Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 273 of 345
Found at i:81366010 original size:29 final size:29
Alignment explanation
Indices: 81365951--81366054 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
81365941 GTGACGAGAT
* **
81365951 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
81365980 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
* * * *
81366009 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
81366038 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
81366055 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.95
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:81373703 original size:29 final size:29
Alignment explanation
Indices: 81373670--81373742 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
81373660 GTGACGAGAT
81373670 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81373699 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81373728 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81373743 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81373758 original size:29 final size:30
Alignment explanation
Indices: 81373670--81373802 Score: 141
Period size: 29 Copynumber: 4.6 Consensus size: 30
81373660 GTGACGAGAT
81373670 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
81373699 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* ***
81373728 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* * * **
81373757 TGGCACTATGTGTGCG-GGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAT-ATA
81373786 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
81373803 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.02
29 87 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:81379162 original size:15 final size:15
Alignment explanation
Indices: 81379142--81379210 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
81379132 GTATCTTGGG
81379142 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
81379157 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
81379172 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
81379187 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
81379202 TTTCTTTAT
1 TTTCTTTAT
81379211 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:81379211 original size:30 final size:30
Alignment explanation
Indices: 81379133--81379220 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
81379123 CATAGTATCG
* * * *
81379133 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
81379163 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
81379193 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
81379221 TGTTATATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:81381673 original size:46 final size:46
Alignment explanation
Indices: 81381620--81381825 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 46
81381610 TCCGAAATCA
* ***
81381620 TTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTACGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACACGAACTCG
* * * * * *
81381666 TTGAGTTGAGTCCGAGTT--C-GA-GAGATG-TAAC-TAGGCACTTG
1 TTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAACACACGAACTCG
* *
81381707 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGC-CTG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACACGAACTC-G
* * * *
81381753 TTGAGTTGAGTCCGTGTTCACTTATGGATGCGAACACCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACACGAACTCG
81381799 TTGAGTTGAGTCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
81381826 GCGGGTTACA
Statistics
Matches: 133, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
41 25 0.19
42 3 0.02
43 6 0.05
44 6 0.05
45 4 0.03
46 89 0.67
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACACGAACTCG
Found at i:81383053 original size:116 final size:116
Alignment explanation
Indices: 81382849--81383078 Score: 442
Period size: 116 Copynumber: 2.0 Consensus size: 116
81382839 ACCCTGAAAC
*
81382849 AGGGGAGATTTTAACTAATAAATTGTACTAATTGGCTTGACCAAAAATTCTAGAAAACAATTAGT
1 AGGGGAGATTTTAACTAATAAACTGTACTAATTGGCTTGACCAAAAATTCTAGAAAACAATTAGT
*
81382914 AAATATATATATGAGTCTAGTTTCAGGAAAAATTTACGGAATTGGGTTTCG
66 AAATATATATATGAGTCTAGTTTCAGGAAAAATTTACAGAATTGGGTTTCG
81382965 AGGGGAGATTTTAACTAATAAACTGTACTAATTGGCTTGACCAAAAATTCTAGAAAACAATTAGT
1 AGGGGAGATTTTAACTAATAAACTGTACTAATTGGCTTGACCAAAAATTCTAGAAAACAATTAGT
81383030 AAATATATATATGAGTCTAGTTTCAGGAAAAATTTACAGAATTGGGTTT
66 AAATATATATATGAGTCTAGTTTCAGGAAAAATTTACAGAATTGGGTTT
81383079 TGAGTTTTGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 112 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.33
Consensus pattern (116 bp):
AGGGGAGATTTTAACTAATAAACTGTACTAATTGGCTTGACCAAAAATTCTAGAAAACAATTAGT
AAATATATATATGAGTCTAGTTTCAGGAAAAATTTACAGAATTGGGTTTCG
Found at i:81384491 original size:21 final size:21
Alignment explanation
Indices: 81384466--81384515 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
81384456 ATCAAATAGG
81384466 CACTTTTAACAAATGCCTAGC
1 CACTTTTAACAAATGCCTAGC
*
81384487 CACTTTTAACAAATGGCTAGC
1 CACTTTTAACAAATGCCTAGC
81384508 CACTTTTA
1 CACTTTTA
81384516 CATTTTACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (21 bp):
CACTTTTAACAAATGCCTAGC
Found at i:81385047 original size:8 final size:8
Alignment explanation
Indices: 81385034--81385067 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
81385024 AAGTAAATAA
81385034 ATTATATT
1 ATTATATT
81385042 ATTATATT
1 ATTATATT
81385050 ATTATATT
1 ATTATATT
*
81385058 ATAATATT
1 ATTATATT
81385066 AT
1 AT
81385068 ATAAAACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
ATTATATT
Found at i:81390573 original size:96 final size:96
Alignment explanation
Indices: 81390380--81390663 Score: 299
Period size: 96 Copynumber: 2.9 Consensus size: 96
81390370 AAGAGGGTAA
* * ** * * *
81390380 AATGCTGATGCCATGTCCCGGACATGGTCTTACCCCGGCTCTCATATATCG-GTGTTGATGCCAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTAAACTGGATCTCATA-AT-GAG-GCTGATGCCAT
81390444 GTCCCAGACATGGTCTTACACT-GACACATATAAC
63 GTCCCAGACATGGTCTTACACTAG-CACATATAAC
* * *
81390478 AATGCCGATGCCATGTTCC-GAACATGGTCTTACACTGGAT-TGCATATTGAGGCTGATGCCATG
1 AATGCCGATGCCATGTCCCAG-ACATGGTCTTAAACTGGATCT-CATAATGAGGCTGATGCCATG
*
81390541 TCCCAGACATGGTCTTACACTAGCTC-TCATAAC
64 TCCCAGACATGGTCTTACACTAGCACAT-ATAAC
* * * ** * *
81390574 AATGTCGATGCCATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTGGCCAATGTCATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTAAACTGGATCTCATAATGAGGCTGATGCCATGTC
*
81390639 CCTGACATGGTCTTACACTAGCACA
66 CCAGACATGGTCTTACACTAGCACA
81390664 CATATCAACC
Statistics
Matches: 158, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
95 1 0.01
96 113 0.72
97 7 0.04
98 37 0.23
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTAAACTGGATCTCATAATGAGGCTGATGCCATGTC
CCAGACATGGTCTTACACTAGCACATATAAC
Found at i:81390615 original size:48 final size:48
Alignment explanation
Indices: 81390386--81390620 Score: 235
Period size: 48 Copynumber: 4.9 Consensus size: 48
81390376 GTAAAATGCT
* * * ** *
81390386 GATGCCATGTCCCGGACATGGTCTTACCCCGGCTCTCATATATCGGTGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-A-CAATGTC
* * *
81390436 GATGCCATGTCCCAGACATGGTCTTACACTGACACAT-ATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAACAATGTC
* * *** *
81390484 GATGCCATGTTCC-GAACATGGTCTTACACTGGAT-TGCATATTGA-GGC
1 GATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCT-CATAACAATGTC
*
81390531 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGTC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGTC
*
81390580 GATGCCATGTCCCAGACATGGTCTTAAACTGGCTCTCATAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA
81390621 TGTGGCCAAT
Statistics
Matches: 151, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 108 0.72
49 5 0.03
50 33 0.22
51 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGTC
Found at i:81390654 original size:144 final size:146
Alignment explanation
Indices: 81390383--81390657 Score: 344
Period size: 144 Copynumber: 1.9 Consensus size: 146
81390373 AGGGTAAAAT
* * * ** *
81390383 GCTGATGCCATGTCCCGGACATGGTCTTACCCCGGCTCTCATATATCGGTGTTGATGCCATGTCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATATATCAATGTCGATGCCATGTCC
* * * *
81390448 CAGACATGGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCGAACATGGTCTTACAC
66 CAGACATGGTCTTAAACTGACACATATAACAATGCCAATGCCATATCCCGAACATGGTCTTACAC
81390513 TGGATTGCATATTGAG
131 TGGATTGCATATTGAG
*
81390529 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-A-CAATGTCGATGCCATGTCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATATATCAATGTCGATGCCATGTCC
* * ** *
81390592 CAGACATGGTCTTAAACTGGCTC-TCATAA-TGTGGCCAATGTCATATCCCTG-ACATGGTCTTA
66 CAGACATGGTCTTAAACTGACACAT-ATAACAAT-GCCAATGCCATATCCC-GAACATGGTCTTA
81390654 CACT
128 CACT
81390658 AGCACACATA
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
143 2 0.02
144 67 0.61
145 2 0.02
146 39 0.35
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (146 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATATATCAATGTCGATGCCATGTCC
CAGACATGGTCTTAAACTGACACATATAACAATGCCAATGCCATATCCCGAACATGGTCTTACAC
TGGATTGCATATTGAG
Found at i:81393926 original size:17 final size:19
Alignment explanation
Indices: 81393892--81393926 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
81393882 TTTTTATTAT
81393892 AATTAACCTTTATTAACCG
1 AATTAACCTTTATTAACCG
81393911 AATT-ACCTTT-TTAACC
1 AATTAACCTTTATTAACC
81393927 TTAAGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (19 bp):
AATTAACCTTTATTAACCG
Found at i:81395420 original size:20 final size:20
Alignment explanation
Indices: 81395395--81395434 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81395385 AAGGCATTTG
*
81395395 ATGTTTGGCTTTGACTTGTT
1 ATGTTTGACTTTGACTTGTT
81395415 ATGTTTGACTTTGACTTGTT
1 ATGTTTGACTTTGACTTGTT
81395435 GACAAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.10, G:0.23, T:0.55
Consensus pattern (20 bp):
ATGTTTGACTTTGACTTGTT
Found at i:81400169 original size:40 final size:39
Alignment explanation
Indices: 81400114--81400330 Score: 220
Period size: 40 Copynumber: 5.5 Consensus size: 39
81400104 GGATGATAAC
** * *
81400114 CGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTT
* *
81400154 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTTCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TT
*
81400194 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
81400233 CTGGGCTAAGTCCTGAAGGCATTGGTGCGAGTTACTATAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * * *
81400273 CAGGGCTATGTCCCGAACGCATTCGAGCGAG-TAGCTATAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
* * *
81400313 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
81400331 TACTTGGCTT
Statistics
Matches: 152, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 16 0.11
40 136 0.89
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:81400251 original size:80 final size:79
Alignment explanation
Indices: 81400113--81400330 Score: 260
Period size: 80 Copynumber: 2.7 Consensus size: 79
81400103 TGGATGATAA
* * * *
81400113 CCGGGCTAAGTCCCGAAGGCATTTGCA-CTAGTGACTAGTTTCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAGTTACTA-TATCGGGCTAAGTCCCGAAGGCATTG
*
81400177 GTGCGAGTTTCTATAT
64 GTGCGAGTTACTATAT
* *
81400193 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCCTGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATC-GGGCTAAGTCCCGAAGGCATTGG
81400258 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
* * * * * * *
81400273 CAGGGCTATGTCCCGAACGCATTCGAGCGAG-TAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCGGGCTAAGTCCCGAAGG
81400331 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 18 0.15
80 101 0.85
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:81406591 original size:40 final size:40
Alignment explanation
Indices: 81406507--81406656 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 40
81406497 GATATAGCGT
* * * * * ** *
81406507 CTCGCTCAAAAGCCTTCGGGACATAGCCTGGTTATAATAG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
* *
81406547 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
* *
81406587 CTCGCACAAATGCCTTC-GGACCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGTAA
* *
81406627 CTTAGCATAAA-GCCTTCGGGACTTAGCCCG
1 C-TCGCACAAATGCCTTCGGGACTTAGCCCG
81406657 AACATCATTC
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 77 0.86
41 10 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTAA
Found at i:81416555 original size:29 final size:28
Alignment explanation
Indices: 81416521--81416623 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81416511 TACTCAATCA
*
81416521 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
81416550 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
81416579 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
81416608 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81416624 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:81424570 original size:29 final size:28
Alignment explanation
Indices: 81424536--81424638 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81424526 TACTCAATCA
*
81424536 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
81424565 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
81424594 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
81424623 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81424639 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:81426765 original size:25 final size:26
Alignment explanation
Indices: 81426717--81426770 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
81426707 ATAAAAACTA
*
81426717 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAATGAAAAAGTATTAAAGGAAGAT
81426743 AAAAT-AAAAAGTACTTAAA-GAAGAT
1 AAAATGAAAAAGTA-TTAAAGGAAGAT
81426768 AAA
1 AAA
81426771 CAAAGATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.63, C:0.02, G:0.15, T:0.20
Consensus pattern (26 bp):
AAAATGAAAAAGTATTAAAGGAAGAT
Found at i:81440345 original size:50 final size:50
Alignment explanation
Indices: 81440151--81440342 Score: 289
Period size: 50 Copynumber: 3.8 Consensus size: 50
81440141 CCATCAAAGT
*
81440151 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGC
* * * *
81440201 CGATGCCATATCCCAGACATGGTCTTACAATGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG-GC
*
81440251 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
*
81440301 CGATGCCATGTCCCAGACATGTTCTTACACTAGCTCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
81440343 CTCCCTAGCA
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
49 1 0.01
50 126 0.98
51 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:81448759 original size:13 final size:13
Alignment explanation
Indices: 81448741--81448765 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81448731 AACAACGCTA
81448741 GACACGACCGTGC
1 GACACGACCGTGC
81448754 GACACGACCGTG
1 GACACGACCGTG
81448766 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.32, T:0.08
Consensus pattern (13 bp):
GACACGACCGTGC
Found at i:81466983 original size:18 final size:19
Alignment explanation
Indices: 81466952--81466999 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
81466942 AAAATAATCT
81466952 AAATAA-AAAA-ATGAAT-
1 AAATAAGAAAAGATGAATA
* *
81466968 TAATAGGAAAAGATGAATA
1 AAATAAGAAAAGATGAATA
81466987 AAATAAGAAAAGA
1 AAATAAGAAAAGA
81467000 GAGAGAGAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 4 0.16
17 4 0.16
18 6 0.24
19 11 0.44
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.17
Consensus pattern (19 bp):
AAATAAGAAAAGATGAATA
Found at i:81468042 original size:24 final size:24
Alignment explanation
Indices: 81468015--81468179 Score: 165
Period size: 24 Copynumber: 6.9 Consensus size: 24
81468005 GAAATGACTT
81468015 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
81468039 TGGCATTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
81468063 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
81468087 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
81468111 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
* ** *
81468136 -GGCACTATGTGTGTG-GGTTAACA
1 TGGCACTATGTGTGCGAATTTGA-A
*
81468159 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGAATTT
81468180 CCTTGCTTGA
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 2 0.02
24 107 0.92
25 4 0.03
26 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:81468140 original size:72 final size:72
Alignment explanation
Indices: 81468015--81468179 Score: 206
Period size: 72 Copynumber: 2.3 Consensus size: 72
81468005 GAAATGACTT
* * ** *
81468015 TGGCACTATGTGTGCGAATTTGAATGGCATTATGTGTGCGAATTTGTATGGCACTATGTGTGCGG
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
* *
81468080 ATTTGA-A
66 -GTTAACA
* * * *
81468087 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAAGGCACTATGTGTGTGG
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
81468152 GTTAACA
66 GTTAACA
*
81468159 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGAATTT
81468180 CCTTGCTTGA
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
71 3 0.04
72 76 0.96
ACGTcount: A:0.24, C:0.12, G:0.30, T:0.35
Consensus pattern (72 bp):
TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTAAGGCACTATGTGTGCGG
GTTAACA
Found at i:81474004 original size:41 final size:41
Alignment explanation
Indices: 81473959--81474076 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81473949 TGAAAGATAA
81473959 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81474000 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81474030 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81474071 ATGTAG
1 ATGTAG
81474077 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81474015 original size:71 final size:71
Alignment explanation
Indices: 81473927--81474090 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81473917 GAGATGTATC
81473927 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81473992 AGGACA
66 AGGACA
81473998 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81474063 AGGACA
66 AGGACA
81474069 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81474091 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81481574 original size:41 final size:41
Alignment explanation
Indices: 81481529--81481646 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81481519 TGAAAGATAA
81481529 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81481570 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81481600 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81481641 ATGTAG
1 ATGTAG
81481647 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81481585 original size:71 final size:71
Alignment explanation
Indices: 81481497--81481660 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81481487 GAGATGTATC
81481497 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81481562 AGGACA
66 AGGACA
81481568 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81481633 AGGACA
66 AGGACA
81481639 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81481661 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81485576 original size:28 final size:28
Alignment explanation
Indices: 81485543--81485606 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
81485533 ACCGGTGACC
81485543 ACACGGGCGTGTCTAGGCCGTGTGAAGG
1 ACACGGGCGTGTCTAGGCCGTGTGAAGG
81485571 ACACGGGCGTGTCTAGGCCGTGTGAAGG
1 ACACGGGCGTGTCTAGGCCGTGTGAAGG
81485599 ACACGGGC
1 ACACGGGC
81485607 CAGGGACACG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.16
Consensus pattern (28 bp):
ACACGGGCGTGTCTAGGCCGTGTGAAGG
Found at i:81490232 original size:49 final size:49
Alignment explanation
Indices: 81490126--81490397 Score: 154
Period size: 46 Copynumber: 5.7 Consensus size: 49
81490116 AGGGTACGAT
* * * * * * *
81490126 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC-T-CACATATCTAA
1 GCCGATGCCAAGTCCCAGACA-GGTCTTACACTAGCTTGCATATATCGAG
* * *
81490174 GTCGATGCCAAGTCCCAGACAGGTCTTACTCT-GACTTTCATATATCGAG
1 GCCGATGCCAAGTCCCAGACAGGTCTTACACTAG-CTTGCATATATCGAG
* *
81490223 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAG
1 GCCGATGCCAAGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAG
* * * ** ** * * *
81490272 GCCAATG-CATGTCCTAGACATATCTTACACCGGCTCT-CA-A-CTCAAT
1 GCCGATGCCAAGTCCCAGACAGGTCTTACACTAGCT-TGCATATATCGAG
* * * *
81490318 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTG
1 GCCGATGCCAAGTCCCAGACAGGTCTTACACTAGCT-TGCATATATCGAG
* * * *
81490364 CCCAATG-CATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCCAAGTCCCAGACAGGTCTTACACTAGC
81490398 ACACATATCA
Statistics
Matches: 186, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
46 71 0.38
47 14 0.08
48 43 0.23
49 57 0.31
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
GCCGATGCCAAGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAG
Found at i:81490337 original size:46 final size:46
Alignment explanation
Indices: 81490231--81490394 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
81490221 AGGCCGATGC
* * * *
81490231 CATGTCCCAGACAGGTCTTACACTAGCT-TGCATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CA-A-CTCAATGCCAATG
* * * *
81490279 CATGTCCTAGACATATCTTACACCGGCTCTCAACTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAACTCAATGCCAATG
81490325 CATGTCCCAGACATGTCTTACACTGGCTCTC-A-T-AATGTGCCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAACTCAA--TG-CCAATG
81490371 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
81490395 AGCACACATA
Statistics
Matches: 100, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 3 0.03
46 67 0.67
47 1 0.01
48 25 0.25
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCAACTCAATGCCAATG
Found at i:81490390 original size:92 final size:95
Alignment explanation
Indices: 81490223--81490393 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 95
81490213 ATATATCGAG
* * *
81490223 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCCAATGCATGTCCTA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGCCCAATGCATGTCCCA
81490288 GACATATCTTACACCGGCTCTCAACTCAAT
66 GACATATCTTACACCGGCTCTCAACTCAAT
* * *
81490318 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT-GTGCCCAATGCATGTCCC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATATATCGAGCCCAATGCATGTCCC
*
81490379 AGACATGTCTTACAC
65 AGACATATCTTACAC
81490394 TAGCACACAT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
92 29 0.43
93 1 0.01
94 30 0.44
95 8 0.12
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGCCCAATGCATGTCCCA
GACATATCTTACACCGGCTCTCAACTCAAT
Found at i:81492946 original size:15 final size:15
Alignment explanation
Indices: 81492913--81492982 Score: 59
Period size: 15 Copynumber: 4.7 Consensus size: 15
81492903 AAAGATGGTA
* * *
81492913 AGAAAACCAAGATAA
1 AGAAATCCAAAATAG
*
81492928 AGAAATCCAAAATGG
1 AGAAATCCAAAATAG
* * *
81492943 AGAAACCCAGAATAA
1 AGAAATCCAAAATAG
* *
81492958 AGAGATCAAAAATAG
1 AGAAATCCAAAATAG
81492973 AGAAATCCAA
1 AGAAATCCAA
81492983 GATACGATAC
Statistics
Matches: 40, Mismatches: 15, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AGAAATCCAAAATAG
Found at i:81492958 original size:30 final size:29
Alignment explanation
Indices: 81492916--81492986 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
81492906 GATGGTAAGA
* *
81492916 AAACCAAGATAAAGAAATCCAAAATGGAG
1 AAACCAAGATAAAGAAATCAAAAATAGAG
* *
81492945 AAACCCAGAATAAAGAGATCAAAAATAGAG
1 AAACCAAG-ATAAAGAAATCAAAAATAGAG
81492975 AAATCCAAGATA
1 AAA-CCAAGATA
81492987 CGATACCGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 7 0.20
30 24 0.69
31 4 0.11
ACGTcount: A:0.59, C:0.14, G:0.15, T:0.11
Consensus pattern (29 bp):
AAACCAAGATAAAGAAATCAAAAATAGAG
Found at i:81496920 original size:49 final size:49
Alignment explanation
Indices: 81496863--81497127 Score: 230
Period size: 49 Copynumber: 5.6 Consensus size: 49
81496853 TATCTTAGTT
* *
81496863 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCC
* * * * *
81496912 GATGCCATGTCCTAGATAGGTCTTACACT-AGCTCTCATCTATCGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGAGGCC
* * * * * *
81496961 GATGGCATGTCCCAGATAGGTCTTAGACTGA----CACATGTC-AAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCC
*
81497005 GATGCCATGTCCCAGACAGGTCTTACACT-AGC-CTGCATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATCGAGGCC
* * * * *
81497054 AATG-CATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGACC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCC
* *
81497100 GATG-CATGTCCTAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
81497128 AGCATACATA
Statistics
Matches: 177, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 29 0.16
45 5 0.03
46 30 0.17
47 1 0.01
48 35 0.20
49 75 0.42
50 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCC
Found at i:81499540 original size:42 final size:42
Alignment explanation
Indices: 81499478--81499606 Score: 143
Period size: 44 Copynumber: 3.0 Consensus size: 42
81499468 GCCAATGTCA
* * * * *
81499478 CATAT-CGATGCCATTATCCCAGATAGGGTCTTACACGAACT
1 CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
*
81499519 CATATACGATGCCAATGTCCCAGACATAGTCTTACACGTAAAT
1 CATATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAAT
* * * *
81499562 CACAAATCGATGCCAACGTCCTAGACATGGTCTTACACGAAAT
1 CATATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
81499605 CA
1 CA
81499607 CATATCGAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
41 5 0.07
42 27 0.36
43 13 0.18
44 29 0.39
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
Found at i:81505589 original size:40 final size:39
Alignment explanation
Indices: 81505544--81505751 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
81505534 CGGAATACAA
*
81505544 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
81505584 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
81505624 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81505664 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
81505704 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
81505744 CCGGATAT
1 CCGGATAT
81505752 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:81505684 original size:80 final size:81
Alignment explanation
Indices: 81505544--81505749 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
81505534 CGGAATACAA
* * *
81505544 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
81505608 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
81505624 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
81505687 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
81505704 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
81505750 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:81508968 original size:6 final size:6
Alignment explanation
Indices: 81508938--81509025 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
81508928 AAGAAACATT
* * * *
81508938 ATCAGA A-CTAGA ATCAGG ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
81508987 ATCAGA ATCAGT ATCAGTTA AT-AGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA ATCAGA AT
81509026 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 5 0.08
6 51 0.78
7 6 0.09
8 3 0.05
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:81508993 original size:25 final size:24
Alignment explanation
Indices: 81508938--81509025 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 24
81508928 AAGAAACATT
81508938 ATCAGAA-CTAGAATCAGGATG-AGA
1 ATCAGAATC-AGAATCAGG-TGAAGA
*
81508962 ATTAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGGTGA-AGA
* * *
81508987 ATCAGAATCAGTATCAGTTAATAGA
1 ATCAGAATCAGAATCAGGTGA-AGA
81509012 ATCAGAATCAGAAT
1 ATCAGAATCAGAAT
81509026 GTGAATGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
23 2 0.04
24 15 0.28
25 37 0.69
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGGTGAAGA
Found at i:81509175 original size:22 final size:22
Alignment explanation
Indices: 81509139--81509203 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
81509129 GCAAATACGT
81509139 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* *
81509161 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
81509183 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
81509204 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:81509663 original size:27 final size:27
Alignment explanation
Indices: 81509633--81510096 Score: 604
Period size: 27 Copynumber: 17.2 Consensus size: 27
81509623 GGAAAAACGA
* * *
81509633 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
81509660 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
81509687 TATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * * *
81509714 TAATTCTATCCTACAGGGGCATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
81509741 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
81509768 TATTTCTACCCTACAAGGTTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * * * **
81509795 TATTTCAATCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGG
*
81509822 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
81509849 TATTTCCACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* *
81509876 TATTTCTACCCTACAAGGCTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
81509903 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
81509930 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
81509957 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
**
81509984 TAATTCTACATTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
81510011 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
**
81510038 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGG
81510065 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
81510092 TAATT
1 TAATT
81510097 TTATAAATCG
Statistics
Matches: 388, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 388 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:81510112 original size:27 final size:27
Alignment explanation
Indices: 81510080--81510391 Score: 287
Period size: 27 Copynumber: 11.7 Consensus size: 27
81510070 CTACCCTACA
* *
81510080 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81510107 AAGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
***
81510133 ACACTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** * *
81510160 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * * *
81510187 GGGGTACTTT-GGTAGTTTTACAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
81510214 AGGGTATTTTAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81510241 AGGGTCTTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
81510268 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
81510295 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
81510321 ACGGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
81510348 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
81510374 GGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
81510392 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 42, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
25 3 0.01
26 64 0.27
27 158 0.68
28 8 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:81510222 original size:54 final size:53
Alignment explanation
Indices: 81510091--81510391 Score: 270
Period size: 53 Copynumber: 5.6 Consensus size: 53
81510081 GGGTATTTCG
* * * ***
81510091 GTAATTTTATAAATCGAAGGTATTTCAGTAATTTTAC-AATCAACACTA-TTTCA
1 GTAATTTTA-CAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTACTTT-A
* ** * * * *
81510144 GTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTTG
1 GTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTACTTTA
* * *
81510198 GTAGTTTTACAAGTCAAGGGTATTTTAGTAATTTTACAAATCGAGGGT-CTTTCA
1 GTAATTTTACAA-TCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTACTTT-A
* * *
81510252 GTAATTTTGCAAACTGAGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTTA
1 GTAATTTTACAATC-GAGGGTATTTCAG-TAATTTTACAAATCGAGGGTACTTTA
* * * *
81510306 GTAATTTTACAATCGACGGTATTTCAGTAATTTTATAAATCGGGGGTACTTTG
1 GTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTACTTTA
* *
81510359 GTAATTTTACAA-CTGGGGGTATTTTAGTAATTT
1 GTAATTTTACAATC-GAGGGTATTTCAGTAATTT
81510392 GGTAAACTAA
Statistics
Matches: 200, Mismatches: 38, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
52 1 0.00
53 98 0.49
54 95 0.47
55 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTACTTTA
Found at i:81511323 original size:6 final size:6
Alignment explanation
Indices: 81511312--81511401 Score: 80
Period size: 6 Copynumber: 14.8 Consensus size: 6
81511302 AACCAAAATG
*
81511312 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
81511360 AGTAA-C AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
81511402 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
5 6 0.09
6 56 0.81
7 5 0.07
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:81511339 original size:24 final size:24
Alignment explanation
Indices: 81511312--81511401 Score: 110
Period size: 24 Copynumber: 3.7 Consensus size: 24
81511302 AACCAAAATG
81511312 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
* **
81511336 AGAATCAGAATCAGAATCAATATT
1 AGAATCAGAATCAGAATCAGTAAC
* *
81511360 AGTAA-CAGAATCAGAATTAGGTGAC
1 AG-AATCAGAATCAGAATCA-GTAAC
81511385 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
81511402 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 38 0.69
25 17 0.31
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAAC
Found at i:81511364 original size:30 final size:30
Alignment explanation
Indices: 81511312--81511376 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
81511302 AACCAAAATG
81511312 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
81511342 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATCAGTAACAGAATC
81511372 AGAAT
1 AGAAT
81511377 TAGGTGACAG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:81511556 original size:27 final size:26
Alignment explanation
Indices: 81511519--81511584 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
81511509 AGCATGGCTG
*
81511519 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
81511545 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
81511572 CCAGAATCAGATA
1 CCAGAA-CAGATA
81511585 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:81511589 original size:27 final size:27
Alignment explanation
Indices: 81511519--81511592 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
81511509 AGCATGGCTG
* *
81511519 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
81511545 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
81511572 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
81511593 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:81511599 original size:27 final size:27
Alignment explanation
Indices: 81511543--81511600 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
81511533 GTGACAGAGT
* * *
81511543 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
81511570 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
81511597 CACC
1 CACC
81511601 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:81511977 original size:27 final size:26
Alignment explanation
Indices: 81511903--81511985 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
81511893 TCGATCGGTC
** *
81511903 AACAGATATTGTTACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
**
81511929 ATACAGATATTGTGGTGGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
81511956 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
81511983 AAC
1 AAC
81511986 GCTTCCTCCG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:81512237 original size:19 final size:19
Alignment explanation
Indices: 81512210--81512255 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
81512200 AAGGTATCTC
* *
81512210 GGTAATTCTACCCTACAGG
1 GGTATTTCTACCCTACAAG
81512229 GGTATTTCTACCCTACAAG
1 GGTATTTCTACCCTACAAG
81512248 GGTATTTC
1 GGTATTTC
81512256 GATAATTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (19 bp):
GGTATTTCTACCCTACAAG
Found at i:81512262 original size:46 final size:44
Alignment explanation
Indices: 81512188--81512281 Score: 136
Period size: 46 Copynumber: 2.1 Consensus size: 44
81512178 CAAAATGGTA
*
81512188 ATTT-TACCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGT
1 ATTTCTACCCACAAAGGTATCTCGATAATTCTACCCTAC-GGGGT
* *
81512232 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACGGGGT
1 ATTTCTACCC-ACAAAGGTATCTCGATAATTCTACCCTACGGGGT
81512277 ATTTC
1 ATTTC
81512282 GGTAATTCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 4 0.09
45 15 0.33
46 26 0.58
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (44 bp):
ATTTCTACCCACAAAGGTATCTCGATAATTCTACCCTACGGGGT
Found at i:81512287 original size:26 final size:26
Alignment explanation
Indices: 81512229--81512359 Score: 147
Period size: 26 Copynumber: 5.0 Consensus size: 26
81512219 ACCCTACAGG
* *
81512229 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-GGGGTATTTC
*
81512256 GATAATTCTACCCTACGGGGTATTTC
1 GGTAATTCTACCCTACGGGGTATTTC
* *** *
81512282 GGTAATTCTATCCTATAAGGTATTTT
1 GGTAATTCTACCCTACGGGGTATTTC
*
81512308 AGTAATTCTACCCTTA-GGGGTATTTC
1 GGTAATTCTACCC-TACGGGGTATTTC
81512334 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTAC-GGGGTATTT
81512360 TAGTAATTTC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
25 2 0.02
26 59 0.69
27 25 0.29
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
GGTAATTCTACCCTACGGGGTATTTC
Found at i:81512314 original size:52 final size:53
Alignment explanation
Indices: 81512229--81512367 Score: 178
Period size: 52 Copynumber: 2.6 Consensus size: 53
81512219 ACCCTACAGG
* *
81512229 GGTATTTCTACCCTACA-AGGGTA-TTTCGATAATTCTACCC-TACGGGGTATTTC
1 GGTAATTCTACCCTACAGA-GGTATTTTAG-TAATTCTACCCTTA-GGGGTATTTC
* *
81512282 GGTAATTCTATCCTATA-AGGTATTTTAGTAATTCTACCCTTAGGGGTATTTC
1 GGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACCCTTAGGGGTATTTC
*
81512334 GGTAATTCTACCCTACAGGGGTATTTTAGTAATT
1 GGTAATTCTACCCTACAGAGGTATTTTAGTAATT
81512368 TCACAATTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
52 40 0.53
53 36 0.47
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (53 bp):
GGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACCCTTAGGGGTATTTC
Found at i:81512382 original size:53 final size:52
Alignment explanation
Indices: 81512229--81512380 Score: 148
Period size: 53 Copynumber: 2.9 Consensus size: 52
81512219 ACCCTACAGG
* * **
81512229 GGTATTTCTACCCTACAAGGGTA-TTTCGATAATTCTAC-CCTACGGGGTATTTC
1 GGTAATTCTACCCTACAA-GGTATTTTAG-TAATTCTACAATTA-GGGGTATTTC
* * **
81512282 GGTAATTCTATCCTATAAGGTATTTTAGTAATTCTACCCTTAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGTATTTTAGTAATTCTACAATTAGGGGTATTTC
*
81512334 GGTAATTCTACCCTACAGGGGTATTTTAGTAATT-TCACAATTGAGGG
1 GGTAATTCTACCCTACA-AGGTATTTTAGTAATTCT-ACAATT-AGGG
81512381 TAAAACAGTA
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
52 39 0.46
53 41 0.49
54 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (52 bp):
GGTAATTCTACCCTACAAGGTATTTTAGTAATTCTACAATTAGGGGTATTTC
Found at i:81512406 original size:27 final size:27
Alignment explanation
Indices: 81512376--81512972 Score: 695
Period size: 27 Copynumber: 22.1 Consensus size: 27
81512366 TTTCACAATT
*
81512376 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512403 GAGGGTAAAACGATAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512429 TGAGGGT-AAACTAGTAATTCTATAAATC
1 -GAGGGTAAAAC-GGTAATTCTGTAAATC
* **
81512457 GAGGGTAAAACGGTAATTTTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512484 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512511 GAGGGTAAAACAGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512537 TGAGGGTAAAATGATAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
81512565 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512591 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* * ** *
81512619 GAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512646 GAGGGTAAAACGATAATTCTGTAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
** *
81512673 GAGGGTAAAATAGTAATTCTATAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512699 TGAGGGTAAAATGGTAATTCTATAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
** * ** *
81512727 GAGGGTAAAACAATAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512754 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
81512781 GAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512807 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
81512835 AAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
81512861 TGAGGGTAAAACGGTAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* **
81512889 GAGGGTAAAACGGTAATTTTAAAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512916 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
81512943 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
81512970 GAG
1 GAG
81512973 AGTACTTTGG
Statistics
Matches: 494, Mismatches: 62, Indels: 28
0.85 0.11 0.05
Matches are distributed among these distances:
26 9 0.02
27 475 0.96
28 10 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:81514962 original size:6 final size:6
Alignment explanation
Indices: 81514951--81515052 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
81514941 AACCAAAATG
*
81514951 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
81514999 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
81515048 AGAAT
1 AGAAT
81515053 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:81514966 original size:30 final size:29
Alignment explanation
Indices: 81514930--81515052 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
81514920 AAGAAACATT
* * *
81514930 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
81514960 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
81514990 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
81515020 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
81515051 AT
1 AT
81515053 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:81515207 original size:27 final size:26
Alignment explanation
Indices: 81515170--81515235 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
81515160 AGCATGGCTG
*
81515170 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
81515196 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
81515223 CCAGAATCAGATA
1 CCAGAA-CAGATA
81515236 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:81515240 original size:27 final size:27
Alignment explanation
Indices: 81515170--81515243 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
81515160 AGCATGGCTG
* *
81515170 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
81515196 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
81515223 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
81515244 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:81515250 original size:27 final size:27
Alignment explanation
Indices: 81515194--81515251 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
81515184 GTGACAGAGT
* * *
81515194 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
81515221 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
81515248 CACC
1 CACC
81515252 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:81515456 original size:22 final size:22
Alignment explanation
Indices: 81515408--81515466 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
81515398 GTAAATACGT
*
81515408 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
81515430 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
81515452 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
81515467 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:81515591 original size:27 final size:26
Alignment explanation
Indices: 81515552--81515634 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
81515542 TCGATCGGTC
* *
81515552 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
81515578 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
81515605 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
81515632 AAC
1 AAC
81515635 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:81515887 original size:27 final size:27
Alignment explanation
Indices: 81515831--81516016 Score: 250
Period size: 27 Copynumber: 7.0 Consensus size: 27
81515821 AGGGCAAAAT
* * * *
81515831 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
81515857 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81515884 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81515911 GATAATTCTACCCTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
81515937 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81515964 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
81515991 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
81516017 AGTAATTTCA
Statistics
Matches: 140, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 38 0.27
27 102 0.73
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:81515896 original size:53 final size:54
Alignment explanation
Indices: 81515831--81516016 Score: 268
Period size: 53 Copynumber: 3.5 Consensus size: 54
81515821 AGGGCAAAAT
* * *
81515831 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
81515884 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* ** *
81515937 GGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
81515991 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
81516017 AGTAATTTCA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
53 62 0.53
54 56 0.47
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:81515973 original size:80 final size:81
Alignment explanation
Indices: 81515849--81516016 Score: 248
Period size: 80 Copynumber: 2.1 Consensus size: 81
81515839 TACCCCACAA
* * * *
81515849 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
81515914 AATTCTACCCTAC-GG
66 AATTCTACCCTACAGG
* * * * *
81515929 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
81515994 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
81516010 GGTATTT
1 GGTATTT
81516017 AGTAATTTCA
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 69 0.88
81 9 0.12
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:81516065 original size:27 final size:27
Alignment explanation
Indices: 81516028--81516514 Score: 602
Period size: 27 Copynumber: 18.3 Consensus size: 27
81516018 GTAATTTCAC
*
81516028 AATC-AGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81516054 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
81516081 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
81516108 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81516135 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81516162 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81516189 AA-CTGAGGGTAAAATGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
81516216 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81516243 AA-CTGAGGGTAAAA-GGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*** **
81516269 AATCGAGGGTAAAATAATAATT-TACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81516295 AAT-GAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
81516321 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81516348 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
81516375 AATC-AGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81516401 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
81516428 AATCGAGGGTAAAACGGTAATT-T-TAA
1 AATCGAGGGTAAAACGGTAATTCTGT-A
*
81516454 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
81516481 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81516508 AATCGAG
1 AATCGAG
81516515 AGTACTTTGG
Statistics
Matches: 407, Mismatches: 36, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
25 18 0.04
26 89 0.22
27 295 0.72
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:81516510 original size:80 final size:81
Alignment explanation
Indices: 81516028--81516514 Score: 604
Period size: 80 Copynumber: 6.1 Consensus size: 81
81516018 GTAATTTCAC
* *
81516028 AATC-AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
* *
81516092 AACCAGTAATTCTATA
66 AAACAGTAATTCTGTA
* **
81516108 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC-AGTAATTCTGTAAA-TCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACT-GAGGG
81516171 TAAAACAGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * * *
81516189 AA-CTGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGT
*
81516253 AAAA-GGTAATTCTGTA
65 AAAACAGTAATTCTGTA
*** **
81516269 AATCGAGGGTAAAATAATAATT-TACAAAT-GAGGGTAAAACGATAATTCTGTAAA-TCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGT
*
81516331 AAAATAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * *
81516348 AA-CTGAGGGTAAAATGGTAATTCTGTAAATC-AGGGTAAAATGGTAATTCTGTAAACTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGT
*
81516411 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
81516428 AATCGAGGGTAAAACGGTAATT-T-TAAAATCGAGGGTAAAACGATAATTCTGTAAA-TCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTGT-AAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGG
* *
81516490 TAAAACGGTAATTCTATA
64 TAAAACAGTAATTCTGTA
81516508 AATCGAG
1 AATCGAG
81516515 AGTACTTTGG
Statistics
Matches: 357, Mismatches: 33, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
77 1 0.00
78 35 0.10
79 41 0.11
80 155 0.43
81 124 0.35
82 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:81518507 original size:6 final size:6
Alignment explanation
Indices: 81518496--81518597 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
81518486 AACCAAAATG
*
81518496 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
81518544 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
81518593 AGAAT
1 AGAAT
81518598 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:81518511 original size:30 final size:29
Alignment explanation
Indices: 81518475--81518597 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
81518465 AAGAAACATT
* * *
81518475 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
81518505 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
81518535 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
81518565 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
81518596 AT
1 AT
81518598 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:81518769 original size:27 final size:27
Alignment explanation
Indices: 81518739--81518790 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
81518729 GTGACCGAGT
*
81518739 CACCAG-ATACAGATATTGTGGCAAAGC
1 CACCAGAAT-CAGATAATGTGGCAAAGC
81518766 CACCAGAATCAGATAATGTGGCAAA
1 CACCAGAATCAGATAATGTGGCAAA
81518791 CCGACCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGAATCAGATAATGTGGCAAAGC
Found at i:81519001 original size:22 final size:22
Alignment explanation
Indices: 81518953--81519011 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
81518943 GTAAATACAT
*
81518953 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
81518975 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
81518997 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
81519012 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:81519138 original size:27 final size:26
Alignment explanation
Indices: 81519099--81519181 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
81519089 TCGATCGGTC
* *
81519099 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
81519125 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
81519152 AACAAATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
81519179 AAC
1 AAC
81519182 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.14
27 44 0.86
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:81519568 original size:54 final size:54
Alignment explanation
Indices: 81519380--81519575 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
81519370 GAGGCAAAAT
* * * **
81519380 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
* * *
81519434 GGT-ATTTCTACCCTACAAGGGTA-TTTCGACAATTCTACCCTACGGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTC
* *
81519488 GGTAATTCTACCCTATC-AGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTA-CAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
81519542 GGTAATTTTACCCTACAAGGGTATTTTAGTAATT
1 GGTAATTTTACCCTACAAGGGTATTTTAGTAATT
81519576 TCACAATTGA
Statistics
Matches: 123, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
53 7 0.06
54 108 0.88
55 8 0.07
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
Found at i:81519576 original size:27 final size:27
Alignment explanation
Indices: 81519380--81519567 Score: 225
Period size: 27 Copynumber: 7.0 Consensus size: 27
81519370 GAGGCAAAAT
* * * *
81519380 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81519407 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81519434 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** **
81519461 GACAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81519488 GGTAATTCTACCCTATC-AGGGTATTTT
1 GGTAATTCTACCCTA-CAAGGGTATTTC
* * *
81519515 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81519542 GGTAATTTTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
81519568 TAGTAATTTC
Statistics
Matches: 135, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
27 134 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81519617 original size:27 final size:27
Alignment explanation
Indices: 81519584--81519733 Score: 203
Period size: 27 Copynumber: 5.6 Consensus size: 27
81519574 TTTCACAATT
*
81519584 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
*
81519611 GAGGGTAAAAC-GATAATTTTGTAAACC
1 GAGGGTAAAACAG-TAATTTTGTAAATC
* * *
81519638 GAGGGTAAACCAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
* **
81519665 GAGGGTAAAACGGTAATTTTACAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
*
81519692 GAGGGTAAAATAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTTTGTAAATC
81519719 GAGGGTAAAACAGTA
1 GAGGGTAAAACAGTA
81519734 TGTAACACCC
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 104 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTTTGTAAATC
Found at i:81520605 original size:37 final size:37
Alignment explanation
Indices: 81520546--81520654 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
81520536 AGCTCAGACG
* *
81520546 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81520583 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81520620 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81520655 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81520939 original size:50 final size:50
Alignment explanation
Indices: 81520804--81520950 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
81520794 CATCGCCTAC
*
81520804 ATATTTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
*
81520854 ATATTTCACATTGACCATTTGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
81520904 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
81520951 TCACCACATT
Statistics
Matches: 92, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
49 6 0.07
50 85 0.92
51 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:81521000 original size:47 final size:47
Alignment explanation
Indices: 81520909--81521147 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
81520899 TATATATATT
* * * * *
81520909 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * *
81520954 CCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
81521001 TCACATTGGCCATTCGGCCTTACCACATATATGCATGCTCAAATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
81521048 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
81521095 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
81521142 TCACAT
1 TCACAT
81521148 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 18 0.10
46 1 0.01
47 159 0.89
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:81521073 original size:22 final size:22
Alignment explanation
Indices: 81521047--81521122 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
81521037 GCTCAAATTC
81521047 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
81521069 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
81521093 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81521116 ATCACAT
1 ATCACAT
81521123 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81524345 original size:27 final size:27
Alignment explanation
Indices: 81523899--81524346 Score: 510
Period size: 27 Copynumber: 16.6 Consensus size: 27
81523889 GTGTCACACA
81523899 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* * * *
81523926 ATAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
81523953 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* *
81523980 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
81524007 GTAATTTTACAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
81524034 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
81524061 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* *
81524088 GTAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
81524115 GTAATTTTACAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
81524142 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
81524169 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* *
81524196 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
81524223 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
81524250 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
81524277 GTAATTTTAAAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
81524304 ATAATTCTGTAAATCGAGGGTAGAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
81524331 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
81524347 GGAGTACTTT
Statistics
Matches: 358, Mismatches: 54, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 352 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:81524346 original size:54 final size:54
Alignment explanation
Indices: 81523896--81524343 Score: 594
Period size: 54 Copynumber: 8.3 Consensus size: 54
81523886 GGGGTGTCAC
* * *
81523896 ACAGTAATTCTGTAAACTGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
** *
81523950 ATGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* ** * *
81524004 ACAGTAATTTTACAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* * *
81524058 ATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* ** * * *
81524112 ACAGTAATTTTACAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* * *
81524166 ATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
** *
81524220 ATGGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAA
1 ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* * * *
81524274 ACGGTAATT-T-TAAAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAGA
1 ACAGTAATTCTGT-AAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
81524328 ACAGTAATTCTGTAAA
1 ACAGTAATTCTGTAAA
81524344 TCGGGAGTAC
Statistics
Matches: 344, Mismatches: 46, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
52 1 0.00
53 5 0.01
54 333 0.97
55 4 0.01
56 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
ACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
Found at i:81525583 original size:31 final size:31
Alignment explanation
Indices: 81525548--81525611 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81525538 CCTTTTCATG
81525548 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
81525579 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
81525610 TT
1 TT
81525612 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:81525854 original size:24 final size:24
Alignment explanation
Indices: 81525803--81525969 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
81525793 GCTTTATCAT
* *
81525803 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * **
81525828 ATAACTGGGGCAAAATCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
81525852 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
81525875 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
81525899 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
81525923 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
81525947 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
81525970 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:81525903 original size:71 final size:71
Alignment explanation
Indices: 81525802--81525969 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
81525792 TGCTTTATCA
* *
81525802 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
81525866 AGCCCTTT
64 AGCCCTTT
* * **
81525874 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
81525939 CCCTTT
66 CCCTTT
81525945 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
81525970 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 52 0.59
72 36 0.41
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:81526044 original size:20 final size:20
Alignment explanation
Indices: 81526019--81526079 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
81526009 TTATGATTAC
81526019 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
81526039 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
81526059 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
81526079 A
1 A
81526080 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81526154 original size:25 final size:25
Alignment explanation
Indices: 81526122--81526169 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81526112 ATACATAAAC
* * *
81526122 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
81526147 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
81526170 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:81531891 original size:43 final size:43
Alignment explanation
Indices: 81531824--81531991 Score: 166
Period size: 43 Copynumber: 3.9 Consensus size: 43
81531814 CTCATACAAA
* *
81531824 GCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCGAT
1 GCCAATGTCCCAGACAG-GGTCTTACACGTAATCACATATCGAT
* * *
81531867 GCCACTGTCCCAAACAGGGTCTTACACG-AACTCATATAT-GAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAA-TCACATATCGAT
* * *
81531909 G-CAATGTCCCAGACATGGTCTTACACATAAATCACAAATCGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGT-AATCACATATCGAT
* * *
81531952 GCCAAAGTCTCAGAC-GTGGTCTTACACGAAATCACATATC
1 GCCAATGTCCCAGACAG-GGTCTTACACGTAATCACATATC
81531992 AGAATCTTAT
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
41 22 0.22
42 12 0.12
43 45 0.45
44 22 0.22
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCAATGTCCCAGACAGGGTCTTACACGTAATCACATATCGAT
Found at i:81531973 original size:85 final size:84
Alignment explanation
Indices: 81531830--81531990 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 84
81531820 CAAAGCCAAC
* ** * **
81531830 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACATAATCACAAATCGATGCCAAAGTCCCAAACAGGGTCTTACACG
* *
81531895 AACTCATATATGATGCAAT
66 AAATCACATATGATGCAAT
* *
81531914 GTCCCAGACATGGTCTTACACATAAATCACAAATCGATGCCAAAGTCTCAGAC-GTGGTCTTACA
1 GTCCCAGACATGGTCTTACACAT-AATCACAAATCGATGCCAAAGTCCCAAACAG-GGTCTTACA
81531978 CGAAATCACATAT
64 CGAAATCACATAT
81531991 CAGAATCTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
84 21 0.32
85 44 0.68
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACATAATCACAAATCGATGCCAAAGTCCCAAACAGGGTCTTACACG
AAATCACATATGATGCAAT
Found at i:81535454 original size:42 final size:42
Alignment explanation
Indices: 81535344--81535488 Score: 123
Period size: 42 Copynumber: 3.4 Consensus size: 42
81535334 TTTGAAGATG
* * * *
81535344 TGATTTCGTGTAAGACCATATCT-AGACTGTTGGCATC-AATT
1 TGATTTCGTGTAAGACCATATCTGGGAC-ATTGGCATCGTATA
* * *
81535385 TGAGATTTACGTATAAGACCATGTCTGGGACATTGGCATCGTGTA
1 T--GATTT-CGTGTAAGACCATATCTGGGACATTGGCATCGTATA
* * * *
81535430 TGATTTCGTGTAAGACCCTATCTGGGATAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATATCTGGGACATTGGCATCG-TATA
*
81535473 TGATTTCATGTAAGAC
1 TGATTTCGTGTAAGAC
81535489 TTCGTCTGGG
Statistics
Matches: 83, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 27 0.33
44 23 0.28
45 5 0.06
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATATCTGGGACATTGGCATCGTATA
Found at i:81535507 original size:43 final size:42
Alignment explanation
Indices: 81535398--81535508 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
81535388 GATTTACGTA
* ** * *
81535398 TAAGACCATGTCTGGGACATTGGCATCGTGTATGATTTCGTG
1 TAAGACCCTGTCTGGGATGTTGGCATCGTATATGATTTCATG
* *
81535440 TAAGACCCTATCTGGGATAG-TGGCATCGATATTTGATTTCATG
1 TAAGACCCTGTCTGGGAT-GTTGGCATCG-TATATGATTTCATG
*
81535483 TAAGA-CTTCGTCTGGGATGTTGGCAT
1 TAAGACCCT-GTCTGGGATGTTGGCAT
81535509 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (42 bp):
TAAGACCCTGTCTGGGATGTTGGCATCGTATATGATTTCATG
Found at i:81537517 original size:32 final size:32
Alignment explanation
Indices: 81537479--81537547 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
81537469 TAGTATAAGT
81537479 ATGAAAATGGTTCAGCTAAGCTTGGGTTTTGA
1 ATGAAAATGGTTCAGCTAAGCTTGGGTTTTGA
** *
81537511 ATGAAAATGGTTTGGCTAGGCTTGGGTTTTGA
1 ATGAAAATGGTTCAGCTAAGCTTGGGTTTTGA
81537543 A-GAAA
1 ATGAAA
81537548 TTGAATACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 4 0.12
32 30 0.88
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.33
Consensus pattern (32 bp):
ATGAAAATGGTTCAGCTAAGCTTGGGTTTTGA
Found at i:81541067 original size:40 final size:40
Alignment explanation
Indices: 81541023--81541168 Score: 179
Period size: 39 Copynumber: 3.7 Consensus size: 40
81541013 GTTCAAAACA
* * ***
81541023 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
81541063 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
81541103 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
81541142 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
81541169 TTCGCACATT
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 56 0.58
40 40 0.42
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:81541135 original size:39 final size:39
Alignment explanation
Indices: 81541053--81541176 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
81541043 TATGGTAACC
* * *
81541053 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
81541093 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
81541132 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
81541171 CGCACA
1 CGCACA
81541177 TTCATACACA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 64 0.79
40 17 0.21
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:81543340 original size:23 final size:24
Alignment explanation
Indices: 81543310--81543371 Score: 108
Period size: 23 Copynumber: 2.6 Consensus size: 24
81543300 CTTATTATGT
81543310 TCGCACACATAGTGCCATAGT-AA
1 TCGCACACATAGTGCCATAGTAAA
81543333 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
81543357 TCACACACATAGTGC
1 TCGCACACATAGTGC
81543372 ATTTGAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 21 0.57
24 16 0.43
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:81552968 original size:39 final size:39
Alignment explanation
Indices: 81552905--81553284 Score: 427
Period size: 39 Copynumber: 9.7 Consensus size: 39
81552895 CACCAACACA
* * * * * * *
81552905 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * *
81552945 AAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
81552984 AAGCCTGCAGATCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
81553023 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCTAGCACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
*
81553063 AAGCCTGCGGACCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * *
81553102 AAGCCTGCGGACCTTAAGTCCGGATATAGTACTAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
81553141 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
81553181 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
81553220 AAGCCTGCAGACCTTAAGTCTGGATACAATTCCAGCACA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
81553259 AATCCTACGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATA
81553285 TACATCAAAT
Statistics
Matches: 288, Mismatches: 50, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
39 220 0.76
40 68 0.24
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:81553047 original size:79 final size:78
Alignment explanation
Indices: 81552937--81553284 Score: 426
Period size: 79 Copynumber: 4.4 Consensus size: 78
81552927 GGATATAGTA
* * * * * *
81552937 CCAGTACGAAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCAGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAG
81553002 TCCAGATACAATT
66 TCCAGATACAATT
* * * * * *
81553015 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCTAGCACGAAGCCTGCGGACCTTAA
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAA
81553080 GTCCAGATACAATT
65 GTCCAGATACAATT
* * * * * * *
81553094 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACTAGTACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCACGAAGCCTGC-AGACCTTAA
* *
81553159 GCCCGGATACAATT
65 GTCCAGATACAATT
* *
81553173 CCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCAGACCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAG
**
81553238 TCTGGATACAATT
66 TCCAGATACAATT
* * *
81553251 CCAGCACAAATCCTACGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
81553285 TACATCAAAT
Statistics
Matches: 230, Mismatches: 38, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
78 94 0.41
79 136 0.59
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (78 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGCACGAAGCCTGCAGACCTTAAG
TCCAGATACAATT
Found at i:81553118 original size:118 final size:118
Alignment explanation
Indices: 81552905--81553257 Score: 499
Period size: 118 Copynumber: 3.0 Consensus size: 118
81552895 CACCAACACA
* * * * * * *
81552905 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGTGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * * *
81552970 ATAGTACCAGTACGAAGCCTGCAGATCTTAAGTCCAGATACAATTCCAGCACG
66 ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
* *
81553023 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCTAGCACGAAGCCTGCGGACCTTAAGTCCAGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * * *
81553088 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACTAGTACG
66 ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
*
81553141 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
81553206 ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCTGGATACAATTCCAGCAC
66 ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCAC
81553258 AAATCCTACG
Statistics
Matches: 204, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 204 1.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (118 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:81553198 original size:157 final size:157
Alignment explanation
Indices: 81552937--81553286 Score: 522
Period size: 157 Copynumber: 2.2 Consensus size: 157
81552927 GGATATAGTA
* *
81552937 CCAGTACGAAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCAGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCAGATCTTAAG
* * * *
81553002 TCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCTAGCACGAAGC
66 CCCAGATACAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACAATTCCAGCACGAAGC
*
81553067 CTGCGGACCTTAAGTCCAGATACAATT
131 CTGCAGACCTTAAGTCCAGATACAATT
* * *
81553094 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACTAGTACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCAGATC-TTAA
* * *
81553159 GCCCGGATACAATTCCAGCATGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAG
65 GCCCAGATACAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACAATTCCAGCACGAAG
**
81553223 CCTGCAGACCTTAAGTCTGGATACAATT
130 CCTGCAGACCTTAAGTCCAGATACAATT
* * *
81553251 CCAGCACAAATCCTACGGACCTTAAGTCCGGATATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
81553287 CATCAAATAT
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
157 143 0.82
158 31 0.18
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (157 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACGAAGCCTGCAGATCTTAAG
CCCAGATACAATTCCAGCACGAAGCCTGCGGGACCTTAAGCCCGGATACAATTCCAGCACGAAGC
CTGCAGACCTTAAGTCCAGATACAATT
Found at i:81561449 original size:39 final size:39
Alignment explanation
Indices: 81561386--81561764 Score: 481
Period size: 39 Copynumber: 9.7 Consensus size: 39
81561376 CACCAACACA
* * * * * * *
81561386 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
81561426 AAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
81561465 AAGCCTGCGGATCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
81561504 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
81561544 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * * *
81561583 AAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
81561622 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
81561662 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
81561701 AAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCAC-
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
81561739 AAGCCTACGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATA
81561765 TACATCAAAT
Statistics
Matches: 299, Mismatches: 38, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
38 24 0.08
39 203 0.68
40 72 0.24
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:81561530 original size:79 final size:78
Alignment explanation
Indices: 81561377--81561766 Score: 485
Period size: 79 Copynumber: 5.0 Consensus size: 78
81561367 GAATTCAATC
* * * * * * * * *
81561377 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTA
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTA
*
81561442 AGTCCGGATATAGT
65 AGTCCGGATATAAT
* * * * *
81561456 ACCAGTACGAAGCCTGCGGATCTTAAGTCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTA
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTA
* *
81561521 AGCCCGGATACAAT
65 AGTCCGGATATAAT
* *
81561535 TCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGACCTTAA
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
*
81561600 GTCCGGATATAGT
66 GTCCGGATATAAT
* * * * *
81561613 ACCAGTACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTA
1 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTA
*
81561678 AGTCCGGATACAAT
65 AGTCCGGATATAAT
* * *
81561692 TCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCAC-AAGCCTACGGACCTTAA
1 ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
81561756 GTCCGGATATA
66 GTCCGGATATA
81561767 CATCAAATAT
Statistics
Matches: 264, Mismatches: 45, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
77 26 0.10
78 88 0.33
79 150 0.57
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
GTCCGGATATAAT
Found at i:81561599 original size:118 final size:118
Alignment explanation
Indices: 81561386--81561744 Score: 540
Period size: 118 Copynumber: 3.1 Consensus size: 118
81561376 CACCAACACA
* * * * * *
81561386 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * * *
81561451 ATAGTACCAGTACGAAGCCTGCGGATCTTAAGTCCAGATACAATTCCAGCACG
66 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
81561504 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * *
81561569 ACAATTCCAGCACGAAGCCTGTGGACCTTAAGTCCGGATATAGTACCAGTACG
66 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
81561622 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
*
81561687 ACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCAC-
66 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
81561739 AAGCCT
1 AAGCCT
81561745 ACGGACCTTA
Statistics
Matches: 217, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
117 6 0.03
118 211 0.97
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (118 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:81564029 original size:30 final size:30
Alignment explanation
Indices: 81563995--81564055 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81563985 TTCCCGAGCC
81563995 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
81564025 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
81564055 T
1 T
81564056 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:81575705 original size:46 final size:48
Alignment explanation
Indices: 81575651--81575750 Score: 125
Period size: 46 Copynumber: 2.1 Consensus size: 48
81575641 AGATGTTACA
* * * *
81575651 CTTACACTAGC-TTACGTCTCGAGGCCGAT-GCATGTCCCAGACATGTT
1 CTTACACTAGCACT-CGTCTCAAGGCCGATACCATGTCCCAGACATATT
*
81575698 -TTACACTAGCACTCGTCTCAATGCCGATACCATGTCCCAGACATATT
1 CTTACACTAGCACTCGTCTCAAGGCCGATACCATGTCCCAGACATATT
81575745 CTTACA
1 CTTACA
81575751 TTGGCTCTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
46 23 0.51
47 17 0.38
48 5 0.11
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (48 bp):
CTTACACTAGCACTCGTCTCAAGGCCGATACCATGTCCCAGACATATT
Found at i:81583335 original size:46 final size:45
Alignment explanation
Indices: 81583242--81583360 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 45
81583232 GTACAAATGC
*
81583242 CATGTCCCAGACATGGTCATACACT-GAC-ACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTACATCTCGTAGCCGATG
*
81583287 CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TACATCTCGTA-GCCGATG
* *
81583333 CATGTCCTAGACATGGCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
81583361 CACACAAGTG
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
44 10 0.15
45 17 0.26
46 39 0.59
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTACATCTCGTAGCCGATG
Found at i:81592248 original size:40 final size:40
Alignment explanation
Indices: 81592182--81592348 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
81592172 AAATTGAATG
* * *
81592182 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81592221 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
81592261 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81592301 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81592341 ATATCCGG
1 ATATCCGG
81592349 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81602443 original size:14 final size:14
Alignment explanation
Indices: 81602426--81602459 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
81602416 TTGGGAATTG
81602426 AAATTTAAATTTTA
1 AAATTTAAATTTTA
*
81602440 AAATTT-AGTTTTA
1 AAATTTAAATTTTA
81602453 AAATTTA
1 AAATTTA
81602460 TGGTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTTAAATTTTA
Found at i:81602453 original size:13 final size:14
Alignment explanation
Indices: 81602435--81602475 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
81602425 GAAATTTAAA
81602435 TTTTAAAATTTA-G
1 TTTTAAAATTTATG
81602448 TTTTAAAATTTATG
1 TTTTAAAATTTATG
*
81602462 GTTTATAAATTTAT
1 TTTTA-AAATTTAT
81602476 TATTTCTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 5 0.20
15 8 0.32
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
TTTTAAAATTTATG
Found at i:81606440 original size:20 final size:18
Alignment explanation
Indices: 81606408--81606478 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 18
81606398 TAGTTACAAA
81606408 AAAATTT-AAAATAGTTTT
1 AAAATTTCAAAATA-TTTT
*
81606426 CAAATTTTCAAAATAATTTTT
1 -AAAATTTCAAAAT-A-TTTT
81606447 AAAA-TTCAAAATATTTAT
1 AAAATTTCAAAATATTT-T
81606465 AAAAATTTCAAAAT
1 -AAAATTTCAAAAT
81606479 TTAAATTTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 3 0.07
18 2 0.05
19 18 0.41
20 16 0.36
21 5 0.11
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (18 bp):
AAAATTTCAAAATATTTT
Found at i:81606456 original size:19 final size:19
Alignment explanation
Indices: 81606407--81606478 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
81606397 ATAGTTACAA
* *
81606407 AAAAATTTAAAATAGTTTT
1 AAAAATTCAAAATAATTTT
**
81606426 CAAATTTTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
*
81606446 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
81606465 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
81606479 TTAAATTTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
18 4 0.10
19 15 0.36
20 23 0.55
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:81606513 original size:18 final size:18
Alignment explanation
Indices: 81606447--81606513 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
81606437 AATAATTTTT
*
81606447 AAAATTCAAAATATTTATA
1 AAAATTTAAAA-ATTTATA
*
81606466 AAAATTTCAAAATTTA-A
1 AAAATTTAAAAATTTATA
***
81606483 ATTTTGTTAAAAATTTATA
1 AAAAT-TTAAAAATTTATA
81606502 AAAATTTAAAAA
1 AAAATTTAAAAA
81606514 AATTCTAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
17 3 0.08
18 22 0.59
19 12 0.32
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (18 bp):
AAAATTTAAAAATTTATA
Found at i:81609598 original size:24 final size:24
Alignment explanation
Indices: 81609566--81609652 Score: 174
Period size: 24 Copynumber: 3.6 Consensus size: 24
81609556 AATCTCAAAT
81609566 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81609590 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81609614 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81609638 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
81609653 ACATAATAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:81609666 original size:48 final size:48
Alignment explanation
Indices: 81609566--81609674 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
81609556 AATCTCAAAT
** * *
81609566 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
81609614 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
81609662 GCACTATGTGTGC
1 GCACTATGTGTGC
81609675 AACATTCGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:81615496 original size:29 final size:29
Alignment explanation
Indices: 81615463--81615594 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
81615453 GTGACGAGAT
81615463 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81615492 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
81615521 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
81615550 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
81615579 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81615595 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81623434 original size:29 final size:29
Alignment explanation
Indices: 81623401--81623532 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
81623391 GTGACGAGAT
81623401 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81623430 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
81623459 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
81623488 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
81623517 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81623533 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81629692 original size:24 final size:24
Alignment explanation
Indices: 81629660--81629746 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
81629650 AATCTCAAAT
*
81629660 GCACTATGTGTGCCATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81629684 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81629708 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
81629732 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
81629747 ACATAATAAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:81629760 original size:48 final size:48
Alignment explanation
Indices: 81629660--81629768 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
81629650 AATCTCAAAT
** * *
81629660 GCACTATGTGTGCCATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCCATTTACTATGGCACTATGTGTGCGACATAATATA
*
81629708 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCCATTTACTATGGCACTATGTGTGCG-ACATAATATA
81629756 GCACTATGTGTGC
1 GCACTATGTGTGC
81629769 AACATTCGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 50 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCCATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:81632895 original size:22 final size:23
Alignment explanation
Indices: 81632852--81632929 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
81632842 GAGCCATGAT
**
81632852 CGGTAAGCTCCGAAGAACTG-AA
1 CGGTAAGCTCCGAAGAGTTGAAA
*
81632874 CGGTAAGCTCCGTAGAGTTGAAA
1 CGGTAAGCTCCGAAGAGTTGAAA
* * *
81632897 TGGTAGGCCCCGAAGAGTTGAAA
1 CGGTAAGCTCCGAAGAGTTGAAA
*
81632920 TGGTAAGCTC
1 CGGTAAGCTC
81632930 TTACGAGCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 17 0.37
23 29 0.63
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (23 bp):
CGGTAAGCTCCGAAGAGTTGAAA
Done.