTCTTACACTAGACTCTCATATATCGATGTCAATGCCATGTCCAC
81060263 GACAGGTCTTACACTA
1 GACAGGTCTTACACTA
81060279 ACATAGAACA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
49 51 0.94
50 3 0.06
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (50 bp):
GACAGGTCTTACACTAGACTCTCATATATCGATGTCAATGCCATGTCCAC
Found at i:81065026 original size:28 final size:28
Alignment explanation
Indices: 81064965--81065062 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
81064955 TCACAAATTG
** * *
81064965 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
81064994 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
81065022 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
81065050 GCACTAAGTGTGC
1 GCACTAAGTGTGC
81065063 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:81072705 original size:28 final size:28
Alignment explanation
Indices: 81072644--81072741 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
81072634 TCACAAATTG
** * *
81072644 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
81072673 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
81072701 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
81072729 GCACTAAGTGTGC
1 GCACTAAGTGTGC
81072742 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:81079741 original size:68 final size:67
Alignment explanation
Indices: 81079669--81079818 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
81079659 CATCATGTGT
* * * *
81079669 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
81079731 ATGTAG
62 ATGTAG
** * *
81079737 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
81079802 AG
66 AG
81079804 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
81079819 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:81079774 original size:64 final size:64
Alignment explanation
Indices: 81079693--81079876 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
81079683 AGACATTATG
* *
81079693 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81079757 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81079822 AA
63 AA
* * * *
81079824 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81079877 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81080967 original size:2 final size:2
Alignment explanation
Indices: 81080960--81080997 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
81080950 TCATGACATG
*
81080960 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81080998 CTAGTCTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81084205 original size:68 final size:67
Alignment explanation
Indices: 81084133--81084282 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
81084123 CATCATGTGT
* * * *
81084133 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
81084195 ATGTAG
62 ATGTAG
** * *
81084201 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
81084266 AG
66 AG
81084268 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
81084283 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:81084238 original size:64 final size:64
Alignment explanation
Indices: 81084157--81084340 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
81084147 AGACATTATG
* *
81084157 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81084221 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81084286 AA
63 AA
* * * *
81084288 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81084341 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81087215 original size:27 final size:26
Alignment explanation
Indices: 81087177--81087236 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81087167 CCACATATAT
* *
81087177 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
81087203 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
81087230 ATATCTG
1 ATATCTG
81087237 ACAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:81089002 original size:12 final size:12
Alignment explanation
Indices: 81088985--81089014 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
81088975 GTTCTTACCG
81088985 AATAAAAAAGAA
1 AATAAAAAAGAA
81088997 AAT-AAAAAGAA
1 AATAAAAAAGAA
81089008 AATAAAA
1 AATAAAA
81089015 GGTTTTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (12 bp):
AATAAAAAAGAA
Found at i:81093602 original size:46 final size:44
Alignment explanation
Indices: 81093545--81093668 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 44
81093535 ATCTCGAGGC
* **
81093545 CGATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCTCAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT--C-TAACAATGTA
* * *
81093591 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTAAGAATGTGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTAACAATGT-A
81093636 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 -CGATGCATGTCCCAGACATGTCTTACACTAGC
81093669 ACACATATCA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
43 6 0.09
44 1 0.01
46 60 0.90
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTAACAATGTA
Found at i:81102388 original size:10 final size:10
Alignment explanation
Indices: 81102373--81102410 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
81102363 GAACACGTTG
81102373 AATTTTAATT
1 AATTTTAATT
81102383 AATTTTATAATT
1 AA-TTT-TAATT
81102395 AATTTTAATT
1 AATTTTAATT
81102405 AATTTT
1 AATTTT
81102411 GATCCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 13 0.50
11 6 0.23
12 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
AATTTTAATT
Found at i:81102395 original size:12 final size:11
Alignment explanation
Indices: 81102375--81102410 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
81102365 ACACGTTGAA
81102375 TTTTAATTAAT
1 TTTTAATTAAT
81102386 TTTATAATTAA-
1 TTT-TAATTAAT
81102397 TTTTAATTAAT
1 TTTTAATTAAT
81102408 TTT
1 TTT
81102411 GATCCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.30
11 9 0.39
12 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTAATTAAT
Found at i:81109063 original size:42 final size:43
Alignment explanation
Indices: 81109007--81109087 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
81108997 ATTATTTACA
* *
81109007 TGTAAGACCATGTCTGGGACA-TCGGCATC-ATATTTGATTTCG
1 TGTAAAACCATGTCTAGGACAGT-GGCATCGATATTTGATTTCG
* *
81109049 TGTAAAACCCTGTCTAGGATAGTGGCATCGATATTTGAT
1 TGTAAAACCATGTCTAGGACAGTGGCATCGATATTTGAT
81109088 GGCATGTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 23 0.70
43 10 0.30
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAAACCATGTCTAGGACAGTGGCATCGATATTTGATTTCG
Found at i:81109119 original size:43 final size:42
Alignment explanation
Indices: 81109005--81109119 Score: 99
Period size: 43 Copynumber: 2.7 Consensus size: 42
81108995 TTATTATTTA
* * ** **
81109005 CATGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTT
1 CATGTAAGAACACGTCTGGGATGTCGGCATCATATTTGATGG
* * *
81109047 CGTGTAA-AACCCTGTCTAGGATAGT-GGCATCGATATTTGATGG
1 CATGTAAGAACAC-GTCTGGGAT-GTCGGCATC-ATATTTGATGG
*
81109090 CATGTAAGATCACGTCTGGGATGTCGGCAT
1 CATGTAAGAACACGTCTGGGATGTCGGCAT
81109120 TGTATGAGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
41 2 0.04
42 21 0.38
43 29 0.53
44 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
CATGTAAGAACACGTCTGGGATGTCGGCATCATATTTGATGG
Found at i:81110712 original size:29 final size:28
Alignment explanation
Indices: 81110678--81110780 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81110668 TACTCAATCA
*
81110678 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
81110707 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
81110736 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
81110765 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81110781 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:81119712 original size:28 final size:28
Alignment explanation
Indices: 81119651--81119748 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
81119641 TCACAAATTG
** * *
81119651 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
81119680 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
81119708 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
81119736 GCACTAAGTGTGC
1 GCACTAAGTGTGC
81119749 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:81124321 original size:29 final size:28
Alignment explanation
Indices: 81124287--81124389 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
81124277 TACTCAATCA
*
81124287 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
81124316 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* * *
81124345 CTCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
81124374 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81124390 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:81129807 original size:6 final size:6
Alignment explanation
Indices: 81129751--81129924 Score: 88
Period size: 6 Copynumber: 28.3 Consensus size: 6
81129741 AAGAAACATT
* * * * * * *
81129751 ATCAGA A-CTAGA ATCAAA ATGAGT ATTAGA ATCAGA GTCACA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
81129799 ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * * *
81129849 ACCAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
81129898 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
81129925 GTGAATGCAA
Statistics
Matches: 124, Mismatches: 30, Indels: 28
0.68 0.16 0.15
Matches are distributed among these distances:
5 7 0.06
6 101 0.81
7 11 0.09
8 5 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:81129827 original size:31 final size:31
Alignment explanation
Indices: 81129796--81129902 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 31
81129786 AGTCACAATT
*
81129796 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
* *
81129827 AGAATCAGAATCAGGTAA-CA-G-AACCAGAATC
1 AGAATCAGAATCA-G-AATTAGGTGA-CAGAATC
*
81129858 AAAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
*
81129889 AGAATCAGTATCAG
1 AGAATCAGAATCAG
81129903 GTAACAGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 52 0.84
32 3 0.05
33 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATTAGGTGACAGAATC
Found at i:81129830 original size:25 final size:25
Alignment explanation
Indices: 81129796--81129865 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
81129786 AGTCACAATT
* *
81129796 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
81129821 AGAATTAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
81129846 AGAACCAGAATCAAAATCAG
1 AGAATCAGAATCAGAATCAG
81129866 AATCAGAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:81129872 original size:62 final size:62
Alignment explanation
Indices: 81129798--81129920 Score: 210
Period size: 62 Copynumber: 2.0 Consensus size: 62
81129788 TCACAATTAG
* *
81129798 AATCAGAATCAGAATTAGGTGACAGAATTAGAATCAGAATCAGGTAACAGAACCAGAATCAA
1 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCAA
* *
81129860 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCA
1 AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCA
81129921 GAATGTGAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (62 bp):
AATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCAA
Done.