Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 272 of 345
Found at i:81129888 original size:25 final size:25
Alignment explanation
Indices: 81129860--81129924 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
81129850 CCAGAATCAA
* *
81129860 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
81129885 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
81129910 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
81129925 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:81130111 original size:27 final size:27
Alignment explanation
Indices: 81130044--81130150 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
81130034 CATGGCTGCC
* * * *
81130044 AGAA-CAGATATTGTGACAGAGTCACC
1 AGAATCAGATATTGTGGCAAAGCCACT
81130070 AG-ATACAGATATTGTGGCAAAGCCACT
1 AGAAT-CAGATATTGTGGCAAAGCCACT
* *
81130097 AGAAT-AGATATTTGTGGCATAGCCACC
1 AGAATCAGATA-TTGTGGCAAAGCCACT
*
81130124 AGAATCAGATAATGTGGCAAAGCCACT
1 AGAATCAGATATTGTGGCAAAGCCACT
81130151 TAACAGAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
25 1 0.01
26 7 0.10
27 52 0.78
28 7 0.10
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (27 bp):
AGAATCAGATATTGTGGCAAAGCCACT
Found at i:81130126 original size:54 final size:53
Alignment explanation
Indices: 81130044--81130150 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 53
81130034 CATGGCTGCC
* *
81130044 AGAACAGATATTGTGACAGAGTCACCAG-ATACAGATATTGTGGCAAAGCCACT
1 AGAACAGATATTGTGACAGAGCCACCAGAAT-CAGATAATGTGGCAAAGCCACT
* * *
81130097 AGAATAGATATTTGTGGCATAGCCACCAGAATCAGATAATGTGGCAAAGCCACT
1 AGAACAGATA-TTGTGACAGAGCCACCAGAATCAGATAATGTGGCAAAGCCACT
81130151 TAACAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
53 9 0.19
54 36 0.77
55 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
AGAACAGATATTGTGACAGAGCCACCAGAATCAGATAATGTGGCAAAGCCACT
Found at i:81130175 original size:54 final size:54
Alignment explanation
Indices: 81130044--81130167 Score: 121
Period size: 54 Copynumber: 2.4 Consensus size: 54
81130034 CATGGCTGCC
* * * * *
81130044 AGAACAGATAT-TGTGACAGAGTCACCAGATACAGATATTGTGGCAAAGCCACT
1 AGAACAGATATACGTGGCAAAGCCACCAGATACAGATAATGTGGCAAAGCCACT
* ** *
81130097 AGAATAGATATTTGTGGCATAGCCACCAGA-ATCAGATAATGTGGCAAAGCCACT
1 AGAACAGATATACGTGGCAAAGCCACCAGATA-CAGATAATGTGGCAAAGCCACT
*
81130151 -TAACAGA-ATACGTGGCA
1 AGAACAGATATACGTGGCA
81130168 GAAAGCCATC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
52 8 0.13
53 16 0.27
54 36 0.60
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
AGAACAGATATACGTGGCAAAGCCACCAGATACAGATAATGTGGCAAAGCCACT
Found at i:81130742 original size:27 final size:27
Alignment explanation
Indices: 81130712--81131282 Score: 673
Period size: 27 Copynumber: 21.3 Consensus size: 27
81130702 AGGGAAAAAT
* * *
81130712 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81130739 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
81130766 AGTATTTCTACCGTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81130793 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81130820 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81130847 GATATTTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
81130873 GGTATTTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
81130900 AATAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81130926 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81130953 GGT-ATTACTACCTTACAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* * *
81130980 GATAATTGTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81131006 GGTAATTCTACCCTACAAGGGAATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
81131033 AATAATTCTACCATACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81131060 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81131087 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* ***
81131114 AGTAATTCTACCCTAGTGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
81131141 GCTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
81131168 AGTAATTCTACGTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81131195 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81131222 GATAATTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81131249 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
81131276 GGTAATT
1 GGTAATT
81131283 TTATAAATCG
Statistics
Matches: 460, Mismatches: 79, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
26 69 0.15
27 388 0.84
28 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81131296 original size:27 final size:27
Alignment explanation
Indices: 81131266--81131555 Score: 327
Period size: 27 Copynumber: 10.9 Consensus size: 27
81131256 CTACCCTACA
* *
81131266 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
81131293 AGGGTATTTTAGTAATTTTAC-AATCA
1 AGGGTATTTTGGTAATTTTACAAATCG
*
81131319 ACGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
81131346 AGGGTA-TTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
81131372 GGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*
81131399 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*
81131426 AGGGTATTTTAGTAATTTTACAAA-CTG
1 AGGGTATTTTGGTAATTTTACAAATC-G
* *
81131453 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
81131480 AGGGTATTTTAGTAATTTTAC-AATCA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * * *
81131506 ACGATATTTTGATAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
81131533 GGGGTACTTTGGTAATTTTACAA
1 AGGGTATTTTGGTAATTTTACAA
81131556 CTGGGGGTAT
Statistics
Matches: 218, Mismatches: 40, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 66 0.30
27 151 0.69
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:81131307 original size:54 final size:53
Alignment explanation
Indices: 81130713--81131353 Score: 336
Period size: 54 Copynumber: 11.9 Consensus size: 53
81130703 GGGAAAAATG
* * * * ***
81130713 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGA-GGGTATTTCA
* * * **
81130767 GTATTTCTACCGTACAAGGGTATTTCGGTAATTCTATCCTAC-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGA-GGGTATTTCA
* * *** * *
81130821 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAC-AAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGAGGGTATTTCA
* * * ** *** *
81130874 GTATTTCTATCCTATAGGGGTATTTCAATAATTCTACCCTAC-AGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGAGGGTATTTCA
* * * * *
81130927 GTATTTCTACCCTACAAGGGTATTTTGGT-ATTACTACCTTA-CAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT-CTA--TAATCGAGGGTATTTCA
* * *** * *
81130980 GATAATTGTACCCTATA-GGGTATTTCGGTAATTCTACCCTACAAGGGAATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGAGGGTATTTCA
* * ** * *** *
81131034 ATAATTCTACCATACAATGGTATTTCGATAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGAGGGTATTTCA
* *
81131088 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAGT-G-GGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA---TAATCGAGGGTATTTCA
* ** * * *
81131141 GCTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACGTTA-CAAGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTA--TAATCGAGGGTATTTCA
* *** * *
81131196 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAATGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAAT-CGAGGGTATTTCA
* * *
81131250 GTAATTCTACCCTACAAGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAT-AATCGAGGGTATTTCA
* ** ** * * *
81131304 GTAATTTTACAAT-CAACGGTATTTTGGTAATTTTACAAATCGAGGGTATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-TAATCGAGGGTATT
81131354 GGGTAATTTT
Statistics
Matches: 482, Mismatches: 84, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
52 3 0.01
53 156 0.32
54 320 0.66
55 2 0.00
57 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTATAATCGAGGGTATTTCA
Found at i:81131336 original size:53 final size:53
Alignment explanation
Indices: 81131266--81131576 Score: 301
Period size: 53 Copynumber: 5.8 Consensus size: 53
81131256 CTACCCTACA
* * *
81131266 AGGGTATTTCGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAATCA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCG
* ** * *
81131319 ACGGTATTTTGGTAATTTTACAAATCGAGGGTA-TTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTA-CAATCG
* * *
81131372 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCG
* *
81131426 AGGGTATTTTAGTAATTTTACAAA-CTGAGGGTA-TTTCGATAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATC-GAGGGTATTTTAG-TAATTTTAC-AATCG
* * * * * *
81131480 AGGGTATTTTAGTAATTTTAC-AATCAACGATATTTT-GATAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTTA-CAATCG
* * * * *
81131533 GGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT
81131577 GGTAAGCTAG
Statistics
Matches: 213, Mismatches: 35, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
52 11 0.05
53 117 0.55
54 85 0.40
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCG
Found at i:81133284 original size:40 final size:40
Alignment explanation
Indices: 81133239--81133405 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81133229 CGGAATATAA
81133239 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81133279 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81133319 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81133359 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81133398 CCGGATAT
1 CCGGATAT
81133406 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81141288 original size:40 final size:40
Alignment explanation
Indices: 81141243--81141410 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81141233 CGGAATATAA
81141243 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81141283 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81141323 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
81141363 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81141403 CCGGATAT
1 CCGGATAT
81141411 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81144791 original size:6 final size:6
Alignment explanation
Indices: 81144761--81144878 Score: 64
Period size: 6 Copynumber: 19.3 Consensus size: 6
81144751 TAAGAAACTT
* * * * * *
81144761 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA GTCACA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
81144809 ATCAGA ATCAGA A-CTAG- GTGACAGA ATTAGA ATCAGA ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATC-AGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
81144859 ACCAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
81144879 GAAAATTAGG
Statistics
Matches: 84, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
5 4 0.05
6 70 0.83
7 6 0.07
8 4 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81144837 original size:31 final size:31
Alignment explanation
Indices: 81144806--81144912 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 31
81144796 AGTCACAATT
*
81144806 AGAATCAGAATCAGAACTAGGTGACAGAATT
1 AGAATCAGAATCAGAACTAGGTGACAGAATC
*
81144837 AGAATCAGAATCAGGTAAC-A-G-AACCAGAATC
1 AGAATCAGAATCA-G-AACTAGGTGA-CAGAATC
* * * *
81144868 AAAATCAGAATGAAAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAACTAGGTGACAGAATC
*
81144899 AGAATCAGTATCAG
1 AGAATCAGAATCAG
81144913 GTAACAGAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
29 2 0.03
30 2 0.03
31 49 0.83
32 3 0.05
33 3 0.05
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAACTAGGTGACAGAATC
Found at i:81144840 original size:25 final size:25
Alignment explanation
Indices: 81144806--81144875 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
81144796 AGTCACAATT
*
81144806 AGAATCAGAATCAGAA-CTAGGTGAC
1 AGAATCAGAATCAGAATC-AGGTAAC
*
81144831 AGAATTAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
81144856 AGAACCAGAATCAAAATCAG
1 AGAATCAGAATCAGAATCAG
81144876 AATGAAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.20, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:81144941 original size:62 final size:62
Alignment explanation
Indices: 81144808--81144930 Score: 183
Period size: 62 Copynumber: 2.0 Consensus size: 62
81144798 TCACAATTAG
* * * * *
81144808 AATCAGAATCAGAACTAGGTGACAGAATTAGAATCAGAATCAGGTAACAGAACCAGAATCAA
1 AATCAGAATGAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCAA
* *
81144870 AATCAGAATGAAAATTAGGTGACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCA
1 AATCAGAATGAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCA
81144931 TAATGTGAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
AATCAGAATGAAAATTAGGTGACAGAATCAGAATCAGAATCAGGTAACAGAACCAAAATCAA
Found at i:81145087 original size:27 final size:26
Alignment explanation
Indices: 81145051--81145158 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
81145041 AGCATGGCTG
* *
81145051 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
81145077 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
81145104 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* * *
81145131 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
81145158 C
1 C
81145159 TTAACAGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 12 0.16
27 56 0.77
28 5 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:81145364 original size:22 final size:22
Alignment explanation
Indices: 81145316--81145374 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
81145306 GTAAATACGT
*
81145316 TTGGCACGAAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * * *
81145338 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAATCAAG
*
81145360 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
81145375 CTATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:81146185 original size:24 final size:24
Alignment explanation
Indices: 81146129--81146199 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 24
81146119 GGTATTTCAA
* *
81146129 TAATTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTA-AAGGG--GTGCAG
*
81146156 TAATTCTACCCTATAGGGGTGCAG
1 TAATTCTACCCTAAAGGGGTGCAG
81146180 TAATTCTACCCTAAAGGGGT
1 TAATTCTACCCTAAAGGGGT
81146200 ATTTCGGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 23 0.57
26 4 0.10
27 13 0.32
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
TAATTCTACCCTAAAGGGGTGCAG
Found at i:81146344 original size:27 final size:27
Alignment explanation
Indices: 81145723--81146338 Score: 705
Period size: 27 Copynumber: 22.9 Consensus size: 27
81145713 GGGGAAAATG
* * *
81145723 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
** * * *
81145750 ACAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81145777 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81145804 GTAATTCTATCCTGCAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81145831 GAAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81145857 GATATTTCTACCCTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * *
81145885 GTATTTCTATCCTA-GAGGAGTATTTCA
1 GTAATTCTACCCTACAAGG-GTATTTCA
* * *
81145912 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81145939 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
81145966 GT-ATTACTACCCTACAAGGGTATTTC-
1 GTAATT-CTACCCTACAAGGGTATTTCA
* *
81145992 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
81146020 GTAATTCTACCCCACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81146046 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
81146074 ATAATTCTACCATACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81146100 GATAATTCTACCATACAAGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
81146128 ATAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81146155 GTAATTCTACCCTA-TAGGG--GTGCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81146179 GTAATTCTACCCTA-AAGGGGTATTTCG
1 GTAATTCTACCCTACAA-GGGTATTTCA
*
81146206 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
** * *
81146233 GTAATTCTACATTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81146260 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81146286 GATAATTCTACCCTACAATGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
81146314 GTAATTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
81146339 TGGTAACTTT
Statistics
Matches: 500, Mismatches: 71, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
24 18 0.04
25 3 0.01
26 13 0.03
27 456 0.91
28 10 0.02
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:81146360 original size:27 final size:27
Alignment explanation
Indices: 81146330--81146640 Score: 258
Period size: 27 Copynumber: 11.6 Consensus size: 27
81146320 CTACCCTACA
* * *
81146330 AGGGTATTTTGGTAACTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
81146357 AGGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
81146383 ACGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
81146410 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
81146437 GGGGTACTTT-TGTAATTATACAAATAG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* * *
81146464 AGTGTA-TTCTAGTAATTTTACAAATCA
1 AGGGTATTTC-GGTAATTTTACAAATCG
* *
81146491 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
*
81146518 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
81146545 AGGGTATTTTAGTACTTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
81146571 ACGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
81146598 GGGGTACTTT-GGTAATTTTACAAGT-G
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* *
81146624 GGGGTATTTCAGTAATT
1 AGGGTATTTCGGTAATT
81146641 GGGTAAACTA
Statistics
Matches: 224, Mismatches: 50, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
25 5 0.02
26 55 0.25
27 155 0.69
28 9 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:81146363 original size:54 final size:54
Alignment explanation
Indices: 81145767--81146418 Score: 363
Period size: 54 Copynumber: 12.1 Consensus size: 54
81145757 TACCCTATAG
* * *** * *
81145767 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-AGTAATTCTATCCTGCAA
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTAAAATACGA
* * * * *** *
81145821 GGGTATTTCAGAAATTCTACCCTATAGGGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTAAAATACGA
* * * * * ***
81145875 GGGTATTTCGGTATTTCTATCCTA-GAGGAGTATTTCAATAATTCTACCCTAC-A
1 GGGTATTTCAGTAATTCTACCCTACAAGG-GTATTTCGATAATTCTAAAATACGA
* * *** *
81145928 GGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-AGT-ATTACTACCCTACAA
1 -GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATT-CTAAAATACGA
* * **** *
81145983 GGGTATTTC-GATAATTCTACCCTATAGGGGTATTTC-AGTAATTCTACCCCACAA
1 GGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGA-TAATTCTAAAATACGA
* * ** *
81146037 GGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCATACAA
1 GGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGATAATTCTAAAATACGA
* * *** *
81146091 GGGTATTTC-GATAATTCTACCATACAAGGGTATTTCAATAATTCTACCCTACAA
1 GGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGATAATTCTAAAATACGA
* * * *** *
81146145 GGGTATTTCAGTAATTCTACCCTA-TAGGG--GTGC-AGTAATTCTACCCTA-AA
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTAAAATACGA
* * * *
81146195 GGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC-AGTAATTCTACATTAC-A
1 -GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTAAAATACGA
* * *** *
81146249 GGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAA
1 -GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTAAAATACGA
* * *
81146304 TGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAACTT-TATAAAT-CGA
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAA-TTCTA-AAATACGA
* ** * *
81146358 GGGTATTTCAGTAATTTTACAAT-CAACGGTATTTCGATAATTTTACAAAT-CGA
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA-AAATACGA
*
81146411 GGATATTT
1 GGGTATTT
81146419 GGGTAATTTT
Statistics
Matches: 515, Mismatches: 61, Indels: 45
0.83 0.10 0.07
Matches are distributed among these distances:
50 3 0.01
51 37 0.07
52 6 0.01
53 42 0.08
54 412 0.80
55 15 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (54 bp):
GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTAAAATACGA
Found at i:81146495 original size:161 final size:161
Alignment explanation
Indices: 81146328--81146620 Score: 378
Period size: 161 Copynumber: 1.8 Consensus size: 161
81146318 TTCTACCCTA
** *
81146328 CAAGGGTATTTTGGTAACTTTATAAA-TCGAGGGTATTTCAGTAATTTTAC-AATCAACGGTATT
1 CAAGGGTATTTCAGTAACTTTACAAACT-GAGGGTATTTCAGTAATTTTACAAATCAACGGTATT
* * *
81146391 TCGA-TAATTTTACAAATCGA-GGATATTTGGGTAATTTTATAAACCGGGGGTACTTTTGTAATT
65 T-GAGTAATTTTAC-AATCGACGG-TATTTCGATAATTTTATAAACCGGGGGTACTTTGGTAATT
81146454 ATACAAATAGAGTGTATTCTAGTAATTTTACAAAT
127 ATACAAATAGAGTGTATTCTAGTAATTTTACAAAT
* * * ** *
81146489 CAAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCAGTAACTTTACAAACTGAGGGTATTTCAGTAATTTTACAAATCAACGGTATTT
* * * *
81146554 TAGTACTTTTACAATCGACGGTATTTCGATAATTTTATAAATCGGGGGTACTTTGGTAATTTTAC
66 GAGTAATTTTACAATCGACGGTATTTCGATAATTTTATAAACCGGGGGTACTTTGGTAATTATAC
81146619 AA
131 AA
81146621 GTGGGGGTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
161 90 0.80
162 22 0.20
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (161 bp):
CAAGGGTATTTCAGTAACTTTACAAACTGAGGGTATTTCAGTAATTTTACAAATCAACGGTATTT
GAGTAATTTTACAATCGACGGTATTTCGATAATTTTATAAACCGGGGGTACTTTGGTAATTATAC
AAATAGAGTGTATTCTAGTAATTTTACAAAT
Found at i:81148008 original size:20 final size:20
Alignment explanation
Indices: 81147970--81148008 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81147960 TGGTCCGTAA
* *
81147970 GCCCATTGGGCCCAGTTTTG
1 GCCCATCGGGCCCACTTTTG
*
81147990 GCCCATCGGGCCCTCTTTT
1 GCCCATCGGGCCCACTTTT
81148009 TCCGTAGTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.36, G:0.26, T:0.31
Consensus pattern (20 bp):
GCCCATCGGGCCCACTTTTG
Found at i:81159356 original size:6 final size:6
Alignment explanation
Indices: 81159326--81159427 Score: 93
Period size: 6 Copynumber: 16.7 Consensus size: 6
81159316 AAGAAACATT
* * *
81159326 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- ATGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
81159375 ATCAGA ATCAGA ATCAGGTA A-CAGA ACCAGA ATCAAA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
81159424 ATCA
1 ATCA
81159428 ATATCAGGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
5 5 0.06
6 64 0.80
7 7 0.09
8 4 0.05
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:81159381 original size:25 final size:25
Alignment explanation
Indices: 81159347--81159427 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
81159337 AATCAAAATG
* *
81159347 AGAATTAGAATCAGAATCAGATGAC
1 AGAATCAGAATCAGAATCAGATAAC
*
81159372 AGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGATAAC
* * *
81159397 AGAACCAGAATCAAAATCAGA-ATC
1 AGAATCAGAATCAGAATCAGATAAC
81159421 AGAATCA
1 AGAATCA
81159428 ATATCAGGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 8 0.17
25 40 0.83
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGATAAC
Found at i:81159388 original size:31 final size:30
Alignment explanation
Indices: 81159347--81159427 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 30
81159337 AATCAAAATG
*
81159347 AGAATTAGAATCAGAATCAGATGA-CAGAATC
1 AGAATCAGAATCAGAATCAGA--ACCAGAATC
81159378 AGAATCAGAATCAGGTAA-CAGAACCAGAATC
1 AGAATCAGAATCA-G-AATCAGAACCAGAATC
*
81159409 AAAATCAGAATCAGAATCA
1 AGAATCAGAATCAGAATCA
81159428 ATATCAGGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
29 2 0.05
30 4 0.09
31 31 0.70
32 5 0.11
33 2 0.05
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGAACCAGAATC
Found at i:81159456 original size:68 final size:68
Alignment explanation
Indices: 81159328--81159456 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 68
81159318 GAAACATTAT
* * * * *
81159328 CAGAACTAGAATCAAAATGAGAATTAGAATCAGAATCAGATGACAGAATCAGAATCAGAATCAGG
1 CAGAACCAGAATCAAAATCAGAATCAGAATCAGAATCAGATAACAGAATCAAAATCAGAATCAGG
81159393 TAA
66 TAA
* * *
81159396 CAGAACCAGAATCAAAATCAGAATCAGAATCA-ATATCAGGTAACAGAATGAAAATTAGAAT
1 CAGAACCAGAATCAAAATCAGAATCAGAATCAGA-ATCAGATAACAGAATCAAAATCAGAAT
81159457 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 1 0.02
68 51 0.98
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.18
Consensus pattern (68 bp):
CAGAACCAGAATCAAAATCAGAATCAGAATCAGAATCAGATAACAGAATCAAAATCAGAATCAGG
TAA
Found at i:81159672 original size:54 final size:53
Alignment explanation
Indices: 81159574--81159681 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 53
81159564 AGCATGGCTG
* * *
81159574 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
* *
81159627 CCAGAACAGATATTTGTCG-CATAGCCACCAGA-ATTAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGT-GACAGAGCCACCAGATA-CAGATAATGTGGCAAAGCCA
81159681 C
1 C
81159682 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 13 0.28
54 33 0.70
55 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
Found at i:81159679 original size:27 final size:26
Alignment explanation
Indices: 81159574--81159681 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
81159564 AGCATGGCTG
* * *
81159574 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
81159600 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
81159627 CCAGAACAGATATTTGTCGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
* *
81159654 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
81159681 C
1 C
81159682 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 12 0.17
27 54 0.76
28 5 0.07
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:81160259 original size:27 final size:27
Alignment explanation
Indices: 81160227--81160824 Score: 657
Period size: 27 Copynumber: 22.3 Consensus size: 27
81160217 TGGGGCAAAA
* * *
81160227 CGGTAATTTTACCCCACAAGGGTATCT
1 CGGTAATTCTACCCTACAAGGGTATTT
* * * *
81160254 CAGTAATTCTACCCCATAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
*
81160281 CGGTATTTCTACCCTAC-AGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160307 CGGTAATTCTATCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
**
81160334 CAATAATTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* * *
81160361 CGATATTTCTACCCTACAAAGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* * ** *
81160388 TGGTATTTCTATTCTACAAGGGCATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
** * *
81160415 CAATAATTCTACCCCACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160442 CGGTATTTCTACCTTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160469 CGGTATTTCTACGCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* * *
81160496 CGATAATTCTATCCTA-TAGAGGTATTT
1 CGGTAATTCTACCCTACAAG-GGTATTT
*
81160523 CAGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
*
81160550 CGGTAATTCTACCCTAC-ATGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
** **
81160576 CAATAATTCTACTATACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160603 CGATAATTCTACCCTATAAGGG-ATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
*
81160629 CGGTAATTCTATCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160656 CAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* * * *
81160683 CAGTAATTTTACCTTACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* ** *
81160710 CAGTAATTCTACATTACAGGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
* *
81160737 CGGTAATTCTACCCTATAGGGGTA-TT
1 CGGTAATTCTACCCTACAAGGGTATTT
*
81160763 CGGTAATTCTACCCTACAATGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
**
81160790 TAGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAAGGGTATTT
81160817 CGGTAATT
1 CGGTAATT
81160825 TTATAAATCG
Statistics
Matches: 480, Mismatches: 85, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
26 92 0.19
27 386 0.80
28 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAAGGGTATTT
Found at i:81160838 original size:27 final size:27
Alignment explanation
Indices: 81160808--81161118 Score: 278
Period size: 27 Copynumber: 11.7 Consensus size: 27
81160798 CTACCCTACA
*
81160808 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
81160835 AGGGTATTTTAGTAATTTTAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
81160861 ACGATATTTCGGTAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
81160888 AGGATATTTGGGTAACTTTATAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
81160915 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** *
81160942 AGGGTATTTTAGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
81160969 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
*
81160996 AGCGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
81161023 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
81161049 ATGATATTTCGGTAATTTTATAAA-CG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
81161075 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* *
81161101 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
81161119 GGTAAACTAG
Statistics
Matches: 230, Mismatches: 43, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
25 3 0.01
26 77 0.33
27 145 0.63
28 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:81160872 original size:107 final size:108
Alignment explanation
Indices: 81160227--81160877 Score: 549
Period size: 107 Copynumber: 6.1 Consensus size: 108
81160217 TGGGGCAAAA
* * * * * * * *
81160227 CGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCCATAGGGGTATTTCGGTATTTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
** * *
81160292 -CCCTAC-AGGGTATTTCGGTAATTCTATCC-TACAGGGGTATTT
66 TCAAT-CGAGGGTATTTCAGTAATTCTA-CCATACAAGGGTATTT
** * * * * *
81160334 CAATAATTCTACCCTACAAGGGTATTTC-GATATTTCTACCCTACAAAGGTATTTTGGTATTTCT
1 CGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGATAATTCT
* * * * ** *
81160398 ATTCTA-CAAGGGCATTTCAATAATTCTACCCCACAGGGGTATTT
65 A-TCAATCGAGGGTATTTCAGTAATTCTACCATACAAGGGTATTT
* * * * *
81160442 CGGTATTTCTACCTTACAAGGGTATTTCGGTATTTCTACGCTACAAGGGTATTTCGATAATTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
* * *
81160507 TCCTATAGA-GGTATTTCAGTAATTCTACCCTACAAGGGTATTT
66 T-CAATCGAGGGTATTTCAGTAATTCTACCATACAAGGGTATTT
* * **
81160550 CGGTAATTCTACCCTAC-ATGGTATTTCAATAATTCTACTATACAAGGGTATTTCGATAATTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
* * * *
81160614 CCCTAT-AAGGG-ATTTCGGTAATTCTATCC-TACAAGGGTATTT
66 -TCAATCGAGGGTATTTCAGTAATTCTA-CCATACAAGGGTATTT
* * * * *
81160656 CAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACCTTACAGGGGTATTTC-AGTAATTCT
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCT
* * * * *
81160720 A-CATTAC-AGGGGTATTTCGGTAATTCTACCCTATAGGGGTA-TT
65 ATCAAT-CGA-GGGTATTTCAGTAATTCTACCATACAAGGGTATTT
* * * *
81160763 CGGTAATTCTACCCTACAATGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
* * * * * *
81160828 TAAATCGAGGGTATTTTAGTAATTTTACAAT-CAACGATATTT
66 TCAATCGAGGGTATTTCAGTAATTCTACCATACAAGGGTATTT
81160870 CGGTAATT
1 CGGTAATT
81160878 TTACAAACCG
Statistics
Matches: 447, Mismatches: 75, Indels: 44
0.79 0.13 0.08
Matches are distributed among these distances:
105 2 0.00
106 51 0.11
107 234 0.52
108 157 0.35
109 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (108 bp):
CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
TCAATCGAGGGTATTTCAGTAATTCTACCATACAAGGGTATTT
Found at i:81160994 original size:81 final size:80
Alignment explanation
Indices: 81160812--81161118 Score: 345
Period size: 81 Copynumber: 3.8 Consensus size: 80
81160802 CCTACAAGGG
* * * * * *
81160812 TATTTCGGTAATTTTATAAA-TCGAGGGTATTTTAGTAATTTTACAATCAACGATATTTCGGTAA
1 TATTTCGGTAATTTTATAAACT-GAGGGTACTTTGGTAATTTTACAATCGAGGGTATTTCAGTAA
*
81160876 TTTTACAAACCGAGGA
65 TTTTACAAATCGAGGA
* * * *
81160892 TATTTGGGTAACTTTATAAACTGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAA
1 TATTTCGGTAATTTTATAAACTGAGGGTACTTTGGTAATTTTACAA-TCGAGGGTATTTCAGTAA
* *
81160957 TTTTACAAATTGAGGG
65 TTTTACAAATCGAGGA
* ** * *
81160973 TATTTCAGTAATTTTGCAAACTGAGCGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTA
1 TATTTCGGTAATTTTATAAACTGAGGGTACTTT-GGTAATTTTAC-AATCGAGGGTATTTCAGTA
*
81161037 ATTTTAC-AATCGATGA
64 ATTTTACAAATCGAGGA
* *
81161053 TATTTCGGTAATTTTATAAAC-GGGGGTACTTTGGTAATTTTACAA-CTGGGGGTATTTCAGTAA
1 TATTTCGGTAATTTTATAAACTGAGGGTACTTTGGTAATTTTACAATC-GAGGGTATTTCAGTAA
81161116 TTT
65 TTT
81161119 GGTAAACTAG
Statistics
Matches: 191, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
77 1 0.01
78 19 0.10
79 16 0.08
80 69 0.36
81 84 0.44
82 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
TATTTCGGTAATTTTATAAACTGAGGGTACTTTGGTAATTTTACAATCGAGGGTATTTCAGTAAT
TTTACAAATCGAGGA
Found at i:81162692 original size:22 final size:19
Alignment explanation
Indices: 81162664--81162705 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
81162654 TGATGATCTT
81162664 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
81162686 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
81162705 T
1 T
81162706 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:81163494 original size:25 final size:24
Alignment explanation
Indices: 81163427--81163494 Score: 57
Period size: 25 Copynumber: 2.7 Consensus size: 24
81163417 TTCTCCTAAA
* *
81163427 TTTTAATTTTATTCAATTATTTAAT
1 TTTTAA-TTAATTAAATTATTTAAT
* *
81163452 TTTTCAATTTATTGAATTATTAATAAT
1 TTTT-AATTAATTAAATTATT--TAAT
81163479 TTTT-ATTAATTAAATT
1 TTTTAATTAATTAAATT
81163495 TTTGAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 27 0.73
26 2 0.05
27 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (24 bp):
TTTTAATTAATTAAATTATTTAAT
Found at i:81166010 original size:41 final size:42
Alignment explanation
Indices: 81165961--81166068 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 42
81165951 TCGATGCGAT
* * *
81165961 TGTCCCAGACAGGGTCTTACACGAATCAAATA-CAATGCCGA
1 TGTCCCAGACATGGTCTTACACGAATCAAATATCAATACCAA
* * *
81166002 TGTCCCAGACATGGTCTTACACATAATCACATATCGATACCAA
1 TGTCCCAGACATGGTCTTACAC-GAATCAAATATCAATACCAA
* *
81166045 CGTCCCTGACATGGTCTTACACGA
1 TGTCCCAGACATGGTCTTACACGA
81166069 GAACACATAT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
41 21 0.38
42 9 0.16
43 26 0.46
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAATCAAATATCAATACCAA
Found at i:81168031 original size:6 final size:6
Alignment explanation
Indices: 81168022--81168211 Score: 129
Period size: 6 Copynumber: 30.8 Consensus size: 6
81168012 TTGCATTCAC
* * * *
81168022 ATTCTG ATTCTG ATTCTG -TTACCGG ATACTG ATTCTA ATTCTG -TTGCCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
81168072 ATTCTG ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * * * *
81168121 -TTACCTA ATTATG ATTCTA ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
81168171 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTT ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
81168212 AGTTTTGATA
Statistics
Matches: 143, Mismatches: 26, Indels: 30
0.72 0.13 0.15
Matches are distributed among these distances:
5 9 0.06
6 115 0.80
7 12 0.08
8 7 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81168053 original size:25 final size:25
Alignment explanation
Indices: 81168025--81168142 Score: 112
Period size: 25 Copynumber: 4.5 Consensus size: 25
81168015 CATTCACATT
* *
81168025 CTGATTCTGATTCTGTTACCGGATA
1 CTGATTCTAATTCTGTTACCTGATA
* *
81168050 CTGATTCTAATTCTGTTGCCTAATTCTGATT
1 CTGATTCTAATTCTG-T---T-A-CCTGATA
81168081 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTAATTCTGTTACCTGATA
* *
81168106 CTGATTCTGATTCTGTTACCTAATTA
1 CTGATTCTAATTCTGTTACCTGA-TA
81168132 -TGATTCTAATT
1 CTGATTCTAATT
81168143 TTGATTTTGA
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
25 50 0.65
26 4 0.05
27 1 0.01
29 1 0.01
30 2 0.03
31 19 0.25
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTAATTCTGTTACCTGATA
Found at i:81168057 original size:31 final size:31
Alignment explanation
Indices: 81168022--81168211 Score: 150
Period size: 31 Copynumber: 6.4 Consensus size: 31
81168012 TTGCATTCAC
81168022 ATTCTGATTCTGATTCTGTTACC-G-----G
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* * * *
81168047 ATACTGATTCTAATTCTGTTGCCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
81168078 ATTCTGATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
81168109 ATTCTGATTCTG-TTACCTAATTA--TGATTCTA
1 ATTCTGATTCTGATT--CT-GTTACCTGATTCTG
* * *
81168140 ATTTTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
*
81168171 ATTCTGATTCTGATTCTGATT--CTGATTCTT
1 ATTCTGATTCTGATTCTG-TTACCTGATTCTG
*
81168201 ATTTTGATTCT
1 ATTCTGATTCT
81168212 AGTTTTGATA
Statistics
Matches: 130, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
25 20 0.15
29 2 0.02
30 22 0.17
31 78 0.60
32 5 0.04
33 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:81168108 original size:56 final size:56
Alignment explanation
Indices: 81168022--81168138 Score: 189
Period size: 56 Copynumber: 2.1 Consensus size: 56
81168012 TTGCATTCAC
* * *
81168022 ATTCTGATTCTGATTCTGTTACCGGATACTGATTCTAATTCTGTTGCCTAATTCTG
1 ATTCTGATTCTAATTCTGTTACCGGATACTGATTCTAATTCTGTTACCTAATTATG
* *
81168078 ATTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTATG
1 ATTCTGATTCTAATTCTGTTACCGGATACTGATTCTAATTCTGTTACCTAATTATG
81168134 ATTCT
1 ATTCT
81168139 AATTTTGATT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (56 bp):
ATTCTGATTCTAATTCTGTTACCGGATACTGATTCTAATTCTGTTACCTAATTATG
Found at i:81168148 original size:37 final size:37
Alignment explanation
Indices: 81168107--81168220 Score: 124
Period size: 37 Copynumber: 3.1 Consensus size: 37
81168097 TACCTGATAC
81168107 TGATTCTGATTCTGTTACCTAATTATGATTCTAATTT
1 TGATTCTGATTCTGTTACCTAATTATGATTCTAATTT
* * * * * *
81168144 TGATTTTGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTAATTATGATTCTAATTT
* * *
81168181 TGATTCTGATTCTGATT--CTTATTTTGATTCTAGTTT
1 TGATTCTGATTCTG-TTACCTAATTATGATTCTAATTT
81168217 TGAT
1 TGAT
81168221 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
36 18 0.29
37 44 0.70
38 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (37 bp):
TGATTCTGATTCTGTTACCTAATTATGATTCTAATTT
Found at i:81168217 original size:12 final size:12
Alignment explanation
Indices: 81168169--81168220 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
81168159 CACCTGATTC
* *
81168169 TGATTCTGATTC
1 TGATTCTTATTT
* *
81168181 TGATTCTGATTC
1 TGATTCTTATTT
81168193 TGATTCTTATTT
1 TGATTCTTATTT
81168205 TGATTC-TAGTTT
1 TGATTCTTA-TTT
81168217 TGAT
1 TGAT
81168221 AATGTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
11 2 0.05
12 35 0.95
ACGTcount: A:0.17, C:0.12, G:0.15, T:0.56
Consensus pattern (12 bp):
TGATTCTTATTT
Found at i:81169582 original size:14 final size:15
Alignment explanation
Indices: 81169565--81169593 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81169555 TCACAAAAAT
81169565 TTCACACAT-ATAAA
1 TTCACACATAATAAA
81169579 TTCACACATAATAAA
1 TTCACACATAATAAA
81169594 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:81172113 original size:22 final size:23
Alignment explanation
Indices: 81172082--81172125 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
81172072 AAAATGTTGA
81172082 ATTTTAATTAATTTT-ATAATTG
1 ATTTTAATTAATTTTGATAATTG
*
81172104 ATTTTGATTAATTTTGATAATT
1 ATTTTAATTAATTTTGATAATT
81172126 TTTCGACAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (23 bp):
ATTTTAATTAATTTTGATAATTG
Found at i:81172296 original size:16 final size:16
Alignment explanation
Indices: 81172261--81172299 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81172251 TCATTATATA
* **
81172261 ATTAATTTTAATTTTT
1 ATTAAATTTAATTTGG
81172277 ATTAAATTTAATTTGG
1 ATTAAATTTAATTTGG
81172293 ATTAAAT
1 ATTAAAT
81172300 AAATTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (16 bp):
ATTAAATTTAATTTGG
Found at i:81177173 original size:12 final size:12
Alignment explanation
Indices: 81177156--81177180 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81177146 TTTAGCATGG
81177156 GGAGAGGAAGAA
1 GGAGAGGAAGAA
81177168 GGAGAGGAAGAA
1 GGAGAGGAAGAA
81177180 G
1 G
81177181 AAGATGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (12 bp):
GGAGAGGAAGAA
Found at i:81182469 original size:19 final size:19
Alignment explanation
Indices: 81182445--81182483 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
81182435 AACATGGTTT
81182445 ATGGAAATGGTATTCTGAA
1 ATGGAAATGGTATTCTGAA
81182464 ATGGAAATGGTATTCTGAA
1 ATGGAAATGGTATTCTGAA
81182483 A
1 A
81182484 CTACTAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (19 bp):
ATGGAAATGGTATTCTGAA
Found at i:81196835 original size:9 final size:9
Alignment explanation
Indices: 81196821--81196846 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81196811 TCAAGAATTA
81196821 AAATTATAC
1 AAATTATAC
81196830 AAATTATAC
1 AAATTATAC
81196839 AAATTATA
1 AAATTATA
81196847 ATGTTCAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (9 bp):
AAATTATAC
Found at i:81199581 original size:25 final size:25
Alignment explanation
Indices: 81199532--81199593 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
81199522 GAACTTATCA
* * *
81199532 TATCATAGCATATCATGCTAGATCG
1 TATCATAGCATATCATACCAAATCG
*
81199557 TATCATAACATATCATACCAAATCG
1 TATCATAGCATATCATACCAAATCG
*
81199582 AATCATAGCATA
1 TATCATAGCATA
81199594 ATAAATCATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (25 bp):
TATCATAGCATATCATACCAAATCG
Found at i:81200289 original size:12 final size:12
Alignment explanation
Indices: 81200272--81200303 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
81200262 GACCCTAAGA
81200272 AACCCAAATACC
1 AACCCAAATACC
81200284 AACCCAAATACC
1 AACCCAAATACC
*
81200296 AACTCAAA
1 AACCCAAA
81200304 GTGGCATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.38, G:0.00, T:0.09
Consensus pattern (12 bp):
AACCCAAATACC
Found at i:81201042 original size:38 final size:39
Alignment explanation
Indices: 81200987--81201066 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
81200977 AGTATATTGT
* **
81200987 CAACAGAAGCTCATAAGAGCTGGTCCTGTCGAA-CACGC
1 CAACAGAAGCTCATAAGAGCTGATCCACTCGAATCACGC
*
81201025 CAACAGAAGCTCGTAAGAGCTGATCCACTCGAATCACGC
1 CAACAGAAGCTCATAAGAGCTGATCCACTCGAATCACGC
81201064 CAA
1 CAA
81201067 ATAGAAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 29 0.78
39 8 0.22
ACGTcount: A:0.34, C:0.30, G:0.21, T:0.15
Consensus pattern (39 bp):
CAACAGAAGCTCATAAGAGCTGATCCACTCGAATCACGC
Found at i:81208448 original size:45 final size:44
Alignment explanation
Indices: 81208363--81208448 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 44
81208353 TATGTAATCT
* * *
81208363 GAACTCATTGAGTTGTGTTTGAGTTCATGATATATGTGACATCC
1 GAACTCATCGAGTTGTGTCTGAGTTCATGATATATATGACATCC
* * *
81208407 GAACTCATCGAGTTGTAGTCTGAGTTCGTGATCTGTATGACA
1 GAACTCATCGAGTTGT-GTCTGAGTTCATGATATATATGACA
81208449 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (44 bp):
GAACTCATCGAGTTGTGTCTGAGTTCATGATATATATGACATCC
Found at i:81220957 original size:28 final size:28
Alignment explanation
Indices: 81220892--81220992 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81220882 ATAGTGAATC
*
81220892 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
81220921 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81220949 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
81220979 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81220993 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81228912 original size:28 final size:28
Alignment explanation
Indices: 81228847--81228947 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81228837 ATAGTGAATC
*
81228847 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
81228876 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81228904 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
81228934 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81228948 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81244374 original size:39 final size:39
Alignment explanation
Indices: 81244280--81244414 Score: 162
Period size: 41 Copynumber: 3.4 Consensus size: 39
81244270 GTTTGAAACA
* * * *
81244280 AAAACACCGCTAAAAACTGAGTAATAGTGGCGTTTTAATCC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTT--TTC
81244321 AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTC
* *
81244360 AAAACGCTGCAAAAAACTGAGATATAGTGGCGCTTTATTTC
1 AAAACGCCGCAAAAAACTGAGAAATAGTGGCG-TTT-TTTC
* *
81244401 CAAACGCCACAAAA
1 AAAACGCCGCAAAA
81244415 GGTAGAGCTA
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
39 32 0.39
40 3 0.04
41 48 0.58
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (39 bp):
AAAACGCCGCAAAAAACTGAGAAATAGTGGCGTTTTTTC
Found at i:81245391 original size:20 final size:19
Alignment explanation
Indices: 81245341--81245391 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
81245331 CCCACCCAAA
* *
81245341 TTTCCCCAAATCCCTAACT
1 TTTCCCCGAATCCCTAAAT
*
81245360 TTTCCCCTAATCCCTAAAT
1 TTTCCCCGAATCCCTAAAT
*
81245379 ATTTCCTCGAATC
1 -TTTCCCCGAATC
81245392 AAAATTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.25, C:0.37, G:0.02, T:0.35
Consensus pattern (19 bp):
TTTCCCCGAATCCCTAAAT
Found at i:81246265 original size:31 final size:31
Alignment explanation
Indices: 81246222--81246285 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81246212 CCTTTTCATA
81246222 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
81246253 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
81246284 TT
1 TT
81246286 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:81246525 original size:24 final size:23
Alignment explanation
Indices: 81246498--81246605 Score: 81
Period size: 24 Copynumber: 4.6 Consensus size: 23
81246488 GGCCTAGCCT
81246498 CTTTTAATAACTGGAGAAAAAGGC
1 CTTTTAATAACTGGAGAAAAA-GC
* * *
81246522 CTTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGAGAAAAAGC
* * * *
81246545 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGAGAAAAAG-C
* * * * *
81246569 CATTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGAGAAAAAGC
*
81246592 CCTTTAATAACTGG
1 CTTTTAATAACTGG
81246606 GGCATAAGCC
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
23 36 0.48
24 39 0.52
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (23 bp):
CTTTTAATAACTGGAGAAAAAGC
Found at i:81246554 original size:23 final size:23
Alignment explanation
Indices: 81246500--81246619 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
81246490 CCTAGCCTCT
* * * *
81246500 TTTAATAACTGGAGAAAAAGGCCT
1 TTTAATAACTGGGGCATAA-GCCC
81246524 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
81246547 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
81246570 ATTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
81246594 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
81246617 TTT
1 TTT
81246620 TGCACTTCCT
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 51 0.57
24 38 0.43
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:81246579 original size:47 final size:47
Alignment explanation
Indices: 81246500--81246621 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
81246490 CCTAGCCTCT
* * * * *
81246500 TTTAATAACTGGAGAAAAAGGCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
81246547 TTTAATAACTGGGGCATAAGCCCATTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
81246594 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
81246622 CACTTCCTTC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:81246696 original size:20 final size:20
Alignment explanation
Indices: 81246671--81246736 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
81246661 TATAAACATC
81246671 TCATGTGCATATCATATATA
1 TCATGTGCATATCATATATA
*
81246691 TCATGTGCATATCATGTATA
1 TCATGTGCATATCATATATA
**
81246711 TCATGTGCATATCATACGTA
1 TCATGTGCATATCATATATA
81246731 TCATGT
1 TCATGT
81246737 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (20 bp):
TCATGTGCATATCATATATA
Found at i:81246702 original size:11 final size:11
Alignment explanation
Indices: 81246671--81246725 Score: 73
Period size: 11 Copynumber: 5.4 Consensus size: 11
81246661 TATAAACATC
81246671 TCATGTGCATA
1 TCATGTGCATA
*
81246682 TCATAT--ATA
1 TCATGTGCATA
81246691 TCATGTGCATA
1 TCATGTGCATA
81246702 TCATGT--ATA
1 TCATGTGCATA
81246711 TCATGTGCATA
1 TCATGTGCATA
81246722 TCAT
1 TCAT
81246726 ACGTATCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 17 0.45
11 21 0.55
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:81246804 original size:24 final size:24
Alignment explanation
Indices: 81246772--81246820 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
81246762 CATATATAAA
* * *
81246772 CCCTAGGGGTATAATGGTCATTTT
1 CCCTAGGGGCAAAACGGTCATTTT
81246796 CCCTAGGGGCAAAACGGTCATTTT
1 CCCTAGGGGCAAAACGGTCATTTT
81246820 C
1 C
81246821 ATATTACAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (24 bp):
CCCTAGGGGCAAAACGGTCATTTT
Found at i:81247962 original size:18 final size:17
Alignment explanation
Indices: 81247935--81247968 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
81247925 TAGGGAAGAA
81247935 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
81247952 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
81247969 GGCACAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:81254361 original size:31 final size:31
Alignment explanation
Indices: 81254318--81254381 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81254308 CCTTTTCATA
81254318 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
81254349 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
81254380 TT
1 TT
81254382 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:81254646 original size:23 final size:23
Alignment explanation
Indices: 81254592--81254734 Score: 232
Period size: 23 Copynumber: 6.1 Consensus size: 23
81254582 CCTAGCCTCT
* *
81254592 TTTAATAACTGGGGAAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
81254615 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
81254639 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
81254662 TTTTGATAACCGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
81254686 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
81254709 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
81254732 TTT
1 TTT
81254735 TGCACTTCCT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 70 0.62
24 42 0.38
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:81254661 original size:47 final size:47
Alignment explanation
Indices: 81254592--81254734 Score: 243
Period size: 47 Copynumber: 3.1 Consensus size: 47
81254582 CCTAGCCTCT
* *
81254592 TTTAATAACTGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
81254639 TTTAATAACTGGGGCATAAGCCCTTTTGATAACCGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
81254686 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
81254732 TTT
1 TTT
81254735 TGCACTTCCT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 24 0.27
47 66 0.73
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:81254704 original size:70 final size:71
Alignment explanation
Indices: 81254585--81254736 Score: 252
Period size: 70 Copynumber: 2.1 Consensus size: 71
81254575 CTGGAGGCCT
* *
81254585 AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTGATAACCGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
81254650 GGGCATA
65 GGGCATA
* *
81254657 AGCCCTTTTGATAACCGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTGATAACCGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
81254721 GGCATA
66 GGCATA
81254727 AGCCCTTTTG
1 AGCCCTTTTG
81254737 CACTTCCTCC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 51 0.67
71 21 0.28
72 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
AGCCCTTTTGATAACCGGGGAAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:81254811 original size:20 final size:20
Alignment explanation
Indices: 81254781--81254851 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
81254771 GCATTTATGA
*
81254781 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
81254801 ATATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
81254821 GCATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
81254841 ACGTATCATGT
1 ACATATCATGT
81254852 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:81254817 original size:11 final size:11
Alignment explanation
Indices: 81254786--81254840 Score: 73
Period size: 11 Copynumber: 5.4 Consensus size: 11
81254776 TATGAACATC
81254786 TCATGTGCATA
1 TCATGTGCATA
*
81254797 TCATAT--ATA
1 TCATGTGCATA
81254806 TCATGTGCATA
1 TCATGTGCATA
81254817 TCA--TGCATA
1 TCATGTGCATA
81254826 TCATGTGCATA
1 TCATGTGCATA
81254837 TCAT
1 TCAT
81254841 ACGTATCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 17 0.45
11 21 0.55
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:81254929 original size:24 final size:24
Alignment explanation
Indices: 81254888--81254934 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
81254878 ATATATAAAC
* * *
81254888 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
81254912 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
81254935 CATATTACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:81256082 original size:18 final size:17
Alignment explanation
Indices: 81256055--81256088 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
81256045 TAGGGAAGAA
81256055 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
81256072 AATATAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
81256089 GACACAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.06, G:0.18, T:0.12
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:81258407 original size:6 final size:7
Alignment explanation
Indices: 81258385--81258410 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
81258375 GGTTTATAGA
81258385 TTTGCTT
1 TTTGCTT
81258392 TTTGCTT
1 TTTGCTT
81258399 TTTGCTT
1 TTTGCTT
81258406 TTTGC
1 TTTGC
81258411 GTTTATATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69
Consensus pattern (7 bp):
TTTGCTT
Found at i:81259266 original size:63 final size:64
Alignment explanation
Indices: 81259194--81259326 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
81259184 TAATATTTCT
* *
81259194 ATATTTCTATTACGATTTTTAAT-AATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
*
81259257 ATATTTCTATCATGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
81259321 ATATTT
1 ATATTT
81259327 AATAAAATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
63 21 0.32
64 45 0.68
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.48
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:81259401 original size:24 final size:24
Alignment explanation
Indices: 81259374--81259420 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81259364 ATTATTATTG
* *
81259374 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGCCCGTTTTATCAC
81259398 AAATATTATCGCCCGTTTTATCA
1 AAATATTATCGCCCGTTTTATCA
81259421 TTTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (24 bp):
AAATATTATCGCCCGTTTTATCAC
Found at i:81259802 original size:9 final size:9
Alignment explanation
Indices: 81259783--81260031 Score: 213
Period size: 9 Copynumber: 28.2 Consensus size: 9
81259773 TTACTTACAA
*
81259783 AACTTACAT
1 AACTTATAT
81259792 AACTTATAT
1 AACTTATAT
*
81259801 AACTTAGAT
1 AACTTATAT
*
81259810 AA-ATATAT
1 AACTTATAT
*
81259818 AACTTATAC
1 AACTTATAT
*
81259827 AACTTACAT
1 AACTTATAT
*
81259836 AACTTAGAT
1 AACTTATAT
*
81259845 AA-ATATAT
1 AACTTATAT
*
81259853 AACTTACAT
1 AACTTATAT
*
81259862 AACTTAGAT
1 AACTTATAT
81259871 AACTTATAT
1 AACTTATAT
*
81259880 AACTTAGAT
1 AACTTATAT
*
81259889 AA-ATATAT
1 AACTTATAT
*
81259897 AACTTACAT
1 AACTTATAT
*
81259906 AACTTACAT
1 AACTTATAT
81259915 AACTTATAT
1 AACTTATAT
*
81259924 AACTTAGAT
1 AACTTATAT
*
81259933 AA-ATATAT
1 AACTTATAT
*
81259941 AACTTACAT
1 AACTTATAT
*
81259950 AACTTACAT
1 AACTTATAT
*
81259959 AACTTATAG
1 AACTTATAT
*
81259968 AACTTAGAT
1 AACTTATAT
*
81259977 AA-ATATAT
1 AACTTATAT
*
81259985 AACTTACAT
1 AACTTATAT
*
81259994 AA-ATATAT
1 AACTTATAT
* *
81260002 ATCATATCAT
1 AACTTAT-AT
*
81260012 AACTTACAT
1 AACTTATAT
*
81260021 AACTTACAT
1 AACTTATAT
81260030 AA
1 AA
81260032 TACTTAAATA
Statistics
Matches: 193, Mismatches: 40, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
8 35 0.18
9 152 0.79
10 6 0.03
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (9 bp):
AACTTATAT
Found at i:81259831 original size:35 final size:35
Alignment explanation
Indices: 81259783--81260031 Score: 205
Period size: 35 Copynumber: 6.8 Consensus size: 35
81259773 TTACTTACAA
* * *
81259783 AACTTACATAACTTATATAACTTAGATAAATATAT
1 AACTTATATAACTTACATAACTTACATAAATATAT
* *
81259818 AACTTATACAACTTACATAACTTAGATAAATATAT
1 AACTTATATAACTTACATAACTTACATAAATATAT
* *
81259853 AACTTACATAACTTAGATAACTTATATAACTTAGATAAATATAT
1 AAC-T---T-A--T--ATAACTTACATAACTTACATAAATATAT
* * * *
81259897 AACTTACATAACTTACATAACTTATATAACTTAGAT
1 AACTTATATAACTTACATAACTTACATAA-ATATAT
* * *
81259933 AA-ATATATAACTTACATAACTTACATAACTTATAG
1 AACTTATATAACTTACATAACTTACATAA-ATATAT
* * *
81259968 AACTTAGATAA-ATATATAACTTACATAAATATAT
1 AACTTATATAACTTACATAACTTACATAAATATAT
* *
81260002 ATCATATCATAACTTACATAACTTACATAA
1 AACTTAT-ATAACTTACATAACTTACATAA
81260032 TACTTAAATA
Statistics
Matches: 175, Mismatches: 26, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
34 8 0.05
35 104 0.59
36 28 0.16
39 2 0.01
40 2 0.01
42 1 0.01
43 1 0.01
44 29 0.17
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (35 bp):
AACTTATATAACTTACATAACTTACATAAATATAT
Found at i:81260013 original size:53 final size:53
Alignment explanation
Indices: 81259847--81260031 Score: 171
Period size: 53 Copynumber: 3.5 Consensus size: 53
81259837 ACTTAGATAA
* * *
81259847 ATAT-ATAACTTACATAACTTAGATAACTTATATAACTTAGATAAATATATAAC
1 ATATCATAACTTACATAACTTAGATAA-ATATATAACTTACATAAATATATATC
* * * * * * * * *
81259900 TTA-CATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTACATAAC
1 ATATCATAACTTACATAACTTAGATAA-ATATATAACTTACATAA-ATATATATC
* * *
81259953 TTA-CATAACTTATAGAACTTAGATAAATATATAACTTACATAAATATATATC
1 ATATCATAACTTACATAACTTAGATAAATATATAACTTACATAAATATATATC
*
81260005 ATATCATAACTTACATAACTTACATAA
1 ATATCATAACTTACATAACTTAGATAA
81260032 TACTTAAATA
Statistics
Matches: 107, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
52 20 0.19
53 87 0.81
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.36
Consensus pattern (53 bp):
ATATCATAACTTACATAACTTAGATAAATATATAACTTACATAAATATATATC
Found at i:81260014 original size:88 final size:89
Alignment explanation
Indices: 81259833--81260022 Score: 303
Period size: 88 Copynumber: 2.2 Consensus size: 89
81259823 ATACAACTTA
* *
81259833 CATAACTTAGATAAATATATAACTTACATAACTTAGATAACTTATATAACTTAGATAAATATATA
1 CATAACTTAGATAAATATATAACTTACATAACTTACATAACTTATAGAACTTAGATAAATATATA
* *
81259898 ACTTACATAACTTACATAACTTAT
66 ACTTACATAACATACATAACATAT
81259922 -ATAACTTAGATAAATATATAACTTACATAACTTACATAACTTATAGAACTTAGATAAATATATA
1 CATAACTTAGATAAATATATAACTTACATAACTTACATAACTTATAGAACTTAGATAAATATATA
* *
81259986 ACTTACATAA-ATATATATCATAT
66 ACTTACATAACATACATAACATAT
*
81260009 CATAACTTACATAA
1 CATAACTTAGATAA
81260023 CTTACATAAT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
87 9 0.10
88 84 0.90
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.35
Consensus pattern (89 bp):
CATAACTTAGATAAATATATAACTTACATAACTTACATAACTTATAGAACTTAGATAAATATATA
ACTTACATAACATACATAACATAT
Found at i:81260017 original size:44 final size:44
Alignment explanation
Indices: 81259775--81259995 Score: 343
Period size: 44 Copynumber: 5.2 Consensus size: 44
81259765 ATTTAACATT
*
81259775 ACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATA
1 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
*
81259819 AC-T---T-A--TAC--AACTTACATAACTTAGATAAATATATA
1 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
*
81259854 ACTTACATAACTTAGATAACTTATATAACTTAGATAAATATATA
1 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
81259898 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
1 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
*
81259942 ACTTACATAACTTACATAACTTATAGAACTTAGATAAATATATA
1 ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
81259986 ACTTACATAA
1 ACTTACATAA
81259996 ATATATATCA
Statistics
Matches: 162, Mismatches: 6, Indels: 18
0.87 0.03 0.10
Matches are distributed among these distances:
35 28 0.17
36 1 0.01
37 3 0.02
39 2 0.01
40 1 0.01
42 2 0.01
43 1 0.01
44 124 0.77
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (44 bp):
ACTTACATAACTTACATAACTTATATAACTTAGATAAATATATA
Found at i:81265239 original size:13 final size:14
Alignment explanation
Indices: 81265223--81265251 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81265213 TTCTAAATAT
81265223 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
81265236 TTATAATTGTTTAA
1 TTATAATTGTTTAA
81265250 TT
1 TT
81265252 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:81265701 original size:21 final size:21
Alignment explanation
Indices: 81265666--81265713 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
81265656 ACTTAGAGCT
*
81265666 GAGGCAGTAGAGAGGGAGGCA
1 GAGGCAGCAGAGAGGGAGGCA
* *
81265687 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGAGAGGGAGGCA
81265708 GAGGCA
1 GAGGCA
81265714 CGAGTGTGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.52, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGAGAGGGAGGCA
Found at i:81266000 original size:32 final size:32
Alignment explanation
Indices: 81265964--81266049 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 32
81265954 TTAGAATTAA
*
81265964 TGTTTTTGGTTGTATTTTTATGCTAAATTTGT
1 TGTTTTTGGTTGCATTTTTATGCTAAATTTGT
* *
81265996 TGTTTTTGGTTGCA-TTTTATACTATATTTGT
1 TGTTTTTGGTTGCATTTTTATGCTAAATTTGT
* * *
81266027 TGTATTTGGTTGGATTTTAATGC
1 TGTTTTTGGTTGCATTTTTATGC
81266050 AGGAAGGGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
31 27 0.59
32 19 0.41
ACGTcount: A:0.16, C:0.05, G:0.20, T:0.59
Consensus pattern (32 bp):
TGTTTTTGGTTGCATTTTTATGCTAAATTTGT
Found at i:81266384 original size:45 final size:44
Alignment explanation
Indices: 81266300--81266384 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
81266290 ATGTAATCTG
* * *
81266300 AACTCCTTGAGTTGTGTCTGAGTTCATGATATATTTGACATCCA
1 AACTCATTGAGCTGTGTCTGAGTTCATGATATATATGACATCCA
*
81266344 AACTCATTGAGCTGTGGTCTGAGTTCATGATATGTATGACA
1 AACTCATTGAGCTGT-GTCTGAGTTCATGATATATATGACA
81266385 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 13 0.36
45 23 0.64
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGCTGTGTCTGAGTTCATGATATATATGACATCCA
Found at i:81266608 original size:12 final size:12
Alignment explanation
Indices: 81266587--81266623 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
81266577 ATAGTATTCC
81266587 GAGT-GTTCAAT
1 GAGTAGTTCAAT
81266598 GAGTAGTTCAA-
1 GAGTAGTTCAAT
*
81266609 GAGAAGTTCAAT
1 GAGTAGTTCAAT
81266621 GAG
1 GAG
81266624 CAATCTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (12 bp):
GAGTAGTTCAAT
Found at i:81270965 original size:23 final size:23
Alignment explanation
Indices: 81270931--81270985 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
81270921 TTACTAGAGT
*
81270931 AACAGTCAGTATACAGAAACAGA
1 AACAGTCTGTATACAGAAACAGA
* *
81270954 AATAGTCTGTATACAGAAATAGA
1 AACAGTCTGTATACAGAAACAGA
81270977 AACAGTCTG
1 AACAGTCTG
81270986 GGCTAGAGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (23 bp):
AACAGTCTGTATACAGAAACAGA
Found at i:81275820 original size:29 final size:29
Alignment explanation
Indices: 81275788--81275860 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
81275778 CTTCGAGCTC
*
81275788 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
81275817 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
81275846 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
81275861 ATCTCATCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:81277820 original size:32 final size:33
Alignment explanation
Indices: 81277756--81277826 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
81277746 GTAGCAGTAT
* * **
81277756 TATAA-TTGCCACAAAGCCATCAGTAATTGTAA
1 TATAATTTGGCACAAAGCCATCAGCAACGGTAA
*
81277788 TA-AATTTGGCACATAGCCATCAGCAACGGTAA
1 TATAATTTGGCACAAAGCCATCAGCAACGGTAA
81277820 TATAATT
1 TATAATT
81277827 AGCACACAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.06
32 26 0.81
33 4 0.12
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.28
Consensus pattern (33 bp):
TATAATTTGGCACAAAGCCATCAGCAACGGTAA
Found at i:81277832 original size:32 final size:31
Alignment explanation
Indices: 81277756--81277837 Score: 76
Period size: 32 Copynumber: 2.5 Consensus size: 31
81277746 GTAGCAGTAT
* **
81277756 TATAATTGCCACAAAGCCATCAGTAATTGTAA
1 TATAATTG-CACAAAGCCATCAGCAACGGTAA
*
81277788 TA-AATTTGGCACATAGCCATCAGCAACGGTAA
1 TATAA-TT-GCACAAAGCCATCAGCAACGGTAA
*
81277820 TATAATTAGCACACAGCC
1 TATAATT-GCACAAAGCC
81277838 GTGAGTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
31 2 0.05
32 36 0.88
33 3 0.07
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (31 bp):
TATAATTGCACAAAGCCATCAGCAACGGTAA
Found at i:81279282 original size:18 final size:20
Alignment explanation
Indices: 81279246--81279292 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
81279236 AGTTGTAAAT
81279246 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
81279266 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
81279285 ATGATATA
1 AT-ATATA
81279293 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:81279815 original size:101 final size:101
Alignment explanation
Indices: 81279640--81279975 Score: 426
Period size: 101 Copynumber: 3.3 Consensus size: 101
81279630 ATCTGTTGTG
81279640 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAG
81279705 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
66 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * *
81279741 AGTCATGTGTGTAGTACTAAGTGTAGGCTTCTATGCGTACCCGTTAACTTCGATCACGTGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAG
*
81279806 TGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
66 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * * * * *
81279842 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCGCATGTGTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-CTAACTTCGATCACGTGTGTA
* * * * * **
81279905 GTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTT-
65 GTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTA
*
81279942 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTA
81279976 CGTGTATCAG
Statistics
Matches: 207, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
100 38 0.18
101 166 0.80
102 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
Found at i:81279920 original size:151 final size:151
Alignment explanation
Indices: 81279642--81280025 Score: 554
Period size: 151 Copynumber: 2.5 Consensus size: 151
81279632 CTGTTGTGAG
* * * * * ** *
81279642 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGCTAACTT-CGATCACGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAAG-TCACGTGTGTAGT
* * ** * *
81279706 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCATGTGTGTAGTACTAAGTGTAGGCTT
64 ACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTA
*
81279771 CTATGCGTACCCGTTAACTTCGA
129 CTATGCGTACCCGCTAACTTCGA
*
81279794 TCACGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
* * *
81279859 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACT
81279924 ATGCGTACCCGCTAACTTCGA
131 ATGCGTACCCGCTAACTTCGA
*
81279945 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
*
81280010 TAAGTGTAGGCTACTA
66 TAAGTGCAGGCTACTA
81280026 TGCTACCAGA
Statistics
Matches: 209, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
151 171 0.82
152 38 0.18
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACT
ATGCGTACCCGCTAACTTCGA
Found at i:81279976 original size:101 final size:100
Alignment explanation
Indices: 81279844--81280032 Score: 297
Period size: 101 Copynumber: 1.9 Consensus size: 100
81279834 GATGGTTAAG
* * *
81279844 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
81279909 TAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGA
66 TAAGTGCAGGCTACTATGC-TACCCGCTAACTTCGA
* * **
81279945 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
*
81280010 TAAGTGTAGGCTACTATGCTACC
66 TAAGTGCAGGCTACTATGCTACC
81280033 AGAGAGCTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 4 0.05
101 76 0.95
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCTACCCGCTAACTTCGA
Found at i:81282205 original size:27 final size:27
Alignment explanation
Indices: 81282175--81282426 Score: 260
Period size: 27 Copynumber: 9.3 Consensus size: 27
81282165 TACACTACAA
*
81282175 GGGTATTTCAGTAATTTCACAAATTGG
1 GGGTATTTCAGTAATTTTACAAATTGG
* *
81282202 GGGTATTTTAGTAATTTTACAAACTGG
1 GGGTATTTCAGTAATTTTACAAATTGG
81282229 GGGTATTTCAAG-AATTTTACAAATTGG
1 GGGTATTTC-AGTAATTTTACAAATTGG
**
81282256 GGGTATTTCAGTAATTTTACAAACCGAG
1 GGGTATTTCAGTAATTTTACAAATTG-G
*
81282284 GGTGT-TTTGA-TAATTTTACAAATTGG
1 GG-GTATTTCAGTAATTTTACAAATTGG
* * **
81282310 TGGTATTTCAGTAATTTTACATATCAG
1 GGGTATTTCAGTAATTTTACAAATTGG
** * *
81282337 GGGTATTTTGGTAATTTTAGAAACTGG
1 GGGTATTTCAGTAATTTTACAAATTGG
* *
81282364 GGGTACTTC-GATAATTTTACAAATCGG
1 GGGTATTTCAG-TAATTTTACAAATTGG
* * * *
81282391 GGTTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATTGG
81282418 GGGTATTTC
1 GGGTATTTC
81282427 GATTATTTTA
Statistics
Matches: 183, Mismatches: 34, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 9 0.05
27 160 0.87
28 10 0.05
29 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATTGG
Found at i:81282261 original size:81 final size:80
Alignment explanation
Indices: 81282175--81282426 Score: 292
Period size: 81 Copynumber: 3.1 Consensus size: 80
81282165 TACACTACAA
* *
81282175 GGGTATTTCAGTAATTTCACAAATTGGGGGTATTTT-AGTAATTTTACAAACTGGGGGTATTTCA
1 GGGTATTTCAGTAATTTTACAAACTGGGGGTATTTTGA-TAATTTTACAAA-TGGGGGTATTTC-
*
81282239 AG-AATTTTACAAATTGG
63 AGTAATTTTACAAATCGG
* * * *
81282256 GGGTATTTCAGTAATTTTACAAACCGAGGGTGTTTTGATAATTTTACAAATTGGTGGTATTTCAG
1 GGGTATTTCAGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAA-TGGGGGTATTTCAG
* *
81282321 TAATTTTACATATCAG
65 TAATTTTACAAATCGG
** * * * * *
81282337 GGGTATTTTGGTAATTTTAGAAACTGGGGGTACTTCGATAATTTTACAAATCGGGGTTATTTTAG
1 GGGTATTTCAGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAAT-GGGGGTATTTCAG
*
81282402 TAATTTTACAAATCGA
65 TAATTTTACAAATCGG
81282418 GGGTATTTC
1 GGGTATTTC
81282427 GATTATTTTA
Statistics
Matches: 143, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
80 3 0.02
81 139 0.97
82 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAACTGGGGGTATTTTGATAATTTTACAAATGGGGGTATTTCAGT
AATTTTACAAATCGG
Found at i:81282434 original size:27 final size:27
Alignment explanation
Indices: 81282156--81282437 Score: 181
Period size: 27 Copynumber: 10.4 Consensus size: 27
81282146 AGCGGTACTA
* *
81282156 CGATAATTTTAC-ACTACAAGGGTATTT
1 CGATAATTTTACAAAT-CGAGGGTATTT
* * *
81282183 C-AGTAATTTCACAAATTGGGGGTATTT
1 CGA-TAATTTTACAAATCGAGGGTATTT
* *
81282210 -TAGTAATTTTACAAA-CTGGGGGTATTT
1 CGA-TAATTTTACAAATC-GAGGGTATTT
* * * *
81282237 CAAGAATTTTACAAATTGGGGGTATTT
1 CGATAATTTTACAAATCGAGGGTATTT
* *
81282264 C-AGTAATTTTACAAACCGAGGGTGTTT
1 CGA-TAATTTTACAAATCGAGGGTATTT
* *
81282291 TGATAATTTTACAAATTG-GTGGTATTT
1 CGATAATTTTACAAATCGAG-GGTATTT
*
81282318 C-AGTAATTTTACATATC-AGGGGTATTT
1 CGA-TAATTTTACAAATCGA-GGGTATTT
* * * * *
81282345 TGGTAATTTTAGAAA-CTGGGGGTACTT
1 CGATAATTTTACAAATC-GAGGGTATTT
81282372 CGATAATTTTACAAATCG-GGGTTATTT
1 CGATAATTTTACAAATCGAGGG-TATTT
*
81282399 -TAGTAATTTTACAAATCGAGGGTATTT
1 CGA-TAATTTTACAAATCGAGGGTATTT
*
81282426 CGATTATTTTAC
1 CGATAATTTTAC
81282438 GAACCGAGAT
Statistics
Matches: 200, Mismatches: 35, Indels: 40
0.73 0.13 0.15
Matches are distributed among these distances:
26 9 0.05
27 181 0.90
28 10 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CGATAATTTTACAAATCGAGGGTATTT
Found at i:81283713 original size:34 final size:34
Alignment explanation
Indices: 81283675--81283753 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
81283665 GAAATGACAA
* * * *
81283675 AAAGGAATAGGAAAAAGGTGTCTAGCAAGAACTC
1 AAAGGAAGAAGAAAAAGGTATCTAGAAAGAACTC
*
81283709 AAAGGAAGAAGAAAAAGGTATCTGGAAAGAACTC
1 AAAGGAAGAAGAAAAAGGTATCTAGAAAGAACTC
*
81283743 AAAAGAA-AAGA
1 AAAGGAAGAAGA
81283754 GAATACAACT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 4 0.10
34 35 0.90
ACGTcount: A:0.54, C:0.09, G:0.25, T:0.11
Consensus pattern (34 bp):
AAAGGAAGAAGAAAAAGGTATCTAGAAAGAACTC
Found at i:81286471 original size:26 final size:26
Alignment explanation
Indices: 81286441--81286498 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
81286431 ATAATAACCA
*
81286441 TTCAA-AAGAAACTTGTCATTCATAAC
1 TTCAATAA-AAACTTGTCATTCACAAC
*
81286467 TTCAATCAAAACTTGTCATTCACAAC
1 TTCAATAAAAACTTGTCATTCACAAC
81286493 TTCAAT
1 TTCAAT
81286499 CGATAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (26 bp):
TTCAATAAAAACTTGTCATTCACAAC
Found at i:81286499 original size:26 final size:26
Alignment explanation
Indices: 81286449--81286499 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
81286439 CATTCAAAAG
*
81286449 AAACTTGTCATTCATAACTTCAATCA
1 AAACTTGTCATTCACAACTTCAATCA
81286475 AAACTTGTCATTCACAACTTCAATC
1 AAACTTGTCATTCACAACTTCAATC
81286500 GATAATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (26 bp):
AAACTTGTCATTCACAACTTCAATCA
Found at i:81286691 original size:21 final size:21
Alignment explanation
Indices: 81286661--81286722 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
81286651 AAAATGCCAG
*
81286661 CAGAAGCTCGTAAGAGCTGAA
1 CAGAAGCTCGTAAGAGCTAAA
*
81286682 CA-ACAGCTCGTAAGAACTAAA
1 CAGA-AGCTCGTAAGAGCTAAA
81286703 CAGAAGCTCGTAAGAGCTAA
1 CAGAAGCTCGTAAGAGCTAA
81286723 TCCACCCGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (21 bp):
CAGAAGCTCGTAAGAGCTAAA
Found at i:81290776 original size:28 final size:28
Alignment explanation
Indices: 81290711--81290809 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
81290701 CATGAGATTG
* * *
81290711 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
81290740 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
81290768 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
81290796 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81290810 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:81298790 original size:28 final size:28
Alignment explanation
Indices: 81298725--81298823 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
81298715 CATGAGATTG
* * *
81298725 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
81298754 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
81298782 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
81298810 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81298824 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:81303444 original size:66 final size:68
Alignment explanation
Indices: 81303368--81303554 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
81303358 TAGTACCACT
*
81303368 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
81303430 CACG
65 CACG
81303434 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
81303499 ATCACG
63 ATCACG
81303505 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
81303555 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:81303479 original size:71 final size:71
Alignment explanation
Indices: 81303391--81303554 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81303381 CGATTTGTCT
81303391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81303456 CTTTCA
66 CTTTCA
81303462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81303527 CTTTCA
66 CTTTCA
81303533 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81303555 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:81303592 original size:71 final size:70
Alignment explanation
Indices: 81303391--81303588 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
81303381 CGATTTGTCT
* * *
81303391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81303456 CTTTCA
65 CTTTCA
* * *
81303462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81303527 CTTTCA
65 CTTTCA
* *
81303533 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
81303589 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:81307010 original size:66 final size:68
Alignment explanation
Indices: 81306934--81307120 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
81306924 TAGTACCACT
*
81306934 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
81306996 CACG
65 CACG
81307000 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
81307065 ATCACG
63 ATCACG
81307071 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
81307121 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:81307045 original size:71 final size:71
Alignment explanation
Indices: 81306957--81307120 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81306947 CGATTTGTCT
81306957 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81307022 CTTTCA
66 CTTTCA
81307028 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81307093 CTTTCA
66 CTTTCA
81307099 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81307121 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:81307158 original size:71 final size:70
Alignment explanation
Indices: 81306957--81307154 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
81306947 CGATTTGTCT
* * *
81306957 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81307022 CTTTCA
65 CTTTCA
* * *
81307028 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
81307093 CTTTCA
65 CTTTCA
* *
81307099 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
81307155 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:81321334 original size:40 final size:40
Alignment explanation
Indices: 81321279--81321488 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81321269 AACATTGGAA
81321279 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81321319 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81321359 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81321399 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81321438 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81321479 CTATATCCGG
1 ATATATCCGG
81321489 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81329467 original size:40 final size:40
Alignment explanation
Indices: 81329412--81329621 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
81329402 GAACATTGAA
81329412 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81329452 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
81329492 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
81329532 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
81329571 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
81329612 CTATATCCGG
1 ATATATCCGG
81329622 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:81332019 original size:28 final size:28
Alignment explanation
Indices: 81331954--81332052 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
81331944 CATGAGATTG
* * *
81331954 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
81331983 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
81332011 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
81332039 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81332053 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:81335828 original size:38 final size:38
Alignment explanation
Indices: 81335774--81335914 Score: 165
Period size: 38 Copynumber: 3.7 Consensus size: 38
81335764 GTCTTAAAGA
* *
81335774 CCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
81335812 CCCGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * ** *
81335850 CCCGCAGGCCTAGTGCTGGTATTATATCTTTGTTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATC-CGGGTTAAA-T
** *
81335890 CCCATAGGCTTCGTGCTGGTGTTAT
1 CCCGCAGGCTTCGTGCTGGTATTAT
81335915 GTTTGGGTTT
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 60 0.69
39 6 0.07
40 21 0.24
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:81339994 original size:40 final size:40
Alignment explanation
Indices: 81339922--81340157 Score: 240
Period size: 40 Copynumber: 5.9 Consensus size: 40
81339912 CGCGATTAGA
* * * *
81339922 GGTACCGAAATATAAATAGGGGCACGTATGTGCATGC-AG
1 GGTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
* *
81339961 GAGTACTGAAGTACATACAGGGGCACGTATGTGCATTCAAG
1 G-GTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
** * * * * * * *
81340002 GGTATTGAAGTACAAAGAAGGGAATGTATGTGCGTTTAGG
1 GGTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
* * *
81340042 GGTACCGAAGTACAAGCAGGGGCGCGTATGTGCATTCGAG
1 GGTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
* *
81340082 GGAACCGAAATACAAACAGGGGCACGTATGTGCATTCAAG
1 GGTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
* * * *
81340122 GGTACCAAACTACAAACAGGGGTATGTATGTGCATT
1 GGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
81340158 TAGGGGATAT
Statistics
Matches: 158, Mismatches: 37, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 154 0.97
41 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (40 bp):
GGTACCGAAGTACAAACAGGGGCACGTATGTGCATTCAAG
Found at i:81340136 original size:120 final size:120
Alignment explanation
Indices: 81339939--81340163 Score: 308
Period size: 120 Copynumber: 1.9 Consensus size: 120
81339929 AAATATAAAT
* * * *
81339939 AGGGGCACGTATGTGCATGCAGGAGTACTGAAGTACATACAGGGGCACGTATGTGCATTCAAGGG
1 AGGGGCACGTATGTGCATGCAGGAGAACCGAAATACAAACAGGGGCACGTATGTGCATTCAAGGG
*** * * *
81340004 TATTGAAGTACAAAGAAGGGAATGTATGTGCGTTTAGGGGTACCGAAGTACAAGC
66 TACCAAACTACAAACAAGGGAATGTATGTGCATTTAGGGGTACCGAAGTACAAGC
* *
81340059 AGGGGCGCGTATGTGCATTCGAGG-GAACCGAAATACAAACAGGGGCACGTATGTGCATTCAAGG
1 AGGGGCACGTATGTGCATGC-AGGAGAACCGAAATACAAACAGGGGCACGTATGTGCATTCAAGG
* *
81340123 GTACCAAACTACAAACAGGGGTATGTATGTGCATTTAGGGG
65 GTACCAAACTACAAACAAGGGAATGTATGTGCATTTAGGGG
81340164 ATATTTTCTT
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 87 0.97
121 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.33, T:0.21
Consensus pattern (120 bp):
AGGGGCACGTATGTGCATGCAGGAGAACCGAAATACAAACAGGGGCACGTATGTGCATTCAAGGG
TACCAAACTACAAACAAGGGAATGTATGTGCATTTAGGGGTACCGAAGTACAAGC
Found at i:81346911 original size:40 final size:41
Alignment explanation
Indices: 81346858--81346940 Score: 98
Period size: 40 Copynumber: 2.0 Consensus size: 41
81346848 CTCAAAGTTT
*
81346858 GATTTTATACACCAGCA-ATAAGCCTGCTAGGCAT-AAGCCC
1 GATTTAATACACCAGCACA-AAGCCTGCTAGGCATAAAGCCC
* * * *
81346898 GATTTAATTCACCAGCACAAGGCTTGCTAGGCTTAAAGCCC
1 GATTTAATACACCAGCACAAAGCCTGCTAGGCATAAAGCCC
81346939 GA
1 GA
81346941 ATATCACTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
40 27 0.75
41 9 0.25
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (41 bp):
GATTTAATACACCAGCACAAAGCCTGCTAGGCATAAAGCCC
Found at i:81349996 original size:20 final size:21
Alignment explanation
Indices: 81349958--81349996 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
81349948 AAATAACCCA
*
81349958 TACATATCATTATACAGAAGC
1 TACATATCATTAAACAGAAGC
*
81349979 TACA-ATCATTAAATAGAA
1 TACATATCATTAAACAGAA
81349997 ATAATAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (21 bp):
TACATATCATTAAACAGAAGC
Found at i:81352615 original size:27 final size:27
Alignment explanation
Indices: 81352583--81352636 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
81352573 AGGGGATATC
81352583 GGTAATTTTGCTCTTTAGGGGTAATTT
1 GGTAATTTTGCTCTTTAGGGGTAATTT
81352610 GGTAATTTTGCTCTTTAGGGGTAATTT
1 GGTAATTTTGCTCTTTAGGGGTAATTT
81352637 CGTGATCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.48
Consensus pattern (27 bp):
GGTAATTTTGCTCTTTAGGGGTAATTT
Found at i:81354491 original size:19 final size:18
Alignment explanation
Indices: 81354454--81354497 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81354444 ATACATACAG
81354454 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
81354471 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
81354490 TACTAATT
1 TAATAATT
81354498 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:81356921 original size:28 final size:28
Alignment explanation
Indices: 81356875--81356943 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81356865 TTTAAAACCC
*
81356875 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81356902 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81356930 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
81356944 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:81362731 original size:46 final size:44
Alignment explanation
Indices: 81362663--81362839 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
81362653 ATATTTGGGC
* * *
81362663 ATCCGAAATCATTGAGTTGAGTCCGAGTTCAGTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
81362707 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
81362756 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
81362800 ACCCCCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81362840 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 66 0.60
47 33 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:81362819 original size:93 final size:93
Alignment explanation
Indices: 81362660--81362831 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
81362650 AGGATATTTG
* ***
81362660 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCGAACTCGTTGAG
81362725 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** * *
81362753 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCGACCTCGTTGAG
1 GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCGAACTCGTTGAG
81362818 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
81362832 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAAATCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Done.