Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 275 of 345
Found at i:81946849 original size:23 final size:23
Alignment explanation
Indices: 81946823--81946878 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
81946813 TCAGCTCGTA
81946823 AGAGCTTACTGATTCAGATC-AT
1 AGAGCTTACTGATTCAGATCAAT
* * *
81946845 CAGAGCTTATTGCTTCAGCTCAAT
1 -AGAGCTTACTGATTCAGATCAAT
81946869 AGAGCTTACT
1 AGAGCTTACT
81946879 ATCTATCAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 26 0.93
24 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (23 bp):
AGAGCTTACTGATTCAGATCAAT
Found at i:81949474 original size:46 final size:45
Alignment explanation
Indices: 81949358--81949474 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 45
81949348 GAGTGTTGGA
81949358 GTAAGACATGTCTTGGACATGCATCGGCCTTAAGACGTAAGTCAGT
1 GTAAGACATGTCTTGGACATGCATCGGCCTTAAGACGT-AGTCAGT
* *
81949404 GTAAGACATGT-TTGGGACATGCATCGG-CTATGAGATGT-GTCAGT
1 GTAAGACATGTCTT-GGACATGCATCGGCCT-TAAGACGTAGTCAGT
*
81949448 GTAAGGCCATGTCTTGGACATGGCATC
1 GTAA-GACATGTCTTGGACAT-GCATC
81949475 AGCACAGATA
Statistics
Matches: 63, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
44 10 0.16
45 16 0.25
46 37 0.59
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (45 bp):
GTAAGACATGTCTTGGACATGCATCGGCCTTAAGACGTAGTCAGT
Found at i:81957854 original size:21 final size:21
Alignment explanation
Indices: 81957830--81957871 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
81957820 TCATCAGATC
*
81957830 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
81957851 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
81957872 AGGTCGCGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:81966833 original size:30 final size:30
Alignment explanation
Indices: 81966775--81966833 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
81966765 ATTTTTGAGA
* **
81966775 CTAGGGGTAAAATAGTCATTTTGTCAAAGT
1 CTAGGGGAAAAATAGTCATTTTACCAAAGT
*
81966805 CTAGGGGAAAAATGGTCATTTTACCAAAG
1 CTAGGGGAAAAATAGTCATTTTACCAAAG
81966834 ATATAAACTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATAGTCATTTTACCAAAGT
Found at i:81967388 original size:46 final size:44
Alignment explanation
Indices: 81967270--81967389 Score: 111
Period size: 46 Copynumber: 2.6 Consensus size: 44
81967260 GAGTGCTGGA
* *
81967270 GTAAGACATGTCTAGGACATGCATCGGCCT-CGAGACGTAAGTCAGT
1 GTAAGACATGTCTAGGACATGCATCGG-CTACGAGATGT--GTTAGT
* * *
81967316 GCAAGACACGTCT-GAGACATGAATCGGCTAC-AGGATGTGTTAGT
1 GTAAGACATGTCTAG-GACATGCATCGGCTACGA-GATGTGTTAGT
81967360 GTAAGACCATGTCTAGGACATGGCATCGGC
1 GTAAGA-CATGTCTAGGACAT-GCATCGGC
81967390 ACCTTACCCC
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
44 10 0.17
45 15 0.25
46 35 0.58
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (44 bp):
GTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGTTAGT
Found at i:81968238 original size:30 final size:30
Alignment explanation
Indices: 81968202--81968269 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
81968192 ACGGACAAAG
81968202 ACACGGCCATGTGTCTCAGCCGTGTGATAA
1 ACACGGCCATGTGTCTCAGCCGTGTGATAA
*
81968232 ACACGGCCGTGTGTCTCAGCCGTGTGATAA
1 ACACGGCCATGTGTCTCAGCCGTGTGATAA
81968262 ACACGGCC
1 ACACGGCC
81968270 TAGCACATGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (30 bp):
ACACGGCCATGTGTCTCAGCCGTGTGATAA
Found at i:81968242 original size:17 final size:17
Alignment explanation
Indices: 81968220--81968269 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
81968210 ATGTGTCTCA
81968220 GCCGTGTGATAAACACG
1 GCCGTGTGATAAACACG
* *
81968237 GCCGTGTG-T---CTCA
1 GCCGTGTGATAAACACG
81968250 GCCGTGTGATAAACACG
1 GCCGTGTGATAAACACG
81968267 GCC
1 GCC
81968270 TAGCACATGG
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
16 1 0.04
17 13 0.52
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (17 bp):
GCCGTGTGATAAACACG
Found at i:81970465 original size:25 final size:25
Alignment explanation
Indices: 81970431--81970479 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
81970421 CTCGTGAATA
81970431 TGTTTCTTCTGAAGCTATAATGTGG
1 TGTTTCTTCTGAAGCTATAATGTGG
81970456 TGTTTCTTCTGAAGCTATAATGTG
1 TGTTTCTTCTGAAGCTATAATGTG
81970480 TAAAAGGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.12, G:0.22, T:0.45
Consensus pattern (25 bp):
TGTTTCTTCTGAAGCTATAATGTGG
Found at i:81976791 original size:17 final size:18
Alignment explanation
Indices: 81976752--81976794 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
81976742 AAATCTGAAT
81976752 ATATTT-TTTTATGCATTA
1 ATATTTGTTTTAT-CATTA
81976770 A-ATTTGTTTTAT-ATTA
1 ATATTTGTTTTATCATTA
81976786 ATATTTGTT
1 ATATTTGTT
81976795 ATTAATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.22
17 11 0.48
18 7 0.30
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (18 bp):
ATATTTGTTTTATCATTA
Found at i:81978309 original size:12 final size:12
Alignment explanation
Indices: 81978292--81978337 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
81978282 TATACAAGTT
81978292 AAAAAAATTTGA
1 AAAAAAATTTGA
*
81978304 AAAAAAATTCGA
1 AAAAAAATTTGA
* *
81978316 AAAAAACTCTGA
1 AAAAAAATTTGA
81978328 AATAAAAATT
1 AA-AAAAATT
81978338 GAAGTGAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.22
Consensus pattern (12 bp):
AAAAAAATTTGA
Found at i:81979286 original size:6 final size:5
Alignment explanation
Indices: 81979261--81979318 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
81979251 AACGATAAAC
*
81979261 AAAAG AAAAG AAAAG AAAAAG CAAAAG AAGA- AAAAG AAAACG AAATA-
1 AAAAG AAAAG AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAA-G AAA-AG
81979308 AAAAG AAAAG A
1 AAAAG AAAAG A
81979319 GAGACAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 14 0.31
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:81979295 original size:16 final size:16
Alignment explanation
Indices: 81979261--81979345 Score: 70
Period size: 16 Copynumber: 5.2 Consensus size: 16
81979251 AACGATAAAC
*
81979261 AAAAGAAAAGAAAAGA
1 AAAAGAAAAGAAGAGA
81979277 AAAAGCAAAAG-A-AGA
1 AAAAG-AAAAGAAGAGA
*
81979292 AAAAGAAAACGAA-ATA
1 AAAAGAAAA-GAAGAGA
81979308 AAAAGAAAAG-AGAGA
1 AAAAGAAAAGAAGAGA
*
81979323 CAAAAGGAAAGTAAGAGA
1 -AAAAGAAAAG-AAGAGA
81979341 GAAAA
1 -AAAA
81979346 TGAGCGAATC
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
14 5 0.09
15 12 0.21
16 27 0.47
17 5 0.09
18 9 0.16
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (16 bp):
AAAAGAAAAGAAGAGA
Found at i:81979299 original size:31 final size:31
Alignment explanation
Indices: 81979259--81979338 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 31
81979249 GTAACGATAA
81979259 ACAAAAGAAAAGAAAAGAAAAAGCAAAAGA-AG
1 ACAAAAGAAAAG-AAAGAAAAAG-AAAAGAGAG
*
81979291 A-AAAAGAAAACGAAATAAAAAGAAAAGAGAG
1 ACAAAAGAAAA-GAAAGAAAAAGAAAAGAGAG
* *
81979322 ACAAAAGGAAAGTAAGA
1 ACAAAAGAAAAGAAAGA
81979339 GAGAAAATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
30 6 0.15
31 25 0.61
32 10 0.24
ACGTcount: A:0.72, C:0.05, G:0.20, T:0.03
Consensus pattern (31 bp):
ACAAAAGAAAAGAAAGAAAAAGAAAAGAGAG
Found at i:81979481 original size:18 final size:19
Alignment explanation
Indices: 81979445--81979483 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81979435 TTTGAGAGAG
*
81979445 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
81979464 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
81979482 AA
1 AA
81979484 TTGAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:81981719 original size:12 final size:12
Alignment explanation
Indices: 81981702--81981748 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
81981692 TATACAAGTT
81981702 AAAAAAAATTTG
1 AAAAAAAATTTG
*
81981714 AAAAAAAATTCG
1 AAAAAAAATTTG
* *
81981726 AAAAAAACTCTG
1 AAAAAAAATTTG
81981738 AAATAAAAATT
1 AAA-AAAAATT
81981749 GAAGTGAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 23 0.82
13 5 0.18
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.21
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:81982697 original size:6 final size:5
Alignment explanation
Indices: 81982672--81982729 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
81982662 AACGATAAAC
*
81982672 AAAAG AAAAG AAAAG AAAAAG CAAAAG AAGA- AAAAG AAAACG AAATA-
1 AAAAG AAAAG AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAA-G AAA-AG
81982719 AAAAG AAAAG A
1 AAAAG AAAAG A
81982730 GAGACAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 14 0.31
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:81982702 original size:15 final size:14
Alignment explanation
Indices: 81982672--81982739 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 14
81982662 AACGATAAAC
81982672 AAAAGAAAAGAAAAGA
1 AAAAGAAAAG--AAGA
81982688 AAAAGCAAAAGAAGA
1 AAAAG-AAAAGAAGA
*
81982703 AAAAGAAAACGAAATA
1 AAAAGAAAA-G-AAGA
81982719 AAAAGAAAAGAGAGA
1 AAAAGAAAAGA-AGA
81982734 CAAAAG
1 -AAAAG
81982740 GCAAGTAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
14 5 0.11
15 13 0.29
16 22 0.49
17 5 0.11
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.01
Consensus pattern (14 bp):
AAAAGAAAAGAAGA
Found at i:81982710 original size:31 final size:32
Alignment explanation
Indices: 81982670--81982739 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 32
81982660 GTAACGATAA
81982670 ACAAAAGAAAA-GAAAAGAAAAAGCAAAAGA-AG
1 ACAAAAGAAAACG-AAAGAAAAAG-AAAAGAGAG
*
81982702 A-AAAAGAAAACGAAATAAAAAGAAAAGAGAG
1 ACAAAAGAAAACGAAAGAAAAAGAAAAGAGAG
81982733 ACAAAAG
1 ACAAAAG
81982740 GCAAGTAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
30 6 0.18
31 21 0.62
32 7 0.21
ACGTcount: A:0.74, C:0.06, G:0.19, T:0.01
Consensus pattern (32 bp):
ACAAAAGAAAACGAAAGAAAAAGAAAAGAGAG
Found at i:81982892 original size:18 final size:19
Alignment explanation
Indices: 81982856--81982894 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81982846 TTTGAGAGAG
*
81982856 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
81982875 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
81982893 AA
1 AA
81982895 TTGAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:81985067 original size:30 final size:30
Alignment explanation
Indices: 81984991--81985076 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
81984981 TTCAACTCAT
* *
81984991 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTAAG
* * *
81985021 GAGTTTAACCTCAGCTCAACTTTAGCTCAAG
1 GAGCTAAACCTTAGCTCAACTTTAGCT-AAG
* *
81985052 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
81985077 GAAACCCAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 8 0.18
30 34 0.76
31 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTAAG
Found at i:81986762 original size:12 final size:12
Alignment explanation
Indices: 81986745--81986791 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
81986735 TATACAAGTT
81986745 AAAAAAAATTTG
1 AAAAAAAATTTG
*
81986757 AAAAAAAATTCG
1 AAAAAAAATTTG
* *
81986769 AAAAAAACTCTG
1 AAAAAAAATTTG
81986781 AAATAAAAATT
1 AAA-AAAAATT
81986792 GAAGTGAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 23 0.82
13 5 0.18
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.21
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:81987740 original size:6 final size:5
Alignment explanation
Indices: 81987715--81987772 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
81987705 AACGATAAAC
*
81987715 AAAAG AAAAG AAAAG AAAAAG CAAAAG AAGA- AAAAG AAAACG AAATA-
1 AAAAG AAAAG AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAA-G AAA-AG
81987762 AAAAG AAAAG A
1 AAAAG AAAAG A
81987773 GAGACAAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 14 0.31
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:81987749 original size:16 final size:16
Alignment explanation
Indices: 81987715--81987799 Score: 70
Period size: 16 Copynumber: 5.2 Consensus size: 16
81987705 AACGATAAAC
*
81987715 AAAAGAAAAGAAAAGA
1 AAAAGAAAAGAAGAGA
81987731 AAAAGCAAAAG-A-AGA
1 AAAAG-AAAAGAAGAGA
*
81987746 AAAAGAAAACGAA-ATA
1 AAAAGAAAA-GAAGAGA
81987762 AAAAGAAAAG-AGAGA
1 AAAAGAAAAGAAGAGA
*
81987777 CAAAAGGAAAGTAAGAGA
1 -AAAAGAAAAG-AAGAGA
81987795 GAAAA
1 -AAAA
81987800 TGAGCGAATC
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
14 5 0.09
15 12 0.21
16 27 0.47
17 5 0.09
18 9 0.16
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (16 bp):
AAAAGAAAAGAAGAGA
Found at i:81987753 original size:31 final size:31
Alignment explanation
Indices: 81987713--81987792 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 31
81987703 GTAACGATAA
81987713 ACAAAAGAAAAGAAAAGAAAAAGCAAAAGA-AG
1 ACAAAAGAAAAG-AAAGAAAAAG-AAAAGAGAG
*
81987745 A-AAAAGAAAACGAAATAAAAAGAAAAGAGAG
1 ACAAAAGAAAA-GAAAGAAAAAGAAAAGAGAG
* *
81987776 ACAAAAGGAAAGTAAGA
1 ACAAAAGAAAAGAAAGA
81987793 GAGAAAATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
30 6 0.15
31 25 0.61
32 10 0.24
ACGTcount: A:0.72, C:0.05, G:0.20, T:0.03
Consensus pattern (31 bp):
ACAAAAGAAAAGAAAGAAAAAGAAAAGAGAG
Found at i:81987934 original size:18 final size:19
Alignment explanation
Indices: 81987898--81987936 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81987888 TTTGAGAGAG
*
81987898 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
81987917 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
81987935 AA
1 AA
81987937 TTGAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:81988555 original size:17 final size:17
Alignment explanation
Indices: 81988528--81988570 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
81988518 AAATCCGAAT
*
81988528 ATATTTATTTTAGCATTA
1 ATATTTGTTTTA-CATTA
*
81988546 A-ATTTGTTTTATATTA
1 ATATTTGTTTTACATTA
81988562 ATATTTGTT
1 ATATTTGTT
81988571 ATTAATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 16 0.73
18 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.60
Consensus pattern (17 bp):
ATATTTGTTTTACATTA
Found at i:81993002 original size:10 final size:10
Alignment explanation
Indices: 81992973--81993005 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
81992963 GTAGAAATCA
81992973 GAAAATAATG
1 GAAAATAATG
*
81992983 AAAAAT-ATG
1 GAAAATAATG
81992992 GAAAATAATG
1 GAAAATAATG
81993002 GAAA
1 GAAA
81993006 TCAAATTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (10 bp):
GAAAATAATG
Found at i:81998451 original size:40 final size:40
Alignment explanation
Indices: 81998396--81998559 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
81998386 TGAATGATAC
* * *
81998396 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
81998436 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
81998476 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
81998516 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
81998556 CCGG
1 CCGG
81998560 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:81998529 original size:80 final size:80
Alignment explanation
Indices: 81998396--81998573 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
81998386 TGAATGATAC
* * * * * *
81998396 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
81998460 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
81998476 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
81998541 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
81998556 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
81998574 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:82000701 original size:18 final size:18
Alignment explanation
Indices: 82000678--82000736 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
82000668 TAGCCCATTT
82000678 CAGTAATAGTAATCAGTG
1 CAGTAATAGTAATCAGTG
* * *
82000696 CAGTAACCA-TGATCAATG
1 CAGTAA-TAGTAATCAGTG
*
82000714 CAGTAATAGTAATCAGTA
1 CAGTAATAGTAATCAGTG
82000732 CAGTA
1 CAGTA
82000737 TGCAAGCAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (18 bp):
CAGTAATAGTAATCAGTG
Found at i:82001129 original size:27 final size:27
Alignment explanation
Indices: 82001106--82001195 Score: 137
Period size: 27 Copynumber: 3.3 Consensus size: 27
82001096 GGTTATTACA
*
82001106 GTCATTTTACCCTA-CACGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
*
82001133 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
82001160 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
82001187 GTCATTTTA
1 GTCATTTTA
82001196 TCACATAAGG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:82001206 original size:27 final size:26
Alignment explanation
Indices: 82001176--82001396 Score: 208
Period size: 27 Copynumber: 8.2 Consensus size: 26
82001166 CTACCCTATG
*
82001176 AGGGTATTTCGGTCATTTTATCACATA
1 AGGGTATATC-GTCATTTTATCACATA
* * * *
82001203 AGGGCAAAATCATCATTTTATCACATG
1 AGGG-TATATCGTCATTTTATCACATA
* * *
82001230 AGGGCAAAATCATCATTTTATCACATA
1 AGGG-TATATCGTCATTTTATCACATA
* *
82001257 AGGGTAAAATCGCCATTTTATCACATA
1 AGGGT-ATATCGTCATTTTATCACATA
*
82001284 AGGGCAATATCGTCATTTTATCACATA
1 AGGG-TATATCGTCATTTTATCACATA
* * *
82001311 AAGGTAAAATCATCATTTTATCACATA
1 AGGGT-ATATCGTCATTTTATCACATA
*
82001338 AGGGCAATATCGTCATTTTATCACATA
1 AGGG-TATATCGTCATTTTATCACATA
* * *
82001365 AGGGTAAAAGCATCATTTTATCACATA
1 AGGGT-ATATCGTCATTTTATCACATA
82001392 AGGGT
1 AGGGT
82001397 TCGGGTACGC
Statistics
Matches: 164, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
27 161 0.98
28 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (26 bp):
AGGGTATATCGTCATTTTATCACATA
Found at i:82001219 original size:54 final size:54
Alignment explanation
Indices: 82001187--82001395 Score: 346
Period size: 54 Copynumber: 3.9 Consensus size: 54
82001177 GGGTATTTCG
* * *
82001187 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGCAATATC
* **
82001241 ATCATTTTATCACATAAGGGTAAAATCGCCATTTTATCACATAAGGGCAATATC
1 GTCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGCAATATC
*
82001295 GTCATTTTATCACATAAAGGTAAAATCATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGCAATATC
*
82001349 GTCATTTTATCACATAAGGGTAAAAGCATCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGG
82001396 TTCGGGTACG
Statistics
Matches: 143, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 143 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (54 bp):
GTCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGCAATATC
Found at i:82001261 original size:81 final size:80
Alignment explanation
Indices: 82001176--82001395 Score: 314
Period size: 81 Copynumber: 2.7 Consensus size: 80
82001166 CTACCCTATG
* *
82001176 AGGGTATTTCGGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATGAGGGCAAAATC
1 AGGGTATATC-GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
82001241 ATCATTTTATCACATA
65 ATCATTTTATCACATA
* * * * * *
82001257 AGGGTAAAATCGCCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAAGGTAAAATC
1 AGGGT-ATATCGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
82001322 ATCATTTTATCACATA
65 ATCATTTTATCACATA
* * *
82001338 AGGGCAATATCGTCATTTTATCACATAAGGGTAAAAGCATCATTTTATCACATAAGGG
1 AGGG-TATATCGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGG
82001396 TTCGGGTACG
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 118 0.98
82 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (80 bp):
AGGGTATATCGTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATCA
TCATTTTATCACATA
Found at i:82003780 original size:23 final size:23
Alignment explanation
Indices: 82003754--82003807 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
82003744 AGCTTATTGA
82003754 TTCAGCTCGTCAGAGCTTACCAT
1 TTCAGCTCGTCAGAGCTTACCAT
82003777 TTCAGCTCGTCAGAGCTTACCAT
1 TTCAGCTCGTCAGAGCTTACCAT
82003800 TTCAGCTC
1 TTCAGCTC
82003808 AATAGAGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.31
Consensus pattern (23 bp):
TTCAGCTCGTCAGAGCTTACCAT
Found at i:82003814 original size:23 final size:23
Alignment explanation
Indices: 82003754--82003819 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
82003744 AGCTTATTGA
*
82003754 TTCAGCTCGTCAGAGCTTACCAT
1 TTCAGCTCATCAGAGCTTACCAT
*
82003777 TTCAGCTCGTCAGAGCTTACCAT
1 TTCAGCTCATCAGAGCTTACCAT
82003800 TTCAGCTCAAT-AGAGCTTAC
1 TTCAGCTC-ATCAGAGCTTAC
82003820 TGTCCATCAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
23 40 0.98
24 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (23 bp):
TTCAGCTCATCAGAGCTTACCAT
Found at i:82005405 original size:15 final size:15
Alignment explanation
Indices: 82005385--82005414 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82005375 CAACACTTGT
82005385 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
82005400 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
82005415 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:82007041 original size:19 final size:19
Alignment explanation
Indices: 82007013--82007060 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
82007003 CTAAGGTTCG
* *
82007013 TTTTATAAAAACTACTTGT
1 TTTTAAAAAAACTACCTGT
82007032 TTTTAAAAAAAAACTACCTGT
1 TTTT--AAAAAAACTACCTGT
82007053 TTTTAAAA
1 TTTTAAAA
82007061 GATCACGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 8 0.32
21 17 0.68
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (19 bp):
TTTTAAAAAAACTACCTGT
Found at i:82007055 original size:20 final size:21
Alignment explanation
Indices: 82007019--82007060 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
82007009 TTCGTTTTAT
*
82007019 AAAAACTACTTGTTTTTAAAA
1 AAAAACTACCTGTTTTTAAAA
82007040 AAAAACTACCTGTTTTTAAAA
1 AAAAACTACCTGTTTTTAAAA
82007061 GATCACGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAAACTACCTGTTTTTAAAA
Found at i:82012340 original size:39 final size:39
Alignment explanation
Indices: 82012295--82012415 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
82012285 AAGCAAGACA
*
82012295 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
82012334 CTGGAAATGTATCCAGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
82012373 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
82012412 CTGG
1 CTGG
82012416 TAACATAATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:82017613 original size:2 final size:2
Alignment explanation
Indices: 82017606--82017634 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
82017596 TTGGTAAAGG
82017606 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82017635 GATTTTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82018301 original size:39 final size:39
Alignment explanation
Indices: 82018256--82018376 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
82018246 AAGCAAGACA
*
82018256 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
82018295 CTGGAAATGTATCCGGGCTAAAGTCCCGCGGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
82018334 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
82018373 CTGG
1 CTGG
82018377 TAACATAATT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:82020838 original size:13 final size:13
Alignment explanation
Indices: 82020820--82020844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82020810 TTACTTCTTC
82020820 AGCAAATTTGTGT
1 AGCAAATTTGTGT
82020833 AGCAAATTTGTG
1 AGCAAATTTGTG
82020845 AAGGCTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (13 bp):
AGCAAATTTGTGT
Found at i:82022876 original size:20 final size:20
Alignment explanation
Indices: 82022835--82022873 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
82022825 ATGTGTATTT
82022835 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
82022855 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
82022874 ATGCAATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:82022885 original size:20 final size:21
Alignment explanation
Indices: 82022844--82022886 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
82022834 TTGAAGTTTC
*
82022844 TTGATAGATTATGAATGTTTG
1 TTGATAGATTATGAATGCTTG
82022865 TTGATAGA-TATGCAAT-CTTG
1 TTGATAGATTATG-AATGCTTG
82022885 TT
1 TT
82022887 AAGTGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.47
Consensus pattern (21 bp):
TTGATAGATTATGAATGCTTG
Found at i:82026543 original size:2 final size:2
Alignment explanation
Indices: 82026536--82026570 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
82026526 CATTTTAACT
82026536 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82026571 CAAAATCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82026925 original size:68 final size:68
Alignment explanation
Indices: 82026777--82026932 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
82026767 AGCCTATTTG
* * * **
82026777 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACACA
*
82026842 TATC
65 TAGC
* *
82026846 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
82026908 ACATAGC
62 ACATAGC
*
82026915 ATCTCGTAGCTTTCTTGT
1 -TCTCGTAGCTCTCTTGT
82026933 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 35 0.48
69 7 0.10
70 5 0.07
71 26 0.36
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACACAT
AGC
Found at i:82035560 original size:39 final size:40
Alignment explanation
Indices: 82035513--82035610 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 40
82035503 GGACTAGGAT
82035513 CCGAAGGCATTCGTGCGAGATAATAAATCC-GGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGATAATAAA-CCTGGGCTAAGTC
* * * * *
82035552 CCGAAGGCATTTGTGCAAGTTACTAAACCTGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAATAAACCTGGGCTAAGTC
82035592 CCGAAGGCATTCGTGCGAG
1 CCGAAGGCATTCGTGCGAG
82035611 TCACTATAAC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.04
39 30 0.60
40 18 0.36
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATAATAAACCTGGGCTAAGTC
Found at i:82041090 original size:46 final size:45
Alignment explanation
Indices: 82041040--82041210 Score: 197
Period size: 44 Copynumber: 3.8 Consensus size: 45
82041030 TGGTTGAGCA
82041040 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
82041086 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
82041131 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
* *
82041177 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82041211 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 32 0.30
45 3 0.03
46 30 0.28
47 29 0.27
48 2 0.02
49 2 0.02
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:82045354 original size:46 final size:47
Alignment explanation
Indices: 82045214--82045382 Score: 186
Period size: 46 Copynumber: 3.6 Consensus size: 47
82045204 TTTGTGTGCT
* * * * *
82045214 AGTGTAAGACATGTCTGGGACATGTATCGGCCAC-A-TTTTGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGT-AGAGCC
* * *
82045260 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACG-AGAGCC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
82045308 AGTGTAAGACATGTCTT-GGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGT-TTGGGACATGCATCGGCCTCGAGATGTAGAGCC
*
82045354 AGTGTCAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTTTGGGACATGCATCG
82045383 ACTACAAGGT
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.02
46 52 0.50
47 25 0.24
48 24 0.23
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:82052855 original size:13 final size:13
Alignment explanation
Indices: 82052837--82052863 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82052827 GCTCAGCAGG
82052837 GACACGCCCGTGT
1 GACACGCCCGTGT
82052850 GACACGCCCGTGT
1 GACACGCCCGTGT
82052863 G
1 G
82052864 CAATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:82055485 original size:31 final size:31
Alignment explanation
Indices: 82055443--82055552 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
82055433 CTTGACATTT
*
82055443 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
82055474 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
82055505 ACTGGGCCGAAGCCTTTTTATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
82055536 ACTGAGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82055553 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:82055800 original size:25 final size:25
Alignment explanation
Indices: 82055772--82055841 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
82055762 CTCTTTTAAT
*
82055772 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82055797 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82055822 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82055842 AACACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82056799 original size:27 final size:27
Alignment explanation
Indices: 82056769--82056876 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
82056759 GTAAATCTAC
82056769 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
82056796 AAACTAACGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
82056822 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
82056852 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
82056877 ACAAATTGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:82056882 original size:27 final size:27
Alignment explanation
Indices: 82056818--82056982 Score: 158
Period size: 27 Copynumber: 6.1 Consensus size: 27
82056808 TTTCTATAAT
* *
82056818 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
82056846 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
82056873 TTTTACAAAT-TGAAGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * * *
82056900 TTTCACAAACCAGTGGTATTTCGATAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
82056927 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
82056954 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
82056981 TT
1 TT
82056983 CTATCTTATA
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.03
27 105 0.91
28 8 0.07
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:82056918 original size:54 final size:54
Alignment explanation
Indices: 82056856--82056982 Score: 175
Period size: 54 Copynumber: 2.4 Consensus size: 54
82056846 TTTTGTAAAT
*
82056856 CAGGGGTATTTTGGTAATTTTACAAA-TTGAAGGTATTTTGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-AGGTATTTTGGTAATTTCACAAAC
* * * * *
82056910 CAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTCACAAAC
*
82056964 TAGGGGTATTTTGGTAATT
1 CAGGGGTATTTTGGTAATT
82056983 CTATCTTATA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
54 60 0.97
55 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTAATTTCACAAAC
Found at i:82057002 original size:81 final size:81
Alignment explanation
Indices: 82056832--82056982 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
82056822 AGAAAGTCAA
** *
82056832 GGGTATTTCTG-TAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTTG
1 GGGTATTTC-GATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTTG
82056896 GTAATTTCACAAACCAG
65 GTAATTTCACAAACCAG
* *
82056913 TGGTATTTCGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCGATAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAAGGTATTTT
82056976 GGTAATT
64 GGTAATT
82056983 CTATCTTATA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
80 2 0.03
81 58 0.94
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTTGG
TAATTTCACAAACCAG
Found at i:82057008 original size:81 final size:81
Alignment explanation
Indices: 82056857--82057015 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
82056847 TTTGTAAATC
* *
82056857 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTTGGTAATTTCACAAACCAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTTGGTAATTTCACAAACCAGGGGTATTTC
* *
82056922 GATAATTTTACAAACT
66 AATAATTTCACAAACT
* ** *
82056938 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCTTA-TAGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAAGGTATTTTGGTAATTTC-A-CAAACCAGGGGTAT
82057000 TTCAATAATTTCACAA
63 TTCAATAATTTCACAA
82057016 CCGAGGGTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 3 0.04
81 60 0.90
82 4 0.06
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTTGGTAATTTCACAAACCAGGGGTATTTC
AATAATTTCACAAACT
Found at i:82057048 original size:27 final size:27
Alignment explanation
Indices: 82057018--82057157 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 27
82057008 TTTCACAACC
*
82057018 GAGGGTAAAACGGTAATTTTGTAAACT-
1 GAGGGTAAAACGGTAATTTTATAAA-TA
** *
82057045 GAGGGTAAATTGGTAATTTTGTAAATTA
1 GAGGGTAAAACGGTAATTTTATAAA-TA
* *
82057073 -AGGGTAAAACAGTAATTTTATAAATC
1 GAGGGTAAAACGGTAATTTTATAAATA
* *
82057099 GAGGGTGAAACGGTAATTCTATAAATA
1 GAGGGTAAAACGGTAATTTTATAAATA
* * * *
82057126 GAGGGTAAAATGGTAATTCTACAAATT
1 GAGGGTAAAACGGTAATTTTATAAATA
82057153 GAGGG
1 GAGGG
82057158 CATTTTAGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 94 0.99
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTATAAATA
Found at i:82060975 original size:130 final size:131
Alignment explanation
Indices: 82060740--82061003 Score: 404
Period size: 130 Copynumber: 2.0 Consensus size: 131
82060730 TAACTATTCA
* **
82060740 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAAGAATCGTGCCCTATCG
* * *
82060805 TGCTGGGTTGCGATTTCCCGTTTGTTCAAAACAAACAAATATTCCTTTGGAATTTCACTCATG-T
66 TGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAAACAAATATTCCCTTAGAATTTCACTCATGAT
82060869 C
131 C
* **
82060870 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCAAGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAAGAATCGTGCCCTATCG
* * **
82060935 TGCTAGGTTGCGATTTCCTGTTTGTTCAAAATAATTAAATATTCCCTTAGAATTTCACTCATGAT
66 TGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAAACAAATATTCCCTTAGAATTTCACTCATGAT
82061000 C
131 C
82061001 TTT
1 TTT
82061004 GAATTCTAAA
Statistics
Matches: 120, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
130 115 0.96
131 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAAGAATCGTGCCCTATCG
TGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAAACAAATATTCCCTTAGAATTTCACTCATGAT
C
Found at i:82074542 original size:29 final size:29
Alignment explanation
Indices: 82074481--82074579 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
82074471 ACAGTAAGTC
82074481 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
82074509 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82074538 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82074566 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82074580 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:82075706 original size:17 final size:18
Alignment explanation
Indices: 82075669--82075706 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
82075659 CACTTTTTTT
82075669 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
82075688 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
82075705 TT
1 TT
82075707 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:82082302 original size:29 final size:29
Alignment explanation
Indices: 82082241--82082339 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
82082231 ACAGTAAGTC
82082241 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
82082269 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82082298 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
82082326 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82082340 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:82083459 original size:17 final size:18
Alignment explanation
Indices: 82083422--82083459 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
82083412 CACTTTTTTT
82083422 TTCCTTTGTTTTCATCGTA
1 TTCCTTTGTTTTCATC-TA
*
82083441 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATCTA
82083458 TT
1 TT
82083460 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.11, C:0.18, G:0.05, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATCTA
Found at i:82086791 original size:87 final size:88
Alignment explanation
Indices: 82086688--82086891 Score: 286
Period size: 88 Copynumber: 2.3 Consensus size: 88
82086678 AGTGAATCTT
* * *
82086688 GTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCTACCA-TCCTATCTCCCTAA-GTTGTAGTGG
1 GTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCACT-CTATCTCCCTAATGTTGTAGTGG
*
82086751 AGTAGGCTAAAGATTGTAGATATC
65 AGTAGGCCAAAGATTGTAGATATC
82086775 GTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCACTCTATCTCCCTAATGTTGTAGTGGA
1 GTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCACTCTATCTCCCTAATGTTGTAGTGGA
* * *
82086840 GTAGGCCGAAGATTGTAGATCTT
66 GTAGGCCAAAGATTGTAGATATC
* * * *
82086863 TTCTCCCTAAAGTTGTAGTGGAGCAAATT
1 GTCTCCCTGAAGTTGCAGTGAAGCAAATT
82086892 GAAGACAATG
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
87 48 0.46
88 56 0.54
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (88 bp):
GTCTCCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCACTCTATCTCCCTAATGTTGTAGTGGA
GTAGGCCAAAGATTGTAGATATC
Found at i:82086876 original size:88 final size:88
Alignment explanation
Indices: 82086644--82086971 Score: 306
Period size: 87 Copynumber: 3.7 Consensus size: 88
82086634 ATAGATCTTG
* * ** ** *
82086644 TCTCCCTAATGTTGCAGTGGAGCAGATCGAAGACAGT-GAATCTTGTCTTCCTGAAGTTGCAGTG
1 TCTCCCTAATGTTGTAGTGGAGTAGGCCGAAGATTGTAG-ATCTTGTCTCCCTGAAGTTGCAGTG
* *
82086708 AAGCAGATTTAAGCTACCATCCTA
65 AAGCAAATTTAAGCCACCATCCTA
** * *
82086732 TCTCCCTAA-GTTGTAGTGGAGTAGGCTAAAGATTGTAGATATCGTCTCCCTGAAGTTGCAGTGA
1 TCTCCCTAATGTTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTGA
82086796 AGCAAATTTAAGCCACCA-CTCTA
66 AGCAAATTTAAGCCACCATC-CTA
* * * *
82086819 TCTCCCTAATGTTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTTTCTCCCTAAAGTTGTAGTGG
1 TCTCCCTAATGTTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTGA
* * ** *
82086884 AGCAAATTGAAGACAATGAGCCTTA
66 AGCAAATTTAAG-CCACCATCC-TA
* * * ** * * *
82086909 ACCCCCTAA-GTAGTAG-GGTAACAGGCCAAAGATTGCAGATCTTATCTCCCTGAAGTTGCAGTG
1 TCTCCCTAATGTTGTAGTGG-AGTAGGCCGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTG
82086972 GAGAAAATCG
Statistics
Matches: 198, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
86 1 0.01
87 70 0.35
88 70 0.35
89 47 0.24
90 10 0.05
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (88 bp):
TCTCCCTAATGTTGTAGTGGAGTAGGCCGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTGA
AGCAAATTTAAGCCACCATCCTA
Found at i:82087113 original size:89 final size:89
Alignment explanation
Indices: 82086842--82087120 Score: 393
Period size: 89 Copynumber: 3.1 Consensus size: 89
82086832 GTAGTGGAGT
* * * * * * * * *
82086842 AGGCCGAAGATTGTAGATCTTTTCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGACAATGAGCCT
1 AGGCTGAAAATTGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAAAATGAAGACACTGAGCGT
*
82086907 TAACCCCCTAAGTAGTAGGGTAAC
66 TAATCCCCTAAGTAGTAGGGTAAC
*
82086931 AGGC-CAAAGATTGCAGATCTTATCTCCCTGAAGTTGCAGTGGAG-AAAATCGAAGACACTGAGC
1 AGGCTGAAA-ATTGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAAAAT-GAAGACACTGAGC
82086994 GTTAATCCCCTAAGTAGTAGGGTAAC
64 GTTAATCCCCTAAGTAGTAGGGTAAC
* *
82087020 AGGCTGAAAATTGCA-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACACTGAGCG
1 AGGCTGAAAATTGCAGA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAAAATGAAGACACTGAGCG
82087084 TTAATCCCCTAAGTAGTAGGGTAAC
65 TTAATCCCCTAAGTAGTAGGGTAAC
82087109 AGGCTGAAAATT
1 AGGCTGAAAATT
82087121 ATCTCCCTAA
Statistics
Matches: 172, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
88 7 0.04
89 159 0.92
90 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (89 bp):
AGGCTGAAAATTGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAAAATGAAGACACTGAGCGT
TAATCCCCTAAGTAGTAGGGTAAC
Found at i:82095896 original size:27 final size:26
Alignment explanation
Indices: 82095848--82095907 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
82095838 GCGAGGCTGC
*
82095848 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82095875 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
82095901 CAGATAT
1 CAGATAT
82095908 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82099446 original size:21 final size:21
Alignment explanation
Indices: 82099422--82099463 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
82099412 ATCGTTTTAT
* *
82099422 AAAAACTACTTGTTTTTAAAA
1 AAAAACTACCTGTATTTAAAA
82099443 AAAAACTACCTGTATTTAAAA
1 AAAAACTACCTGTATTTAAAA
82099464 GATCATGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAACTACCTGTATTTAAAA
Found at i:82107257 original size:22 final size:23
Alignment explanation
Indices: 82107219--82107262 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
82107209 TTCGTTTTAT
*
82107219 AAAAACTACTTGTTTTTTAAAAA
1 AAAAACTACCTGTTTTTTAAAAA
82107242 AAAAACTACCTG-TTTTTAAAA
1 AAAAACTACCTGTTTTTTAAAA
82107263 GATCACGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAAACTACCTGTTTTTTAAAAA
Found at i:82107370 original size:27 final size:27
Alignment explanation
Indices: 82107340--82107395 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
82107330 GACTTAAACT
82107340 TGTTTTAATGTTCGTAGACATGTAACC
1 TGTTTTAATGTTCGTAGACATGTAACC
82107367 TGTTTTAATGTTCGTAGACATGTAACC
1 TGTTTTAATGTTCGTAGACATGTAACC
82107394 TG
1 TG
82107396 CTTAAAGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
TGTTTTAATGTTCGTAGACATGTAACC
Found at i:82110507 original size:130 final size:130
Alignment explanation
Indices: 82110259--82110522 Score: 343
Period size: 130 Copynumber: 2.0 Consensus size: 130
82110249 TAACTATTCT
* * *
82110259 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAGGAATCGTGCCCTATCA
* * * * *
82110324 TGCTGGGTTGCGATTTCCCGTTTTTTCAAAGCAAATGAATATTTATTTGGAATTTCACTAATG-T
66 TGCTGGATTGCGATTTCCCGTTTGTTCAAA-CAAATGAATATTCACTTAGAATTTCACTAATGTT
82110388 C
130 C
* * ** *
82110389 TTTAAAAATTCTTCAAAACGAATGTAATGTTCGATGTTTGGTAATTCAGGAATCGTGCCCTATCA
1 TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAGGAATCGTGCCCTATCA
* * *
82110454 TGCTGGATTGCGATTTCCTGTTTGTTCAAA-ATAATCGAATATTCCCTTAGAATTTCACTCATGT
66 TGCTGGATTGCGATTTCCCGTTTGTTCAAACA-AAT-GAATATTCACTTAGAATTTCACTAATGT
82110518 TC
129 TC
82110520 TTT
1 TTT
82110523 GAATTCTAAA
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
128 1 0.01
129 3 0.03
130 106 0.92
131 5 0.04
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAACGAAGGCAATACTCGATGTTTGGCAATTCAGGAATCGTGCCCTATCA
TGCTGGATTGCGATTTCCCGTTTGTTCAAACAAATGAATATTCACTTAGAATTTCACTAATGTTC
Found at i:82115071 original size:80 final size:80
Alignment explanation
Indices: 82114987--82115135 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82114977 TATGGTAACC
* * * *
82114987 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82115051 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82115067 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82115132 CCGG
66 CCGG
82115136 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82115077 original size:40 final size:38
Alignment explanation
Indices: 82115028--82115135 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82115018 ATCACGATTT
*
82115028 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82115068 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82115108 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82115136 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82123189 original size:80 final size:80
Alignment explanation
Indices: 82123105--82123253 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82123095 TATGGTAACC
* * * *
82123105 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82123169 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82123185 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82123250 CCGG
66 CCGG
82123254 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82123195 original size:40 final size:38
Alignment explanation
Indices: 82123146--82123253 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82123136 ATCACGATTT
*
82123146 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82123186 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82123226 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82123254 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82127386 original size:48 final size:48
Alignment explanation
Indices: 82127333--82127661 Score: 223
Period size: 48 Copynumber: 6.9 Consensus size: 48
82127323 GCCACATTAT
82127333 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAC
* * *
82127381 GAGAGCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGC--TACGAG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAC
* * * * * *
82127425 GTGTGTCAATGTAAGACCATGTCTGGGACATGGCATCGGCA--CAGATA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGA-C
* * * * * *
82127472 GAGGTGTCAGTGTAATACCATGTCTAGGACATGGCATCGGCATGGATATG-T
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT---TAAGAC
* * * * * ***
82127523 GAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGACCTTGATTTC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-AAGAC
* * * * *
82127572 GATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-TT--GATG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGA-C
* *
82127618 GATGATCCAGTGTAAG-CCATGTTTGGGACATGGCATTC-GCATTA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGGCATTA
82127662 TATGCTATGT
Statistics
Matches: 224, Mismatches: 40, Indels: 34
0.75 0.13 0.11
Matches are distributed among these distances:
44 15 0.07
45 14 0.06
46 40 0.18
47 30 0.13
48 55 0.25
49 34 0.15
50 33 0.15
51 2 0.01
53 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAC
Found at i:82147606 original size:7 final size:7
Alignment explanation
Indices: 82147596--82147669 Score: 60
Period size: 7 Copynumber: 10.4 Consensus size: 7
82147586 CCTAAACCTC
82147596 TAACCCT
1 TAACCCT
*
82147603 TAACCCC
1 TAACCCT
82147610 TAACCCT
1 TAACCCT
*
82147617 TAGCCCCT
1 TA-ACCCT
*
82147625 AAACCCT
1 TAACCCT
*
82147632 AAACCCT
1 TAACCCT
*
82147639 TAAACCT
1 TAACCCT
*
82147646 TAAACCT
1 TAACCCT
82147653 TAAACCC-
1 T-AACCCT
*
82147660 TAACTCT
1 TAACCCT
82147667 TAA
1 TAA
82147670 ACCATAATCC
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
6 4 0.07
7 42 0.76
8 9 0.16
ACGTcount: A:0.35, C:0.39, G:0.01, T:0.24
Consensus pattern (7 bp):
TAACCCT
Found at i:82147624 original size:22 final size:22
Alignment explanation
Indices: 82147607--82147660 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
82147597 AACCCTTAAC
82147607 CCCT-AACCCTTAGCCCCTAAA
1 CCCTAAACCCTTAGCCCCTAAA
** *
82147628 CCCTAAACCCTTAAACCTTAAA
1 CCCTAAACCCTTAGCCCCTAAA
*
82147650 CCTTAAACCCT
1 CCCTAAACCCT
82147661 AACTCTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.33, C:0.43, G:0.02, T:0.22
Consensus pattern (22 bp):
CCCTAAACCCTTAGCCCCTAAA
Found at i:82147682 original size:50 final size:50
Alignment explanation
Indices: 82147588--82147706 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 50
82147578 GATTTAGGCC
* * ** * *
82147588 TAAACCTCTAACCCTTAACCCCTAACCCTTAGCCCCTAAACCCTAAACCCT
1 TAAACCT-TAAACCTTAAACCCTAACCCTTAAACCATAAACCCTAAACCCA
* *
82147639 TAAACCTTAAACCTTAAACCCTAACTCTTAAACCATAATCCCTAAACCCA
1 TAAACCTTAAACCTTAAACCCTAACCCTTAAACCATAAACCCTAAACCCA
* *
82147689 TAATCCATAAACCTTAAA
1 TAAACCTTAAACCTTAAA
82147707 ATAGTAACTT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 51 0.88
51 7 0.12
ACGTcount: A:0.39, C:0.37, G:0.01, T:0.24
Consensus pattern (50 bp):
TAAACCTTAAACCTTAAACCCTAACCCTTAAACCATAAACCCTAAACCCA
Found at i:82147691 original size:15 final size:14
Alignment explanation
Indices: 82147586--82147706 Score: 68
Period size: 14 Copynumber: 8.4 Consensus size: 14
82147576 GGGATTTAGG
82147586 CCTAAACCTCT-AAC
1 CCTAAACC-CTAAAC
*
82147600 CCTTAACCCCT-AAC
1 CC-TAAACCCTAAAC
**
82147614 CCTTAGCCCCTAAAC
1 CC-TAAACCCTAAAC
82147629 CCTAAACCCTTAAAC
1 CCTAAACCC-TAAAC
* *
82147644 CTTAAACCTTAAAC
1 CCTAAACCCTAAAC
*
82147658 CCT-AACTCTTAAAC
1 CCTAAAC-CCTAAAC
* *
82147672 CATAATCCCTAAAC
1 CCTAAACCCTAAAC
* *
82147686 CCATAATCCATAAAC
1 CC-TAAACCCTAAAC
*
82147701 CTTAAA
1 CCTAAA
82147707 ATAGTAACTT
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
13 3 0.03
14 48 0.55
15 36 0.41
ACGTcount: A:0.38, C:0.38, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCCTAAAC
Found at i:82147706 original size:7 final size:7
Alignment explanation
Indices: 82147624--82147706 Score: 60
Period size: 7 Copynumber: 11.6 Consensus size: 7
82147614 CCTTAGCCCC
*
82147624 TAAACCC
1 TAAACCT
82147631 TAAACCCT
1 TAAA-CCT
82147639 TAAACCT
1 TAAACCT
82147646 TAAACCT
1 TAAACCT
*
82147653 TAAACCC
1 TAAACCT
82147660 T-AACTCT
1 TAAAC-CT
*
82147667 TAAACCA
1 TAAACCT
* *
82147674 TAATCCC
1 TAAACCT
*
82147681 TAAACCCA
1 TAAA-CCT
* *
82147689 TAATCCA
1 TAAACCT
82147696 TAAACCT
1 TAAACCT
82147703 TAAA
1 TAAA
82147707 ATAGTAACTT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
6 3 0.05
7 44 0.72
8 14 0.23
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (7 bp):
TAAACCT
Found at i:82147736 original size:14 final size:14
Alignment explanation
Indices: 82147717--82147755 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
82147707 ATAGTAACTT
* *
82147717 CTAAACCATATACC
1 CTAAACCATAAACA
82147731 CTAAACCATAAACA
1 CTAAACCATAAACA
*
82147745 CTAAACTATAA
1 CTAAACCATAA
82147756 TGATAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAACCATAAACA
Found at i:82148101 original size:40 final size:41
Alignment explanation
Indices: 82148053--82148143 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 41
82148043 CGTTTTCGAC
* * *
82148053 AAAGCGCCGCTAAAGTTCGGTCTATAGTGGCATTTTTC-AA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCATTTTTCAAA
* **
82148093 AAAGCGCCGCTAATGCTCGATCTATAGCGGTGTTTTTCAAA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCATTTTTCAAA
82148134 AAAGCGCCGC
1 AAAGCGCCGC
82148144 AAGTGCAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 32 0.73
41 12 0.27
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (41 bp):
AAAGCGCCGCTAAAGCTCGATCTATAGCGGCATTTTTCAAA
Found at i:82148261 original size:40 final size:40
Alignment explanation
Indices: 82148188--82148353 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 40
82148178 TTTGCAGCAT
* * *
82148188 TTTTTTATAAACCGCCGCTAATAG-TCGACCTATAGTGGCG
1 TTTTTTAAAAAGCGCCGCTAAT-GCTCGACCTATAGCGGCG
** * * **
82148228 TTTTCCAAAAAGCGCCGCTAATGCTCGATCTATAGCAGAT
1 TTTTTTAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG
* *
82148268 TTTTTTAAAAAGCGCCGCTAATGGTTGACCTATAGCGGCG
1 TTTTTTAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG
* * * * *
82148308 TTTTTTAAGAAGCGCCGCTAATGCTCAAGCTACAGTGGCG
1 TTTTTTAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG
82148348 TTTTTT
1 TTTTTT
82148354 GTCCAAGCGC
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (40 bp):
TTTTTTAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG
Found at i:82148289 original size:80 final size:81
Alignment explanation
Indices: 82148181--82148333 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 81
82148171 TAATTTTTTT
* *
82148181 GCAGCATTTTTTTATAAACCGCCGCTAATAGTCGACCTATAGTGGCGTTTTCCAAAAAGCGCCGC
1 GCAGCATTTTTTTAAAAACCGCCGCTAATAGTCGACCTATAGCGGCGTTTTCCAAAAAGCGCCGC
82148246 TAATGCTCGATCTATA
66 TAATGCTCGATCTATA
* * * ** *
82148262 GCAG-ATTTTTTTAAAAAGCGCCGCTAATGGTTGACCTATAGCGGCGTTTTTTAAGAAGCGCCGC
1 GCAGCATTTTTTTAAAAACCGCCGCTAATAGTCGACCTATAGCGGCGTTTTCCAAAAAGCGCCGC
82148326 TAATGCTC
66 TAATGCTC
82148334 AAGCTACAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 60 0.94
81 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (81 bp):
GCAGCATTTTTTTAAAAACCGCCGCTAATAGTCGACCTATAGCGGCGTTTTCCAAAAAGCGCCGC
TAATGCTCGATCTATA
Found at i:82152146 original size:27 final size:28
Alignment explanation
Indices: 82152090--82152159 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
82152080 AAATTTGTAC
82152090 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82152118 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82152145 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82152160 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82152170 original size:27 final size:27
Alignment explanation
Indices: 82152090--82152171 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
82152080 AAATTTGTAC
* *
82152090 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
82152118 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
82152145 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
82152172 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:82159969 original size:27 final size:28
Alignment explanation
Indices: 82159913--82159982 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
82159903 AAATTTGTAC
82159913 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82159941 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82159968 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82159983 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82159993 original size:27 final size:27
Alignment explanation
Indices: 82159913--82159994 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
82159903 AAATTTGTAC
* *
82159913 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
82159941 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
82159968 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
82159995 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:82164362 original size:42 final size:43
Alignment explanation
Indices: 82164297--82164464 Score: 188
Period size: 42 Copynumber: 4.0 Consensus size: 43
82164287 AGCTAGTACA
* *
82164297 ATGCCAACGTCCCAGACGTGGTCTTACA-ATAATCAGATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCAGATATCG
* * * *
82164339 ATGCCACTGTCCTAGACAGGGTCTTACACGA-AATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-ATAATCAGATATCG
82164381 ATGCCAATGTCCCAGACATGGTCTTACACATGAATCAG---TCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAT-AATCAGATATCG
* *
82164422 ATGCCAATGTCCCCGACATGGTCTTACACGATAA-CACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-ATAATCAGATATCG
82164465 GAATCCTATG
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
40 2 0.02
41 33 0.31
42 53 0.50
43 16 0.15
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCAGATATCG
Found at i:82164452 original size:83 final size:82
Alignment explanation
Indices: 82164297--82164452 Score: 215
Period size: 83 Copynumber: 1.9 Consensus size: 82
82164287 AGCTAGTACA
* * *
82164297 ATGCCAACGTCCCAGACGTGGTCTTACAATAATCAGATATCGATGCCACTGTCCTAGACAGGGTC
1 ATGCCAACGTCCCAGACATGGTCTTACAATAATCAG--ATCGATGCCAATGTCCCAGACAGGGTC
82164362 TTACACGAAATCATATACG
64 TTACACGAAATCATATACG
* * *
82164381 ATGCCAATGTCCCAGACATGGTCTTACACATGAATCAG-TCGATGCCAATGTCCCCGACATGGTC
1 ATGCCAACGTCCCAGACATGGTCTTACA-AT-AATCAGATCGATGCCAATGTCCCAGACAGGGTC
82164445 TTACACGA
64 TTACACGA
82164453 TAACACATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
83 30 0.47
84 26 0.41
85 2 0.03
86 6 0.09
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (82 bp):
ATGCCAACGTCCCAGACATGGTCTTACAATAATCAGATCGATGCCAATGTCCCAGACAGGGTCTT
ACACGAAATCATATACG
Found at i:82167989 original size:47 final size:47
Alignment explanation
Indices: 82167919--82168049 Score: 183
Period size: 47 Copynumber: 2.8 Consensus size: 47
82167909 CACAATTGAT
* * **
82167919 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATTC-TG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TACTCAAA
* *
82167966 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCAAA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTACTCAAA
*
82168013 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
82168050 TTTACTCGCA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
46 3 0.04
47 72 0.96
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTACTCAAA
Found at i:82170120 original size:39 final size:39
Alignment explanation
Indices: 82170073--82170294 Score: 300
Period size: 39 Copynumber: 5.6 Consensus size: 39
82170063 AATGTTCGAG
82170073 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
82170112 TGATATCCGGGCTAAGCCCGAAGGCAATTGTACGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
82170151 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
82170190 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
82170229 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
82170269 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
82170295 GTTTGAACGA
Statistics
Matches: 161, Mismatches: 21, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 124 0.77
40 37 0.23
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:82176136 original size:15 final size:15
Alignment explanation
Indices: 82176116--82176148 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
82176106 CTCCTAGGTG
82176116 ACCCGTTCACTAAGA
1 ACCCGTTCACTAAGA
*
82176131 ACCCGTTCACTAGGA
1 ACCCGTTCACTAAGA
82176146 ACC
1 ACC
82176149 ACCGATATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.18
Consensus pattern (15 bp):
ACCCGTTCACTAAGA
Found at i:82178615 original size:64 final size:64
Alignment explanation
Indices: 82178535--82178706 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
82178525 AGACATTATG
*
82178535 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
* * * * * * *
82178599 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAAAGAGCTACGAGAT
82178664 AA
63 AA
* * * *
82178666 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
82178707 GTACAAGAGA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
63 9 0.10
64 21 0.24
65 8 0.09
66 16 0.18
67 31 0.36
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
Found at i:82181567 original size:37 final size:37
Alignment explanation
Indices: 82181508--82181653 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
82181498 AGCTCAGACG
* *
82181508 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82181545 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
82181582 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
82181619 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82181654 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82181868 original size:47 final size:47
Alignment explanation
Indices: 82181816--82182002 Score: 311
Period size: 47 Copynumber: 4.0 Consensus size: 47
82181806 TTTCACACTA
* * * *
82181816 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
82181863 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
82181910 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
82181957 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
82182003 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:82184060 original size:53 final size:53
Alignment explanation
Indices: 82183997--82184122 Score: 234
Period size: 53 Copynumber: 2.4 Consensus size: 53
82183987 CTCAAAGCTC
*
82183997 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
82184050 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
82184103 TTTTTTCTTTCTTTTTCTTT
1 TTTTTTC-TTCTTTTTCTTT
82184123 TTTTATCATC
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
53 59 0.83
54 12 0.17
ACGTcount: A:0.16, C:0.21, G:0.10, T:0.54
Consensus pattern (53 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
Found at i:82189232 original size:24 final size:26
Alignment explanation
Indices: 82189164--82189234 Score: 98
Period size: 24 Copynumber: 2.9 Consensus size: 26
82189154 TACCGATATA
*
82189164 TCAGCTCG-TAAGAGCTTACT-ATTC
1 TCAGCTCGATAAGAGCTTACTGTTTC
82189188 TCAGCTC-ATAAGAGCTTACTGTTTC
1 TCAGCTCGATAAGAGCTTACTGTTTC
82189213 -CAGCTCGATAA-AGCTTACTGTT
1 TCAGCTCGATAAGAGCTTACTGTT
82189235 CATTAGCTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 36 0.84
25 7 0.16
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
TCAGCTCGATAAGAGCTTACTGTTTC
Found at i:82191575 original size:43 final size:43
Alignment explanation
Indices: 82191528--82191610 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
82191518 GCCTTAAACG
* *
82191528 AAATCA-AATACGATGCCAACATTCCAGATGTGGTCTTACAAAT
1 AAATCATAAT-CGATGCCAACATCCCAAATGTGGTCTTACAAAT
*
82191571 AAATCATAGTCGATGCCAACATCCCAAATGTGGTCTTACA
1 AAATCATAATCGATGCCAACATCCCAAATGTGGTCTTACA
82191611 CGATAACACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 34 0.94
44 2 0.06
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (43 bp):
AAATCATAATCGATGCCAACATCCCAAATGTGGTCTTACAAAT
Found at i:82196825 original size:26 final size:26
Alignment explanation
Indices: 82196789--82196921 Score: 102
Period size: 26 Copynumber: 5.3 Consensus size: 26
82196779 TTTGTACTTG
82196789 TTTTAAATCTCTTCATATATTATTTA
1 TTTTAAATCTCTTCATATATTATTTA
82196815 TTTTAAATCTCTTCATATATTA-TTA
1 TTTTAAATCTCTTCATATATTATTTA
* * **
82196840 TTTCAAA-AT-TTCATAT-TGCTTTA
1 TTTTAAATCTCTTCATATATTATTTA
* * * *
82196863 TCTTAAATCGT-TTTATATAGTAGTTA
1 TTTTAAATC-TCTTCATATATTATTTA
82196889 TTTTAAACTGCTCTGTCATAT-TT-TTT-
1 TTTTAAA-T-CTCT-TCATATATTATTTA
82196915 TTTTAAA
1 TTTTAAA
82196922 ATTTGTTTTA
Statistics
Matches: 83, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
22 1 0.01
23 15 0.18
24 1 0.01
25 16 0.19
26 38 0.46
27 4 0.05
28 3 0.04
29 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.05, T:0.55
Consensus pattern (26 bp):
TTTTAAATCTCTTCATATATTATTTA
Found at i:82234210 original size:43 final size:42
Alignment explanation
Indices: 82234144--82234257 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
82234134 CGTACAATGC
* * *
82234144 CAACGTCCCACACGTGGTCTTACATGTAATCAAATATCGATGA
1 CAACATCCCAGACGTGGTCTTACACGTAATCAAATA-CGATGA
* * *
82234187 C-TCTATCCCAGACAG-GGTCTTACACGAAATCAAATACGATGT
1 CAAC-ATCCCAGAC-GTGGTCTTACACGTAATCAAATACGATGA
82234229 CAACATCCCAGACGTGGTCTTACACGTAA
1 CAACATCCCAGACGTGGTCTTACACGTAA
82234258 AATATAAGTC
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
41 1 0.02
42 29 0.49
43 28 0.47
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
CAACATCCCAGACGTGGTCTTACACGTAATCAAATACGATGA
Found at i:82234240 original size:42 final size:43
Alignment explanation
Indices: 82234149--82234254 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
82234139 AATGCCAACG
* * * *
82234149 TCCCACACGTGGTCTTACATGTAATCAAATATCGATGACTCTA
1 TCCCAGACGTGGTCTTACACGAAATCAAATATCGATGACACTA
*
82234192 TCCCAGACAG-GGTCTTACACGAAATCAAATA-CGATGTCAAC-A
1 TCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGAC-ACTA
82234234 TCCCAGACGTGGTCTTACACG
1 TCCCAGACGTGGTCTTACACG
82234255 TAAAATATAA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
41 1 0.02
42 26 0.47
43 27 0.49
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAATCAAATATCGATGACACTA
Found at i:82244300 original size:10 final size:10
Alignment explanation
Indices: 82244285--82244309 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
82244275 GGTTCTTTTA
82244285 ACATATATAT
1 ACATATATAT
82244295 ACATATATAT
1 ACATATATAT
82244305 ACATA
1 ACATA
82244310 CATGTGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (10 bp):
ACATATATAT
Found at i:82246051 original size:28 final size:27
Alignment explanation
Indices: 82245977--82246055 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 27
82245967 GATGTCAAAG
82245977 CTTGTATTCTATTAGTTAAAGGTAAAA
1 CTTGTATTCTATTAGTTAAAGGTAAAA
** * **
82246004 CTTGTATTAAATCACATAAAGTGTAAAA
1 CTTGTATTCTATTAGTTAAAG-GTAAAA
82246032 CTTGTATTCTATTAGTTAAAGGTA
1 CTTGTATTCTATTAGTTAAAGGTA
82246056 TTAAATGGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 19 0.46
28 22 0.54
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (27 bp):
CTTGTATTCTATTAGTTAAAGGTAAAA
Found at i:82251632 original size:31 final size:31
Alignment explanation
Indices: 82251597--82251660 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
82251587 CCTTTTCATG
82251597 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
82251628 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
82251659 TT
1 TT
82251661 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:82251903 original size:24 final size:24
Alignment explanation
Indices: 82251852--82252041 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
82251842 GCTTTATCAT
*
82251852 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
82251877 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
82251901 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
82251924 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
82251948 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
82251972 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
82251995 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
82252019 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82252042 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 46 0.30
24 95 0.62
25 12 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82251951 original size:71 final size:71
Alignment explanation
Indices: 82251851--82252040 Score: 328
Period size: 71 Copynumber: 2.7 Consensus size: 71
82251841 TGCTTTATCA
*
82251851 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
82251915 AGCCCTTT
64 AGCCCTTT
82251923 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
82251988 CCCTTT
66 CCCTTT
* *
82251994 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTT
82252041 TTCACTTCCT
Statistics
Matches: 114, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
71 101 0.89
72 13 0.11
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:82252041 original size:47 final size:47
Alignment explanation
Indices: 82251851--82252041 Score: 278
Period size: 47 Copynumber: 4.0 Consensus size: 47
82251841 TGCTTTATCA
* *
82251851 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT
*
82251899 CAATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
* *
82251946 TAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
82251994 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
82252041 T
1 T
82252042 TCACTTCCTC
Statistics
Matches: 130, Mismatches: 9, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
47 86 0.66
48 32 0.25
49 12 0.09
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:82252116 original size:20 final size:20
Alignment explanation
Indices: 82252091--82252151 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
82252081 TTATGATTAC
82252091 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82252111 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
82252131 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
82252151 A
1 A
82252152 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82252765 original size:24 final size:24
Alignment explanation
Indices: 82252714--82252832 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
82252704 GCTTTATCAT
*
82252714 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
82252739 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
82252763 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
82252786 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
82252810 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82252833 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82252793 original size:47 final size:48
Alignment explanation
Indices: 82252714--82252832 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
82252704 GCTTTATCAT
*
82252714 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
82252763 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
82252810 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82252833 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:82252907 original size:20 final size:20
Alignment explanation
Indices: 82252882--82252942 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
82252872 TTATGATTAC
82252882 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82252902 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
82252922 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
82252942 A
1 A
82252943 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82253017 original size:25 final size:25
Alignment explanation
Indices: 82252985--82253032 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82252975 ATAAATAAAC
* * *
82252985 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82253010 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82253033 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:82253463 original size:791 final size:791
Alignment explanation
Indices: 82251923--82253998 Score: 4077
Period size: 791 Copynumber: 2.6 Consensus size: 791
82251913 TAAGCCCTTT
*
82251923 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
82251986 AGCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCT
65 AGCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCT
82252051 CCATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCAT
130 CCATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCAT
82252116 GTGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAA
195 GTGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAA
*
82252181 ATCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGATCATTTTCATG
260 ATCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATG
82252246 GTATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAAC
325 GTATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAAC
82252311 AATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAAC
390 AATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAAC
82252376 CCCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCAAATCCAATCTCAACATATATTGG
455 CCCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCAAATCCAATCTCAACATATATTGG
82252441 GCCATAGCCCTTTTCATGTTTCATATTCCATAACACTGGGCCGAAGCCTTTTTATATTTCATATT
520 GCCATAGCCCTTTTCATGTTTCATATTCCATAACACTGGGCCGAAGCCTTTTTATATTTCATATT
82252506 ACTGGGCCGAAGCCTTTACTGTAAACGGTATGGCCCTTAGGCCCATTTCAATATCACATATAATT
585 ACTGGGCCGAAGCCTTTACTGTAAACGGTATGGCCCTTAGGCCCATTTCAATATCACATATAATT
*
82252571 TCAATGAAAGAATGCAACCCATTTGGGGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGT
650 TCAATGAAAGAATACAACCCATTTGGGGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGT
82252636 ACCAACCAACACACCATGTGGGGATTAACTCGACCCACCCCGCCATACTCTCCACTGGCAGCATA
715 ACCAACCAACACACCATGTGGGGATTAACTCGACCCACCCCGCCATACTCTCCACTGGCAGCATA
82252701 GCTGCTTTATCA
780 GCTGCTTTATCA
82252713 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
82252778 GCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCTC
66 GCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCTC
82252843 CATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCATG
131 CATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCATG
82252908 TGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAAA
196 TGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAAA
*
82252973 TCATAAATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATGG
261 TCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATGG
82253038 TATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAACA
326 TATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAACA
82253103 ATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAACC
391 ATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAACC
82253168 CCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCAAATCCAATCTCAACATATATTGGG
456 CCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCAAATCCAATCTCAACATATATTGGG
82253233 CCATAGCCCTTTTCATGTTTCATATTCCATAACACTGGGCCGAAGCCTTTTTATATTTCATATTA
521 CCATAGCCCTTTTCATGTTTCATATTCCATAACACTGGGCCGAAGCCTTTTTATATTTCATATTA
82253298 CTGGGCCGAAGCCTTTACTGTAAACGGTATGGCCCTTAGGCCCATTTCAATATCACATATAATTT
586 CTGGGCCGAAGCCTTTACTGTAAACGGTATGGCCCTTAGGCCCATTTCAATATCACATATAATTT
82253363 CAATGAAAGAATACAACCCATTTGGGGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTA
651 CAATGAAAGAATACAACCCATTTGGGGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTA
82253428 CCAACCAACACACCATGTGGGGATTAACTCGACCCACCCCGCCATACTCTCCACTGGCAGCATAG
716 CCAACCAACACACCATGTGGGGATTAACTCGACCCACCCCGCCATACTCTCCACTGGCAGCATAG
82253493 CTGCTTTATCA
781 CTGCTTTATCA
82253504 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
82253569 GCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCTC
66 GCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCTC
82253634 CATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCATG
131 CATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCATG
82253699 TGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAAA
196 TGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAAA
82253764 TCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATGG
261 TCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATGG
82253829 TATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAACA
326 TATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAACA
82253894 ATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAACC
391 ATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAACC
*
82253959 CCTAATGGGCCCTACTTAGCCAATTTCGTCAT-TAGGCCCA
456 CCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCA
82253999 TTTAGCCTAT
Statistics
Matches: 1278, Mismatches: 6, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
790 20 0.02
791 1258 0.98
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (791 bp):
TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTCACTTCCTC
CATCCATATAAAAACCCAACCCAATGCAGTTATGATTACATCATGTGCATATCATACATATCATG
TGCATATCATACATGTCATGTGCATCTCATACATACCATATTTATCAAAATCCCATGTATTAAAA
TCATACATAAACCCTAGGGGTATAATGGTCATTTTTACCTAGGGGCAAAACGGTCATTTTCATGG
TATAAGGGTAATCTCATAATTTTACCAAAAATTAGGGTTTCCATGTTCATTAACGATTACTAACA
ATCCATGGGTGCAAACAGTGATTCTGGCCCATTTTTAGCGAAATCGAGTTATTGGGCCTAAAACC
CCTAATGGGCCCTACTTAGCCAATTTCGTCATCTAAGCCCAAATCCAATCTCAACATATATTGGG
CCATAGCCCTTTTCATGTTTCATATTCCATAACACTGGGCCGAAGCCTTTTTATATTTCATATTA
CTGGGCCGAAGCCTTTACTGTAAACGGTATGGCCCTTAGGCCCATTTCAATATCACATATAATTT
CAATGAAAGAATACAACCCATTTGGGGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTA
CCAACCAACACACCATGTGGGGATTAACTCGACCCACCCCGCCATACTCTCCACTGGCAGCATAG
CTGCTTTATCA
Found at i:82253556 original size:24 final size:24
Alignment explanation
Indices: 82253505--82253623 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
82253495 GCTTTATCAT
*
82253505 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
82253530 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
82253554 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
82253577 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
82253601 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82253624 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:82253584 original size:47 final size:48
Alignment explanation
Indices: 82253505--82253623 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
82253495 GCTTTATCAT
*
82253505 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
82253554 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
82253601 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
82253624 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:82253698 original size:20 final size:20
Alignment explanation
Indices: 82253673--82253733 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
82253663 TTATGATTAC
82253673 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
82253693 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
82253713 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
82253733 A
1 A
82253734 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82253808 original size:25 final size:25
Alignment explanation
Indices: 82253776--82253823 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
82253766 ATACATAAAC
* * *
82253776 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
82253801 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
82253824 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Done.