Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 278 of 345
Found at i:82861089 original size:23 final size:23
Alignment explanation
Indices: 82860989--82861090 Score: 91
Period size: 23 Copynumber: 4.4 Consensus size: 23
82860979 TCAGCTCGTA
*
82860989 AGAGCTTACTGTTTTTAGCTCATT
1 AGAGCTTACTG-TTTTAGCTCAAT
* * *
82861013 GGAGCTTACTGATTTAGCTC-GT
1 AGAGCTTACTGTTTTAGCTCAAT
* **
82861035 ATGAGCTTACTG-TTCAGCTTGAT
1 A-GAGCTTACTGTTTTAGCTCAAT
*
82861058 AGAGTTTACTGTTTTAGCTCAAT
1 AGAGCTTACTGTTTTAGCTCAAT
*
82861081 AAAGCTTACT
1 AGAGCTTACT
82861091 ATTCATCAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
22 16 0.26
23 36 0.58
24 10 0.16
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (23 bp):
AGAGCTTACTGTTTTAGCTCAAT
Found at i:82865957 original size:27 final size:25
Alignment explanation
Indices: 82865889--82865958 Score: 61
Period size: 27 Copynumber: 2.7 Consensus size: 25
82865879 GTAAATTTTT
*
82865889 AAAAAA-AATTAATTAAAACCTTAA
1 AAAAAACAATCAATTAAAACCTTAA
* * *
82865913 AAAAGACATATACTATTAAAACTTTAA
1 AAAAAACA-AT-CAATTAAAACCTTAA
82865940 TGAAAAAACAATCAATTAA
1 --AAAAAACAATCAATTAA
82865959 GTTTTTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
24 5 0.14
25 1 0.03
26 2 0.06
27 18 0.51
28 2 0.06
29 7 0.20
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (25 bp):
AAAAAACAATCAATTAAAACCTTAA
Found at i:82871095 original size:19 final size:19
Alignment explanation
Indices: 82871071--82871110 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
82871061 AAATTAATTT
82871071 AATTAA-CTAAATGCAAATG
1 AATTAACCTAAATGC-AATG
82871090 AATTAACCTAAATGCAATG
1 AATTAACCTAAATGCAATG
82871109 AA
1 AA
82871111 ATAATTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (19 bp):
AATTAACCTAAATGCAATG
Found at i:82873562 original size:42 final size:42
Alignment explanation
Indices: 82873484--82873563 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
82873474 ATAAGGTTAA
*
82873484 AATCATTCTCCAAGATCAAGTCCAAAAAAGCTCTTAAAGTGG
1 AATCATTCTCCAAGATCAAGTCCAAAAAAGCCCTTAAAGTGG
* * *
82873526 AATCATTCATTCAAGATCAAGTCCCATAAA-CCCTTAAA
1 AATCATTC-TCCAAGATCAAGTCCAAAAAAGCCCTTAAA
82873564 TCAAAGCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 15 0.45
43 18 0.55
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (42 bp):
AATCATTCTCCAAGATCAAGTCCAAAAAAGCCCTTAAAGTGG
Found at i:82875023 original size:21 final size:21
Alignment explanation
Indices: 82874999--82875050 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
82874989 ACATATTGAG
*
82874999 CCAAAAATGCCTATATCCCTT
1 CCAAAAATGCCTAGATCCCTT
*
82875020 CCAAAAATGCCTAGATTCCTT
1 CCAAAAATGCCTAGATCCCTT
**
82875041 TTAAAAATGC
1 CCAAAAATGC
82875051 ACCACAAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.29
Consensus pattern (21 bp):
CCAAAAATGCCTAGATCCCTT
Found at i:82875477 original size:15 final size:16
Alignment explanation
Indices: 82875457--82875489 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82875447 AGTAACAAGA
*
82875457 ATTTAATTGTT-AAAT
1 ATTTAATTATTCAAAT
82875472 ATTTAATTATTCAAAT
1 ATTTAATTATTCAAAT
82875488 AT
1 AT
82875490 CATGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTAATTATTCAAAT
Found at i:82876167 original size:35 final size:35
Alignment explanation
Indices: 82876116--82876184 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
82876106 TTATAAATAC
82876116 CGCAAAAATCGCCGCTATAGATAACGCCGCTAAAA
1 CGCAAAAATCGCCGCTATAGATAACGCCGCTAAAA
* *
82876151 CGCAGAAATCGCCGCTATAGATAATGCCGCTAAA
1 CGCAAAAATCGCCGCTATAGATAACGCCGCTAAA
82876185 GGTCATGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (35 bp):
CGCAAAAATCGCCGCTATAGATAACGCCGCTAAAA
Found at i:82876371 original size:85 final size:85
Alignment explanation
Indices: 82876176--82876442 Score: 344
Period size: 85 Copynumber: 3.1 Consensus size: 85
82876166 TATAGATAAT
* * *
82876176 GCCGCTAAAGGTCATGACTTTTAGCGGCGCTTT-CCCAAAAACGCCTCTAAA-AGTCATGACCTT
1 GCCGCTAAA-GACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGA-TCATGACCTT
** * *
82876239 TAGCTGCGCTTTCCCAAAAAAT
64 TAGCAACGCTTTCCCCAAAAAC
82876261 GCCGCTAAAGATCATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGATCATGACCTTT
1 GCCGCTAAAGA-CATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGATCATGACCTTT
82876326 AGCAACG-TTATCCCCAAAAAC
65 AGCAACGCTT-TCCCCAAAAAC
* * * * *
82876347 GCCGCTAAAGACATGACCTTTAGCGACGTTTTCCCAAAAAACACCGCTAAAGA-CATGATCTTTA
1 GCCGCTAAAGACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGATCATGACCTTTA
*
82876411 GCGACGCTTTCCCCAAAAAC
66 GCAACGCTTTCCCCAAAAAC
*
82876431 GCCACTAAAGAC
1 GCCGCTAAAGAC
82876443 CATATATATT
Statistics
Matches: 163, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
84 38 0.23
85 71 0.44
86 53 0.33
87 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (85 bp):
GCCGCTAAAGACATGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAGATCATGACCTTTA
GCAACGCTTTCCCCAAAAAC
Found at i:82876441 original size:42 final size:42
Alignment explanation
Indices: 82876176--82876442 Score: 333
Period size: 42 Copynumber: 6.3 Consensus size: 42
82876166 TATAGATAAT
* * *
82876176 GCCGCTAAAGGTCATGACTTTTAGCGGCGCTTT-CCCAAAAAC
1 GCCGCTAAA-GACATGACCTTTAGCGACGCTTTCCCCAAAAAC
* * * *
82876218 GCCTCTAAAAGTCATGACCTTTAGCTG-CGCTTTCCCAAAAAAT
1 GCCGCT-AAAGACATGACCTTTAGC-GACGCTTTCCCCAAAAAC
*
82876261 GCCGCTAAAGATCATGACCTTTAGCGGCGCTTTCCCCAAAAAC
1 GCCGCTAAAGA-CATGACCTTTAGCGACGCTTTCCCCAAAAAC
*
82876304 GCCGCTAAAGATCATGACCTTTAGCAACG-TTATCCCCAAAAAC
1 GCCGCTAAAGA-CATGACCTTTAGCGACGCTT-TCCCCAAAAAC
* *
82876347 GCCGCTAAAGACATGACCTTTAGCGACGTTTTCCCAAAAAAC
1 GCCGCTAAAGACATGACCTTTAGCGACGCTTTCCCCAAAAAC
* *
82876389 ACCGCTAAAGACATGATCTTTAGCGACGCTTTCCCCAAAAAC
1 GCCGCTAAAGACATGACCTTTAGCGACGCTTTCCCCAAAAAC
*
82876431 GCCACTAAAGAC
1 GCCGCTAAAGAC
82876443 CATATATATT
Statistics
Matches: 200, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
42 106 0.53
43 94 0.47
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (42 bp):
GCCGCTAAAGACATGACCTTTAGCGACGCTTTCCCCAAAAAC
Found at i:82878297 original size:21 final size:21
Alignment explanation
Indices: 82878257--82878297 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82878247 TCACGTTTGC
* *
82878257 CTCTTTTGCTTTAAGTTCCTT
1 CTCTCTTGCTTTAAGATCCTT
*
82878278 CTCTCTTGCTTTTAGATCCT
1 CTCTCTTGCTTTAAGATCCT
82878298 AGATTTGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.27, G:0.10, T:0.54
Consensus pattern (21 bp):
CTCTCTTGCTTTAAGATCCTT
Found at i:82882826 original size:22 final size:22
Alignment explanation
Indices: 82882794--82882847 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
82882784 GTTTTTTGGG
*
82882794 GTTTAGGGTTTTAAAGGTTATA
1 GTTTAGTGTTTTAAAGGTTATA
**
82882816 GTTTAGTG-TTTAGGGGTTATA
1 GTTTAGTGTTTTAAAGGTTATA
82882837 -TATTAGTGTTT
1 GT-TTAGTGTTT
82882848 ATTATTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 17 0.63
22 9 0.33
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (22 bp):
GTTTAGTGTTTTAAAGGTTATA
Found at i:82882833 original size:21 final size:21
Alignment explanation
Indices: 82882809--82882848 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
82882799 GGGTTTTAAA
82882809 GGTTATAGT-TTAGTGTTTAGG
1 GGTTATA-TATTAGTGTTTAGG
82882830 GGTTATATATTAGTGTTTA
1 GGTTATATATTAGTGTTTA
82882849 TTATTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.50
Consensus pattern (21 bp):
GGTTATATATTAGTGTTTAGG
Found at i:82882945 original size:41 final size:41
Alignment explanation
Indices: 82882888--82882979 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 41
82882878 GTTATATGAC
* *
82882888 TTTTAGAGGCGTTTTACCGAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * *
82882929 TTTTAGCGGTGTTTTACTGGAAGCGCCGCTAATGCTCTGTT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
82882970 TTTTAGCGGC
1 TTTTAGCGGC
82882980 AAACGCCGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:82883003 original size:30 final size:31
Alignment explanation
Indices: 82882952--82883009 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
82882942 TTACTGGAAG
82882952 CGCCGCTAATGCTCTGTTTTTTAGCGGCAAA
1 CGCCGCTAATGCTCTGTTTTTTAGCGGCAAA
*
82882983 CGCCGCTATTGCTCTG-TTTTTAGCGGC
1 CGCCGCTAATGCTCTGTTTTTTAGCGGC
82883010 GTTTTACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.14, C:0.28, G:0.24, T:0.34
Consensus pattern (31 bp):
CGCCGCTAATGCTCTGTTTTTTAGCGGCAAA
Found at i:82884386 original size:31 final size:30
Alignment explanation
Indices: 82884330--82884389 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
82884320 TGTAAGGCTA
*
82884330 TTAATTATAATTTATTAAATAAAAATAATC
1 TTAATTAAAATTTATTAAATAAAAATAATC
*
82884360 TTAATTAAAATATTATTTTAAT-AAAATAAT
1 TTAATTAAAAT-TTA-TTAAATAAAAATAAT
82884390 TAAATTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.38
31 11 0.42
32 5 0.19
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (30 bp):
TTAATTAAAATTTATTAAATAAAAATAATC
Found at i:82888766 original size:15 final size:15
Alignment explanation
Indices: 82888748--82888777 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82888738 TTTTTTGTTT
82888748 CTTTTTATTTTTGGG
1 CTTTTTATTTTTGGG
*
82888763 CTTTTTTTTTTTGGG
1 CTTTTTATTTTTGGG
82888778 GGGGGGGGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.07, G:0.20, T:0.70
Consensus pattern (15 bp):
CTTTTTATTTTTGGG
Found at i:82895349 original size:23 final size:24
Alignment explanation
Indices: 82895305--82895355 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
82895295 AATGTTTAAG
82895305 GGAATCAATATTTTTATGTTATTA
1 GGAATCAATATTTTTATGTTATTA
* *
82895329 GGAAT-AATTTTTTTATTTTATTA
1 GGAATCAATATTTTTATGTTATTA
82895352 GGAA
1 GGAA
82895356 ACTATTAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (24 bp):
GGAATCAATATTTTTATGTTATTA
Found at i:82897161 original size:22 final size:22
Alignment explanation
Indices: 82897133--82897174 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
82897123 AAAGAGAAAG
82897133 TTATTAAAGAGAGTCTACAAAC
1 TTATTAAAGAGAGTCTACAAAC
82897155 TTATTAAAGAGAGTCTACAA
1 TTATTAAAGAGAGTCTACAA
82897175 GCTATGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (22 bp):
TTATTAAAGAGAGTCTACAAAC
Found at i:82902381 original size:14 final size:15
Alignment explanation
Indices: 82902362--82902394 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
82902352 GATACATTGG
*
82902362 AAGAAAAGT-TTGTA
1 AAGAAAAGTCTTGAA
82902376 AAGAAAAGTCTTGAA
1 AAGAAAAGTCTTGAA
82902391 AAGA
1 AAGA
82902395 GGCTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.55, C:0.03, G:0.21, T:0.21
Consensus pattern (15 bp):
AAGAAAAGTCTTGAA
Found at i:82906843 original size:22 final size:22
Alignment explanation
Indices: 82906804--82906848 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
82906794 TGAATAAACC
* *
82906804 AAATAAACTTTATTTCTGCAAA
1 AAATAAACTTAATATCTGCAAA
*
82906826 AAATAAACTTAATATCTGTAAA
1 AAATAAACTTAATATCTGCAAA
82906848 A
1 A
82906849 TGATATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.33
Consensus pattern (22 bp):
AAATAAACTTAATATCTGCAAA
Found at i:82910337 original size:40 final size:40
Alignment explanation
Indices: 82910222--82910437 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 40
82910212 TGGATGATAA
* *
82910222 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
* * *
82910262 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
82910301 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* * *
82910341 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
82910381 CCGGGCTAAGTCCCGAAGGCCTTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAT
* *
82910421 CC-GGCTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAG
82910438 ATACTTGGTT
Statistics
Matches: 154, Mismatches: 19, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 48 0.31
40 106 0.69
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:82910436 original size:119 final size:119
Alignment explanation
Indices: 82910218--82910437 Score: 302
Period size: 119 Copynumber: 1.8 Consensus size: 119
82910208 TATTTGGATG
* * * *
82910218 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
82910283 TTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACT
66 TTGAGCAAGCTACTATATCCGGGCTAAATCCCGAAGGCATTTCTGCAAGTTACT
*
82910337 ATAACCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
82910401 CTTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAG
64 ATTTGAGCAAGCTA-CTATATCCGGGCTAAATCCCGAAG
82910438 ATACTTGGTT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 61 0.69
120 25 0.28
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGCTACTATATCCGGGCTAAATCCCGAAGGCATTTCTGCAAGTTACT
Found at i:82915267 original size:22 final size:23
Alignment explanation
Indices: 82915239--82915281 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
82915229 TTGAGAATGA
82915239 ATTGATTC-TTTATT-ATTTTTGG
1 ATTGATTCGTTT-TTCATTTTTGG
82915261 ATTGATTCGTTTTTCATTTTT
1 ATTGATTCGTTTTTCATTTTT
82915282 AATCTTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.16, C:0.07, G:0.12, T:0.65
Consensus pattern (23 bp):
ATTGATTCGTTTTTCATTTTTGG
Found at i:82921758 original size:20 final size:19
Alignment explanation
Indices: 82921692--82921760 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 19
82921682 TAAACGAAAT
82921692 TGAGAGAAGAAAAAGAG-A
1 TGAGAGAAGAAAAAGAGAA
82921710 -GATGA-AAGAAAAAGA-AA
1 TGA-GAGAAGAAAAAGAGAA
82921727 TTGA-A-AAGGAAAAAGAGAA
1 -TGAGAGAA-GAAAAAGAGAA
82921746 TGAGAGAGAGAAAAA
1 TGAGAGA-AGAAAAA
82921761 CAAGATTGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
17 16 0.38
18 13 0.31
19 5 0.12
20 7 0.17
21 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (19 bp):
TGAGAGAAGAAAAAGAGAA
Found at i:82924083 original size:93 final size:93
Alignment explanation
Indices: 82923956--82924125 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
82923946 CCCATAAGCA
* * * *
82923956 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGAACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
82924021 GAGCTCGGATGCCTAGTTACATCTCTCG
66 GAGCTCGGATGCCTAGTTACATCTCTCG
* *
82924049 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
*
82924114 GAGTTCGGATGC
66 GAGCTCGGATGC
82924126 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCG
Found at i:82924113 original size:46 final size:46
Alignment explanation
Indices: 82923947--82924122 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
82923937 TGTAACCCGC
** * * *
82923947 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
82923993 CCATAAGTGAACTTGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
82924039 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82924086 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82924123 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 65 0.62
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82927767 original size:2 final size:2
Alignment explanation
Indices: 82927760--82927789 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
82927750 CATGTTTTGA
*
82927760 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82927790 CTATTTGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:82928989 original size:43 final size:43
Alignment explanation
Indices: 82928928--82929015 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
82928918 CCTAATGATG
* *
82928928 AATGACTGGTTTACTCAATATATCCGGACTAACCCAGCTGTAC
1 AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
* *
82928971 AATGACTGGATTACTCAATATATCCGGGCTAACCTAGCTGCAC
1 AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
82929014 AA
1 AA
82929016 CAACCTCCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
AATGACTGGATTACTCAATATATCCGGACTAACCCAGCTGCAC
Found at i:82950939 original size:40 final size:40
Alignment explanation
Indices: 82950813--82950941 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
82950803 TGCTGGAAAT
* * *
82950813 TATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGA
* *
82950853 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CA
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGA
*
82950892 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGA
1 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGA
82950933 TATATCCGG
1 TATATCCGG
82950942 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
39 4 0.05
40 71 0.93
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGA
Found at i:82953147 original size:24 final size:23
Alignment explanation
Indices: 82953114--82953165 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
82953104 CCTCTTTTTC
82953114 TCTCTTTCTCAGGCAAAGGCAAA
1 TCTCTTTCTCAGGCAAAGGCAAA
*
82953137 TCTCATTTCTCAGGCAAATGCAAA
1 TCTC-TTTCTCAGGCAAAGGCAAA
82953161 TCTCT
1 TCTCT
82953166 CTTTCTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
TCTCTTTCTCAGGCAAAGGCAAA
Found at i:82955834 original size:12 final size:12
Alignment explanation
Indices: 82955817--82955842 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82955807 TGGTAACTTT
82955817 AGTCATTGCTTG
1 AGTCATTGCTTG
82955829 AGTCATTGCTTG
1 AGTCATTGCTTG
82955841 AG
1 AG
82955843 AAACTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (12 bp):
AGTCATTGCTTG
Found at i:82957311 original size:32 final size:32
Alignment explanation
Indices: 82957273--82957361 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
82957263 TTGAAATTTT
*
82957273 AGTTTGTTGGATTTTGAAATTATTGTGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTGTGT-TTGA
** * * *
82957306 A-TTTGTTACATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTGTGTTTGA
* *
82957337 AGGTTGTTGGATATTGAAATGATTG
1 AGTTTGTTGGATATTGAAATTATTG
82957362 ACAATGACAA
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
31 4 0.09
32 38 0.88
33 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTGTGTTTGA
Found at i:82958639 original size:19 final size:18
Alignment explanation
Indices: 82958612--82958650 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
82958602 ACAATTTATA
82958612 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
82958630 ATATATAATTTATTAATAT
1 ATATA-AATTTATTAATAT
82958649 AT
1 AT
82958651 GTGAAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:82958852 original size:2 final size:2
Alignment explanation
Indices: 82958845--82958877 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82958835 TAATATCTAC
82958845 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82958878 ATGATTAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82961392 original size:13 final size:14
Alignment explanation
Indices: 82961371--82961435 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
82961361 TTTAGCTATT
*
82961371 TTTATTTTTTTA-A
1 TTTAATTTTTTACA
82961384 TTTAA-TTTTTACA
1 TTTAATTTTTTACA
***
82961397 TTCTAATTTGACACA
1 TT-TAATTTTTTACA
82961412 TTCTAATTTTTTA-A
1 TT-TAATTTTTTACA
82961426 TTTAATTTTT
1 TTTAATTTTT
82961436 ATTTATATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
12 6 0.14
13 15 0.36
14 6 0.14
15 15 0.36
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTAATTTTTTACA
Found at i:82965505 original size:33 final size:33
Alignment explanation
Indices: 82965468--82965542 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
82965458 CAAACATATG
*
82965468 AAGTAGTAATTAAATAATGCATGATATACAAAA
1 AAGTAGTAATTAAATAATGCATAATATACAAAA
** *
82965501 AAGTAACAATTAAATAATGCATAATATACAGAA
1 AAGTAGTAATTAAATAATGCATAATATACAAAA
82965534 AAG-AGTAAT
1 AAGTAGTAAT
82965543 ACAATATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 4 0.11
33 32 0.89
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.25
Consensus pattern (33 bp):
AAGTAGTAATTAAATAATGCATAATATACAAAA
Found at i:82967517 original size:28 final size:28
Alignment explanation
Indices: 82967452--82967552 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
82967442 ATAGTGAATC
*
82967452 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
82967481 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82967509 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
82967539 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82967553 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82975470 original size:28 final size:28
Alignment explanation
Indices: 82975405--82975505 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
82975395 ATAGTGAATC
*
82975405 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
82975434 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82975462 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
82975492 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82975506 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82978801 original size:40 final size:40
Alignment explanation
Indices: 82978718--82978937 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
82978708 ACCCAAGTAT
** * *
82978718 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
82978756 CTTCGGGTCTTATCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
82978796 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82978836 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
82978876 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82978916 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
82978938 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 10 0.07
39 16 0.11
40 124 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:82980748 original size:23 final size:23
Alignment explanation
Indices: 82980704--82980754 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
82980694 GGGCTGTCAC
82980704 ATAAT-AAATAATATTAATATAT
1 ATAATAAAATAATATTAATATAT
*
82980726 ATAATAAAATAATCTTACA-ATAT
1 ATAATAAAATAATATTA-ATATAT
82980749 ATAATA
1 ATAATA
82980755 TAAAAGCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 20 0.77
24 1 0.04
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAATAAAATAATATTAATATAT
Found at i:82980802 original size:2 final size:2
Alignment explanation
Indices: 82980797--82980827 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
82980787 AATATATGAA
82980797 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82980828 ATAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82981456 original size:22 final size:22
Alignment explanation
Indices: 82981431--82981474 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
82981421 CCTTCCACAG
82981431 GTAACCTCTTTTCCCTCAGATC
1 GTAACCTCTTTTCCCTCAGATC
82981453 GTAACCTCTTTTCCCTCAGATC
1 GTAACCTCTTTTCCCTCAGATC
82981475 CTTACTCGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.09, T:0.36
Consensus pattern (22 bp):
GTAACCTCTTTTCCCTCAGATC
Found at i:82982952 original size:210 final size:210
Alignment explanation
Indices: 82982337--82983145 Score: 1377
Period size: 210 Copynumber: 3.8 Consensus size: 210
82982327 AAATCTGCTT
82982337 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
82982402 GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGATTACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC
* ***
82982467 ATCTTGGATCTGCTTCAGCGTAAACATCTGGAGGTGAGATCTGCTATGTGTCTGCCTTCCATTTG
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAA
*
82982532 AGTGAAGATGCCAAA
196 AGTGAAGATGCCAGA
82982547 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
82982612 GTGAAAGCCAAATCAGCTATATCTTTTAGATCTGCTCCCAGTTGAATACAGAGAGATAAGATCTG
66 GTGAAAGCCAAATCAGCTATATC-TTT-GATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTG
* *
82982677 TCATCTTGGATCTGCTTCAGCGTAAACGTCTGAAGGTGAGATCTGCTATGTGCCTGCCTTCCATC
129 TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATC
*
82982742 AAAGTGAAAATGCCAGA
194 AAAGTGAAGATGCCAGA
** * *
82982759 CTTTAATTTTTTCTCTGACAATACAGAGACAACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
82982824 ATGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCTGTCGAGTACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC
82982889 ATCTTGGATCTGCTTCAGCGTAAACATCT-AGAGGTGAGATCTGCTATGTGTCTGCCTTCCATCA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGA-AGGTGAGATCTGCTATGTGTCTGCCTTCCATCA
*
82982953 AAGTGAAGATGCTAGA
195 AAGTGAAGATGCCAGA
* * *
82982969 CTTCGATTTGTTCTCTAACAATACAGAGACGACTAATTATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
82983034 GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC
*
82983099 ATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTAT
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTAT
82983146 ATTGCGGCCT
Statistics
Matches: 561, Mismatches: 34, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
209 1 0.00
210 362 0.65
211 7 0.01
212 191 0.34
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (210 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCAA
AGTGAAGATGCCAGA
Found at i:82989699 original size:40 final size:40
Alignment explanation
Indices: 82989654--82989821 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
82989644 CGGAATATAA
82989654 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82989694 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82989734 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
82989774 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
82989814 CCGGATAT
1 CCGGATAT
82989822 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82989804 original size:80 final size:80
Alignment explanation
Indices: 82989670--82989819 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
82989660 ATAATCACGT
*
82989670 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
82989734 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
82989750 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
82989813 CCCGGAT
64 CCCGGAT
82989820 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:82993943 original size:19 final size:20
Alignment explanation
Indices: 82993919--82993966 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
82993909 GATCAGTTGG
82993919 ACCTTT-GATTAATTAACAT
1 ACCTTTGGATTAATTAACAT
82993938 ACCTTTTTTGGATTAATTAACAT
1 ACC---TTTGGATTAATTAACAT
82993961 ACCTTT
1 ACCTTT
82993967 TTTTGAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
22 3 0.12
23 16 0.64
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (20 bp):
ACCTTTGGATTAATTAACAT
Found at i:82993951 original size:23 final size:23
Alignment explanation
Indices: 82993925--82993969 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
82993915 TTGGACCTTT
82993925 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
82993948 GATTAATTAACATACCTTTTTT
1 GATTAATTAACATACCTTTTTT
82993970 TGAATGACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49
Consensus pattern (23 bp):
GATTAATTAACATACCTTTTTTG
Found at i:82994037 original size:13 final size:13
Alignment explanation
Indices: 82994006--82994039 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
82993996 TTTGAATTTC
82994006 AATTT-ATTTAAT
1 AATTTAATTTAAT
82994018 AATTTTAATTTAAT
1 AA-TTTAATTTAAT
82994032 AATTTAAT
1 AATTTAAT
82994040 CCAATGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 2 0.10
13 9 0.45
14 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTAATTTAAT
Found at i:82996118 original size:23 final size:24
Alignment explanation
Indices: 82996080--82996124 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
82996070 TTTTCTCTTC
*
82996080 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
82996104 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
82996125 ACCTTACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:82996416 original size:54 final size:54
Alignment explanation
Indices: 82996214--82996446 Score: 227
Period size: 53 Copynumber: 4.4 Consensus size: 54
82996204 CATGACTTTT
* * * *
82996214 CATGGTCTTACGTGGTATCCTT---TT-GAAACTTACC-ATTTCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATTGCCATGCCTTGA
* *
82996263 CATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAA-TGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTA-GAAACTTACCAATTGCCATGCCTTGA
* * * * *
82996316 CATGGTCTTACATGG-AACCTTTGCCTTATAGTAACTTA-TAAATGCCAT-TCTTGA
1 CATGGTCTTACATGGTATCC-TTGCC-T-TAGAAACTTACCAATTGCCATGCCTTGA
*
82996370 CATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTAGAAA-CTTACCAATTGCCATGCCTTGA
82996425 CATGGTCTTAC-TGGGTATCCTT
1 CATGGTCTTACAT-GGTATCCTT
82996447 TAACCCTAAT
Statistics
Matches: 151, Mismatches: 17, Indels: 26
0.78 0.09 0.13
Matches are distributed among these distances:
49 21 0.14
52 10 0.07
53 41 0.27
54 39 0.26
55 40 0.26
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTAGAAACTTACCAATTGCCATGCCTTGA
Found at i:83003034 original size:11 final size:11
Alignment explanation
Indices: 83003018--83003042 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83003008 AGAGTGGTGC
83003018 GTGCTATAGAT
1 GTGCTATAGAT
83003029 GTGCTATAGAT
1 GTGCTATAGAT
83003040 GTG
1 GTG
83003043 GTTCTCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (11 bp):
GTGCTATAGAT
Found at i:83007936 original size:6 final size:6
Alignment explanation
Indices: 83007925--83007963 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
83007915 TTCAAACTCA
* *
83007925 TTTTAT TTTTAT TTTTATT TTTTAC TTTTAT TTCTAT TT
1 TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TT
83007964 ATTTTTGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:83007948 original size:13 final size:13
Alignment explanation
Indices: 83007925--83007957 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83007915 TTCAAACTCA
*
83007925 TTTTA-TTTTTAT
1 TTTTATTTTTTAC
83007937 TTTTATTTTTTAC
1 TTTTATTTTTTAC
83007950 TTTTATTT
1 TTTTATTT
83007958 CTATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTTAC
Found at i:83007953 original size:19 final size:19
Alignment explanation
Indices: 83007925--83007963 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
83007915 TTCAAACTCA
* *
83007925 TTTTATTTTTATTTTTATT
1 TTTTACTTTTATTTCTATT
83007944 TTTTACTTTTATTTCTATT
1 TTTTACTTTTATTTCTATT
83007963 T
1 T
83007964 ATTTTTGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTACTTTTATTTCTATT
Found at i:83012976 original size:49 final size:49
Alignment explanation
Indices: 83012904--83013076 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
83012894 AGGTCACGTC
* * * *
83012904 TGTAGTACTAACTACAGGCTACTACGTGTACTGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATG
* * * * * * *
83012953 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACGTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTAGTCGCATG
*
83013004 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTCGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATG
83013053 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
83013077 TGCATACCAG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 62 0.60
51 41 0.40
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATG
Found at i:83013070 original size:100 final size:100
Alignment explanation
Indices: 83012897--83013089 Score: 323
Period size: 100 Copynumber: 1.9 Consensus size: 100
83012887 TATTGTGAGG
* *
83012897 TCACGTCTGTAGTACTAACTACAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTCTGTAGTACTAACTACAGGCTACTACGTGTACCGGATAATTCGTCGCATGTGTAGTACT
* *
83012962 AAGTGCAGGCTACTATGCGTACCCGATAACGTCAA
66 AAGTGCAGGCTACTATGCATACCAGATAACGTCAA
* * *
83012997 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTCGTCGCATGTGTAGTACT
1 TCACGTCTGTAGTACTAACTACAGGCTACTACGTGTACCGGATAATTCGTCGCATGTGTAGTACT
83013062 AAGTGCAGGCTACTATGCATACCAGATA
66 AAGTGCAGGCTACTATGCATACCAGATA
83013090 GCTTTTGCTA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACGTCTGTAGTACTAACTACAGGCTACTACGTGTACCGGATAATTCGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACGTCAA
Found at i:83015201 original size:32 final size:32
Alignment explanation
Indices: 83015165--83015237 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
83015155 TGAGATTTAT
83015165 GTTGAATGAGTTTCCAGGTGAGAAACCAAAGA
1 GTTGAATGAGTTTCCAGGTGAGAAACCAAAGA
83015197 GTTGAATGAGTTTCCAGGTGAGAAACCAAAGA
1 GTTGAATGAGTTTCCAGGTGAGAAACCAAAGA
*
83015229 GTTCAATGA
1 GTTGAATGA
83015238 TGGAATGGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.23
Consensus pattern (32 bp):
GTTGAATGAGTTTCCAGGTGAGAAACCAAAGA
Found at i:83017764 original size:50 final size:51
Alignment explanation
Indices: 83017635--83017764 Score: 172
Period size: 51 Copynumber: 2.6 Consensus size: 51
83017625 ACCTATTGTG
*
83017635 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAACTT
* * * * **
83017686 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAACTT
* *
83017736 AGGTCACGTTTGTAGTACTAAATGCAGGC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGC
83017765 AACTGAGTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 27 0.40
51 41 0.60
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAACTT
Found at i:83019548 original size:21 final size:20
Alignment explanation
Indices: 83019519--83019557 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
83019509 ATTCATTTTT
83019519 ATTGTGTTATGAATGTATGGTA
1 ATTGTGTTAT-AATG-ATGGTA
83019541 ATTG-GTTATAATGATGG
1 ATTGTGTTATAATGATGG
83019558 AATAAATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 5 0.29
22 4 0.24
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (20 bp):
ATTGTGTTATAATGATGGTA
Found at i:83022606 original size:33 final size:34
Alignment explanation
Indices: 83022519--83022611 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 34
83022509 GTAGTAACAG
* * * * *
83022519 TCTGGGCCTGAGCCTTATTCAATAATCAATACAG
1 TCTGGGCCTTAGCCCTATACAGTAATCAATACAA
* * * *
83022553 TCTGCGACTTGGCCCTATACAGTAA-CAGTACAA
1 TCTGGGCCTTAGCCCTATACAGTAATCAATACAA
83022586 TCTGGGCCTTAGCCCTATACAGTAAT
1 TCTGGGCCTTAGCCCTATACAGTAAT
83022612 AGTGTAATGT
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
33 28 0.61
34 18 0.39
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCTATACAGTAATCAATACAA
Found at i:83022657 original size:21 final size:21
Alignment explanation
Indices: 83022633--83022677 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
83022623 ATAATGCATC
* *
83022633 CCACCCAATCCAGCCAGCACA
1 CCACCCAATCCAACCAACACA
* *
83022654 CCACTCATTCCAACCAACACA
1 CCACCCAATCCAACCAACACA
83022675 CCA
1 CCA
83022678 TGTGGGGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.51, G:0.04, T:0.09
Consensus pattern (21 bp):
CCACCCAATCCAACCAACACA
Found at i:83026071 original size:13 final size:13
Alignment explanation
Indices: 83026053--83026085 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
83026043 TTTTTATTTC
83026053 ATTATATTTTATT
1 ATTATATTTTATT
83026066 ATTATATTTTATT
1 ATTATATTTTATT
*
83026079 ATCATAT
1 ATTATAT
83026086 GAAATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTATATTTTATT
Found at i:83026364 original size:28 final size:28
Alignment explanation
Indices: 83026332--83026415 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
83026322 AACTTCGATC
83026332 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
83026360 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
83026382 ACGTGTGTAATACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
83026410 ACGTGT
1 ACGTGT
83026416 ACCAGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 1 0.02
22 8 0.20
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:83026438 original size:99 final size:99
Alignment explanation
Indices: 83026231--83026459 Score: 300
Period size: 99 Copynumber: 2.3 Consensus size: 99
83026221 TATTGTGAGG
* * * * *
83026231 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGTAATTGGTCGCATGTCTAGTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAATTGGTCACATGTCTAATACTA
*
83026296 AGTGCAGGCTACTATGCGTACCAGATAACTTCGA
66 AGTGCAGGCTACTACGCGTACCAGATAACTTCGA
* ** * *
83026330 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAATAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAATT-GGTCACATGTCTAATAC
* *
83026395 TAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GG
64 TAAGTGCAGGCTACTACGCGTACCAGATAACTTCGA
*
83026429 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
83026460 TGCGTACTAG
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 67 0.58
100 7 0.06
101 41 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAATTGGTCACATGTCTAATACTA
AGTGCAGGCTACTACGCGTACCAGATAACTTCGA
Found at i:83029571 original size:15 final size:15
Alignment explanation
Indices: 83029553--83029585 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
83029543 TGGATTCTCG
83029553 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
83029568 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
83029583 TAT
1 TAT
83029586 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:83032525 original size:100 final size:98
Alignment explanation
Indices: 83032347--83032575 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 98
83032337 TATTGTGAGG
* * * *
83032347 TCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* * * *
83032412 AAGTGCAGGCTACTATGCGTGCCCGATAACTTCGA
66 AAGTGCAGACTACTACGCGTACCAGATAA-TT-GA
* * * *
83032447 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTTAGGTCACGTTTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
83032511 TAAGTGCAGACTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGACTACTACGCGTACCAGATAATTGA
*
83032545 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
83032576 TGCGTACTAG
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
98 31 0.27
99 4 0.04
100 78 0.69
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGACTACTACGCGTACCAGATAATTGA
Found at i:83032588 original size:49 final size:50
Alignment explanation
Indices: 83032344--83032575 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
83032334 GTCTATTGTG
* * *
83032344 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
83032394 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTGCCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
83032444 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
83032493 AGGTCACGTTTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
83032543 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
83032576 TGCGTACTAG
Statistics
Matches: 153, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 111 0.73
50 4 0.03
51 38 0.25
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:83032618 original size:149 final size:149
Alignment explanation
Indices: 83032344--83032621 Score: 400
Period size: 149 Copynumber: 1.9 Consensus size: 149
83032334 GTCTATTGTG
* *
83032344 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGACTACCACGTGTACCAGATAATTGGTCGCATGTGTAGT
* * * * *
83032409 ACTAAGTGCAGGCTACTATGCGTGCCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCT
83032474 ACTACGTGTATCAGATGTT
131 ACTACGTGTATCAGATGTT
* *
83032493 AGGTCACGTTTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGACTACCACGTGTACCAGATAATTGGTCGCATGTGTAGT
* * *
83032558 ACTAAGTGCAGGCTACTATGCGTACTAGATAGCCTT-G-TCTACAAGTGT-GAAAATATGTGCAG
66 ACTAAGTGCAGGCTACTATGCGTACCAGATA-ACTTCGATC-ACAAGTGTAG-AAATAAGTGCAG
83032620 GC
128 GC
83032622 AACTGAGTAT
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
148 3 0.03
149 108 0.95
150 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (149 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGACTACCACGTGTACCAGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCT
ACTACGTGTATCAGATGTT
Found at i:83057116 original size:46 final size:46
Alignment explanation
Indices: 83057066--83057241 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
83057056 TGGTTGAGCA
83057066 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83057112 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
83057157 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
83057205 CCCGAGCTCGTTGAGTTGAGTCCGACTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83057242 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83057222 original size:93 final size:93
Alignment explanation
Indices: 83057063--83057234 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
83057053 GGATGGTTGA
* *
83057063 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
83057128 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGACTTCGTGAGATGTAACTAG
* *
83057156 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83057221 TGAGTCCGACTTCG
66 TGAGTCCGACTTCG
83057235 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGACTTCGTGAGATGTAACTAG
Found at i:83064649 original size:46 final size:46
Alignment explanation
Indices: 83064599--83064774 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83064589 TGGTTGAGCA
83064599 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83064645 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83064690 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83064738 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83064775 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83064755 original size:93 final size:93
Alignment explanation
Indices: 83064596--83064767 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83064586 GGATGGTTGA
* *
83064596 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83064661 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83064689 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83064754 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83064768 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83069164 original size:28 final size:28
Alignment explanation
Indices: 83069124--83069193 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
83069114 ATAGTAAGTC
*
83069124 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
83069152 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
83069180 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83069194 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:83079035 original size:39 final size:39
Alignment explanation
Indices: 83078954--83079116 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
83078944 TATGGTAACC
* *
83078954 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
83078994 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83079033 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83079072 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
83079111 CGCACA
1 CGCACA
83079117 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:83086951 original size:39 final size:39
Alignment explanation
Indices: 83086870--83087031 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
83086860 TATGGTAACC
* *
83086870 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
83086910 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83086949 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83086988 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-AATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
83087026 CGCACA
1 CGCACA
83087032 TTCATACACA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 9 0.08
39 87 0.77
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:83091200 original size:33 final size:33
Alignment explanation
Indices: 83091158--83091223 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
83091148 ATGATTAAAA
* *
83091158 TATATTAAACTAAATGCAATGATCCTTGATGTG
1 TATATTAAACTAAACGCAATGATCCCTGATGTG
83091191 TATATTAAACTAAACGCAATGATCCCTGATGTG
1 TATATTAAACTAAACGCAATGATCCCTGATGTG
83091224 ATTTACCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (33 bp):
TATATTAAACTAAACGCAATGATCCCTGATGTG
Found at i:83099400 original size:32 final size:32
Alignment explanation
Indices: 83099364--83099428 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
83099354 GATAAGTTTA
*
83099364 TTTGTATATGGCTTACTAAGCTTTTGAAAGCT
1 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
83099396 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
1 TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
83099428 T
1 T
83099429 ACTTTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (32 bp):
TTTGTATATGGCGTACTAAGCTTTTGAAAGCT
Found at i:83100288 original size:15 final size:15
Alignment explanation
Indices: 83100268--83100298 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83100258 ATCAAGCAAG
83100268 TTCTAGAATAACAAT
1 TTCTAGAATAACAAT
83100283 TTCTAGAATAACAAT
1 TTCTAGAATAACAAT
83100298 T
1 T
83100299 CGATACTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (15 bp):
TTCTAGAATAACAAT
Found at i:83102058 original size:55 final size:55
Alignment explanation
Indices: 83101966--83102080 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
83101956 GCCTACGCCT
*
83101966 GTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGTGTGTCGCACG-TCC
1 GTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGCGTGTCGCACGCT-C
* * * * *
83102021 GTGTTAATTTGTCAGGTTTGGCCACTGTTTC-CAGGCACGGGCGTGTCGCACGCTC
1 GTGTTAATCTGACAGGTTTGCCCACGGTTGCTC-GGCACGGGCGTGTCGCACGCTC
83102076 GTGTT
1 GTGTT
83102081 GTTTTGGCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 1 0.02
55 50 0.96
56 1 0.02
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.30
Consensus pattern (55 bp):
GTGTTAATCTGACAGGTTTGCCCACGGTTGCTCGGCACGGGCGTGTCGCACGCTC
Found at i:83109470 original size:44 final size:43
Alignment explanation
Indices: 83109379--83109500 Score: 190
Period size: 44 Copynumber: 2.8 Consensus size: 43
83109369 ATTTATTTAA
83109379 AAAAGCACTGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCACTGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
* * *
83109422 AAAAGCGCTGCTAAAAGTAATGGCTATTTAGCGGCGTTTGTGGT
1 AAAAGCACTGCTAAAAGTCATGGCT-TTTAGCGGCGTTTGTGGG
* *
83109466 AAAAGCACCGCTAAAAGTCTTGGCTTTTAGCGGCG
1 AAAAGCACTGCTAAAAGTCATGGCTTTTAGCGGCG
83109501 CTTTTTTTGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
43 33 0.46
44 38 0.54
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (43 bp):
AAAAGCACTGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
Found at i:83109520 original size:43 final size:43
Alignment explanation
Indices: 83109379--83109549 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
83109369 ATTTATTTAA
* * * *
83109379 AAAAGCACTGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTTTTGG
* * *
83109422 AAAAGCGCTGCTAAAAGTAATGGCTATTTAGCGGCG-TTTGTGG
1 AAAAGCGCCGCTAAAAGTCATGGCT-TTTAGCGGCGTTTTTTGG
* * *
83109465 TAAAAGCACCGCTAAAAGTCTTGGCTTTTAGCGGCGCTTTTTTTG
1 -AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCG-TTTTTTGG
* * ** *
83109510 CAAA-CGCCGCTAAAAGCCATTACTTTTAGCGGCGCTTTTT
1 AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTTTT
83109550 CCACAAACGC
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
42 5 0.05
43 62 0.58
44 34 0.32
45 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTTTTGG
Found at i:83109964 original size:21 final size:21
Alignment explanation
Indices: 83109935--83110028 Score: 102
Period size: 21 Copynumber: 4.5 Consensus size: 21
83109925 TGCTGCCATT
*
83109935 GCTGCTGCCTCTACCTCCCTC
1 GCTGCTGCCTCTGCCTCCCTC
*
83109956 GCT-CGTGCCTCTGCCTCTCTC
1 GCTGC-TGCCTCTGCCTCCCTC
*
83109977 GCTGCTGCCGCTGCCTCCCTC
1 GCTGCTGCCTCTGCCTCCCTC
* *
83109998 GCTGCCG-CTGCTACCTCCCTC
1 GCTGCTGCCT-CTGCCTCCCTC
*
83110019 TCTGCTGCCT
1 GCTGCTGCCT
83110029 TCGCTCTAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.03
21 55 0.92
22 3 0.05
ACGTcount: A:0.02, C:0.50, G:0.19, T:0.29
Consensus pattern (21 bp):
GCTGCTGCCTCTGCCTCCCTC
Found at i:83110470 original size:13 final size:14
Alignment explanation
Indices: 83110445--83110473 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83110435 TGATGAATTG
83110445 AATTAAACAATTAT
1 AATTAAACAATTAT
83110459 AATTAAAC-ATTAT
1 AATTAAACAATTAT
83110472 AA
1 AA
83110474 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:83110662 original size:17 final size:16
Alignment explanation
Indices: 83110640--83110678 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
83110630 AAAATATTAT
83110640 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
83110657 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
83110673 TTAATA
1 TTAATA
83110679 AATTCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:83114267 original size:36 final size:36
Alignment explanation
Indices: 83114216--83114291 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
83114206 AAGTAAGCTT
* *
83114216 TGTAAGTTATCTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATCTAAGTTATGATATGATATACATTTA
* *
83114252 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATCTAAGTTATGATATGATATACATTTA
83114288 TGTA
1 TGTA
83114292 TTATGTAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (36 bp):
TGTAAGGTATCTAAGTTATGATATGATATACATTTA
Found at i:83114308 original size:43 final size:43
Alignment explanation
Indices: 83114249--83114425 Score: 219
Period size: 43 Copynumber: 3.9 Consensus size: 43
83114239 TGATATACAT
* *
83114249 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
83114292 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
* *
83114335 TTTTGTAAGGTATATAAGTTATGTAAGTTATTATATGATATATATTTATGTA
1 TTATGTAA-G--T-T--G---TGTAAGTTATGATATGATATATATTTATGTA
* *
83114387 TTATGTAAGTTTTGTAAGTTATTATATGATATATATTTA
1 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTA
83114426 ACATTAAGAT
Statistics
Matches: 119, Mismatches: 6, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
43 75 0.63
44 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 2 0.02
51 1 0.01
52 37 0.31
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (43 bp):
TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
Found at i:83114391 original size:95 final size:95
Alignment explanation
Indices: 83114254--83114425 Score: 308
Period size: 95 Copynumber: 1.8 Consensus size: 95
83114244 TACATTTATG
83114254 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
83114319 GATATATATTTATGTATTTTGTAAGGTATA
66 GATATATATTTATGTATTTTGTAAGGTATA
* * * *
83114349 TAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATTATAT
1 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
83114414 GATATATATTTA
66 GATATATATTTA
83114426 ACATTAAGAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (95 bp):
TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATAT
GATATATATTTATGTATTTTGTAAGGTATA
Found at i:83114405 original size:52 final size:52
Alignment explanation
Indices: 83114293--83114408 Score: 178
Period size: 52 Copynumber: 2.2 Consensus size: 52
83114283 ATTTATGTAT
* *
83114293 TATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTATTTTGTAAGG
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
* * *
83114345 TATATAAGTTATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
*
83114397 TTTGTAAGTTAT
1 TATGTAAGTTAT
83114409 TATATGATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (52 bp):
TATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGG
Found at i:83114485 original size:10 final size:10
Alignment explanation
Indices: 83114470--83114494 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
83114460 ATTATTTTAA
83114470 TTAAATAAAT
1 TTAAATAAAT
83114480 TTAAATAAAT
1 TTAAATAAAT
83114490 TTAAA
1 TTAAA
83114495 AAAAATCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TTAAATAAAT
Found at i:83115197 original size:21 final size:22
Alignment explanation
Indices: 83115158--83115198 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
83115148 CTAAAATTTC
83115158 AAAATATAAAAAACCCAAAATT
1 AAAATATAAAAAACCCAAAATT
* *
83115180 AAAAT-TAAACAACTCAAAA
1 AAAATATAAAAAACCCAAAA
83115199 AATACAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAATATAAAAAACCCAAAATT
Found at i:83117666 original size:19 final size:20
Alignment explanation
Indices: 83117632--83117670 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
83117622 AAGAAATTTG
*
83117632 TCTAATATGATTAAAAATAT
1 TCTAAAATGATTAAAAATAT
83117652 TCTAAAATG-TTAAAAATAT
1 TCTAAAATGATTAAAAATAT
83117671 ATATGTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
TCTAAAATGATTAAAAATAT
Found at i:83117782 original size:24 final size:24
Alignment explanation
Indices: 83117748--83117794 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
83117738 ATACTATCTC
83117748 TATATGACTATATCCATAGCCAGA
1 TATATGACTATATCCATAGCCAGA
*
83117772 TATATGTCTATATCCATAGCCAG
1 TATATGACTATATCCATAGCCAG
83117795 GTATCTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (24 bp):
TATATGACTATATCCATAGCCAGA
Found at i:83119617 original size:21 final size:21
Alignment explanation
Indices: 83119593--83119726 Score: 76
Period size: 21 Copynumber: 6.4 Consensus size: 21
83119583 ATTAACCACA
83119593 TAAACCCTAAACTCTAAACCC
1 TAAACCCTAAACTCTAAACCC
* ** * *
83119614 TAAACCATAATTTATTAACCC
1 TAAACCCTAAACTCTAAACCC
* * * *
83119635 CAAACCAC-AAGCCCCAAACTCC
1 TAAACC-CTAAACTCTAAAC-CC
* * *
83119657 -AAACCCTATATTCTAAACAC
1 TAAACCCTAAACTCTAAACCC
* *
83119677 TAAACCCTAAAACTATAAACCT
1 TAAACCCT-AAACTCTAAACCC
* *
83119699 TACA-CATAAACTCTAAACCC
1 TAAACCCTAAACTCTAAACCC
83119719 TAAACCCT
1 TAAACCCT
83119727 TAAGCCGTAT
Statistics
Matches: 77, Mismatches: 30, Indels: 12
0.65 0.25 0.10
Matches are distributed among these distances:
20 16 0.21
21 48 0.62
22 13 0.17
ACGTcount: A:0.44, C:0.34, G:0.01, T:0.21
Consensus pattern (21 bp):
TAAACCCTAAACTCTAAACCC
Found at i:83120012 original size:21 final size:21
Alignment explanation
Indices: 83119980--83120027 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
83119970 ACCCCACAAT
**
83119980 CCCTAATCCATAATCCATAAA
1 CCCTAATCCATAAAACATAAA
83120001 CCCTGAAT-CATAAAACATAAA
1 CCCT-AATCCATAAAACATAAA
*
83120022 CTCTAA
1 CCCTAA
83120028 ACCCCTAACC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 18 0.78
22 3 0.13
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (21 bp):
CCCTAATCCATAAAACATAAA
Found at i:83120909 original size:11 final size:12
Alignment explanation
Indices: 83120882--83120911 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83120872 CGCTTTTATA
83120882 AAAAACGCCGCT
1 AAAAACGCCGCT
*
83120894 AAAAATGCCGCT
1 AAAAACGCCGCT
83120906 AAAAAC
1 AAAAAC
83120912 CTATTTTGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.27, G:0.13, T:0.10
Consensus pattern (12 bp):
AAAAACGCCGCT
Found at i:83123962 original size:15 final size:15
Alignment explanation
Indices: 83123944--83123972 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83123934 ATATTTATAA
83123944 AATTATTATTATTAT
1 AATTATTATTATTAT
83123959 AATTATTATTATTA
1 AATTATTATTATTA
83123973 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:83126265 original size:60 final size:59
Alignment explanation
Indices: 83126192--83126328 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
83126182 AACTGTGTTA
* * *
83126192 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
83126252 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
83126312 ATATGGGCTATGGCCCA
1 ATATGGGCTA-GGCCCA
83126329 GTTAACACTG
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.78
61 14 0.21
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:83128220 original size:132 final size:130
Alignment explanation
Indices: 83127975--83128260 Score: 346
Period size: 132 Copynumber: 2.2 Consensus size: 130
83127965 TAATTATTCA
* * *
83127975 TTTAAAAATTCTTTAAAACGAAGGCGATGCCCGATATTTGACAATTCGCGAAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAATGAAGGCAACGCCCGATATTTGACAATTCGCGAAATCGTGCCCTATC
** * *
83128040 GTGCTGGGTTGCAATTTCTCATTTGCTCTCAATAATCGAATGACCCTTTTGGAATTTCATTCATG
66 GTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATGACCC-TTTAGAATTTCACTCATG
83128105 TC
130 -C
* * * * *
83128107 TTTAAAAATTCTTTAAAATGAAGGCAACGCCCTATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAATGAAGGCAACGCCCGATATTTGACAATTCGCGAAATCGTGCCCTATC
** * **
83128172 GTGCTGGGTTGCAATTTCTTGTTTGTTCAAAATAATC-AATTGTTCCTTTAGAATTTCACTCATG
66 GTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAA-TGACCCTTTAGAATTTCACTCATG
83128236 C
130 C
**
83128237 TTTCTAAATTC--TAAAAT-AAGGCAA
1 TTTAAAAATTCTTTAAAATGAAGGCAA
83128261 TGTTCAATGT
Statistics
Matches: 134, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
127 7 0.05
128 6 0.04
130 10 0.07
131 18 0.13
132 93 0.69
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (130 bp):
TTTAAAAATTCTTTAAAATGAAGGCAACGCCCGATATTTGACAATTCGCGAAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAATCGAATGACCCTTTAGAATTTCACTCATGC
Found at i:83130034 original size:26 final size:26
Alignment explanation
Indices: 83130005--83130064 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
83129995 TCCCTTTGAA
* * *
83130005 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
83130031 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
83130059 CCATTC
1 TCATTC
83130065 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:83130050 original size:28 final size:28
Alignment explanation
Indices: 83130019--83130090 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
83130009 TCGATATTTT
*
83130019 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
83130047 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
83130075 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
83130091 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:83134265 original size:38 final size:38
Alignment explanation
Indices: 83134222--83134393 Score: 202
Period size: 38 Copynumber: 4.5 Consensus size: 38
83134212 TTTAAACTCA
* * *
83134222 GATATAATACTAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
* * *
83134260 CATATAATACCAGTACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
*
83134298 GATATATTACCAGCACAAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
* * * *
83134336 GATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCACAAAGCCTGCGGG-ATTTAA-CCCG
*
83134376 GATACAAT-CTCAGCACAA
1 GATATAATAC-CAGCACAA
83134394 TTTATTTTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 91 0.80
39 6 0.05
40 17 0.15
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (38 bp):
GATATAATACCAGCACAAAGCCTGCGGGATTTAACCCG
Found at i:83134278 original size:78 final size:76
Alignment explanation
Indices: 83134185--83134350 Score: 197
Period size: 76 Copynumber: 2.2 Consensus size: 76
83134175 AAACCCAAAC
* * * * * * *
83134185 ATAACACCAGCACGAAGCGTATGGGACTTTAAACTCAGATATAATACTAGCACTAGGCCTGCGGG
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCAGATATAATACCAGCACAAAGCCTGCGGG
83134250 ATTTAACCCGCAT
64 ATTTAACCCGCAT
* * * *
83134263 ATAATACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACAAAGCCTGCGGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCACAAAGCCTGCGGGAT
*
83134328 TTAACCCGGAT
66 TTAACCCGCAT
*
83134339 ATAATTCCAGCA
1 ATAATACCAGCA
83134351 TATAGCCTGC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
76 50 0.68
77 3 0.04
78 21 0.28
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (76 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCACAAAGCCTGCGGGAT
TTAACCCGCAT
Found at i:83137308 original size:27 final size:28
Alignment explanation
Indices: 83137271--83137410 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
83137261 AGCATGGCTG
** *
83137271 CCAGA-ACAGATA-ATGTGATAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
83137297 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
83137325 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
83137352 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
83137379 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
83137406 CCAGA
1 CCAGA
83137411 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.80
28 16 0.15
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:83139067 original size:26 final size:26
Alignment explanation
Indices: 83139029--83139112 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
83139019 CATGAAATTC
* *
83139029 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
83139055 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
83139081 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
83139107 TTATCA
1 TTATCA
83139113 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:83143135 original size:24 final size:24
Alignment explanation
Indices: 83143103--83143189 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
83143093 AATCTCAAAT
83143103 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
83143127 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
83143151 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
83143175 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
83143190 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:83143155 original size:48 final size:48
Alignment explanation
Indices: 83143103--83143211 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
83143093 AATCTCAAAT
** *
83143103 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
83143151 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
83143199 GCACTATGTGTGC
1 GCACTATGTGTGC
83143212 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:83143202 original size:24 final size:24
Alignment explanation
Indices: 83143103--83143211 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
83143093 AATCTCAAAT
*
83143103 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
83143127 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
83143151 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
83143175 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
83143199 GCACTATGTGTGC
1 GCACTATGTGTGC
83143212 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:83145396 original size:28 final size:28
Alignment explanation
Indices: 83145362--83145573 Score: 163
Period size: 28 Copynumber: 7.5 Consensus size: 28
83145352 AACCGATCTT
*
83145362 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**** * *
83145390 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
83145419 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
* **** * *
83145447 ACACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
* * *
83145476 GTACACACAGTGCTTGGTTATGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
* **** * *
83145504 GCACACATAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
83145533 GCACACACAGTGCTCGGTTACGGAACCC
1 GCACACACAGTGCTCGGTTACGGAACTC
*
83145561 ACACACACAGTGC
1 GCACACACAGTGC
83145574 CTATGTTCAC
Statistics
Matches: 132, Mismatches: 49, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
28 72 0.55
29 60 0.45
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGGAACTC
Found at i:83145423 original size:57 final size:57
Alignment explanation
Indices: 83145352--83145575 Score: 367
Period size: 57 Copynumber: 3.9 Consensus size: 57
83145342 GTACCCCAAA
* * *
83145352 AACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCGCACACACAGTGCCTCAAC
1 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCTCAAC
83145409 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCTCAAC
1 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCTCAAC
* * * * *
83145466 AACCGATCTCGTACACACAGTGCTTGGTTATGGAACTCGCACACATAGTGCCTCAAC
1 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCTCAAC
*
83145523 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACCCACACACACAGTGCCT
1 AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCT
83145576 ATGTTCACTT
Statistics
Matches: 153, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 153 1.00
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (57 bp):
AACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCACACACACAGTGCCTCAAC
Found at i:83145428 original size:29 final size:29
Alignment explanation
Indices: 83145387--83145545 Score: 151
Period size: 29 Copynumber: 5.6 Consensus size: 29
83145377 GGTTACGGAA
83145387 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
**** * *
83145416 CTCGCACACACAGTG-CTCGGTTACGGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
*
83145444 CTCACACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
* ***** ** *
83145473 CTCGTACACACAGTG-CTTGGTTATGGAA
1 CTCGCACACACAGTGCCTCAACAACCGAT
*
83145501 CTCGCACACATAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCGAT
83145530 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
83145546 TCGGTTACGG
Statistics
Matches: 94, Mismatches: 34, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
28 39 0.41
29 55 0.59
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.18
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAACAACCGAT
Found at i:83147567 original size:26 final size:26
Alignment explanation
Indices: 83147538--83147597 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
83147528 TCCCTTTGAA
* * *
83147538 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
83147564 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
83147592 CCATTC
1 TCATTC
83147598 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:83147623 original size:28 final size:28
Alignment explanation
Indices: 83147552--83147623 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
83147542 TCGATATTTT
**
83147552 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTACCATTCTCAATATCTC
* *
83147580 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTACCATTCTCAATATCTC
* * *
83147608 GTACATTGAGTACCAT
1 GCACACTAAGTACCAT
83147624 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTACCATTCTCAATATCTC
Found at i:83153153 original size:31 final size:30
Alignment explanation
Indices: 83153089--83153155 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
83153079 GTCAATCTAC
83153089 ATAAATAATATACATAAAATAAAAACTTAAT
1 ATAAATAATATACATAAAATAAAAAC-TAAT
*
83153120 ATAAATAATTGATACATGAAAATACAAA-T-AT
1 ATAAATAA-T-ATACAT-AAAATAAAAACTAAT
83153151 ATAAA
1 ATAAA
83153156 AGTATTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 15 0.47
32 2 0.06
33 6 0.19
34 9 0.28
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (30 bp):
ATAAATAATATACATAAAATAAAAACTAAT
Found at i:83154398 original size:5 final size:5
Alignment explanation
Indices: 83154390--83154436 Score: 71
Period size: 5 Copynumber: 9.6 Consensus size: 5
83154380 CTAATTTAAT
83154390 AATAA AATAA AATAA AATAA AATAA AA-ATA AAT-A AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AATAA AAT
83154437 GATATCTTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 5 0.13
5 34 0.87
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:83155200 original size:262 final size:262
Alignment explanation
Indices: 83154735--83155258 Score: 1030
Period size: 262 Copynumber: 2.0 Consensus size: 262
83154725 GGTACTTCTT
83154735 TTCTTCCCCTTTAAGTAACCTCGTTCCAATCCACTATATCTTCAAAGATATAGGAATTGGTGCTT
1 TTCTTCCCCTTTAAGTAACCTCGTTCCAATCCACTATATCTTCAAAGATATAGGAATTGGTGCTT
83154800 CGATCCGCTCCAATGTAATTTCAGGGAAAAAAGATTTTTAGCTTCGATCTACTCTGCTGAAACTT
66 CGATCCGCTCCAATGTAATTTCAGGGAAAAAAGATTTTTAGCTTCGATCTACTCTGCTGAAACTT
83154865 GAAGGAGATAAGAATTGGTAATTTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGG
131 GAAGGAGATAAGAATTGGTAATTTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGG
*
83154930 TCTTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTGTCTTCGATCTACTCCACTAC
196 TCTTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGATCTACTCCACTAC
83154995 TG
261 TG
83154997 TTCTTCCCCTTTAAGTAACCTCGTTCCAATCCACTATATCTTCAAAGATATAGGAATTGGTGCTT
1 TTCTTCCCCTTTAAGTAACCTCGTTCCAATCCACTATATCTTCAAAGATATAGGAATTGGTGCTT
83155062 CGATCCGCTCCAATGTAATTTCAGGGAAAAAAGATTTTTAGCTTCGATCTACTCTGCTGAAACTT
66 CGATCCGCTCCAATGTAATTTCAGGGAAAAAAGATTTTTAGCTTCGATCTACTCTGCTGAAACTT
*
83155127 GAAGGAGATAAGAATTGGTAATTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGG
131 GAAGGAGATAAGAATTGGTAATTTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGG
83155192 TCTTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGATCTACTCCACTAC
196 TCTTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGATCTACTCCACTAC
83155257 TG
261 TG
83155259 CTTAGGGAGA
Statistics
Matches: 260, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 260 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (262 bp):
TTCTTCCCCTTTAAGTAACCTCGTTCCAATCCACTATATCTTCAAAGATATAGGAATTGGTGCTT
CGATCCGCTCCAATGTAATTTCAGGGAAAAAAGATTTTTAGCTTCGATCTACTCTGCTGAAACTT
GAAGGAGATAAGAATTGGTAATTTTAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGG
TCTTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGATCTACTCCACTAC
TG
Found at i:83155382 original size:44 final size:44
Alignment explanation
Indices: 83155298--83155627 Score: 182
Period size: 44 Copynumber: 7.5 Consensus size: 44
83155288 CCCGTTCTAT
* * * *
83155298 TGCAACTTTAGGGAGATAAGACTTGTTTCTTGAA-CTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTGGTATCTTAAATC-TGCTCCAC
* * * *
83155342 TGTAACTTCAGGGAGATAAGGCTGGTAGCTTAAATCTGCTCCAT
1 TGCAACTTCAGGGAGATAAGACTGGTATCTTAAATCTGCTCCAC
** * * * *** **
83155386 TGCCGCTACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACT-GGTATCTTAAATCTGCTCCAC
* ** * ** * * *
83155431 TACTGCTT-AGGGAGATAAAATCTGCAATTTTCAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGA-CTGGTATCTTAAATCTGCTCCAC
* *
83155475 TGCAACTTCAGGGAGATAAGACTTGTATCTTGAA-CTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTGGTATCTTAAATC-TGCTCCAC
* ** * *
83155519 TGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGGTCCAT
1 TGCAACTTCAGGGAGATAAGACTGGTATCTTAAATCTGCTCCAC
** * * * * **
83155563 TGCCGCTACATGGAGATAAGATTTGCTATCTTTGATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGA-CTGGTATCTTAAATCTGCTCCAC
* **
83155608 TACTGCTT-AGGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGA
83155628 TCTGCAATTT
Statistics
Matches: 212, Mismatches: 67, Indels: 14
0.72 0.23 0.05
Matches are distributed among these distances:
43 1 0.00
44 158 0.75
45 53 0.25
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGACTGGTATCTTAAATCTGCTCCAC
Found at i:83155398 original size:177 final size:177
Alignment explanation
Indices: 83155130--83155640 Score: 763
Period size: 177 Copynumber: 2.9 Consensus size: 177
83155120 GAAACTTGAA
* * * * *
83155130 GGAGATAAGAATTGGTAAT-TTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGTC
1 GGAGATAAGACTT-GT-ATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG-C
* * *
83155194 TTAAATCTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGATCTACTCCACTACTG
63 TTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCACTACTG
* * * * * *
83155259 CTTAGGGAGATAAGATATGCAATTTTTAGCCCGTTCTATTGCAACTTTAG
128 CTTAGGGAGATAAGATCTGCAATTTTCAGCCCGCTCCACTGCAACTTCAG
* * *
83155309 GGAGATAAGACTTGTTTCTTGAACTTGCTCCACTGTAACTTCAGGGAGATAAGGCTGGTAGCTTA
1 GGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTA
*
83155374 AATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
66 AATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTT
* * *
83155439 AGGGAGATAAAATCTGCAATTTTCAGTCTGCTCCACTGCAACTTCAG
131 AGGGAGATAAGATCTGCAATTTTCAGCCCGCTCCACTGCAACTTCAG
83155486 GGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTA
1 GGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTA
* ** *
83155551 AATCTGGTCCATTGCCGCTACATGGAGATAAGATTTGCTATCTTTGATCTGCTCCACTACTGCTT
66 AATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTT
83155616 AGGGAGATAAGATCTGCAATTTTCA
131 AGGGAGATAAGATCTGCAATTTTCA
83155641 CCAGTGTTGC
Statistics
Matches: 301, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
177 250 0.83
178 39 0.13
179 12 0.04
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (177 bp):
GGAGATAAGACTTGTATCTTGAACTTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTA
AATCTGCTCCATTGCCGCTACATGGAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTT
AGGGAGATAAGATCTGCAATTTTCAGCCCGCTCCACTGCAACTTCAG
Found at i:83155628 original size:44 final size:44
Alignment explanation
Indices: 83155155--83155628 Score: 147
Period size: 44 Copynumber: 10.7 Consensus size: 44
83155145 TAATTTTAAC
* * * **
83155155 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGGTCTTAAAT
1 CTGCTCCACTGCAGCTT-AGGGAGATAAGATTTGCT-ATCTTTGAT
* * * * * * ** *
83155200 CTGCTCCATTTCCGCTACATGGAGATAAAATTCACTATCTTCGAT
1 CTGCTCCACTGCAGCT-TAGGGAGATAAGATTTGCTATCTTTGAT
* * * * * * *
83155245 CTACTCCACTACTGCTTAGGGAGATAAGATATGCAAT-TTTTAGC
1 CTGCTCCACTGCAGCTTAGGGAGATAAGATTTGCTATCTTTGA-T
* * * * * * * *
83155289 CCGTTCTATTGCAACTTTAGGGAGATAAGACTTG-TTTC-TTGAA
1 CTGCTCCACTGCAGC-TTAGGGAGATAAGATTTGCTATCTTTGAT
* * ** * * **
83155332 CTTGCTCCACTGTAACTTCAGGGAGATAAG-GCTGGTAGCTTAAAT
1 C-TGCTCCACTGCAGCTT-AGGGAGATAAGATTTGCTATCTTTGAT
* * * * ** * *
83155377 CTGCTCCATTGCCGCTACATGGAGATAAGATTCACCATCTTCGAT
1 CTGCTCCACTGCAGCT-TAGGGAGATAAGATTTGCTATCTTTGAT
* * * * * *
83155422 CTGCTCCACTACTGCTTAGGGAGATAAAATCTGCAAT-TTTCAGT
1 CTGCTCCACTGCAGCTTAGGGAGATAAGATTTGCTATCTTTGA-T
* * *
83155466 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TATC-TTGAA
1 CTGCTCCACTGCAGCTT-AGGGAGATAAGATTTGCTATCTTTGAT
* ** * ** **
83155509 CTTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGGTGGCTTAAAT
1 C-TGCTCCACTGCAGCTT-AGGGAGATAAGATTTGCTATCTTTGAT
* * * * *
83155554 CTGGTCCATTGCCGCTACATGGAGATAAGATTTGCTATCTTTGAT
1 CTGCTCCACTGCAGCT-TAGGGAGATAAGATTTGCTATCTTTGAT
* *
83155599 CTGCTCCACTACTGCTTAGGGAGATAAGAT
1 CTGCTCCACTGCAGCTTAGGGAGATAAGAT
83155629 CTGCAATTTT
Statistics
Matches: 295, Mismatches: 115, Indels: 39
0.66 0.26 0.09
Matches are distributed among these distances:
43 14 0.05
44 165 0.56
45 115 0.39
46 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
CTGCTCCACTGCAGCTTAGGGAGATAAGATTTGCTATCTTTGAT
Found at i:83161730 original size:21 final size:21
Alignment explanation
Indices: 83161687--83161730 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
83161677 GAAATGCAAG
*
83161687 AAAAGAATATTTGCTCAGGAT
1 AAAAGAATATTTGCTCAGAAT
*
83161708 AAAAGAATATTTGCTTAGAAT
1 AAAAGAATATTTGCTCAGAAT
83161729 AA
1 AA
83161731 GACATAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.30
Consensus pattern (21 bp):
AAAAGAATATTTGCTCAGAAT
Found at i:83170602 original size:16 final size:16
Alignment explanation
Indices: 83170581--83170622 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
83170571 CTAATTTAAT
*
83170581 AATAAAATAAAATAAA
1 AATAAAATAAAACAAA
83170597 AAT-AAATAAAAACAAA
1 AATAAAAT-AAAACAAA
83170613 AATAAAATAA
1 AATAAAATAA
83170623 TATCTTCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 4 0.17
16 15 0.65
17 4 0.17
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (16 bp):
AATAAAATAAAACAAA
Done.