Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 274 of 345
Found at i:81632960 original size:23 final size:24
Alignment explanation
Indices: 81632919--81632986 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 24
81632909 AAGAGTTGAA
** *
81632919 ATGGTAAGCTCTTACGAGCTAAAT
1 ATGGTAAGCTCCAATGAGCTAAAT
*
81632943 -TGGTAAGCTCCAATGAGCT-GAT
1 ATGGTAAGCTCCAATGAGCTAAAT
*
81632965 ACGGTAAGCT-CATATGAGCTAA
1 ATGGTAAGCTCCA-ATGAGCTAA
81632987 GGTGAGTCCG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
22 4 0.11
23 31 0.89
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (24 bp):
ATGGTAAGCTCCAATGAGCTAAAT
Found at i:81634870 original size:35 final size:34
Alignment explanation
Indices: 81634803--81634870 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 34
81634793 AAAGGTCCAG
** *
81634803 TCGATAACCATTGTCATGGTGTTGCTCTATAGAT
1 TCGATAACCATTGTCATGGTGTCACTCCATAGAT
*
81634837 TCGATAGACCGTTGTCATGGTGTCACTCCATAGA
1 TCGATA-ACCATTGTCATGGTGTCACTCCATAGA
81634871 ACCAGTGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 6 0.21
35 23 0.79
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (34 bp):
TCGATAACCATTGTCATGGTGTCACTCCATAGAT
Found at i:81655499 original size:40 final size:40
Alignment explanation
Indices: 81655394--81655640 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
81655384 GGATTGATAC
* *
81655394 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
81655434 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81655473 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
81655513 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81655553 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81655593 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
81655633 CC-GGCTAA
1 CCGGGCTAA
81655641 ACTCCGAAGG
Statistics
Matches: 194, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 43 0.22
40 151 0.78
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81659716 original size:79 final size:80
Alignment explanation
Indices: 81659572--81659789 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 80
81659562 GAATCACGTA
* * * ** * * * *
81659572 CCTTCGGAATTTAACCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGCCTGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
81659636 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
81659651 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATA
81659714 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* * * * *
81659730 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
81659790 CATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.60
80 44 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATATAG
TAACTCGCACAAATG
Found at i:81659789 original size:40 final size:40
Alignment explanation
Indices: 81659586--81659789 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
81659576 CGGAATTTAA
* ** *
81659586 CCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
81659626 CTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81659666 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81659705 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
81659745 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81659785 CCGGA
1 CCGGA
81659790 CATCATTCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81664867 original size:80 final size:80
Alignment explanation
Indices: 81664783--81664931 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
81664773 TATGGTAACC
* * * *
81664783 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
81664847 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
81664863 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
81664928 CCGG
66 CCGG
81664932 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:81664873 original size:40 final size:38
Alignment explanation
Indices: 81664824--81664931 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
81664814 ATCACGATTT
*
81664824 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
81664864 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
81664904 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
81664932 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:81672469 original size:40 final size:39
Alignment explanation
Indices: 81672340--81672528 Score: 159
Period size: 41 Copynumber: 4.7 Consensus size: 39
81672330 GCTACTCGTT
* * * *
81672340 CAAATGCCTTCGGGACATAGCCCGGTCTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--AATTGTAACTCACA
* * *
81672381 CAAATGCCTTCGGGACTTAAACCCGGATTTAGTAACTCGCCA
1 CAAATGCCTTCGGGACTT-AGCCCGGAATT-GTAACTC-ACA
*
81672423 CCAATGCCTTCGGG-CTTAGCCCGGAAGTTGTAAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TTGT-AACTCACA
* * * *
81672463 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTGTAACTCA-CA
81672504 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81672529 CATCATTCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
39 2 0.02
40 42 0.34
41 56 0.46
42 22 0.18
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTGTAACTCACA
Found at i:81680224 original size:79 final size:80
Alignment explanation
Indices: 81680056--81680240 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
81680046 GCTACTCGTT
* * * *
81680056 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCCA
* *
81680120 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* ** *
81680137 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCAG
* *
81680200 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
81680216 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
81680241 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:81680240 original size:40 final size:40
Alignment explanation
Indices: 81680056--81680240 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
81680046 GCTACTCGTT
* * * *
81680056 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
81680096 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
81680136 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT-AGCA
* * *
81680175 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
81680216 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81680241 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 79 0.65
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:81683075 original size:40 final size:40
Alignment explanation
Indices: 81682983--81683075 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
81682973 TGCATAATAG
* * * *
81682983 AGGCACCGAAGTGCAGACAAAGGTACAAATGTGCAATCAA
1 AGGCACCGAAGTGAAAACAAAGGCACAAATGTGCAAACAA
* *
81683023 GGGCACTC-AAGTGAAAACAAGGGCACCAAA-GTGCAAACAA
1 AGGCAC-CGAAGTGAAAACAAAGGCA-CAAATGTGCAAACAA
81683063 AGGCACCGAAGTG
1 AGGCACCGAAGTG
81683076 CAAATCCCCT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
39 1 0.02
40 37 0.86
41 5 0.12
ACGTcount: A:0.42, C:0.22, G:0.27, T:0.10
Consensus pattern (40 bp):
AGGCACCGAAGTGAAAACAAAGGCACAAATGTGCAAACAA
Found at i:81683076 original size:20 final size:20
Alignment explanation
Indices: 81682983--81683079 Score: 90
Period size: 20 Copynumber: 4.8 Consensus size: 20
81682973 TGCATAATAG
* *
81682983 AGGCACCGAAGTGCAGACAA
1 AGGCACCAAAGTGCAAACAA
* *
81683003 AGGTA-CAAATGTGCAATCAA
1 AGGCACCAAA-GTGCAAACAA
* *
81683023 GGGCACTC-AAGTGAAAACAA
1 AGGCAC-CAAAGTGCAAACAA
*
81683043 GGGCACCAAAGTGCAAACAA
1 AGGCACCAAAGTGCAAACAA
*
81683063 AGGCACCGAAGTGCAAA
1 AGGCACCAAAGTGCAAA
81683080 TCCCCTACAA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
19 4 0.06
20 55 0.89
21 2 0.03
22 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.26, T:0.09
Consensus pattern (20 bp):
AGGCACCAAAGTGCAAACAA
Found at i:81690550 original size:13 final size:13
Alignment explanation
Indices: 81690534--81690565 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
81690524 AATTTCACCA
81690534 TTAATTTTCATCG
1 TTAATTTTCATCG
*
81690547 TTAATTTTCATTG
1 TTAATTTTCATCG
81690560 TTAATT
1 TTAATT
81690566 CATTTTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.59
Consensus pattern (13 bp):
TTAATTTTCATCG
Found at i:81693415 original size:49 final size:49
Alignment explanation
Indices: 81693094--81693400 Score: 460
Period size: 49 Copynumber: 6.3 Consensus size: 49
81693084 CCCTTCGGGA
* * * * * *
81693094 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81693141 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81693188 CTTATCACATATATATACACCTTCTCATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81693237 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81693286 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81693335 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81693384 CTTTTCACATATATATA
1 CTTATCACATATATATA
81693401 TCTCATATAT
Statistics
Matches: 239, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 45 0.19
49 193 0.81
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81701390 original size:20 final size:20
Alignment explanation
Indices: 81701365--81701404 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81701355 TCATTCCATC
*
81701365 AAGTTTTTCCTCCGGGCTCT
1 AAGTTTTTCCTCCAGGCTCT
81701385 AAGTTTTTCCTCCAGGCTCT
1 AAGTTTTTCCTCCAGGCTCT
81701405 TACTTTCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.30, G:0.17, T:0.40
Consensus pattern (20 bp):
AAGTTTTTCCTCCAGGCTCT
Found at i:81701415 original size:20 final size:20
Alignment explanation
Indices: 81701372--81701416 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
81701362 ATCAAGTTTT
* * *
81701372 TCCTCCGGGCTCTAAGTTTT
1 TCCTCCAGGCTCTAACTTTC
*
81701392 TCCTCCAGGCTCTTACTTTC
1 TCCTCCAGGCTCTAACTTTC
81701412 TCCTC
1 TCCTC
81701417 TTTGAGCTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.09, C:0.38, G:0.13, T:0.40
Consensus pattern (20 bp):
TCCTCCAGGCTCTAACTTTC
Found at i:81702327 original size:32 final size:32
Alignment explanation
Indices: 81702291--81702355 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
81702281 CCAATATCAA
81702291 ACATAACATAAATAGCTAGATTTATAAGTTAG
1 ACATAACATAAATAGCTAGATTTATAAGTTAG
81702323 ACATAACATAAATAGCTAGATTTATAAGTTAG
1 ACATAACATAAATAGCTAGATTTATAAGTTAG
81702355 A
1 A
81702356 ATCATTAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (32 bp):
ACATAACATAAATAGCTAGATTTATAAGTTAG
Found at i:81706830 original size:40 final size:40
Alignment explanation
Indices: 81706785--81706951 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81706775 CGGAATATAA
81706785 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81706825 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
81706865 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81706905 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81706944 CCGGATAT
1 CCGGATAT
81706952 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81706935 original size:80 final size:79
Alignment explanation
Indices: 81706785--81706951 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
81706775 CGGAATATAA
* *
81706785 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
81706850 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
81706865 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
81706927 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
81706944 CCGGATAT
1 CCGGATAT
81706952 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:81707798 original size:17 final size:19
Alignment explanation
Indices: 81707775--81707820 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
81707765 AAGAAGCATG
81707775 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
81707793 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
81707811 AATCATGCTC
1 AATCATGCTC
81707821 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:81714831 original size:40 final size:40
Alignment explanation
Indices: 81714786--81714952 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81714776 CGGAATATAA
81714786 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81714826 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
81714866 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81714906 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81714945 CCGGATAT
1 CCGGATAT
81714953 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81714936 original size:80 final size:79
Alignment explanation
Indices: 81714786--81714952 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
81714776 CGGAATATAA
* *
81714786 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
81714851 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
81714866 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
81714928 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
81714945 CCGGATAT
1 CCGGATAT
81714953 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:81715797 original size:17 final size:19
Alignment explanation
Indices: 81715774--81715819 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
81715764 AAGAAGCATG
81715774 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
81715792 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
81715810 AATCATGCTC
1 AATCATGCTC
81715820 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:81726831 original size:23 final size:23
Alignment explanation
Indices: 81726796--81726853 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
81726786 AAGAGTCTAT
* *
81726796 AGAAAAAGTAAAAGAATAAGA-ATA
1 AGAAAAA-AAAAAGAAAAAGACA-A
81726820 AGAAAAAAAAAAGAAAAAGACAA
1 AGAAAAAAAAAAGAAAAAGACAA
*
81726843 AGAAAAGAAAA
1 AGAAAAAAAAA
81726854 TCGAGAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 22 0.73
24 8 0.27
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (23 bp):
AGAAAAAAAAAAGAAAAAGACAA
Found at i:81726833 original size:17 final size:17
Alignment explanation
Indices: 81726796--81726873 Score: 66
Period size: 17 Copynumber: 4.5 Consensus size: 17
81726786 AAGAGTCTAT
* *
81726796 AGAAAAAGTAAAAGAATA
1 AGAAAAAG-AAAAAAAAA
*
81726814 AGAATAAGAAAAAAAAA
1 AGAAAAAGAAAAAAAAA
* *
81726831 AGAAAAAGACAAAGAAA
1 AGAAAAAGAAAAAAAAA
* *
81726848 AGAAAATCGAGAAAAAAA
1 AGAAAA-AGAAAAAAAAA
*
81726866 AGGAAAAG
1 AGAAAAAG
81726874 GTGAGAAAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
17 28 0.58
18 20 0.42
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (17 bp):
AGAAAAAGAAAAAAAAA
Found at i:81726838 original size:6 final size:6
Alignment explanation
Indices: 81726796--81726853 Score: 66
Period size: 6 Copynumber: 10.0 Consensus size: 6
81726786 AAGAGTCTAT
* * * *
81726796 AGAAAA AGTAAA AGAATA AGAATA AGAAAA A-AAAA AGAAAA AGACAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
81726843 AG-AAA AGAAAA
1 AGAAAA AGAAAA
81726854 TCGAGAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
5 9 0.20
6 35 0.80
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (6 bp):
AGAAAA
Found at i:81726845 original size:35 final size:34
Alignment explanation
Indices: 81726796--81726873 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 34
81726786 AAGAGTCTAT
81726796 AGAAAAAGTAAAAGAATAAGAATAA-GAAAAAAAAA
1 AGAAAAAGTAAAAGAA-AAGAA-AACGAAAAAAAAA
*
81726831 AGAAAAAG-ACAAAGAAAAGAAAATCGAGAAAAAAA
1 AGAAAAAGTA-AAAGAAAAGAAAA-CGAAAAAAAAA
*
81726866 AGGAAAAG
1 AGAAAAAG
81726874 GTGAGAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 2 0.05
34 6 0.16
35 30 0.79
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (34 bp):
AGAAAAAGTAAAAGAAAAGAAAACGAAAAAAAAA
Found at i:81730800 original size:48 final size:48
Alignment explanation
Indices: 81730721--81730912 Score: 190
Period size: 48 Copynumber: 3.9 Consensus size: 48
81730711 ACCACGATTA
* *
81730721 ATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
1 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* * *
81730769 ATGATAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAT
1 ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* * *
81730817 ATG-TGTGCCAATGTAAGACCATATCTGGGATATGGCATCGACATCAGCATTGAT
1 ATGAT-AGCCAATGTAAGACCATGTCTGGGACATGGCATCG------GCATTGAT
* ** *
81730871 ATG-TGTGCCAATGTAAGACCATAACTGGGATATGGCATCGGC
1 ATGAT-AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
81730913 CTCGGCATGT
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
47 1 0.01
48 77 0.62
54 47 0.38
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
ATGATAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
Found at i:81730884 original size:54 final size:54
Alignment explanation
Indices: 81730804--81730910 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
81730794 TAGGACATGG
*
81730804 CATCAGCATTGATATGTGTGCCAATGTAAGACCATATCTGGGATATGGCATCGA
1 CATCAGCATTGATATGTGTGCCAATGTAAGACCATAACTGGGATATGGCATCGA
81730858 CATCAGCATTGATATGTGTGCCAATGTAAGACCATAACTGGGATATGGCATCG
1 CATCAGCATTGATATGTGTGCCAATGTAAGACCATAACTGGGATATGGCATCG
81730911 GCCTCGGCAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (54 bp):
CATCAGCATTGATATGTGTGCCAATGTAAGACCATAACTGGGATATGGCATCGA
Found at i:81730950 original size:48 final size:52
Alignment explanation
Indices: 81730804--81730956 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 52
81730794 TAGGACATGG
81730804 CATCAGCATTGATATGTGTGCCAATGTAAGACCATATCTGGGATATGGCATCGA
1 CATCAGCATTGA-ATGTGT-CCAATGTAAGACCATATCTGGGATATGGCATCGA
* *
81730858 CATCAGCATTGATATGTGTGCCAATGTAAGACCATAACTGGGATATGGCATCGG
1 CATCAGCATTGA-ATGTGT-CCAATGTAAGACCATATCTGGGATATGGCATCGA
* * *
81730912 CCTCGGCATGTG-AT-T-T-C-ATGTAAGACCATATCTAGGATATGGCAT
1 CATCAGCAT-TGAATGTGTCCAATGTAAGACCATATCTGGGATATGGCAT
81730957 TGATATGAGA
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
48 26 0.28
49 1 0.01
51 1 0.01
52 1 0.01
53 2 0.02
54 59 0.64
55 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (52 bp):
CATCAGCATTGAATGTGTCCAATGTAAGACCATATCTGGGATATGGCATCGA
Found at i:81730982 original size:42 final size:42
Alignment explanation
Indices: 81730923--81731128 Score: 128
Period size: 42 Copynumber: 4.8 Consensus size: 42
81730913 CTCGGCATGT
* *
81730923 GATTTCATGTAAGACCATATCTAGGATATGGCATTGATATGA
1 GATTTCATGTAAGACCATATCTAGGACATGGCATCGATATGA
* * *
81730965 GATTTCATGTAAGACCATGTCTGGGACATGGCATCGATGTGA
1 GATTTCATGTAAGACCATATCTAGGACATGGCATCGATATGA
* * * * * * * *
81731007 GGTCTCGTGCAAGACCATGT-TTGGTACATGGCATGGGTACCAATGGGA
1 GATTTCATGTAAGACCATATCTAGG-ACATGGCAT-CG-A--TAT--GA
* * * * *
81731055 GATTTCGTATAAGATCATATCTGGGATATGGCATCGATATGTA
1 GATTTCATGTAAGACCATATCTAGGACATGGCATCGATATG-A
** * *
81731098 GA-CCCATGTAAGACCATGTCTAGAACATGGC
1 GATTTCATGTAAGACCATATCTAGGACATGGC
81731129 TTTGGCATTC
Statistics
Matches: 123, Mismatches: 32, Indels: 18
0.71 0.18 0.10
Matches are distributed among these distances:
41 3 0.02
42 83 0.67
43 4 0.03
44 3 0.02
46 2 0.02
47 1 0.01
48 24 0.20
49 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTAGGACATGGCATCGATATGA
Found at i:81731126 original size:90 final size:90
Alignment explanation
Indices: 81730963--81731128 Score: 199
Period size: 90 Copynumber: 1.8 Consensus size: 90
81730953 GCATTGATAT
* * * * * * *
81730963 GAGATTTCATGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGTCTCGTGCAAGACCATGTT
1 GAGATTTCATATAAGACCATATCTGGGACATGGCATCGATATGAGGACCCATGCAAGACCATGTC
* *
81731028 TGGTACATGGCATGGGTACCAATGG
66 TAGAACATGGCATGGGTACCAATGG
* * * *
81731053 GAGATTTCGTATAAGATCATATCTGGGATATGGCATCGATATGTA-GACCCATGTAAGACCATGT
1 GAGATTTCATATAAGACCATATCTGGGACATGGCATCGATATG-AGGACCCATGCAAGACCATGT
81731117 CTAGAACATGGC
65 CTAGAACATGGC
81731129 TTTGGCATTC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
90 61 0.98
91 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (90 bp):
GAGATTTCATATAAGACCATATCTGGGACATGGCATCGATATGAGGACCCATGCAAGACCATGTC
TAGAACATGGCATGGGTACCAATGG
Found at i:81733307 original size:41 final size:43
Alignment explanation
Indices: 81733208--81733358 Score: 121
Period size: 41 Copynumber: 3.5 Consensus size: 43
81733198 CAATGCCAAC
* * **
81733208 GTCCCAGACGTGGTCTTACATGCTATCTCATATCGATGACACT
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGACACT
* * *
81733251 ATCCCAGACAGGGTCTTACATG-AATCAAATAT-GATGTCGA-T
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGAC-ACT
* * * *
81733292 GTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAAC-
1 GTCCCAGACATGGTCTTACATGCAATCA-A-ATATCGATGAC-ACT
* *
81733337 GTCTCAGACGTGGTCTTACATG
1 GTCCCAGACATGGTCTTACATG
81733359 AGAACACATA
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 25 0.29
42 12 0.14
43 20 0.23
44 4 0.05
45 25 0.29
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGACACT
Found at i:81733693 original size:15 final size:15
Alignment explanation
Indices: 81733669--81733698 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81733659 GTTCTTGATC
81733669 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
81733684 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
81733699 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:81740737 original size:49 final size:50
Alignment explanation
Indices: 81740661--81740905 Score: 262
Period size: 49 Copynumber: 4.9 Consensus size: 50
81740651 TAAACAAGGC
* * * *
81740661 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCGAAT
* * *
81740710 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCGAAT
* * * * *
81740760 CATCTGATACACGTAGTAGCCAGCACTTATTACTACACACGTGACCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCGAA-T
* ** * *
81740811 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCGAAT
** * *
81740860 TATCCAGTACACGTAGTAGCCTACACATT-GTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCAC-TTAGTACTACACACGCGACC
81740906 TCACAATAGA
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 77 0.47
50 50 0.31
51 36 0.22
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCGAAT
Found at i:81740846 original size:101 final size:98
Alignment explanation
Indices: 81740674--81740905 Score: 281
Period size: 101 Copynumber: 2.3 Consensus size: 98
81740664 CTGGTACGCA
* * * *
81740674 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
* *
81740739 GTACTACACACGTGACCTAACCAT-CTGATACACG
66 GTACTACACACGCGACC-AACCATCCAG-TACACG
* **
81740773 TAGTAGCC-AGCACTTATTACTACACACGTGACCGAAGTTATCGGGTATGCATAGTAGCCTGCAC
1 TAGTAGCCTA-CACTTAGTACTACACACGTGACC-AA-TTATCGGGTACACATAGTAGCCTGCAC
* **
81740837 TTAGTACTACACATGCGACCAATTATCCAGTACACG
63 TTAGTACTACACACGCGACCAACCATCCAGTACACG
81740873 TAGTAGCCTACACATT-GTACTACACACGTGACC
1 TAGTAGCCTACAC-TTAGTACTACACACGTGACC
81740906 TCACAATAGA
Statistics
Matches: 114, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
98 1 0.01
99 28 0.25
100 39 0.34
101 46 0.40
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCAGTACACG
Found at i:81751137 original size:123 final size:123
Alignment explanation
Indices: 81750918--81751502 Score: 1107
Period size: 123 Copynumber: 4.8 Consensus size: 123
81750908 GAATTATGTG
*
81750918 AAATGAAATATGGGTGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
81750983 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
81751041 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
81751106 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
81751164 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
81751229 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * *
81751287 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
81751352 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
81751410 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
81751475 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
81751503 AATTATATCC
Statistics
Matches: 451, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 451 1.00
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:81751526 original size:40 final size:40
Alignment explanation
Indices: 81751471--81751714 Score: 292
Period size: 40 Copynumber: 6.1 Consensus size: 40
81751461 TGAATGGTAC
* * * * **
81751471 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
81751511 CCGGGTTAAGACCCGAAGGCAATTGTGGTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
81751551 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
81751591 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
81751631 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
81751671 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
81751711 CCGG
1 CCGG
81751715 TTGTATTCCG
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:81758046 original size:39 final size:39
Alignment explanation
Indices: 81757992--81758154 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
81757982 TGTGAATGTA
81757992 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81758031 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
81758070 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81758109 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
81758149 TGTGCG
1 TGTGCG
81758155 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81758170 original size:40 final size:39
Alignment explanation
Indices: 81757992--81758184 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
81757982 TGTGAATGTA
* *
81757992 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81758031 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
81758070 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81758109 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
81758149 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
81758185 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81761212 original size:19 final size:18
Alignment explanation
Indices: 81761168--81761213 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
81761158 GTAAGGAATT
81761168 ATAAAATAAAAAAATGAA
1 ATAAAATAAAAAAATGAA
* * *
81761186 ACAAAATAGAAAGAATTAA
1 ATAAAATA-AAAAAATGAA
81761205 ATAAAATAA
1 ATAAAATAA
81761214 GGTAAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.17
Consensus pattern (18 bp):
ATAAAATAAAAAAATGAA
Found at i:81769228 original size:40 final size:40
Alignment explanation
Indices: 81769183--81769350 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81769173 CGGAATATAA
81769183 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81769223 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81769263 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
81769303 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81769343 CCGGATAT
1 CCGGATAT
81769351 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81777241 original size:40 final size:40
Alignment explanation
Indices: 81777196--81777363 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81777186 CGGAATATAA
81777196 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81777236 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81777276 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
81777316 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81777356 CCGGATAT
1 CCGGATAT
81777364 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81781727 original size:21 final size:21
Alignment explanation
Indices: 81781698--81781737 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81781688 GTCCCCTGTA
81781698 TTTTGAAAAATTTT-CTAAGCT
1 TTTTG-AAAATTTTCCTAAGCT
*
81781719 TTTTTAAAATTTTCCTAAG
1 TTTTGAAAATTTTCCTAAG
81781738 TTATCGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (21 bp):
TTTTGAAAATTTTCCTAAGCT
Found at i:81782199 original size:100 final size:100
Alignment explanation
Indices: 81782045--81782240 Score: 338
Period size: 100 Copynumber: 2.0 Consensus size: 100
81782035 GTAACACCGT
* *
81782045 AAACCCGTATCCGTCGCTAGACCGGGGTTAAAAGGCATTACCGAACATATCAGAACATTTCACAT
1 AAACCCATATCCGTCACTAGACCGGGGTTAAAAGGCATTACCGAACATATCAGAACATTTCACAT
* *
81782110 TCATTTTACAAACATCATAGTATCATAGTCACCCC
66 TCATTTCACAAACATCATAGCATCATAGTCACCCC
* *
81782145 AAACCCATATCTGTCACTAGACCGGGGTTAAAAGGCATTACCGGACATATCAGAACATTTCACAT
1 AAACCCATATCCGTCACTAGACCGGGGTTAAAAGGCATTACCGAACATATCAGAACATTTCACAT
81782210 TCATTTCACAAACATCATAGCATCATAGTCA
66 TCATTTCACAAACATCATAGCATCATAGTCA
81782241 AACATCAACA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (100 bp):
AAACCCATATCCGTCACTAGACCGGGGTTAAAAGGCATTACCGAACATATCAGAACATTTCACAT
TCATTTCACAAACATCATAGCATCATAGTCACCCC
Found at i:81784383 original size:61 final size:61
Alignment explanation
Indices: 81784285--81784403 Score: 211
Period size: 61 Copynumber: 2.0 Consensus size: 61
81784275 CAAAACATAG
* * *
81784285 TAATCTAACACATATCTTTCATTTACTATCATCTAACTTCATAAAACTCACATTATCACAT
1 TAATCTAAAACATATATTTCATTTACTATCATATAACTTCATAAAACTCACATTATCACAT
81784346 TAATCTAAAACATATATTTCATTTACTATCATATAACTTCATAAAACTCACATTATCA
1 TAATCTAAAACATATATTTCATTTACTATCATATAACTTCATAAAACTCACATTATCA
81784404 ACAATGGAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.40, C:0.22, G:0.00, T:0.38
Consensus pattern (61 bp):
TAATCTAAAACATATATTTCATTTACTATCATATAACTTCATAAAACTCACATTATCACAT
Found at i:81789566 original size:42 final size:42
Alignment explanation
Indices: 81789476--81789627 Score: 139
Period size: 42 Copynumber: 3.5 Consensus size: 42
81789466 GTCTTAGATG
* *
81789476 TGGTCTTACATGTAATCAAGTATCGATGCCACTGTCCCAAACA
1 TGGTCTTACATGAAATCAAATAT-GATGCCACTGTCCCAAACA
* * *
81789519 GGGTCTGACATGAAATCAAATATGATGCCGA-TGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATGATGCC-ACTGTCCCAAACA
* * *
81789561 TGGTCTTACATGTAAATCTCAAA-ATGATGCCAAC-ATCCCAAGCG
1 TGGTCTTACATG-AAA--TCAAATATGATGCC-ACTGTCCCAAACA
* *
81789605 TGGTCTTACACGAAATCACATAT
1 TGGTCTTACATGAAATCAAATAT
81789628 AGGAGGACAT
Statistics
Matches: 89, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 4 0.04
42 28 0.31
43 26 0.29
44 26 0.29
45 5 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
TGGTCTTACATGAAATCAAATATGATGCCACTGTCCCAAACA
Found at i:81789600 original size:44 final size:41
Alignment explanation
Indices: 81789476--81789627 Score: 119
Period size: 43 Copynumber: 3.6 Consensus size: 41
81789466 GTCTTAGATG
* * *
81789476 TGGTCTTACATGTAATCAAGTATCGATGCC-ACTGTCCCAAACA
1 TGGTCTTACATGAAATCAAATAT-GATGCCAAC-ATCCC-AACA
* * * **
81789519 GGGTCTGACATGAAATCAAATATGATGCCGATGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATGATGCCAACATCCCA-ACA
*
81789561 TGGTCTTACATGTAAATCTCAAA-ATGATGCCAACATCCCAAGCG
1 TGGTCTTACATG-AAA--TCAAATATGATGCCAACATCCCAA-CA
* *
81789605 TGGTCTTACACGAAATCACATAT
1 TGGTCTTACATGAAATCAAATAT
81789628 AGGAGGACAT
Statistics
Matches: 89, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
41 5 0.06
42 26 0.29
43 27 0.30
44 26 0.29
45 5 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (41 bp):
TGGTCTTACATGAAATCAAATATGATGCCAACATCCCAACA
Found at i:81791950 original size:25 final size:25
Alignment explanation
Indices: 81791921--81791968 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81791911 TTATAATATG
* * *
81791921 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81791946 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81791969 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81792037 original size:20 final size:20
Alignment explanation
Indices: 81792012--81792070 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
81792002 TAAATATGGT
81792012 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
81792032 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
81792052 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81792071 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:81792052 original size:11 final size:11
Alignment explanation
Indices: 81792016--81792070 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
81792006 TATGGTATGT
81792016 ATGATATGCAC
1 ATGATATGCAC
* *
81792027 ATGAAATG--T
1 ATGATATGCAC
81792036 ATGATATGCAC
1 ATGATATGCAC
*
81792047 ATGATATG--T
1 ATGATATGCAC
81792056 ATGATATGCAC
1 ATGATATGCAC
81792067 ATGA
1 ATGA
81792071 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81792148 original size:24 final size:24
Alignment explanation
Indices: 81792121--81792262 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
81792111 GAGGAAGTGA
81792121 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
81792145 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
81792169 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
81792192 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
81792216 GAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
81792239 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81792263 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 39 0.36
24 62 0.57
25 8 0.07
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:81792214 original size:47 final size:47
Alignment explanation
Indices: 81792121--81792262 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
81792111 GAGGAAGTGA
81792121 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
81792169 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
81792216 GAAAGGGCTTTTG-CCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
81792263 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 8 0.09
47 45 0.52
48 34 0.39
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:81792259 original size:71 final size:71
Alignment explanation
Indices: 81792121--81792263 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 71
81792111 GAGGAAGTGA
*
81792121 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
81792186 AGTTAT
66 AGTTAT
** * *
81792192 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTG-CCCAGTTATTAAAAGAGGC-TAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTAGGCC-
81792255 CCAGTTAT
64 CCAGTTAT
81792263 A
1 A
81792264 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 19 0.29
71 46 0.71
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
AGTTAT
Found at i:81792538 original size:30 final size:31
Alignment explanation
Indices: 81792454--81792547 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
81792444 CGTTTACAGT
81792454 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81792485 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81792516 AAAGGCTTCGG-CCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81792546 AA
1 AA
81792548 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 20 0.32
31 42 0.68
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81800065 original size:25 final size:25
Alignment explanation
Indices: 81800036--81800083 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81800026 CTTATATATG
* * *
81800036 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81800061 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81800084 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81800164 original size:11 final size:11
Alignment explanation
Indices: 81800131--81800184 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
81800121 TATGGTATGT
81800131 ATGATATGCAC
1 ATGATATGCAC
*
81800142 ATGA-ATG--T
1 ATGATATGCAC
81800150 ATGATATGCAC
1 ATGATATGCAC
*
81800161 ATGATATG--T
1 ATGATATGCAC
81800170 ATGATATGCAC
1 ATGATATGCAC
81800181 ATGA
1 ATGA
81800185 GGTAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81800171 original size:20 final size:20
Alignment explanation
Indices: 81800126--81800184 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
81800116 ATAAATATGG
81800126 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
81800146 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
81800165 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
81800185 GGTAATCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:81800266 original size:23 final size:23
Alignment explanation
Indices: 81800236--81800351 Score: 187
Period size: 23 Copynumber: 5.0 Consensus size: 23
81800226 AGGAAGTGAA
81800236 AAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATC
81800259 AAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATC
*
81800282 AAAAGGGCTTATGCCCCAGTTATA
1 -AAAGGGCTTATGCCCCAGTTATC
*
81800306 AAAGGGCTTATGCCCCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTA-TC
*
81800330 AAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
81800352 TAAAAGAGGC
Statistics
Matches: 88, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 45 0.51
24 43 0.49
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATC
Found at i:81800291 original size:24 final size:24
Alignment explanation
Indices: 81800235--81800376 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
81800225 GAGGAAGTGA
81800235 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
81800259 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
81800282 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
81800305 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
81800329 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
81800353 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81800377 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 52 0.48
25 11 0.10
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:81800304 original size:47 final size:47
Alignment explanation
Indices: 81800235--81800376 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
81800225 GAGGAAGTGA
*
81800235 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
*
81800282 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
81800329 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
81800377 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
47 65 0.75
48 11 0.13
49 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:81800602 original size:31 final size:31
Alignment explanation
Indices: 81800567--81800630 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81800557 CGTTTACAGT
81800567 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81800598 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81800629 AA
1 AA
81800631 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81802669 original size:35 final size:35
Alignment explanation
Indices: 81802594--81802770 Score: 220
Period size: 35 Copynumber: 5.0 Consensus size: 35
81802584 CCGCACAAAG
* *
81802594 GCCTTCGGGACTTAACCCGGATATCACAATGCACAAT
1 GCCTTCGGG-CTTAGCCCGGATATCA-AATGCACATT
*
81802631 GCCTTCGGGCTTAGCCCGGATATCATATGCACATT
1 GCCTTCGGGCTTAGCCCGGATATCAAATGCACATT
81802666 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCA-AA-T-GCAC-ATT
81802705 GCCTTCGGGCTTAG-CCGGATAT---ATCGCACATT
1 GCCTTCGGGCTTAGCCCGGATATCAAAT-GCACATT
*
81802737 GCCTTCGGGCTTAGCCC-GATATCACATGCACATT
1 GCCTTCGGGCTTAGCCCGGATATCAAATGCACATT
81802771 CATACACATC
Statistics
Matches: 128, Mismatches: 4, Indels: 19
0.85 0.03 0.13
Matches are distributed among these distances:
32 22 0.17
33 8 0.06
34 8 0.06
35 35 0.27
36 16 0.12
37 10 0.08
38 12 0.09
39 17 0.13
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (35 bp):
GCCTTCGGGCTTAGCCCGGATATCAAATGCACATT
Found at i:81802688 original size:71 final size:69
Alignment explanation
Indices: 81802594--81802768 Score: 257
Period size: 71 Copynumber: 2.5 Consensus size: 69
81802584 CCGCACAAAG
*
81802594 GCCTTCGGGACTTAACCCGGATATCACAATGCACAA-TGCCTTCGGGCTTAGCCCGGATATCATA
1 GCCTTCGGG-CTTAGCCCGGATATCACAATGCACAATTGCCTTCGGGCTTAG-CCGGATAT-AT-
*
81802658 TGCACATT
62 CGCACATT
81802666 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCGGATATATCG
1 GCCTTCGGGCTTAGCCCGGATATCACAA-T-GCACAATTGCCTTCGGGCTTAGCCGGATATATCG
81802731 CACATT
64 CACATT
81802737 GCCTTCGGGCTTAGCCC-GATATCAC-ATGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACAATGCACA
81802769 TTCATACACA
Statistics
Matches: 98, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
67 5 0.05
68 1 0.01
69 1 0.01
70 8 0.08
71 42 0.43
72 12 0.12
73 14 0.14
74 15 0.15
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (69 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATGCACAATTGCCTTCGGGCTTAGCCGGATATATCGCA
CATT
Found at i:81810597 original size:40 final size:40
Alignment explanation
Indices: 81810533--81810761 Score: 207
Period size: 39 Copynumber: 5.8 Consensus size: 40
81810523 GCTACTCGTT
* * * ***
81810533 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
81810573 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
81810613 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * ** *
81810652 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAAGTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * **
81810691 CAATTGCCTTCGGG-CTTAGCCCGGATATCA-TATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
** *
81810729 CATTTGCCTTCGGG-TTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
81810762 TTTGCACATT
Statistics
Matches: 164, Mismatches: 24, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
38 33 0.20
39 86 0.52
40 45 0.27
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:81810650 original size:39 final size:39
Alignment explanation
Indices: 81810569--81810758 Score: 258
Period size: 39 Copynumber: 4.9 Consensus size: 39
81810559 TATGGTAACC
* * * *
81810569 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
81810609 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
* *
81810648 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAAG-T
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TAGCT
* *
81810687 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATA-TT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
* *
81810725 CGCACATTTGCCTTCGGGTTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
81810759 CAATTTGCAC
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 33 0.24
39 84 0.62
40 19 0.14
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:81810697 original size:78 final size:77
Alignment explanation
Indices: 81810577--81810761 Score: 291
Period size: 78 Copynumber: 2.4 Consensus size: 77
81810567 CCCGCACAAA
* *
81810577 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCCCGGATATC
81810642 ATAGCTCGCACCA-T
65 ATA-CTCGCA-CATT
*
81810656 TGCCTTCGGGCTTAGCCCGGATATCACAAGTCACACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCCCGGATATCA
*
81810721 TATTCGCACATT
66 TACTCGCACATT
*
81810733 TGCCTTCGGGTTTAGCCCGGATATCACAA
1 TGCCTTCGGGCTTAGCCCGGATATCACAA
81810762 TTTGCACATT
Statistics
Matches: 100, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
76 2 0.02
77 34 0.34
78 54 0.54
79 10 0.10
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (77 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCCCGGATATCA
TACTCGCACATT
Found at i:81814724 original size:8 final size:9
Alignment explanation
Indices: 81814701--81814738 Score: 53
Period size: 8 Copynumber: 4.4 Consensus size: 9
81814691 TGAAAAATGA
81814701 AATTTTGTG
1 AATTTTGTG
*
81814710 TATTTTGT-
1 AATTTTGTG
81814718 AATTTTGTG
1 AATTTTGTG
81814727 AA-TTTGTG
1 AATTTTGTG
81814735 AATT
1 AATT
81814739 AGGGACTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
8 15 0.60
9 10 0.40
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (9 bp):
AATTTTGTG
Found at i:81814850 original size:15 final size:17
Alignment explanation
Indices: 81814812--81814851 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
81814802 TTATGGATTG
*
81814812 ATTTGAATGAATGTGAA
1 ATTTGAATGAATGTCAA
81814829 A-TTGAAT-AA-GTCAA
1 ATTTGAATGAATGTCAA
81814843 ATTTGAATG
1 ATTTGAATG
81814852 CGTTTAGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 6 0.30
17 1 0.05
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (17 bp):
ATTTGAATGAATGTCAA
Found at i:81815207 original size:44 final size:44
Alignment explanation
Indices: 81815141--81815234 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
81815131 TATGTGATTT
* * *
81815141 CGTGTAAGACCACGTTTGGGACGTTGGCATCGACTTATGATATA
1 CGTGTAAGACAACGTCTAGGACGTTGGCATCGACTTATGATATA
*
81815185 CGTGTAAGACAACGTCTAGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACAACGTCTAGGACGTTGGCATCGACTTATGATATA
*
81815229 CATGTA
1 CGTGTA
81815235 TGACCATGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACAACGTCTAGGACGTTGGCATCGACTTATGATATA
Found at i:81815260 original size:44 final size:44
Alignment explanation
Indices: 81815135--81815293 Score: 128
Period size: 44 Copynumber: 3.7 Consensus size: 44
81815125 TTTTGATATG
* * * * * *
81815135 TGATTT-CGTGTAAGACCACGTTTGGGACGTTGGCATCGACTTA
1 TGATTTACATGTAAGACCATGTCTGGGACATCGACATCGACTTA
* * * * * * * *
81815178 TGATATACGTGTAAGACAACGTCTAGGACGTTGGCATCGACTTA
1 TGATTTACATGTAAGACCATGTCTGGGACATCGACATCGACTTA
*
81815222 TGATTTACATGTATGACCATGTCTGGGACATCGACATCGTA-TT-
1 TGATTTACATGTAAGACCATGTCTGGGACATCGACATCG-ACTTA
* *
81815265 TGATTT-CATGTAAGACCCTGTATGGGACA
1 TGATTTACATGTAAGACCATGTCTGGGACA
81815294 GTGGCATTGA
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
42 20 0.20
43 11 0.11
44 66 0.67
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (44 bp):
TGATTTACATGTAAGACCATGTCTGGGACATCGACATCGACTTA
Found at i:81815291 original size:42 final size:43
Alignment explanation
Indices: 81815222--81815325 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
81815212 CATCGACTTA
* *
81815222 TGATTTACATGTATGACCATGTCTGGGACA-TCGACATCG-TATT
1 TGATTT-CATGTAAGACCATGTATGGGACAGT-GACATCGATATT
* * *
81815265 TGATTTCATGTAAGACCCTGTATGGGACAGTGGCATTGATATT
1 TGATTTCATGTAAGACCATGTATGGGACAGTGACATCGATATT
* *
81815308 TTATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
81815326 CATTTGGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 25 0.49
43 26 0.51
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTATGGGACAGTGACATCGATATT
Found at i:81815308 original size:43 final size:40
Alignment explanation
Indices: 81815222--81815348 Score: 112
Period size: 43 Copynumber: 3.0 Consensus size: 40
81815212 CATCGACTTA
* * * *
81815222 TGATTTACATGTATGACCATGTCTGGGACATCGACATCGTATT
1 TGATTT-CATGTAAGACCCTGT-TGGGACAT-GGCATTGTATT
81815265 TGATTTCATGTAAGACCCTGTATGGGACAGTGGCATTGATATT
1 TGATTTCATGTAAGACCCTGT-TGGGACA-TGGCATTG-TATT
* *
81815308 TTATTACATGTAAGACCACAT-TTGGGACATTGGCATTGTAT
1 TGATTTCATGTAAGACC-C-TGTTGGGACA-TGGCATTGTAT
81815349 GAGCTTTTCG
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 28 0.39
43 41 0.57
44 2 0.03
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (40 bp):
TGATTTCATGTAAGACCCTGTTGGGACATGGCATTGTATT
Found at i:81819274 original size:38 final size:38
Alignment explanation
Indices: 81819203--81819398 Score: 236
Period size: 38 Copynumber: 5.1 Consensus size: 38
81819193 ATTTGATGTG
* *
81819203 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
81819243 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
81819281 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* * *
81819319 TATCCGGGTTAAATCTCGCAGGCTTTGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
81819357 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
81819395 TATC
1 TATC
81819399 TGAGCTTAAA
Statistics
Matches: 141, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
37 2 0.01
38 124 0.88
39 7 0.05
40 8 0.06
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:81819312 original size:76 final size:75
Alignment explanation
Indices: 81819219--81819429 Score: 246
Period size: 76 Copynumber: 2.8 Consensus size: 75
81819209 GGCTTAAAGA
* *
81819219 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATAT
1 CCCGCAGGCT-TGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAT
81819284 CCAGGTTAAAT
65 CCAGGTTAAAT
* * *
81819295 CCCGCAGGCTTCGTGCTGGTAA-TATATCCGGGTTAAATCTCGCAGGCTTTGTGCTGGTATTATA
1 CCCGCAGGCTT-GTGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
*
81819359 TCCGGGTTAAAT
64 TCCAGGTTAAAT
* * * * * *
81819371 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGCTTAAAGCCCCGCAGG-TTTGTGCTGGT
1 CCCGCAGG-CTTGTGCTGGAATTATATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
81819430 GACTAGATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
75 2 0.02
76 87 0.74
77 21 0.18
78 7 0.06
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (75 bp):
CCCGCAGGCTTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATC
CAGGTTAAAT
Found at i:81820041 original size:16 final size:18
Alignment explanation
Indices: 81820010--81820042 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
81820000 AGTTCATCAC
81820010 ACTATTGATCATTTTGGT
1 ACTATTGATCATTTTGGT
81820028 ACTATT-AT-ATTTTGG
1 ACTATTGATCATTTTGG
81820043 AGTTGTGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (18 bp):
ACTATTGATCATTTTGGT
Found at i:81825476 original size:21 final size:21
Alignment explanation
Indices: 81825444--81825486 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
81825434 ACCAAGAGTT
*
81825444 AAAAGGAGCAAAAAAGAGCAA
1 AAAAGGAGCAAAAAAGACCAA
*
81825465 AAAAGGCA-CAAAACAGACCAA
1 AAAAGG-AGCAAAAAAGACCAA
81825486 A
1 A
81825487 TCGAGAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.65, C:0.16, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAAGGAGCAAAAAAGACCAA
Found at i:81827428 original size:19 final size:20
Alignment explanation
Indices: 81827404--81827441 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81827394 GGTACCACCA
81827404 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81827423 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81827442 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81827781 original size:93 final size:93
Alignment explanation
Indices: 81827671--81827841 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81827661 GCCCCTAAGT
* *
81827671 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81827736 CGAATTCGGATGCCTAGTTACATCTCAC
66 CGAATTCGGATGCCTAGTTACATCTCAC
* * *
81827764 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
81827829 CGAGTTCGGATGC
66 CGAATTCGGATGC
81827842 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAATTCGGATGCCTAGTTACATCTCAC
Found at i:81827838 original size:46 final size:46
Alignment explanation
Indices: 81827666--81827838 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
81827656 AACCCGCCCC
* * * *
81827666 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
81827712 TAAATGAACTCGGACTCAACTCAACGAATTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
81827760 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81827805 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81827839 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81828293 original size:30 final size:30
Alignment explanation
Indices: 81828259--81828319 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81828249 CATTTAATAC
81828259 AAACTTTAAAAAAATTACACTTTTGCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
*** * *
81828289 AAACTTTTGCATAATTACAGTTTTGCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
81828319 A
1 A
81828320 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (30 bp):
AAACTTTAAAAAAATTACACTTTTGCCCCT
Found at i:81833611 original size:40 final size:39
Alignment explanation
Indices: 81833555--81833825 Score: 310
Period size: 40 Copynumber: 6.8 Consensus size: 39
81833545 CGGATGATAA
* ** * *
81833555 CCGGGCTAAGTTCCGAAGGCATTTGCACTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
81833595 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
81833635 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* * * *
81833675 CCGAGCTAAGTCCCGAAGGCATTTGTCCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
81833715 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* * *
81833755 CCGGGCTAAGTCCCGATGGCATTGGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* * *
81833795 CCGAGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81833826 AGCTATATCC
Statistics
Matches: 197, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
39 7 0.04
40 190 0.96
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:81833688 original size:80 final size:80
Alignment explanation
Indices: 81833555--81833837 Score: 374
Period size: 80 Copynumber: 3.5 Consensus size: 80
81833545 CGGATGATAA
* ** * *
81833555 CCGGGCTAAGTTCCGAAGGCATTTGCACTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
81833619 GTGCGAGTTATTACAT
65 GTGCGAGTTATTACAT
* *
81833635 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
81833700 TCCGAGTTATTACAT
66 TGCGAGTTATTACAT
* * *
81833715 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGATGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
81833780 TGTGAGTTACTATAT
66 TGCGAGTTATTACAT
* * *
81833795 CCGAGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
81833838 TTAAATTCCG
Statistics
Matches: 181, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
78 2 0.01
79 19 0.10
80 160 0.88
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTATTACAT
Found at i:81833776 original size:120 final size:120
Alignment explanation
Indices: 81833559--81833817 Score: 376
Period size: 120 Copynumber: 2.2 Consensus size: 120
81833549 TGATAACCGG
* * **
81833559 GCTAAGTTCCGAAGGCATTTGCACTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGCACGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
* * *
81833624 AGTTATTACATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGA
66 AGCTACTACATCCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATATCCGA
* *
81833679 GCTAAGTCCCGAAGGCATTTGTC-CGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATTTG-CACGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* * * *
81833743 GAGCTACTATATCCGGGCTAAGTCCCGATGGCATTGGTGTGAGTTACTATATCCGA
65 GAGCTACTACATCCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATATCCGA
*
81833799 GCTATGTCCCGAAGGCATT
1 GCTAAGTCCCGAAGGCATT
81833818 GAGCGAGTAG
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
120 123 0.99
121 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (120 bp):
GCTAAGTCCCGAAGGCATTTGCACGAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGCTACTACATCCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATATCCGA
Found at i:81847980 original size:47 final size:47
Alignment explanation
Indices: 81847929--81848167 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
81847919 TTAGGATTTT
*
81847929 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
81847976 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
81848023 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
81848070 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
81848117 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
81848162 ATGTGA
1 ATGTGA
81848168 AATATATATA
Statistics
Matches: 180, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 25 0.14
47 155 0.86
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81848076 original size:22 final size:22
Alignment explanation
Indices: 81847954--81848076 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
81847944 ACATGCATAT
*
81847954 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGTCGAATGGCCA
* *
81847976 ATGTGATGAATGT-GAGCAT-GCATA
1 ATGTGAT-AAGGTCGA--ATGGC-CA
*
81848000 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGTCGAATGGCCA
* *
81848023 ATGTGATGAATGT-GAGCAT-GCATA
1 ATGTGAT-AAGGTCGA--ATGGC-CA
81848047 TATGTGATAAGGTCGAATGGCCA
1 -ATGTGATAAGGTCGAATGGCCA
81848070 ATGTGAT
1 ATGTGAT
81848077 GAATGTGAGC
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 25 0.33
23 16 0.21
24 17 0.22
25 18 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGTCGAATGGCCA
Found at i:81848199 original size:50 final size:50
Alignment explanation
Indices: 81848126--81848272 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
81848116 AATGTGGTGA
*
81848126 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
*
81848175 ATATGAGATATGCATATGTGGTAAAGCCGAGTGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* * *
81848225 ATATGAGATATGTATATGTGGTAAAGCTGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
81848273 GTAGGCGATG
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 7 0.08
50 83 0.92
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:81848530 original size:37 final size:37
Alignment explanation
Indices: 81848422--81848530 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
81848412 GGAAATATAT
* *
81848422 TCCGGGTATGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
81848459 TCCGGGTAAGACCCGATGACTACGTGTTGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81848496 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81848531 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:81850160 original size:40 final size:40
Alignment explanation
Indices: 81849798--81850148 Score: 506
Period size: 40 Copynumber: 8.8 Consensus size: 40
81849788 GAGAATTGAG
* *
81849798 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCTTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81849838 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81849878 AGTGATGTATCCAGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
81849918 AGTGATGTATCCGAGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81849958 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
81849998 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
81850038 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
81850078 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
81850117 GGTGTTATCTCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
81850149 ATCATGCTGG
Statistics
Matches: 278, Mismatches: 32, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 32 0.12
40 246 0.88
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:81852638 original size:28 final size:27
Alignment explanation
Indices: 81852575--81852644 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
81852565 ATAGTGAGTC
81852575 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
81852602 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
81852630 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81852645 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:81860571 original size:28 final size:27
Alignment explanation
Indices: 81860508--81860577 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
81860498 ATAGTGAGTC
81860508 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
81860535 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
81860563 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81860578 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:81864894 original size:47 final size:47
Alignment explanation
Indices: 81864843--81865034 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
81864833 TTAGGATTTT
81864843 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
81864890 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
81864937 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
81864984 ATGTGGTGAATATGAACATGCATATATG-G-TAAAGTCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
81865029 ATGTGA
1 ATGTGA
81865035 AATATATATA
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
45 17 0.13
46 1 0.01
47 115 0.86
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81864896 original size:22 final size:22
Alignment explanation
Indices: 81864868--81864943 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
81864858 ACATGCATAT
81864868 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
81864890 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
81864914 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
81864937 ATGTGAT
1 ATGTGAT
81864944 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:81865064 original size:50 final size:50
Alignment explanation
Indices: 81864993--81865139 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
81864983 AATGTGGTGA
* * *
81864993 ATATGA-ACATGCATATATGGTAAAGTCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
81865042 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
81865092 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
81865140 GTAGGCGATG
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
49 7 0.08
50 84 0.92
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:81865339 original size:37 final size:37
Alignment explanation
Indices: 81865289--81865396 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
81865279 GGAAATATAT
81865289 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
81865326 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
81865363 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
81865397 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:81873257 original size:27 final size:28
Alignment explanation
Indices: 81873211--81873264 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
81873201 TACCTAGACC
81873211 CCCTATATATGATAAAATGACTATTTTT
1 CCCTATATATGATAAAATGACTATTTTT
* * *
81873239 CCCT-TATATGGTAAGATGACTGTTTT
1 CCCTATATATGATAAAATGACTATTTT
81873265 GCCCCTATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.43
Consensus pattern (28 bp):
CCCTATATATGATAAAATGACTATTTTT
Found at i:81882153 original size:48 final size:49
Alignment explanation
Indices: 81882070--81882203 Score: 175
Period size: 48 Copynumber: 2.8 Consensus size: 49
81882060 CCACCATTTA
* *
81882070 TGGACAAGCCACCACTGATTTGCAGATAAACTGCCACTAATAATACATTG
1 TGGACAAGCCACCACT-ATTTGCAGATAAACTGCCACTAAAAACACATTG
* * *
81882120 TGGACAAGCCACCAC-ATATGCAGATATACTGCCAC-AAAAACACTTTG
1 TGGACAAGCCACCACTATTTGCAGATAAACTGCCACTAAAAACACATTG
*
81882167 TGGA-AAGCCACCACTAATTTGAAGATAAACTGCCACT
1 TGGACAAGCCACCACT-ATTTGCAGATAAACTGCCACT
81882204 TACTTCCTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
46 10 0.14
47 13 0.18
48 35 0.48
50 15 0.21
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (49 bp):
TGGACAAGCCACCACTATTTGCAGATAAACTGCCACTAAAAACACATTG
Found at i:81884268 original size:79 final size:82
Alignment explanation
Indices: 81884128--81884312 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
81884118 TCGAATGATG
* * *
81884128 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
81884192 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
81884208 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
81884270 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
81884288 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81884313 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:81884320 original size:40 final size:40
Alignment explanation
Indices: 81884129--81884320 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
81884119 CGAATGATGT
* * * * *
81884129 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
81884169 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
81884209 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
81884248 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
81884288 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
81884321 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:81884343 original size:79 final size:79
Alignment explanation
Indices: 81884128--81884345 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
81884118 TCGAATGATG
* * * * ** *
81884128 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
81884191 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
81884208 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
81884273 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
81884288 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
81884346 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:81888749 original size:41 final size:41
Alignment explanation
Indices: 81888687--81888771 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
81888677 GCACATATAG
*
81888687 CATATTTTCTCATATCATCACTTGCACATATGCTTACTTCT
1 CATACTTTCTCATATCATCACTTGCACATATGCTTACTTCT
81888728 CATACTTTCTCATATCATCACTTGCACATATGCTTACTTCT
1 CATACTTTCTCATATCATCACTTGCACATATGCTTACTTCT
81888769 CAT
1 CAT
81888772 TAACAAATGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.28, G:0.05, T:0.42
Consensus pattern (41 bp):
CATACTTTCTCATATCATCACTTGCACATATGCTTACTTCT
Found at i:81891436 original size:15 final size:15
Alignment explanation
Indices: 81891413--81891443 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81891403 TCAAAAATTA
81891413 CAATACAAAACATAT
1 CAATACAAAACATAT
*
81891428 CAATCCAAAACATAT
1 CAATACAAAACATAT
81891443 C
1 C
81891444 TTCCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:81897158 original size:43 final size:44
Alignment explanation
Indices: 81897092--81897257 Score: 184
Period size: 43 Copynumber: 3.9 Consensus size: 44
81897082 TCGTACAATA
* * *
81897092 CCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATGGATG
1 CCAACTGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATG
*
81897135 CC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CGATG
1 CCAACTGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATG
* * * *
81897177 CCGA-TGTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATG
1 CCAACTGTCCCAGACGTGGTCTTACAC-GAAATC-AAATATCGATG
81897221 CCAAC-GTCCCAGACGTGGTCTTACACGAAATCAAATA
1 CCAACTGTCCCAGACGTGGTCTTACACGAAATCAAATA
81897258 GCAAAAATTC
Statistics
Matches: 104, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 29 0.28
43 44 0.42
44 31 0.30
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (44 bp):
CCAACTGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATG
Found at i:81897233 original size:44 final size:44
Alignment explanation
Indices: 81897092--81897246 Score: 144
Period size: 44 Copynumber: 3.6 Consensus size: 44
81897082 TCGTACAATA
* ** * *
81897092 CCAACGTCCCAGACGTGGTCTTACATGT-AATC-AAATATGGATG
1 CCAACGTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATG
*
81897135 CC-ACTGTCCCAGACAGGGTCTT--ACATGAAA--TCAAATACGATG
1 CCAAC-GTCCCAGACATGGTCTTACACAT-AAATCTCAAAT-CGATG
* *
81897177 CCGATGTCCCAGACATGGTCTTACACATAAATCTCAAATCGATG
1 CCAACGTCCCAGACATGGTCTTACACATAAATCTCAAATCGATG
*
81897221 CCAACGTCCCAGACGTGGTCTTACAC
1 CCAACGTCCCAGACATGGTCTTACAC
81897247 GAAATCAAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
41 4 0.04
42 26 0.29
43 23 0.25
44 32 0.35
45 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
CCAACGTCCCAGACATGGTCTTACACATAAATCTCAAATCGATG
Found at i:81897241 original size:86 final size:85
Alignment explanation
Indices: 81897097--81897257 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
81897087 CAATACCAAC
* ** * *
81897097 GTCCCAGACGTGGTCTTACATGTAATCAAATATGGATGCCACTGTCCCAGACAGGGTCTTACATG
1 GTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG
81897162 AAATCAAATACGATGCCGAT
66 AAATCAAATACGATGCCGAT
*
81897182 GTCCCAGACATGGTCTTACACATAAATCTCAA-ATCGATGCCAAC-GTCCCAGAC-GTGGTCTTA
1 GTCCCAGACATGGTCTTACACAT-AATC-AAATATCGATGCC-ACTGTCCCAGACAG-GGTCTTA
81897244 CACGAAATCAAATA
62 CACGAAATCAAATA
81897258 GCAAAAATTC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
85 21 0.32
86 41 0.62
87 4 0.06
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG
AAATCAAATACGATGCCGAT
Found at i:81904575 original size:15 final size:17
Alignment explanation
Indices: 81904549--81904582 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81904539 TATATAATTA
81904549 TTTATCATCTTT-TAAT
1 TTTATCATCTTTCTAAT
81904565 TTTATCA-CTTTCTAAT
1 TTTATCATCTTTCTAAT
81904581 TT
1 TT
81904583 AGTCTTTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATCATCTTTCTAAT
Found at i:81911796 original size:27 final size:26
Alignment explanation
Indices: 81911748--81911799 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81911738 GCGAGACTGC
* *
81911748 CAGATATTGTGACGAGGTCACCAGAA
1 CAGATATTGTGACAAGGCCACCAGAA
*
81911774 CAGATATATGTGGCAAGGCCACCAGA
1 CAGATAT-TGTGACAAGGCCACCAGA
81911800 TTGTAGGGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACAAGGCCACCAGAA
Found at i:81912952 original size:25 final size:25
Alignment explanation
Indices: 81912924--81912975 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
81912914 TGTCATAAAC
81912924 CCAACACATTAAACTTTAAAGCGCA
1 CCAACACATTAAACTTTAAAGCGCA
81912949 CCAACACATTAAACTTTAAAGCGCA
1 CCAACACATTAAACTTTAAAGCGCA
81912974 CC
1 CC
81912976 TACTTGCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (25 bp):
CCAACACATTAAACTTTAAAGCGCA
Found at i:81919174 original size:27 final size:27
Alignment explanation
Indices: 81919126--81919214 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
81919116 GCGAGGCTGC
*
81919126 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
81919153 CAGATATTGTGGCTAGGCCACCAGACTAGA
1 CAGATATTGTGACGAAGCCACCAGA-T--A
* * *
81919183 TATATATATGTGGCGAAGCCACCAGATTA
1 CAGATAT-TGTGACGAAGCCACCAGA-TA
81919212 CAG
1 CAG
81919215 CGAGGCTGCC
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
27 21 0.45
28 1 0.02
29 2 0.04
30 6 0.13
31 17 0.36
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:81919260 original size:26 final size:26
Alignment explanation
Indices: 81919224--81919274 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
81919214 GCGAGGCTGC
*
81919224 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81919250 CAGATATTGTGGCGAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
81919275 TTGCACCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81923612 original size:28 final size:28
Alignment explanation
Indices: 81923581--81923679 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
81923571 AATATGGTAC
81923581 TAGTGTACGAAATATTGAGAATGGCACT
1 TAGTGTACGAAATATTGAGAATGGCACT
81923609 TAGTGTACGAAATATTGAGAATGGCACT
1 TAGTGTACGAAATATTGAGAATGGCACT
* *
81923637 TAGTGTACGAGATATTGAGAATGACACT
1 TAGTGTACGAAATATTGAGAATGGCACT
* *
81923665 TAGTGTGCAAAATAT
1 TAGTGTACGAAATAT
81923680 CGAATGATTC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
TAGTGTACGAAATATTGAGAATGGCACT
Found at i:81923613 original size:56 final size:56
Alignment explanation
Indices: 81923546--81923672 Score: 139
Period size: 56 Copynumber: 2.3 Consensus size: 56
81923536 CGACAAAATG
*** *
81923546 TGGCACTTAGTGTGCGGGGCAATCAAATATGGTAC-TAGTGTACGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAAACAATCAAA-ATGGCACTTAGTGTACGAAATATTGAGAA
* * * * * *
81923602 TGGCACTTAGTGTACGAAATATTGAGAATGGCACTTAGTGTACGAGATATTGAGAA
1 TGGCACTTAGTGTGCGAAACAATCAAAATGGCACTTAGTGTACGAAATATTGAGAA
*
81923658 TGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
81923673 AAAATATCGA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
55 6 0.10
56 52 0.90
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAACAATCAAAATGGCACTTAGTGTACGAAATATTGAGAA
Found at i:81925687 original size:28 final size:28
Alignment explanation
Indices: 81925656--81925810 Score: 139
Period size: 28 Copynumber: 5.5 Consensus size: 28
81925646 GTGAACATAG
**
81925656 GCACTGTGTGTATGAGTTCCGTAATCGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* * ** **
81925684 GCACTGTGTGTGCGAGATCGGTTGTTAA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* *
81925712 GGCACTGTGTGTGCGAGTTCCGGAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAATCGA
* * ** *
81925741 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAATCGA
* *
81925769 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAATCGA
81925798 GCACTGTGTGTGC
1 GCACTGTGTGTGC
81925811 AAGATCGGTT
Statistics
Matches: 95, Mismatches: 30, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
28 54 0.57
29 41 0.43
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAATCGA
Found at i:81925722 original size:29 final size:29
Alignment explanation
Indices: 81925684--81925823 Score: 128
Period size: 29 Copynumber: 4.9 Consensus size: 29
81925674 CCGTAATCGA
81925684 GCACTGTGTGTGCGAGATCGGTTGTTAAG
1 GCACTGTGTGTGCGAGATCGGTTGTTAAG
* *
81925713 GCACTGTGTGTGCGAGTTCCG--G--AACCG
1 GCACTGTGTGTGCGAGATCGGTTGTTAA--G
*
81925740 AGCACTGTGTGTGCGAGATCGGTTGTTGAG
1 -GCACTGTGTGTGCGAGATCGGTTGTTAAG
* * ****
81925770 GCACTGTGTGTGCGAGTTCCGTAACCAA-
1 GCACTGTGTGTGCGAGATCGGTTGTTAAG
*
81925798 GCACTGTGTGTGCAAGATCGGTTGTT
1 GCACTGTGTGTGCGAGATCGGTTGTT
81925824 GGGGCACTAA
Statistics
Matches: 85, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
25 2 0.02
27 2 0.02
28 38 0.45
29 40 0.47
30 2 0.02
32 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTAAG
Found at i:81925824 original size:57 final size:57
Alignment explanation
Indices: 81925654--81925840 Score: 284
Period size: 57 Copynumber: 3.2 Consensus size: 57
81925644 AAGTGAACAT
** * *
81925654 AGGCACTGTGTGTATGAGTTCCGTAATCGAGCACTGTGTGTGCGAGATCGGTTGTTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
81925711 AGGCACTGTGTGTGCGAGTTCCGGAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81925768 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
81925825 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
81925841 AAATGAGATC
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
57 112 0.94
59 7 0.06
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:81930065 original size:31 final size:29
Alignment explanation
Indices: 81929979--81930110 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
81929969 GTGACGAGAT
81929979 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81930008 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * *
81930037 TGGCACTAAAAGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
81930066 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
81930095 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
81930111 GGCTTAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81932939 original size:38 final size:39
Alignment explanation
Indices: 81932887--81933029 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
81932877 GAATGTTCGA
81932887 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
81932926 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
81932964 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
81933003 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
81933030 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:81932975 original size:77 final size:79
Alignment explanation
Indices: 81932888--81933069 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
81932878 AATGTTCGAG
81932888 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
81932951 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
81932965 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
81933030 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
81933044 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
81933070 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:81940957 original size:38 final size:39
Alignment explanation
Indices: 81940905--81941047 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
81940895 GAATGTTCGA
81940905 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
81940944 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
81940982 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
81941021 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
81941048 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:81940993 original size:77 final size:79
Alignment explanation
Indices: 81940906--81941087 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
81940896 AATGTTCGAG
81940906 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
81940969 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
81940983 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
81941048 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
81941062 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
81941088 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Done.