Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 276 of 345
Found at i:82259190 original size:14 final size:14
Alignment explanation
Indices: 82259171--82259198 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
82259161 TTGAAACTAG
82259171 ATTCATTAAAGTTT
1 ATTCATTAAAGTTT
82259185 ATTCATTAAAGTTT
1 ATTCATTAAAGTTT
82259199 CCCCTGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTCATTAAAGTTT
Found at i:82259895 original size:49 final size:49
Alignment explanation
Indices: 82259820--82260008 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
82259810 GTAGCCGAAG
* *
82259820 TTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * * * * *
82259869 TAATCTGGTACACGTGGTAGCCTGCACTTAGTACTGCACACGTGATCACAG
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
* * *
82259920 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
82259969 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
82260009 CGTGACCTCA
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 75 0.65
50 2 0.02
51 38 0.33
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:82259940 original size:100 final size:100
Alignment explanation
Indices: 82259826--82260013 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
82259816 GAAGTTATCT
* * *
82259826 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTGGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
82259891 TGCACTTAGTACTGCACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
*
82259926 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
82259991 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
82260014 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:82263800 original size:44 final size:41
Alignment explanation
Indices: 82263733--82263878 Score: 141
Period size: 42 Copynumber: 3.4 Consensus size: 41
82263723 TTCCGATATG
*
82263733 TGATTTCGTGTAAGACCACGTCTGGAACGTTGGCATCGATT
1 TGATTTCGTGTAAGACCATGTCTGGAACGTTGGCATCGATT
* * *
82263774 TGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGGAACGTTGGCATCG-ATT
* * * *
82263819 TGATTTTGTGAAAGACCCTGTCTGGAAAG-TGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGAACGTTGGCATCG--ATT
* *
82263861 TGATTACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
82263879 CATCTAGGAT
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 8 0.10
42 34 0.40
43 10 0.12
44 28 0.33
45 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGAACGTTGGCATCGATT
Found at i:82263899 original size:84 final size:86
Alignment explanation
Indices: 82263733--82263900 Score: 200
Period size: 84 Copynumber: 2.0 Consensus size: 86
82263723 TTCCGATATG
* * * **
82263733 TGATTTCGTGTAAGACCACGTCTGGAACGTTGGCATCGATTTGAGATTTACGTGTAAGACCATGT
1 TGATTTCGTGAAAGACCACGTCTGGAAAGTTGGCATCGATTTGAGATTTACATGTAAGACCACAT
*
82263798 CTGGGACATTGGCATTGTATT
66 CTAGGACATTGGCATTGTATT
* *
82263819 TGATTTTGTGAAAGACC-CTGTCTGGAAAG-TGGCATCGATATT-TGA-TTACATGTAAGACCAC
1 TGATTTCGTGAAAGACCAC-GTCTGGAAAGTTGGCATCGAT-TTGAGATTTACATGTAAGACCAC
**
82263880 ATCTAGGATGTTGGCATTGTA
64 ATCTAGGACATTGGCATTGTA
82263901 CGAGCTTTCC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
84 31 0.44
85 13 0.19
86 26 0.37
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (86 bp):
TGATTTCGTGAAAGACCACGTCTGGAAAGTTGGCATCGATTTGAGATTTACATGTAAGACCACAT
CTAGGACATTGGCATTGTATT
Found at i:82266214 original size:23 final size:22
Alignment explanation
Indices: 82266188--82266324 Score: 89
Period size: 23 Copynumber: 6.0 Consensus size: 22
82266178 GAACTCACAA
* *
82266188 CAGCTTGTATGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACT-ATT
82266211 CAGCTCGTAAGAGCTTACTATTT
1 CAGCTCGTAAGAGCTTACTA-TT
* * * **
82266234 TATCTCATTGGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACT-ATT
*
82266257 CAGCTCGAAAGAGCTTACTATT
1 CAGCTCGTAAGAGCTTACTATT
* * *
82266279 CAACTC-AATAGAGCTTACCGTTTT
1 CAGCTCGTA-AGAGCTTA-C-TATT
*
82266303 CAGCTC-AATAGAGCTTACTATT
1 CAGCTCGTA-AGAGCTTACTATT
82266325 TATCAACTCA
Statistics
Matches: 92, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.02
22 20 0.22
23 50 0.54
24 20 0.22
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (22 bp):
CAGCTCGTAAGAGCTTACTATT
Found at i:82266269 original size:46 final size:46
Alignment explanation
Indices: 82266198--82266334 Score: 161
Period size: 46 Copynumber: 2.9 Consensus size: 46
82266188 CAGCTTGTAT
* * * * *
82266198 GAGCTTACTGATTCAGCTCGTAAGAGCTTACTATTTTATCTCATTG
1 GAGCTTACTGATTCAGCTCGAAAGAGCTTACTATTTCAACTCAATA
82266244 GAGCTTACTGATTCAGCTCGAAAGAGCTTACTA-TTCAACTCAATA
1 GAGCTTACTGATTCAGCTCGAAAGAGCTTACTATTTCAACTCAATA
* *
82266289 GAGCTTACCGTTTTCAGCTC-AATAGAGCTTACTATTTATCAACTCA
1 GAGCTTACTG-ATTCAGCTCGAA-AGAGCTTACTA-TT-TCAACTCA
82266335 GGAGGAGCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
45 19 0.24
46 51 0.65
48 1 0.01
49 8 0.10
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
GAGCTTACTGATTCAGCTCGAAAGAGCTTACTATTTCAACTCAATA
Found at i:82266309 original size:24 final size:23
Alignment explanation
Indices: 82266244--82266324 Score: 89
Period size: 22 Copynumber: 3.6 Consensus size: 23
82266234 TATCTCATTG
82266244 GAGCTTA-CTGATTCAGCTCGAA-A
1 GAGCTTACCT-ATTCAGCTC-AATA
*
82266267 GAGCTTA-CTATTCAACTCAATA
1 GAGCTTACCTATTCAGCTCAATA
*
82266289 GAGCTTACCGTTTTCAGCTCAATA
1 GAGCTTACC-TATTCAGCTCAATA
82266313 GAGCTTA-CTATT
1 GAGCTTACCTATT
82266325 TATCAACTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
21 2 0.04
22 19 0.37
23 11 0.22
24 19 0.37
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (23 bp):
GAGCTTACCTATTCAGCTCAATA
Found at i:82273521 original size:2 final size:2
Alignment explanation
Indices: 82273516--82273560 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
82273506 TATATATATA
* *
82273516 TG TG TG TG TG TG TG TG TC TC TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82273558 TG T
1 TG T
82273561 ATACATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.04, G:0.44, T:0.51
Consensus pattern (2 bp):
TG
Found at i:82283396 original size:28 final size:28
Alignment explanation
Indices: 82283329--82283396 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
82283319 ATAGTGAATC
* *
82283329 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATA-TATCAACT
82283358 CGCACACTTAGTGCTATATA-ATCAAACT
1 CGCACACTTAGTGCTATATATATC-AACT
82283386 CGCACACTTAG
1 CGCACACTTAG
82283397 AGCTGTACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.06
28 14 0.39
29 20 0.56
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATATATCAACT
Found at i:82288917 original size:12 final size:12
Alignment explanation
Indices: 82288900--82288925 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82288890 GTCTGTAGTG
82288900 AATGGATTGGGT
1 AATGGATTGGGT
82288912 AATGGATTGGGT
1 AATGGATTGGGT
82288924 AA
1 AA
82288926 GATTCCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (12 bp):
AATGGATTGGGT
Found at i:82290608 original size:6 final size:6
Alignment explanation
Indices: 82290590--82290818 Score: 139
Period size: 6 Copynumber: 37.2 Consensus size: 6
82290580 AAGAAACATT
82290590 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
82290637 GTGACAGA ATCAAA ATCAAA ATCAAA ATCAGA ATCAG- GTGACAGA ATCAAA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * *
82290688 ATCAAA ATCAAA ATCAAA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * * *
82290739 A-CAAA ATCAGA ACCAGA ACCAGA ATCAAA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
82290787 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA A
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA A
82290819 CGTGAATGCA
Statistics
Matches: 181, Mismatches: 22, Indels: 40
0.74 0.09 0.16
Matches are distributed among these distances:
5 11 0.06
6 147 0.81
7 15 0.08
8 8 0.04
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:82290611 original size:18 final size:18
Alignment explanation
Indices: 82290590--82290818 Score: 139
Period size: 19 Copynumber: 12.4 Consensus size: 18
82290580 AAGAAACATT
82290590 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
82290608 ATCAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAGA
*
82290626 ATCAGAATCAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGA
* * *
82290645 ATCAAAATCAAAATCAAA
1 ATCAGAATCAGAATCAGA
*
82290663 ATCAGAATCAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGA
* * *
82290682 ATCAAAATCAAAATCAAA
1 ATCAGAATCAGAATCAGA
* *
82290700 ATCAAAATTAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
*
82290719 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
* *
82290739 A-CAAAATCAGAACCAGA
1 ATCAGAATCAGAATCAGA
* * *
82290756 ACCAGAATCAAAATTAGGTA
1 ATCAGAATCAGAATCA-G-A
*
82290776 A-CAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
82290793 ATCAGGTAA-CAGAATCAGA
1 ATCA-G-AATCAGAATCAGA
82290812 ATCAGAA
1 ATCAGAA
82290819 CGTGAATGCA
Statistics
Matches: 163, Mismatches: 30, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
17 8 0.05
18 69 0.42
19 76 0.47
20 10 0.06
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:82290654 original size:37 final size:37
Alignment explanation
Indices: 82290604--82290728 Score: 187
Period size: 37 Copynumber: 3.4 Consensus size: 37
82290594 GAACTAGAAT
* * *
82290604 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAAAATCAAAATCAAAATCAGAATCAGGTGA
82290641 CAGAATCAAAATCAAAATCAAAATCAGAATCAGGTGA
1 CAGAATCAAAATCAAAATCAAAATCAGAATCAGGTGA
* * *
82290678 CAGAATCAAAATCAAAATCAAAATCAAAATTAGGTAA
1 CAGAATCAAAATCAAAATCAAAATCAGAATCAGGTGA
*
82290715 CAGAATCAGAATCA
1 CAGAATCAAAATCA
82290729 GTATCAGGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.53, C:0.16, G:0.14, T:0.17
Consensus pattern (37 bp):
CAGAATCAAAATCAAAATCAAAATCAGAATCAGGTGA
Found at i:82290748 original size:25 final size:25
Alignment explanation
Indices: 82290690--82290750 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
82290680 GAATCAAAAT
* *
82290690 CAAAATCAAAATCAAAATTAGGTAA
1 CAAAATCAGAATCAAAATCAGGTAA
* **
82290715 CAGAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAAAATCAGGTAA
82290740 CAAAATCAGAA
1 CAAAATCAGAA
82290751 CCAGAACCAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.54, C:0.15, G:0.13, T:0.18
Consensus pattern (25 bp):
CAAAATCAGAATCAAAATCAGGTAA
Found at i:82290756 original size:37 final size:37
Alignment explanation
Indices: 82290715--82290797 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
82290705 AATTAGGTAA
**
82290715 CAGAATCAGAATCAGTATCAGGTAACAAAATCAGAAC
1 CAGAATCAGAATCAAAATCAGGTAACAAAATCAGAAC
* * * *
82290752 CAGAACCAGAATCAAAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAAAATCAGGTAACAAAATCAGAAC
*
82290789 CAGTATCAG
1 CAGAATCAG
82290798 GTAACAGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAATCAAAATCAGGTAACAAAATCAGAAC
Found at i:82290786 original size:25 final size:25
Alignment explanation
Indices: 82290740--82290815 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
82290730 TATCAGGTAA
*
82290740 CAAAATCA-G-AACCAGAACCAGAAT
1 CAAAATCAGGTAA-CAGAATCAGAAT
*
82290764 CAAAATTAGGTAACAGAATCAGAAT
1 CAAAATCAGGTAACAGAATCAGAAT
**
82290789 CAGTATCAGGTAACAGAATCAGAAT
1 CAAAATCAGGTAACAGAATCAGAAT
82290814 CA
1 CA
82290816 GAACGTGAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 7 0.16
25 36 0.80
26 2 0.04
ACGTcount: A:0.50, C:0.18, G:0.16, T:0.16
Consensus pattern (25 bp):
CAAAATCAGGTAACAGAATCAGAAT
Found at i:82290816 original size:25 final size:25
Alignment explanation
Indices: 82290752--82290818 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
82290742 AAATCAGAAC
* * *
82290752 CAGAACCAGAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82290777 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
82290802 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
82290819 CGTGAATGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:82290818 original size:62 final size:62
Alignment explanation
Indices: 82290656--82290819 Score: 247
Period size: 62 Copynumber: 2.6 Consensus size: 62
82290646 TCAAAATCAA
* * * * * *
82290656 AATCAAAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAAAATCAAAATTAGGTAACAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAACAG
* * *
82290718 AATCAGAATCAGTATCAGGTAACAAAATCAGAACCAGAACCAGAATCAAAATTAGGTAACAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAACAG
82290780 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
82290820 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 91 1.00
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.17
Consensus pattern (62 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAAAATCAAAATTAGGTAACAG
Found at i:82290986 original size:27 final size:26
Alignment explanation
Indices: 82290938--82290997 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
82290928 GCGAGGCTGC
*
82290938 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82290965 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
82290991 CAAATAT
1 CAGATAT
82290998 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82291353 original size:27 final size:28
Alignment explanation
Indices: 82291323--82291381 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
82291313 AGCACCCTAG
82291323 GGGTAAAAT-GGTAATTTTACCCCACAA
1 GGGTAAAATCGGTAATTTTACCCCACAA
** * *
82291350 GGGT-ATCTCGGTAATTTTACCCTACAG
1 GGGTAAAATCGGTAATTTTACCCCACAA
82291377 GGGTA
1 GGGTA
82291382 TTTCAGTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (28 bp):
GGGTAAAATCGGTAATTTTACCCCACAA
Found at i:82291382 original size:27 final size:27
Alignment explanation
Indices: 82291332--82291583 Score: 251
Period size: 27 Copynumber: 9.3 Consensus size: 27
82291322 GGGGTAAAAT
* * *
82291332 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
82291359 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
82291386 AGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
82291413 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* * * *
82291440 GGTAATTCTACCTTACAGAGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * * *
82291467 AGTAATTCTACGCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
82291494 GGT-ATTTCTACCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAGGGGTATTTC
**
82291521 GGT-ATTTCTACCCTACAAAGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
82291548 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
82291575 GATAATTTT
1 GGTAATTTT
82291584 GTAAATTGAG
Statistics
Matches: 190, Mismatches: 31, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.03
27 177 0.93
28 7 0.04
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:82291475 original size:81 final size:80
Alignment explanation
Indices: 82291336--82291575 Score: 304
Period size: 81 Copynumber: 3.0 Consensus size: 80
82291326 TAAAATGGTA
* * * * *
82291336 ATTT-TACCCCACAAGGGTATCTCGGTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACCCT
82291400 ACAGGGATATTTCGGT
66 ACAGGG-TATTTCGGT
* *
82291416 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGAGGTATTTTAGTAATTCTACGCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACCCT
*
82291481 ATAGGGGTATTTCGGT
66 ACA-GGGTATTTCGGT
* * * * * *
82291497 ATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAAGGTA-TTTCGATATTTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTTAG-TAATTCTACCC
82291561 TACAAGGGTATTTCG
65 TAC-AGGGTATTTCG
82291576 ATAATTTTGT
Statistics
Matches: 139, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
80 8 0.06
81 127 0.91
82 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACCCT
ACAGGGTATTTCGGT
Found at i:82291595 original size:27 final size:27
Alignment explanation
Indices: 82291565--82291775 Score: 108
Period size: 27 Copynumber: 7.8 Consensus size: 27
82291555 CTACCCTACA
**
82291565 AGGGTATTTCGATAATTTTGTAAATTG
1 AGGGTATTTCGATAATTTTACAAATTG
*** * ** *
82291592 AGGGTAAAACGGTAATTTTGTAAA-TC
1 AGGGTATTTCGATAATTTTACAAATTG
* * *
82291618 AGGGGTACTTT-GGTAATTTTACAAGTCG
1 A-GGGTA-TTTCGATAATTTTACAAATTG
* **
82291646 AGGGTATTTCAATAATTTTACAGGTTG
1 AGGGTATTTCGATAATTTTACAAATTG
* *
82291673 AGGGTATTTC-AGTAATTTCACAAA-TC
1 AGGGTATTTCGA-TAATTTTACAAATTG
* * *
82291699 AGGGGTATTTTGGTAATTTTACAAACT-
1 A-GGGTATTTCGATAATTTTACAAATTG
* ***
82291726 AGGGGTATTTTGATAATTTTACAAACCA
1 A-GGGTATTTCGATAATTTTACAAATTG
* *
82291754 AGGGTATTTTGGTAATTTTACA
1 AGGGTATTTCGATAATTTTACA
82291776 GACCAGGGGT
Statistics
Matches: 148, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
26 8 0.05
27 137 0.93
28 3 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATTG
Found at i:82291653 original size:81 final size:80
Alignment explanation
Indices: 82291565--82291826 Score: 218
Period size: 81 Copynumber: 3.2 Consensus size: 80
82291555 CTACCCTACA
** * ***
82291565 AGGGTATTTCGATAATTTTGTAAATTGAGGGTAAAACGGTAATTTTGTAAATCAGGGGTACTTTG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
*
82291630 GTAATTTTACAAGTCG
66 GTAATTTTACAA-ACG
* ** *** *
82291646 AGGGTATTTCAATAATTTTACAGGTTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
*
82291711 GTAATTTTACAAACT
66 GTAATTTTACAAACG
* *** ***** * * * *
82291726 AGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAGACCAGGGGTATTTT
1 A-GGGTATTTCGATAATTTTACAAATTGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTT
*
82291791 GGTAATTTTACAAACC
65 GGTAATTTTACAAACG
* *
82291807 AGGGGTATTTTGGTAATTTT
1 A-GGGTATTTCGATAATTTT
82291827 GTAAACTAAG
Statistics
Matches: 151, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
80 2 0.01
81 149 0.99
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATTGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
GTAATTTTACAAACG
Found at i:82291716 original size:54 final size:54
Alignment explanation
Indices: 82291673--82292095 Score: 632
Period size: 54 Copynumber: 7.8 Consensus size: 54
82291663 TTACAGGTTG
* * * * *
82291673 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
82291727 GGGGTATTTT-GATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAGACCA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
82291781 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
82291835 AGAGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
82291889 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
82291943 AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
82291997 AGGGTATTTTGGTAATTTTACAAACCAGGGGTCTTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
82292051 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
82292096 GGTAAAGTAA
Statistics
Matches: 335, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 333 0.99
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:82291780 original size:27 final size:27
Alignment explanation
Indices: 82291674--82292095 Score: 574
Period size: 27 Copynumber: 15.6 Consensus size: 27
82291664 TACAGGTTGA
** * *
82291674 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82291701 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82291728 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82291755 GGGTATTTTGGTAATTTTACAGACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
82291782 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
82291809 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82291836 GAGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82291863 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82291890 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82291917 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82291944 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
82291971 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
82291998 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
82292025 GGGTCTTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82292052 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
82292079 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
82292096 GGTAAAGTAA
Statistics
Matches: 341, Mismatches: 54, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 341 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82301887 original size:12 final size:12
Alignment explanation
Indices: 82301870--82301896 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82301860 AAACTCTGAG
82301870 ATATCACTTTTC
1 ATATCACTTTTC
82301882 ATATCACTTTTC
1 ATATCACTTTTC
82301894 ATA
1 ATA
82301897 CCATTCCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATCACTTTTC
Found at i:82305130 original size:37 final size:37
Alignment explanation
Indices: 82305080--82305165 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
82305070 TTATTACGAA
82305080 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
82305117 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
82305154 GTCTCACCCGGA
1 GTCTTACCCGGA
82305166 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:82305297 original size:48 final size:48
Alignment explanation
Indices: 82305214--82305529 Score: 515
Period size: 48 Copynumber: 6.6 Consensus size: 48
82305204 ACAACATTCT
* * * * *
82305214 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
82305262 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
82305310 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
*
82305358 CATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
*
82305406 CATTAGCCATTCGGCTTTACCACATATACATATCACAGATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
82305454 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
82305502 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
82305530 TACACTTTCA
Statistics
Matches: 251, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 251 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:82305574 original size:46 final size:47
Alignment explanation
Indices: 82305507--82305628 Score: 210
Period size: 46 Copynumber: 2.6 Consensus size: 47
82305497 TTTCACATTA
* * *
82305507 GCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACAT-G
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
82305553 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
82305600 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTATCACATATATACACT
82305629 ACGAGCTGTT
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 42 0.58
47 30 0.42
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:82305579 original size:96 final size:95
Alignment explanation
Indices: 82305214--82305575 Score: 445
Period size: 96 Copynumber: 3.8 Consensus size: 95
82305204 ACAACATTCT
* * *
82305214 CATTAGCCATTCGGCTTTACCACATAT-T-CATATCTCATACGCATTTCACATTCGCCATTCGGC
1 CATTAGCCATTCGGCTTTACCACATATATACATATCACAT--GTA-TTCACATTAGCCATTCGGC
* * * *
82305277 TTTACGACATATACACATCTCATATATATTTCA
63 TTTACCACATATACATATCACACATATATTTCA
82305310 CATTAGCCATTCGGCTTTACCAC--ATATACATATCACACATGTATTTCACATTAGCCATTCGGC
1 CATTAGCCATTCGGCTTTACCACATATATACATAT--CACATGTA-TTCACATTAGCCATTCGGC
82305373 TTTACCACATATACATATCACACATATATTTCA
63 TTTACCACATATACATATCACACATATATTTCA
82305406 CATTAGCCATTCGGCTTTACCAC--ATATACATATCACAGATGTATTTCACATTAGCCATTCGGC
1 CATTAGCCATTCGGCTTTACCACATATATACATATCAC--ATGTA-TTCACATTAGCCATTCGGC
*
82305469 TTTACCACATATACATATCACACATGTATTTCA
63 TTTACCACATATACATATCACACATATATTTCA
* * * *
82305502 CATTAGCCATTCGGCTTTACCACATATATACACTTTCACAT-TCA-TCACA-TGGCCATTAGGCC
1 CATTAGCCATTCGGCTTTACCACATATATACA-TATCACATGT-ATTCACATTAGCCATTCGGCT
*
82305564 TTATCACATATA
64 TTACCACATATA
82305576 TACACTTTCA
Statistics
Matches: 243, Mismatches: 13, Indels: 22
0.87 0.05 0.08
Matches are distributed among these distances:
94 26 0.11
95 6 0.02
96 192 0.79
97 3 0.01
98 11 0.05
99 5 0.02
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (95 bp):
CATTAGCCATTCGGCTTTACCACATATATACATATCACATGTATTCACATTAGCCATTCGGCTTT
ACCACATATACATATCACACATATATTTCA
Found at i:82305579 original size:144 final size:143
Alignment explanation
Indices: 82305214--82305575 Score: 462
Period size: 144 Copynumber: 2.5 Consensus size: 143
82305204 ACAACATTCT
* * * ** * * *
82305214 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCAT-TTCACATTCGCCATTCGGCT
1 CATTAGCCATTCGGCTTTACCACATATACACA--TCACACATATATTCACATTAGCCATTAGGCC
* * *
82305278 TTACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
64 TTACCACATATACACATCACAGATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
82305343 CACACATGTATTTCA
129 CACACATGTATTTCA
* * *
82305358 CATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCACATATACACATCACACATATA-TTCACATTAGCCATTAGGCCT
* *
82305423 TACCACATATACATATCACAGATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
65 TACCACATATACACATCACAGATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
82305488 ACACATGTATTTCA
130 ACACATGTATTTCA
* ** *
82305502 CATTAGCCATTCGGCTTTACCACATATATACACTTTCACAT-TCA-TCACA-TGGCCATTAGGCC
1 CATTAGCCATTCGGCTTTACCACATATACACA-TCACACATAT-ATTCACATTAGCCATTAGGCC
*
82305564 TTATCACATATA
64 TTACCACATATA
82305576 TACACTTTCA
Statistics
Matches: 196, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
142 28 0.14
143 5 0.03
144 156 0.80
145 7 0.04
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (143 bp):
CATTAGCCATTCGGCTTTACCACATATACACATCACACATATATTCACATTAGCCATTAGGCCTT
ACCACATATACACATCACAGATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
CACATGTATTTCA
Found at i:82317764 original size:49 final size:49
Alignment explanation
Indices: 82317695--82318131 Score: 714
Period size: 49 Copynumber: 9.1 Consensus size: 49
82317685 GTACATAATA
*
82317695 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
82317744 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
82317793 ATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
82317842 ATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
82317891 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
82317940 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
82317989 ATATATGTG---A----TAA-GGCC--TGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
82318028 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
82318077 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
82318126 ATATAT
1 ATATAT
82318132 ATGTGGTAAA
Statistics
Matches: 363, Mismatches: 15, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
39 30 0.08
41 4 0.01
42 4 0.01
46 4 0.01
47 4 0.01
49 317 0.87
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:82318018 original size:88 final size:88
Alignment explanation
Indices: 82317918--82318094 Score: 318
Period size: 88 Copynumber: 2.0 Consensus size: 88
82317908 TAATGGCCGA
82317918 TGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
*
82317983 GTGTATATATATGTGATAAGGCC
66 ATGTATATATATGTGATAAGGCC
* * *
82318006 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
82318071 ATGTATATATATGTGATAAGGCC
66 ATGTATATATATGTGATAAGGCC
82318094 T
1 T
82318095 AATGGCCGAC
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (88 bp):
TGTGATGAATGTGAAAATATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
ATGTATATATATGTGATAAGGCC
Found at i:82318022 original size:39 final size:39
Alignment explanation
Indices: 82317968--82318045 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
82317958 AATGGCCGAC
82317968 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
82318007 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
82318046 AATGGCCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:82318255 original size:37 final size:37
Alignment explanation
Indices: 82318214--82318286 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
82318204 TTCCAGGTGA
*
82318214 GACCCAATGACTACGTGTGGAGGTTATGTCCGGGTAC
1 GACCCAATGACTACGTGTGGAGATTATGTCCGGGTAC
*
82318251 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCAATGACTACGTGTGGAGATTATGTCCGGGTA
82318287 AGACTTCGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
GACCCAATGACTACGTGTGGAGATTATGTCCGGGTAC
Found at i:82324599 original size:28 final size:28
Alignment explanation
Indices: 82324568--82324634 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
82324558 TTTATATTTT
82324568 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
82324596 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
82324624 GTACACTAAGT
1 GCACACTAAGT
82324635 ACCATATTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:82332714 original size:28 final size:28
Alignment explanation
Indices: 82332646--82332724 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
82332636 GAATCATTTG
* *
82332646 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
82332674 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
82332702 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
82332725 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:82337602 original size:27 final size:27
Alignment explanation
Indices: 82337572--82337644 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
82337562 GGGTGTGGTG
* *
82337572 CCTATCTGATATGCGGCACCAGTGACC
1 CCTATCTAATAGGCGGCACCAGTGACC
82337599 CCTATCTAATAGGCGGCACCAGTGACC
1 CCTATCTAATAGGCGGCACCAGTGACC
82337626 CCTATCTAATAGGCGGCAC
1 CCTATCTAATAGGCGGCAC
82337645 TACTATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.21
Consensus pattern (27 bp):
CCTATCTAATAGGCGGCACCAGTGACC
Found at i:82341290 original size:49 final size:49
Alignment explanation
Indices: 82341164--82341421 Score: 389
Period size: 49 Copynumber: 5.3 Consensus size: 49
82341154 CCCTTCGGGA
* * * * * *
82341164 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82341211 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82341258 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82341307 CTTATCACATATATACACACTTGCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82341356 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82341405 CTTATCACATATGTATA
1 CTTATCACATATATATA
82341422 TCTCATACAT
Statistics
Matches: 194, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 45 0.23
49 148 0.76
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82343063 original size:40 final size:40
Alignment explanation
Indices: 82343018--82343184 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
82343008 CGGAATATAA
82343018 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82343058 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82343098 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82343138 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82343177 CCGGATAT
1 CCGGATAT
82343185 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82351064 original size:40 final size:40
Alignment explanation
Indices: 82351019--82351185 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
82351009 CGGAATATAA
82351019 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82351059 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
82351099 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82351139 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
82351178 CCGGATAT
1 CCGGATAT
82351186 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82359861 original size:47 final size:46
Alignment explanation
Indices: 82359755--82359880 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
82359745 TCGATGCCGA
* * * *
82359755 TGCCGATGCATGTCCCAGACGTGCCTTACTCTGGCACTCATCTCTG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTG
* *
82359801 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATCTG
* *
82359848 TGGCCGAAGCATGTCTCAGACATGTCTTACACT
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT
82359881 AGCGCACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 18 0.26
47 29 0.42
48 22 0.32
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTG
Found at i:82361696 original size:30 final size:30
Alignment explanation
Indices: 82361660--82361760 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82361650 GACAAGATTG
* * *
82361660 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82361690 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82361718 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82361747 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82361761 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82361772 original size:29 final size:28
Alignment explanation
Indices: 82361689--82361764 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82361679 AAAATTGTAC
* *
82361689 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82361717 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82361746 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82361765 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82369549 original size:30 final size:30
Alignment explanation
Indices: 82369513--82369613 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82369503 GACAAGATTG
* * *
82369513 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82369543 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82369571 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82369600 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82369614 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82369625 original size:29 final size:28
Alignment explanation
Indices: 82369542--82369617 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82369532 AAAATTGTAC
* *
82369542 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82369570 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82369599 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82369618 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82381169 original size:30 final size:30
Alignment explanation
Indices: 82381133--82381233 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82381123 GACAAGATTG
* * *
82381133 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82381163 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
82381191 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
82381220 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82381234 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:82381245 original size:29 final size:28
Alignment explanation
Indices: 82381162--82381237 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
82381152 AAAATTGTAC
* *
82381162 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
82381190 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
82381219 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
82381238 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:82384743 original size:48 final size:48
Alignment explanation
Indices: 82384673--82384878 Score: 299
Period size: 48 Copynumber: 4.3 Consensus size: 48
82384663 TATGTAATCC
* * * *
82384673 AATGTACCTAATTTAAATTACAAAGTTTGTT-CATCGTTTTAATGTTGT
1 AATGTATCTAATTTATACTACAAAGTTTGTTCCA-AGTTTTAATGTTGT
82384721 AATGTATCTAATTTATACTACAAAGTTTGTTCCAAGTTTTAATGTTGT
1 AATGTATCTAATTTATACTACAAAGTTTGTTCCAAGTTTTAATGTTGT
*
82384769 AATGTATCTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGT
1 AATGTATCTAATTTATACTACAAAGTTTGTTCCAAGTTTTAATGTTGT
* * *
82384817 AATGTATCTAATTTATGACCACAAAGTTTGTTCCAAGTTTTAATATTGC
1 AATGTATCTAATTTAT-ACTACAAAGTTTGTTCCAAGTTTTAATGTTGT
82384866 AAT-TAATCTAATT
1 AATGT-ATCTAATT
82384879 AAATAAATAC
Statistics
Matches: 146, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
48 105 0.72
49 41 0.28
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.45
Consensus pattern (48 bp):
AATGTATCTAATTTATACTACAAAGTTTGTTCCAAGTTTTAATGTTGT
Found at i:82385198 original size:33 final size:33
Alignment explanation
Indices: 82385140--82385202 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
82385130 TGAACTTGAG
* **
82385140 CCGGGAGGAGTGGAGTACTGTGGTGGATACGAC
1 CCGGGAGGAGTGGAGTAATACGGTGGATACGAC
82385173 CCGGGAGGAGTGGAGTAATACGGTGGATAC
1 CCGGGAGGAGTGGAGTAATACGGTGGATAC
82385203 AGGCCTAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.44, T:0.17
Consensus pattern (33 bp):
CCGGGAGGAGTGGAGTAATACGGTGGATACGAC
Found at i:82385870 original size:14 final size:14
Alignment explanation
Indices: 82385839--82385872 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82385829 AAATTACATG
* *
82385839 TTAGAATAGTATCG
1 TTAGAATAGTACCA
82385853 TTAGAATAGTACCA
1 TTAGAATAGTACCA
82385867 TTAGAA
1 TTAGAA
82385873 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (14 bp):
TTAGAATAGTACCA
Found at i:82387567 original size:49 final size:49
Alignment explanation
Indices: 82387503--82387670 Score: 291
Period size: 49 Copynumber: 3.4 Consensus size: 49
82387493 ACATGCCAAG
*
82387503 TAAATTATATAAAAAAATAAATCTAATAAACCTAAAACACATATGACAAA
1 TAAATTACAT-AAAAAATAAATCTAATAAACCTAAAACACATATGACAAA
* *
82387553 TAAATTACATAAAAATTAAATCTAATAAACCTAAAACACACATGACAAA
1 TAAATTACATAAAAAATAAATCTAATAAACCTAAAACACATATGACAAA
*
82387602 TAAATTACATAAAAAATAAATCTAGTAAACCTAAAACACATATGACAAA
1 TAAATTACATAAAAAATAAATCTAATAAACCTAAAACACATATGACAAA
82387651 TAAATTACATAAAAAATAAA
1 TAAATTACATAAAAAATAAA
82387671 ACATTCTTTC
Statistics
Matches: 112, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 103 0.92
50 9 0.08
ACGTcount: A:0.61, C:0.13, G:0.02, T:0.23
Consensus pattern (49 bp):
TAAATTACATAAAAAATAAATCTAATAAACCTAAAACACATATGACAAA
Found at i:82387984 original size:29 final size:30
Alignment explanation
Indices: 82387951--82388007 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
82387941 ACCTCTTAAT
* *
82387951 TAATTTTTT-TCAAATCCTAAACACAACCC
1 TAATTTTTTCTCAAAACCCAAACACAACCC
82387980 TAATTTTTTCTCAAAACCCAAACACAAC
1 TAATTTTTTCTCAAAACCCAAACACAAC
82388008 TTCTTCTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATTTTTTCTCAAAACCCAAACACAACCC
Found at i:82389004 original size:31 final size:30
Alignment explanation
Indices: 82388957--82389073 Score: 98
Period size: 31 Copynumber: 3.9 Consensus size: 30
82388947 TTAATATAAC
* * **
82388957 ATTTTGTATCTGAACTTGACATTTTTTTTTA
1 ATTTGGTATCTAAACTTGAC-TTTTTTCCTA
*
82388988 ATTTGGTATCTAAACTT--TTTTTTATCC-A
1 ATTTGGTATCTAAACTTGACTTTTT-TCCTA
*
82389016 ATTTGGTA-CTCAAACTTGACACTTTTTCCTA
1 ATTTGGTATCT-AAACTTGAC-TTTTTTCCTA
* *
82389047 ATATGGTACCTAAACTTGACTTTTTTC
1 ATTTGGTATCTAAACTTGACTTTTTTC
82389074 TTAAGTTGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
27 2 0.03
28 20 0.29
29 1 0.01
30 9 0.13
31 36 0.51
32 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.50
Consensus pattern (30 bp):
ATTTGGTATCTAAACTTGACTTTTTTCCTA
Found at i:82393021 original size:14 final size:14
Alignment explanation
Indices: 82392994--82393026 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82392984 CAGAGCAGAC
82392994 CTTCCCAAACATGG
1 CTTCCCAAACATGG
82393008 CTTCACCAAA-ATGG
1 CTTC-CCAAACATGG
82393022 CTTCC
1 CTTCC
82393027 ATTCACTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.06
14 12 0.67
15 5 0.28
ACGTcount: A:0.27, C:0.36, G:0.12, T:0.24
Consensus pattern (14 bp):
CTTCCCAAACATGG
Found at i:82395960 original size:22 final size:25
Alignment explanation
Indices: 82395932--82395981 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
82395922 CTAAAGATAT
*
82395932 ATTAATAT-ATACAATATT-T-TAG
1 ATTAATATAATAAAATATTATATAG
82395954 ATTAATATAATAAAATATTATATAG
1 ATTAATATAATAAAATATTATATAG
82395979 ATT
1 ATT
82395982 TAAAATTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 8 0.33
23 9 0.38
24 1 0.04
25 6 0.25
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (25 bp):
ATTAATATAATAAAATATTATATAG
Found at i:82406192 original size:18 final size:18
Alignment explanation
Indices: 82406169--82406203 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82406159 GAGTTAAACA
*
82406169 AATCGAGTTATTTGAGTT
1 AATCGAGTTATTCGAGTT
82406187 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
82406204 CAACTCGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:82409438 original size:25 final size:24
Alignment explanation
Indices: 82409410--82409460 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
82409400 TTTTGAGTAA
*
82409410 TTTAATTTTTTTTATTTTATGTTCT
1 TTTAATTTTCTTTATTTT-TGTTCT
* *
82409435 TTTAATTTTCTTTCTTTTTTTTCT
1 TTTAATTTTCTTTATTTTTGTTCT
82409459 TT
1 TT
82409461 ATCTTCCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (24 bp):
TTTAATTTTCTTTATTTTTGTTCT
Found at i:82409603 original size:6 final size:7
Alignment explanation
Indices: 82409585--82409610 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
82409575 GAATAATTTA
82409585 ATTTTTT
1 ATTTTTT
82409592 ATTTTTT
1 ATTTTTT
82409599 ATTTTTT
1 ATTTTTT
82409606 ATTTT
1 ATTTT
82409611 CCTTTTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
ATTTTTT
Found at i:82416766 original size:21 final size:21
Alignment explanation
Indices: 82416740--82416781 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
82416730 TAACCATCTG
82416740 ACCATCACATGAGATTTTATT
1 ACCATCACATGAGATTTTATT
82416761 ACCATCACATGAGATTTTATT
1 ACCATCACATGAGATTTTATT
82416782 TCAATGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
ACCATCACATGAGATTTTATT
Found at i:82416803 original size:2 final size:2
Alignment explanation
Indices: 82416796--82416821 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82416786 TGTGATAAGA
82416796 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82416822 GAAAACACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82426693 original size:4 final size:4
Alignment explanation
Indices: 82426684--82426795 Score: 61
Period size: 4 Copynumber: 28.0 Consensus size: 4
82426674 CTTTAATCCT
* * *
82426684 TTTA TTTA TTTA TTTA TTTA CTTA TTTA CTTGA -TTA TTTA TTCA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
* * * * * * *
82426731 TTCT- TTTCA TTTTA CTCA TTTA TTTG TTTA CTTA TTTA TTCA TATA -TCA
1 TT-TA TTT-A -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
82426780 TTCA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA
82426796 CCTTTTATTT
Statistics
Matches: 80, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
3 6 0.08
4 66 0.82
5 5 0.06
6 3 0.04
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (4 bp):
TTTA
Found at i:82426988 original size:3 final size:3
Alignment explanation
Indices: 82426982--82427055 Score: 123
Period size: 3 Copynumber: 24.7 Consensus size: 3
82426972 GCATATACAT
82426982 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
82427030 TTA TT- TTA TCTA TTA TCA TTA TTA TT
1 TTA TTA TTA T-TA TTA TTA TTA TTA TT
82427056 GTCCACTCAT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 62 0.93
4 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:82431093 original size:2 final size:2
Alignment explanation
Indices: 82431086--82431122 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
82431076 TAGTCATCTA
82431086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82431123 AAAGAATCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82436559 original size:29 final size:30
Alignment explanation
Indices: 82436499--82436559 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
82436489 AACTAATTAA
*
82436499 TTAATTTAACCTAAAATAACCTAATGGAAT
1 TTAATTTAACCTAAAATAACCTAATAGAAT
* *
82436529 TTAA-TTAACCTAAGATATCCTAATAGAAT
1 TTAATTTAACCTAAAATAACCTAATAGAAT
82436558 TT
1 TT
82436560 CCGATTCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (30 bp):
TTAATTTAACCTAAAATAACCTAATAGAAT
Found at i:82440023 original size:27 final size:27
Alignment explanation
Indices: 82439983--82440110 Score: 130
Period size: 27 Copynumber: 4.7 Consensus size: 27
82439973 TTATCTGACT
* * *
82439983 GTAATACCCTTGTAGGGTAAAATGATC
1 GTAATACCCCTGTAGGGTAAAATAACC
*
82440010 GTAATACCCCTGTAGGCTAAAATAACC
1 GTAATACCCCTGTAGGGTAAAATAACC
* * * *
82440037 ATAATAACCCTATAAGGTAAAATAACC
1 GTAATACCCCTGTAGGGTAAAATAACC
* * *
82440064 GTAATGCCCCTGTAGGGTAAAATGATC
1 GTAATACCCCTGTAGGGTAAAATAACC
* * *
82440091 GTAATGCCCTTGCAGGGTAA
1 GTAATACCCCTGTAGGGTAA
82440111 TATGGCGATT
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAATACCCCTGTAGGGTAAAATAACC
Found at i:82446515 original size:27 final size:27
Alignment explanation
Indices: 82446476--82446548 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
82446466 GGTTGTTATC
82446476 TGATCGTAATACCTCTGTAGGGTAAAA
1 TGATCGTAATACCTCTGTAGGGTAAAA
*
82446503 TGATCGTATTACC-CTTGTAGGGTAAAA
1 TGATCGTAATACCTC-TGTAGGGTAAAA
*
82446530 TGACCGTAATACCTCTGTA
1 TGATCGTAATACCTCTGTA
82446549 TGTTAATATG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (27 bp):
TGATCGTAATACCTCTGTAGGGTAAAA
Found at i:82446778 original size:27 final size:26
Alignment explanation
Indices: 82446696--82446779 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 26
82446686 ATGGAGGAAG
* *
82446696 TACTATACTGGTGACTATGTCACATT
1 TACTATACTGGTGGCTATGCCACATT
* * * *
82446722 CACTGTTACTGGTGGCTATGCCATAAT
1 TACT-ATACTGGTGGCTATGCCACATT
*
82446749 TACTAATACTGGTGGCTTTGCCACATT
1 TACT-ATACTGGTGGCTATGCCACATT
82446776 TACT
1 TACT
82446780 GTTCTGGCAA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
26 3 0.07
27 42 0.93
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (26 bp):
TACTATACTGGTGGCTATGCCACATT
Found at i:82448725 original size:40 final size:40
Alignment explanation
Indices: 82448598--82448727 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
82448588 ATGCTGGAAA
* * * *
82448598 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
82448638 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
* *
82448678 TTCTATCCAGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
82448718 TTATATCCGG
1 TTATATCCGG
82448728 TTATATTCCG
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:82454344 original size:13 final size:13
Alignment explanation
Indices: 82454328--82454362 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
82454318 AATAAAATAA
82454328 TAAAATATTTTAT
1 TAAAATATTTTAT
*
82454341 TAAAATATCTTAT
1 TAAAATATTTTAT
82454354 TAAAATATT
1 TAAAATATT
82454363 AATAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (13 bp):
TAAAATATTTTAT
Found at i:82455653 original size:26 final size:26
Alignment explanation
Indices: 82455624--82455692 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 26
82455614 ATCTACCTTT
82455624 ACATAGCTTGATACAATGACAACTTC
1 ACATAGCTTGATACAATGACAACTTC
*
82455650 ACATAGCTTGA-A-TA-GAC--CTTC
1 ACATAGCTTGATACAATGACAACTTC
82455671 ACATAGCTTGATACAATGACAA
1 ACATAGCTTGATACAATGACAA
82455693 GTCTTGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
21 15 0.42
22 1 0.03
23 4 0.11
24 4 0.11
25 1 0.03
26 11 0.31
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (26 bp):
ACATAGCTTGATACAATGACAACTTC
Found at i:82470771 original size:2 final size:2
Alignment explanation
Indices: 82470764--82470792 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82470754 TAACTTCGGC
82470764 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82470793 GTGGCACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82471360 original size:2 final size:2
Alignment explanation
Indices: 82471353--82471404 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
82471343 TGATTATGTG
82471353 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
82471395 TA TA CA TA TA
1 TA TA TA TA TA
82471405 GCTTGTGTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:82479827 original size:19 final size:18
Alignment explanation
Indices: 82479803--82479886 Score: 61
Period size: 19 Copynumber: 4.7 Consensus size: 18
82479793 AAAGAACTTA
82479803 TTATAAATTTTTATAATAT
1 TTATAAATTTTTA-AATAT
* *
82479822 TTATAACTTTTTATGA-AT
1 TTATAAATTTTTA-AATAT
* *
82479840 TT-T--ATTTTTAGATGT
1 TTATAAATTTTTAAATAT
82479855 TTATATAATTTTTAATATAT
1 TTATA-AATTTTTAA-ATAT
82479875 TTAT-AATTTTTA
1 TTATAAATTTTTA
82479887 CAAGAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 2 0.04
15 9 0.17
16 1 0.02
17 1 0.02
18 12 0.23
19 21 0.40
20 7 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.61
Consensus pattern (18 bp):
TTATAAATTTTTAAATAT
Found at i:82482181 original size:20 final size:18
Alignment explanation
Indices: 82482144--82482182 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
82482134 TTCCGCTAGA
*
82482144 TTTCCTTTTCTTTCTTAT
1 TTTCCTTTTCTTTATTAT
82482162 TTTCCTTTTGACTTTATTAT
1 TTTCCTTTT--CTTTATTAT
82482182 T
1 T
82482183 CGATGATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTCCTTTTCTTTATTAT
Found at i:82485736 original size:2 final size:2
Alignment explanation
Indices: 82485729--82485759 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
82485719 CTTCATTATT
82485729 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
82485760 TTTCATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:82488354 original size:31 final size:31
Alignment explanation
Indices: 82488316--82488377 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
82488306 CTAGGAAAGG
82488316 TGCATTGATTAGCGCCCTTTACTCAATCTAA
1 TGCATTGATTAGCGCCCTTTACTCAATCTAA
82488347 TGCATTGATTAGCGCCCTTTACTCAATCTAA
1 TGCATTGATTAGCGCCCTTTACTCAATCTAA
82488378 GTTGCTGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (31 bp):
TGCATTGATTAGCGCCCTTTACTCAATCTAA
Found at i:82494075 original size:3 final size:3
Alignment explanation
Indices: 82494056--82494105 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
82494046 TTTTATAGTC
*
82494056 TCT TC- TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
82494103 TCT
1 TCT
82494106 GTTATTAGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:82494215 original size:21 final size:21
Alignment explanation
Indices: 82494174--82494215 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
82494164 ATCCAATATG
*
82494174 GCTAGTTAACTGGTCATGTCA
1 GCTAGTTAACTGGTCACGTCA
82494195 GCTAGTTAACTGG-CTACGTCA
1 GCTAGTTAACTGGTC-ACGTCA
82494216 CCTGTCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (21 bp):
GCTAGTTAACTGGTCACGTCA
Found at i:82497973 original size:26 final size:26
Alignment explanation
Indices: 82497952--82498015 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
82497942 ACCGCCATAG
*
82497952 AGGCTTCCATTTCAGATACGCCACAA
1 AGGCTTCCATTTCAAATACGCCACAA
* *
82497978 AAGCTTTCATTTCAAATACGCCACAA
1 AGGCTTCCATTTCAAATACGCCACAA
82498004 AGGCTTCCATTT
1 AGGCTTCCATTT
82498016 TCTGACATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28
Consensus pattern (26 bp):
AGGCTTCCATTTCAAATACGCCACAA
Found at i:82498926 original size:2 final size:2
Alignment explanation
Indices: 82498919--82498968 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
82498909 ACAATCCATC
82498919 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
82498961 TA TA TA TA
1 TA TA TA TA
82498969 AACAATTCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:82504724 original size:21 final size:22
Alignment explanation
Indices: 82504700--82504756 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
82504690 GTCCCTGGTC
82504700 CACACGGGCGTGTGCCT-TAGT
1 CACACGGGCGTGTGCCTCTAGT
*** **
82504721 CACACGATAGTGTGCCTCTCTT
1 CACACGGGCGTGTGCCTCTAGT
82504743 CACACGGGCGTGTG
1 CACACGGGCGTGTG
82504757 GCTCCTCTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.25
Consensus pattern (22 bp):
CACACGGGCGTGTGCCTCTAGT
Found at i:82504774 original size:23 final size:22
Alignment explanation
Indices: 82504700--82504774 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
82504690 GTCCCTGGTC
**
82504700 CACACGGGCGTGTGCCT-TAGT
1 CACACGGGCGTGTGCCTCTCTT
***
82504721 CACACGATAGTGTGCCTCTCTT
1 CACACGGGCGTGTGCCTCTCTT
*
82504743 CACACGGGCGTGTGGCTCCTCTT
1 CACACGGGCGTGTGCCT-CTCTT
* *
82504766 TACATGGGC
1 CACACGGGC
82504775 TTTTGACCTC
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 14 0.34
22 15 0.37
23 12 0.29
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.27
Consensus pattern (22 bp):
CACACGGGCGTGTGCCTCTCTT
Found at i:82507718 original size:16 final size:15
Alignment explanation
Indices: 82507682--82507720 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
82507672 CCATAAACCA
*
82507682 TAATAAATTTAGTGT
1 TAATAAATTTAATGT
*
82507697 TGATAAATTTAAATGT
1 TAATAAATTT-AATGT
82507713 TAATAAAT
1 TAATAAAT
82507721 GATGCTATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (15 bp):
TAATAAATTTAATGT
Found at i:82511754 original size:21 final size:21
Alignment explanation
Indices: 82511730--82511777 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
82511720 ATTGGGTGGC
82511730 TCAGCTCTTACGTG-GTTT-TGT
1 TCAGCTCTTA--TGAGTTTCTGT
82511751 TCAGCTCTTATGAGTTTCTGT
1 TCAGCTCTTATGAGTTTCTGT
82511772 TCAGCT
1 TCAGCT
82511778 TTAAAGCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.08
20 4 0.16
21 19 0.76
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.46
Consensus pattern (21 bp):
TCAGCTCTTATGAGTTTCTGT
Found at i:82513841 original size:8 final size:8
Alignment explanation
Indices: 82513827--82513857 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
82513817 ATTTAAGTAA
82513827 ATATTATT
1 ATATTATT
*
82513835 TTATTATT
1 ATATTATT
82513843 ATATTATT
1 ATATTATT
82513851 ATATTAT
1 ATATTAT
82513858 ATTAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
ATATTATT
Found at i:82514088 original size:25 final size:23
Alignment explanation
Indices: 82514049--82514128 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 23
82514039 AAAATAAGCA
82514049 AAAGAAA-AAA-GAAAAAGGAAG
1 AAAGAAAGAAAGGAAAAAGGAAG
* *
82514070 AACAGAATAGAAATGAAAAACAGGGAG
1 AA-AGAA-AGAAA-GGAAAA-AGGAAG
82514097 AAAGAAAGAAAGGAAAAAGGGCAAG
1 AAAGAAAGAAAGGAAAAA-GG-AAG
82514122 AAAGAAA
1 AAAGAAA
82514129 AGGAATAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
21 2 0.04
22 4 0.09
23 2 0.04
24 10 0.21
25 14 0.30
26 8 0.17
27 7 0.15
ACGTcount: A:0.68, C:0.04, G:0.26, T:0.03
Consensus pattern (23 bp):
AAAGAAAGAAAGGAAAAAGGAAG
Found at i:82515035 original size:40 final size:41
Alignment explanation
Indices: 82514919--82515035 Score: 166
Period size: 40 Copynumber: 2.9 Consensus size: 41
82514909 CCTTCTCGAG
*
82514919 AATTAAAAGTGAATAGGATTTATTCTTGATTCACTA-AAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
*
82514960 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAATA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
* * *
82515001 TA-TAAAGTGGATAGGATTTGTTCCTGATTCACTAT
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAT
82515036 GGTAACTTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 61 0.87
41 9 0.13
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (41 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
Found at i:82515051 original size:40 final size:38
Alignment explanation
Indices: 82514919--82515059 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 38
82514909 CCTTCTCGAG
* * *
82514919 AATTAAAAGTGAATAGGATTTATTCTTGATTCACTAAAAGA
1 AATT-AAAGTGGATAGGATTTATTCCTGATTCACT--ATGA
* *
82514960 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAA
1 AATTAAAGTGGATAGGATTTATTCCTGATTCACTATGA
*
82514998 ATATATAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTA
1 A-AT-TAAAGTGGATAGGATTTATTCCTGATTCACTAT-G-A
* *
82515040 ACTTAAGGTGGATAGGATTT
1 AATTAAAGTGGATAGGATTT
82515060 TCCTTAAAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
38 3 0.03
39 2 0.02
40 76 0.86
41 5 0.06
42 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (38 bp):
AATTAAAGTGGATAGGATTTATTCCTGATTCACTATGA
Found at i:82516995 original size:27 final size:28
Alignment explanation
Indices: 82516938--82517007 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
82516928 AAACTTGTAC
*
82516938 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
82516966 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
82516993 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82517008 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:82517018 original size:27 final size:27
Alignment explanation
Indices: 82516938--82517019 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
82516928 AAACTTGTAC
* * *
82516938 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
82516966 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
82516993 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
82517020 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:82519583 original size:9 final size:9
Alignment explanation
Indices: 82519566--82519606 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
82519556 CACGAACAAC
82519566 AACAATAAT
1 AACAATAAT
82519575 AGA-AATAAT
1 A-ACAATAAT
82519584 AACAATAAT
1 AACAATAAT
*
82519593 AATAATAAT
1 AACAATAAT
82519602 AACAA
1 AACAA
82519607 AGATGTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.22
Consensus pattern (9 bp):
AACAATAAT
Found at i:82519589 original size:18 final size:18
Alignment explanation
Indices: 82519566--82519606 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
82519556 CACGAACAAC
82519566 AACAATAATAGA-AATAAT
1 AACAATAATA-ATAATAAT
82519584 AACAATAATAATAATAAT
1 AACAATAATAATAATAAT
82519602 AACAA
1 AACAA
82519607 AGATGTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.22
Consensus pattern (18 bp):
AACAATAATAATAATAAT
Found at i:82519871 original size:3 final size:3
Alignment explanation
Indices: 82519863--82520094 Score: 100
Period size: 3 Copynumber: 75.0 Consensus size: 3
82519853 GTTTTATAGT
* * * * *
82519863 ATA ATA ATA ATA ATA GAAA ATA ATA GTA ATA GAAA ATA ACA GTA CATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA
* * *
82519912 ATA ATA ATA TATG TTAA ACA ATA ATA AT- ATA A-A A-A ATA GGA-A ATA
1 ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA
* * *
82519957 ATA AT- ATA CTA ATA ATA ATA ATA ATA GATTA ATA ATA ATA ATG GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA
* * * * * *
82520003 GTA ATA ATA AAA ATA A-A AGTA ATA ATA ATA CGTTA AGTT GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA --ATA A-TA ATA ATA ATA
* * * *
82520051 A-A AAA ATG ATA ATA GTG ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82520095 CGATAAAAAT
Statistics
Matches: 170, Mismatches: 39, Indels: 40
0.68 0.16 0.16
Matches are distributed among these distances:
2 13 0.08
3 137 0.81
4 13 0.08
5 7 0.04
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:82519886 original size:16 final size:16
Alignment explanation
Indices: 82519865--82519901 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
82519855 TTTATAGTAT
82519865 AATAATAATAATAGAA
1 AATAATAATAATAGAA
*
82519881 AATAATAGTAATAGAA
1 AATAATAATAATAGAA
82519897 AATAA
1 AATAA
82519902 CAGTACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (16 bp):
AATAATAATAATAGAA
Found at i:82519906 original size:16 final size:16
Alignment explanation
Indices: 82519873--82519906 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
82519863 ATAATAATAA
*
82519873 TAATAGAAAATAATAG
1 TAATAGAAAATAACAG
82519889 TAATAGAAAATAACAG
1 TAATAGAAAATAACAG
82519905 TA
1 TA
82519907 CATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (16 bp):
TAATAGAAAATAACAG
Found at i:82519978 original size:20 final size:20
Alignment explanation
Indices: 82519953--82520032 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 20
82519943 AAAAATAGGA
*
82519953 AATAATAATATACTAATAAT
1 AATAATAATAGACTAATAAT
*
82519973 AATAATAATAGATTAATAAT
1 AATAATAATAGACTAATAAT
**
82519993 AATAATGGTAG--TAATAAT
1 AATAATAATAGACTAATAAT
* *
82520011 AAAAATAA-A-AGTAATAAT
1 AATAATAATAGACTAATAAT
82520029 AATA
1 AATA
82520033 CGTTAAGTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
17 1 0.02
18 22 0.44
20 27 0.54
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.31
Consensus pattern (20 bp):
AATAATAATAGACTAATAAT
Found at i:82529644 original size:35 final size:35
Alignment explanation
Indices: 82529605--82529721 Score: 171
Period size: 35 Copynumber: 3.2 Consensus size: 35
82529595 GTTTTGGGAG
*
82529605 AAATGTTGATTTATATTTATGTTAGGTATAATTTA
1 AAATGATGATTTATATTTATGTTAGGTATAATTTA
82529640 AAATGATGATTTATATTTATGTTAGGTATAGTATAGTTTA
1 AAATGATGATTTATATTTATGTTAGG--TA-TA-A-TTTA
*
82529680 AAATGATGATTTATATTTATGTTAGGTATAGTTTA
1 AAATGATGATTTATATTTATGTTAGGTATAATTTA
82529715 AAATGAT
1 AAATGAT
82529722 TATTATGTGG
Statistics
Matches: 75, Mismatches: 2, Indels: 10
0.86 0.02 0.11
Matches are distributed among these distances:
35 36 0.48
37 4 0.05
38 4 0.05
39 1 0.01
40 30 0.40
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (35 bp):
AAATGATGATTTATATTTATGTTAGGTATAATTTA
Found at i:82529680 original size:40 final size:38
Alignment explanation
Indices: 82529605--82529711 Score: 166
Period size: 40 Copynumber: 2.8 Consensus size: 38
82529595 GTTTTGGGAG
*
82529605 AAATGTTGATTTATATTTATGTTAGG--TA-TAATTTA
1 AAATGATGATTTATATTTATGTTAGGTATAGTAATTTA
82529640 AAATGATGATTTATATTTATGTTAGGTATAGTATAGTTTA
1 AAATGATGATTTATATTTATGTTAGGTATAGTA-A-TTTA
82529680 AAATGATGATTTATATTTATGTTAGGTATAGT
1 AAATGATGATTTATATTTATGTTAGGTATAGT
82529712 TTAAAATGAT
Statistics
Matches: 66, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
35 25 0.38
37 2 0.03
38 2 0.03
39 1 0.02
40 36 0.55
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.49
Consensus pattern (38 bp):
AAATGATGATTTATATTTATGTTAGGTATAGTAATTTA
Found at i:82532322 original size:21 final size:21
Alignment explanation
Indices: 82532297--82532351 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
82532287 CTGGGCAGAC
82532297 GCCCGTGTGGTCAGGCAACACT
1 GCCCGTGTGGTCAGGCAACA-T
*
82532319 -CCCGTGTGGTCGGGCAACAT
1 GCCCGTGTGGTCAGGCAACAT
82532339 GCCCGTGTGGTCA
1 GCCCGTGTGGTCA
82532352 TTACAATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 29 0.97
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.20
Consensus pattern (21 bp):
GCCCGTGTGGTCAGGCAACAT
Found at i:82533300 original size:20 final size:20
Alignment explanation
Indices: 82533275--82533314 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
82533265 AAGAAGGATG
82533275 ATATCATCCCTTTTCATCTT
1 ATATCATCCCTTTTCATCTT
82533295 ATATCATCCCTTTTCATCTT
1 ATATCATCCCTTTTCATCTT
82533315 CTTCCTCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATCATCCCTTTTCATCTT
Found at i:82534294 original size:46 final size:45
Alignment explanation
Indices: 82534140--82534350 Score: 172
Period size: 46 Copynumber: 4.5 Consensus size: 45
82534130 TGTGTGAGCT
* * * **
82534140 AGTGTGAGACATATCTGGGACATGCATCGGCCACGTTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
* * * * * * *
82534186 AGTGTAAGACCATGTTTGGGACATGGCATTGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA-AGCC
*
82534234 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
* * * * * *
82534280 AGTGTAAGAAATGTCTGAGACATGAATTGG-CTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA-AGCC
82534326 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
82534351 GCATTGACAC
Statistics
Matches: 129, Mismatches: 29, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
45 3 0.02
46 65 0.50
47 40 0.31
48 21 0.16
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAAGCC
Found at i:82538473 original size:14 final size:15
Alignment explanation
Indices: 82538456--82538511 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
82538446 TTGTAGGTAT
82538456 GATATG-CAATCTTA
1 GATATGACAATCTTA
82538470 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
82538487 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
82538505 GATATGA
1 GATATGA
82538512 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:82538484 original size:17 final size:17
Alignment explanation
Indices: 82538462--82538524 Score: 90
Period size: 17 Copynumber: 3.5 Consensus size: 17
82538452 GTATGATATG
82538462 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
82538479 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
82538497 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
82538514 TGCAATCTTAG
1 --CAATCTTAG
82538525 TAGATATGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.39
18 16 0.39
19 9 0.22
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:82538504 original size:35 final size:37
Alignment explanation
Indices: 82538435--82538532 Score: 125
Period size: 35 Copynumber: 2.7 Consensus size: 37
82538425 ATAATCTTCA
*
82538435 ATGATATGCAAT-TGTAGGTATGATATGCAATCTTAGAT
1 ATGATA-GCAATCT-TAGATATGATATGCAATCTTAGAT
82538473 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
82538508 ATGATATGCAATCTTAG-TA-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
82538533 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
35 22 0.40
36 17 0.31
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:82538532 original size:17 final size:19
Alignment explanation
Indices: 82538435--82538532 Score: 136
Period size: 19 Copynumber: 5.4 Consensus size: 19
82538425 ATAATCTTCA
*
82538435 ATGATATGCAAT-TGTAGGT
1 ATGATATGCAATCT-TAGAT
82538454 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82538473 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82538490 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82538508 ATGATATGCAATCTTAG-T
1 ATGATATGCAATCTTAGAT
82538526 A-GATATG
1 ATGATATG
82538533 ATTTTGTAAT
Statistics
Matches: 74, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
17 22 0.30
18 18 0.24
19 33 0.45
20 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82538547 original size:23 final size:22
Alignment explanation
Indices: 82538435--82538551 Score: 86
Period size: 19 Copynumber: 6.0 Consensus size: 22
82538425 ATAATCTTCA
*
82538435 ATGATATGCAA--TT-GTAGGT
1 ATGATATGCAATCTTAGTAGAT
82538454 ATGATATGCAATC-T--TAGAT
1 ATGATATGCAATCTTAGTAGAT
82538473 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGTAGAT
82538490 ATGAT-TGCAATC-T--TAGAT
1 ATGATATGCAATCTTAGTAGAT
82538508 ATGATATGCAATCTTAGTAGAT
1 ATGATATGCAATCTTAGTAGAT
* *
82538530 ATGATTTTGTAATCTTAG-AGAT
1 ATGA-TATGCAATCTTAGTAGAT
82538552 TTAATTTGTA
Statistics
Matches: 84, Mismatches: 3, Indels: 19
0.79 0.03 0.18
Matches are distributed among these distances:
17 15 0.18
18 15 0.18
19 28 0.33
20 2 0.02
22 13 0.15
23 11 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGTAGAT
Found at i:82538836 original size:18 final size:18
Alignment explanation
Indices: 82538813--82538847 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
82538803 TGTTTCCCTG
82538813 TTTTTTT-ATATATTTTAA
1 TTTTTTTAATA-ATTTTAA
82538831 TTTTTTTAATAATTTTA
1 TTTTTTTAATAATTTTA
82538848 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTTAATAATTTTAA
Found at i:82546139 original size:40 final size:40
Alignment explanation
Indices: 82546065--82546326 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
82546055 AACCCAAGTA
* * *
82546065 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
82546104 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
82546144 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
82546184 CCTTCAGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
82546224 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
82546264 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
82546304 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82546327 CATTCGAATA
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 12 0.06
40 190 0.93
41 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:82554647 original size:40 final size:40
Alignment explanation
Indices: 82554573--82554696 Score: 164
Period size: 40 Copynumber: 3.1 Consensus size: 40
82554563 AACCCAAGTA
*
82554573 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
82554612 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
82554652 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
82554692 CCTTC
1 CCTTC
82554697 ATGTGACATC
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 12 0.16
40 60 0.79
41 3 0.04
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:82556121 original size:29 final size:29
Alignment explanation
Indices: 82556089--82556161 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
82556079 AGTTTGCTTC
82556089 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
82556118 GGCATTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
82556147 GGCACTATGTGTGCG
1 GGCACTAAGTGTGCG
82556162 ATTTACTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:82556171 original size:24 final size:24
Alignment explanation
Indices: 82556144--82556234 Score: 164
Period size: 24 Copynumber: 3.8 Consensus size: 24
82556134 GCTGGAAATA
82556144 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
82556168 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
82556192 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
82556216 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
82556235 ACATAATAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:82556248 original size:48 final size:48
Alignment explanation
Indices: 82556143--82556256 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
82556133 TGCTGGAAAT
* * **
82556143 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
* * *
82556191 CTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATA
82556240 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
82556257 CACATTCGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (48 bp):
ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
Found at i:82557666 original size:40 final size:40
Alignment explanation
Indices: 82557606--82557747 Score: 239
Period size: 40 Copynumber: 3.5 Consensus size: 40
82557596 GGGTGTTACA
* *
82557606 CTTCAGGACTTAGCTCGGATATAATCAATAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATGC
82557646 CTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATGC
* *
82557686 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATGC
*
82557726 CTTCGGGACTTAACCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
82557748 CATGCGAATA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATGC
Found at i:82564295 original size:78 final size:78
Alignment explanation
Indices: 82564184--82564477 Score: 376
Period size: 78 Copynumber: 3.8 Consensus size: 78
82564174 GAAGATACAA
* * * *
82564184 ATTTGCCATCTCC-ATATTCGACAGGGAGCAGATCGAAGACATAGCAGATTTGACCTTCATTGAA
1 ATTTGGCATC-CCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82564248 GCATATCTAAAATG
65 GCAGATCCAAGATG
* * *
82564262 ATTTGGCATCCCTATATTAGACGGGGAGTAGATCGAAGACACAGCAGATCTAACCTTCATTGAAG
1 ATTTGGCATCCCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
82564327 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
82564340 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGAT-TGGACCTTCATTGAA
1 ATTTGGCATCCCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
*
82564404 GTAGATCCAAGATG
65 GCAGATCCAAGATG
* * * * *
82564418 ATTTGGCATCTCTGTATTAGATGGAGAGCAGATCGAAGACATAGCAGATCTGACTTTCAT
1 ATTTGGCATCCCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
82564478 GTGTTTACAT
Statistics
Matches: 190, Mismatches: 23, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
77 3 0.02
78 186 0.98
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (78 bp):
ATTTGGCATCCCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:82564570 original size:45 final size:45
Alignment explanation
Indices: 82564500--82564690 Score: 240
Period size: 45 Copynumber: 4.3 Consensus size: 45
82564490 AAGTAGATCC
* * *
82564500 AAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
*
82564545 GAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
* * * * **
82564590 AAGA-AGCAGATTTGGCGTCTCTATATTAGACAGGGAGCAGATCA
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
* * **
82564634 AAGATAACAGATTTAGCGTCTCTGTATTAGACGGGGAGCAGATCA
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
*
82564679 AAGATAGCAGAT
1 AAGATAACAGAT
82564691 ATCACCTTCC
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 38 0.29
45 91 0.71
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG
Found at i:82564619 original size:89 final size:90
Alignment explanation
Indices: 82564494--82564690 Score: 254
Period size: 89 Copynumber: 2.2 Consensus size: 90
82564484 ACATCGAAGT
* * * ***
82564494 AGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTGGAGATAACAGATT
1 AGATCAAAGATAG-CAGATTTGGCATCTCTATATTAGACAGGGAGAAAATCAAAGATAACAGATT
*
82564558 TGGCATCTCTGTATTAGACGGGGAGC
65 TAGCATCTCTGTATTAGACGGGGAGC
** * * *
82564584 AGATTGAAGA-AGCAGATTTGGCGTCTCTATATTAGACAGGGAGCAGATCAAAGATAACAGATTT
1 AGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACAGGGAGAAAATCAAAGATAACAGATTT
*
82564648 AGCGTCTCTGTATTAGACGGGGAGC
66 AGCATCTCTGTATTAGACGGGGAGC
82564673 AGATCAAAGATAGCAGAT
1 AGATCAAAGATAGCAGAT
82564691 ATCACCTTCC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 75 0.82
90 16 0.18
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (90 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACAGGGAGAAAATCAAAGATAACAGATTT
AGCATCTCTGTATTAGACGGGGAGC
Found at i:82565065 original size:19 final size:19
Alignment explanation
Indices: 82565041--82565131 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
82565031 ATAATCTTCA
* *
82565041 ATGATATGCAATCGTGGAT
1 ATGATATGCAATCTTAGAT
82565060 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82565079 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82565096 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82565114 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
82565132 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Done.