Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 28 of 345
Found at i:8843948 original size:23 final size:25
Alignment explanation
Indices: 8843904--8843949 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
8843894 ATAAATATAC
*
8843904 ATAAAATATATGGAAATGATGAAGG
1 ATAAAATATATGGAAATAATGAAGG
*
8843929 ATAAAATAT-T-GATATAATGAA
1 ATAAAATATATGGAAATAATGAA
8843950 ATGAATGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 1 0.05
25 9 0.47
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.28
Consensus pattern (25 bp):
ATAAAATATATGGAAATAATGAAGG
Found at i:8850873 original size:25 final size:23
Alignment explanation
Indices: 8850817--8850873 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
8850807 GATAATAAAG
8850817 AACGCATAACAAATAAAAATCAAT
1 AACG-ATAACAAATAAAAATCAAT
*
8850841 AACTATAACAAGATAAACAAAT-AAT
1 AACGATAACAA-AT-AA-AAATCAAT
8850866 AACGATAA
1 AACGATAA
8850874 ATACGAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 5 0.18
25 12 0.43
26 4 0.14
ACGTcount: A:0.63, C:0.14, G:0.05, T:0.18
Consensus pattern (23 bp):
AACGATAACAAATAAAAATCAAT
Found at i:8851161 original size:33 final size:38
Alignment explanation
Indices: 8851122--8851203 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
8851112 GTAAAAACAC
8851122 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAACAGGGTATTAGTAATAAT
*
8851155 AATAGTAATAATGATGATAACAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAACAG-GGTATTAGTAATAAT
*
8851194 AATAATAATA
1 AATAGTAATA
8851204 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.01, G:0.13, T:0.33
Consensus pattern (38 bp):
AATAGTAATAATAATGATAACAGGGTATTAGTAATAAT
Found at i:8851212 original size:19 final size:18
Alignment explanation
Indices: 8851188--8851229 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
8851178 TGGTATTAGT
*
8851188 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
8851207 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
8851225 AATAA
1 AATAA
8851230 CTCTCTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:8851622 original size:13 final size:13
Alignment explanation
Indices: 8851606--8851633 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8851596 GTTGGGATAA
8851606 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
8851619 TTTAGTGGGGTGG
1 TTTAGTGGGGTGG
8851632 TT
1 TT
8851634 GGAGTGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.50, T:0.43
Consensus pattern (13 bp):
TTTAGTGGGGTGG
Found at i:8851666 original size:9 final size:9
Alignment explanation
Indices: 8851652--8851680 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8851642 GATATTTAGA
8851652 TTTTTTTAT
1 TTTTTTTAT
8851661 TTTTTTTAT
1 TTTTTTTAT
8851670 TTTTTTTAT
1 TTTTTTTAT
8851679 TT
1 TT
8851681 CATAAATGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:8855463 original size:27 final size:27
Alignment explanation
Indices: 8855415--8855467 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
8855405 AACTTTTAAT
**
8855415 TTTTTTTTACTTTGTTTTTATTTTTTA
1 TTTTTTTTACTTTGTTAATATTTTTTA
8855442 TTTTTTTTACTTT-TGTAATATTTTTT
1 TTTTTTTTACTTTGT-TAATATTTTTT
8855468 TTACTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (27 bp):
TTTTTTTTACTTTGTTAATATTTTTTA
Found at i:8855489 original size:21 final size:19
Alignment explanation
Indices: 8855438--8855490 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
8855428 GTTTTTATTT
8855438 TTTATTTTTTTTACTTTTG
1 TTTATTTTTTTTACTTTTG
*
8855457 TAATATTTTTTTTACTTTTTG
1 T-TTATTTTTTTTAC-TTTTG
*
8855478 TTTATTTATTTTA
1 TTTATTTTTTTTA
8855491 TTTATTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 22 0.76
21 6 0.21
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (19 bp):
TTTATTTTTTTTACTTTTG
Found at i:8855551 original size:25 final size:22
Alignment explanation
Indices: 8855534--8855578 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
8855524 ATTTGAAATG
8855534 TTTTATAATATATATATTTAAAA
1 TTTTA-AATATATATATTTAAAA
8855557 TTTT-AA-ATATATATTTAAAA
1 TTTTAAATATATATATTTAAAA
8855577 TT
1 TT
8855579 ATTTTTCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 16 0.73
21 2 0.09
23 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTAAATATATATATTTAAAA
Found at i:8855637 original size:33 final size:33
Alignment explanation
Indices: 8855554--8855644 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
8855544 TATATATTTA
*
8855554 AAATTTTAAATA-TATATTTAAAATTATTTTTCT
1 AAATTTTAAATATTAT-TTTTAAATTATTTTTCT
* *
8855587 AAA-TTTAAATATTATTTTTTAATTATTTTTTT
1 AAATTTTAAATATTATTTTTAAATTATTTTTCT
8855619 AAATTTTAAATATTATTTTTAAATTA
1 AAATTTTAAATATTATTTTTAAATTA
8855645 AATATATTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
32 25 0.48
33 27 0.52
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (33 bp):
AAATTTTAAATATTATTTTTAAATTATTTTTCT
Found at i:8855638 original size:32 final size:32
Alignment explanation
Indices: 8855554--8855640 Score: 122
Period size: 32 Copynumber: 2.7 Consensus size: 32
8855544 TATATATTTA
**
8855554 AAATTTTAAATATATATTTAAAATTATTTTTCT
1 AAATTTTAAATAT-TATTTTTAATTATTTTTCT
*
8855587 AAA-TTTAAATATTATTTTTTAATTATTTTTTT
1 AAATTTTAAATATTA-TTTTTAATTATTTTTCT
8855619 AAATTTTAAATATTATTTTTAA
1 AAATTTTAAATATTATTTTTAA
8855641 ATTAAATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
31 2 0.04
32 33 0.67
33 14 0.29
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (32 bp):
AAATTTTAAATATTATTTTTAATTATTTTTCT
Found at i:8855759 original size:18 final size:18
Alignment explanation
Indices: 8855603--8855759 Score: 57
Period size: 20 Copynumber: 7.9 Consensus size: 18
8855593 AAATATTATT
*
8855603 TTTTAATTATTTTTTTAAA
1 TTTTAAATA-TTTTTTAAA
8855622 TTTTAAATATTATTTTTAAA
1 TTTTAAATA-T-TTTTTAAA
*
8855642 -TTAAATATATTTTTTAATA
1 TTTTAA-ATATTTTTTAA-A
* * * *
8855661 ATATAAA-ATATTTAAATA
1 TTTTAAATATTTTTTAA-A
*
8855679 TTTTAAAGATATTACCTTTCAAA
1 TTTT-AA-ATATT---TTTTAAA
* * *
8855702 TTTATTATTAGTTTTATAATA
1 TTT-TAAATA-TTTTTTAA-A
*
8855723 TTTTAAATGTATATTTTAAA
1 TTTTAAA--TATTTTTTAAA
8855743 TTTTAAATATTTTTTAA
1 TTTTAAATATTTTTTAA
8855760 TTTGTTTTAT
Statistics
Matches: 104, Mismatches: 19, Indels: 31
0.68 0.12 0.20
Matches are distributed among these distances:
18 27 0.26
19 19 0.18
20 29 0.28
21 12 0.12
22 4 0.04
23 7 0.07
24 6 0.06
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTTAAATATTTTTTAAA
Found at i:8855777 original size:21 final size:21
Alignment explanation
Indices: 8855743--8855800 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
8855733 ATATTTTAAA
*
8855743 TTTTAAATATTTTTTAATTTG
1 TTTTAAATATTTTTAAATTTG
8855764 TTTTATAATA-TTTTAAATTATG
1 TTTTA-AATATTTTTAAATT-TG
8855786 ATTTTTAAATTATTT
1 --TTTTAAA-TATTT
8855801 AAAATATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 13 0.43
22 6 0.20
23 2 0.07
24 7 0.23
25 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TTTTAAATATTTTTAAATTTG
Found at i:8855799 original size:24 final size:24
Alignment explanation
Indices: 8855764--8855819 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
8855754 TTTTAATTTG
*
8855764 TTTTATAATATTTTAAAT-TATGAT
1 TTTTA-AATATTTAAAATATATGAT
*
8855788 TTTTAAATTATTTAAAATATATTAT
1 TTTTAAA-TATTTAAAATATATGAT
8855813 TTTTAAA
1 TTTTAAA
8855820 GATATAACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 14 0.50
25 12 0.43
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTAAATATTTAAAATATATGAT
Found at i:8855901 original size:12 final size:13
Alignment explanation
Indices: 8855883--8855934 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 13
8855873 TAAATGTTTT
8855883 TTAATTTTAAATA
1 TTAATTTTAAATA
8855896 -TAATTTTTATAAATTA
1 TTAA--TTT-TAAA-TA
8855912 TTAATTTTAAA-A
1 TTAATTTTAAATA
8855924 TTAATTTTAAA
1 TTAATTTTAAA
8855935 GATATTCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
12 15 0.44
14 7 0.21
15 7 0.21
16 2 0.06
17 3 0.09
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAATTTTAAATA
Found at i:8856060 original size:16 final size:16
Alignment explanation
Indices: 8856039--8856089 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
8856029 ACTTTTTTAT
8856039 ATTTTTTAATATAATA
1 ATTTTTTAATATAATA
*
8856055 ATTTTTT-ATATAACAA
1 ATTTTTTAATATAA-TA
*
8856071 ATTTTTTAAAATTAATA
1 ATTTTTTAATA-TAATA
8856088 AT
1 AT
8856090 AAAAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 6 0.21
16 15 0.52
17 5 0.17
18 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTTTAATATAATA
Found at i:8856101 original size:19 final size:21
Alignment explanation
Indices: 8856077--8856125 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
8856067 ACAAATTTTT
*
8856077 TAAAATTAAT-AATAAAAA-A
1 TAAAATAAATAAATAAAAAGA
8856096 TAAAATAAATAAATAAAAAGA
1 TAAAATAAATAAATAAAAAGA
*
8856117 TAATATAAA
1 TAAAATAAA
8856126 AATAGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 8 0.31
21 9 0.35
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAAATAAATAAATAAAAAGA
Found at i:8856137 original size:11 final size:11
Alignment explanation
Indices: 8856078--8856138 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
8856068 CAAATTTTTT
*
8856078 AAAATTAATAA
1 AAAAATAATAA
*
8856089 TAAAA-AATAA
1 AAAAATAATAA
8856099 AATAAATAAATAA
1 AA-AAAT-AATAA
* *
8856112 AAAGATAATAT
1 AAAAATAATAA
*
8856123 AAAAATAGTAA
1 AAAAATAATAA
8856134 AAAAA
1 AAAAA
8856139 AGGAAACAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
10 6 0.15
11 23 0.59
12 3 0.08
13 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
AAAAATAATAA
Found at i:8856433 original size:15 final size:16
Alignment explanation
Indices: 8856406--8856435 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8856396 TAATATTAAA
8856406 TTATTTTTAAATTTTT
1 TTATTTTTAAATTTTT
8856422 TTATTTTT-AATTTT
1 TTATTTTTAAATTTT
8856436 AAGTAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTAAATTTTT
Found at i:8858410 original size:20 final size:20
Alignment explanation
Indices: 8858363--8858423 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
8858353 TAATAGTTAT
* *
8858363 TATATTAATAC-TTATAAAA
1 TATATTATTACATTATATAA
*
8858382 TATATTATTTCATTATATAA
1 TATATTATTACATTATATAA
8858402 TACTA-TATTACA-TACTATAA
1 TA-TATTATTACATTA-TATAA
8858422 TA
1 TA
8858424 GTAAAGTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 11 0.31
20 22 0.63
21 2 0.06
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
TATATTATTACATTATATAA
Found at i:8861816 original size:17 final size:18
Alignment explanation
Indices: 8861794--8861827 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8861784 CAATTTGGGC
8861794 CGTGTG-AGCCACACGGG
1 CGTGTGCAGCCACACGGG
*
8861811 CGTGTGCGGCCACACGG
1 CGTGTGCAGCCACACGG
8861828 TTAAAGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.32, G:0.41, T:0.12
Consensus pattern (18 bp):
CGTGTGCAGCCACACGGG
Found at i:8862226 original size:40 final size:40
Alignment explanation
Indices: 8862177--8862270 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
8862167 TACGATACCT
* * *
8862177 CTTGATGTGTAGGGTTAGATGGGTTGATTTTATCCCCATA
1 CTTGGTGTGTAGGGTTAGATGGGTCGATCTTATCCCCATA
*** *
8862217 CTTGGTGTGTAGGGCCGGGTGGGTCGATCTTATCCCCATA
1 CTTGGTGTGTAGGGTTAGATGGGTCGATCTTATCCCCATA
*
8862257 --TGGTGTGTTGGGTT
1 CTTGGTGTGTAGGGTT
8862271 GGACGAAGAT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
38 11 0.25
40 33 0.75
ACGTcount: A:0.14, C:0.15, G:0.34, T:0.37
Consensus pattern (40 bp):
CTTGGTGTGTAGGGTTAGATGGGTCGATCTTATCCCCATA
Found at i:8864644 original size:93 final size:93
Alignment explanation
Indices: 8864529--8864794 Score: 469
Period size: 93 Copynumber: 2.9 Consensus size: 93
8864519 CGCCCATAAG
* * * *
8864529 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8864594 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
8864622 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8864687 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
8864715 CGAACTCGGACTCAACTTAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
8864780 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
8864795 CAAATATCCT
Statistics
Matches: 166, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:8864645 original size:47 final size:47
Alignment explanation
Indices: 8864576--8864744 Score: 211
Period size: 47 Copynumber: 3.6 Consensus size: 47
8864566 ATCCACAAGT
8864576 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
8864623 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
8864669 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
8864716 GAACTCGGACTCAACTTAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
8864745 CATTCACATC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 32 0.32
47 59 0.58
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:8864790 original size:46 final size:46
Alignment explanation
Indices: 8864522--8864790 Score: 252
Period size: 46 Copynumber: 5.8 Consensus size: 46
8864512 TGTAACCCGC
* * *
8864522 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
8864568 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
8864618 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
8864661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
8864711 CTC-T---CGAACTCGGACTCAACTTAACGAGTTCGGACATTCACAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
8864754 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
8864791 TGCCCAAATA
Statistics
Matches: 184, Mismatches: 17, Indels: 44
0.75 0.07 0.18
Matches are distributed among these distances:
42 6 0.03
43 13 0.07
44 2 0.01
46 90 0.49
47 55 0.30
49 2 0.01
50 10 0.05
51 6 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:8866271 original size:5 final size:5
Alignment explanation
Indices: 8866263--8866342 Score: 151
Period size: 5 Copynumber: 15.8 Consensus size: 5
8866253 CTTTACGTTT
8866263 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
8866313 TAATA TAATA TAATA TAATA TAATAA TAAT
1 TAATA TAATA TAATA TAATA TAAT-A TAAT
8866343 TCTTAAATAA
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 69 0.93
6 5 0.07
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:8868134 original size:20 final size:20
Alignment explanation
Indices: 8868109--8868146 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8868099 TAGGCGTTAG
*
8868109 ATTAAATTAATAAATTTATT
1 ATTAAATGAATAAATTTATT
*
8868129 ATTAAATGAATTAATTTA
1 ATTAAATGAATAAATTTA
8868147 ATTTTCATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTAAATGAATAAATTTATT
Found at i:8870464 original size:46 final size:44
Alignment explanation
Indices: 8870360--8870467 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8870350 TGTCTTTGAC
** * * *
8870360 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8870404 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8870450 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8870468 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8876607 original size:46 final size:44
Alignment explanation
Indices: 8876503--8876610 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8876493 TGTCTTTGAC
** * * *
8876503 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8876547 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8876593 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8876611 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8878903 original size:34 final size:34
Alignment explanation
Indices: 8878860--8878930 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
8878850 TGGTATTTAT
*
8878860 GTACATATACTTCCTAAAATTTTACAAGTGTATG
1 GTACATATACTTCCTAAAAATTTACAAGTGTATG
*
8878894 GTACATATACTTCTTAAAAATTTACAAGTGTATG
1 GTACATATACTTCCTAAAAATTTACAAGTGTATG
8878928 GTA
1 GTA
8878931 TAGGCAATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (34 bp):
GTACATATACTTCCTAAAAATTTACAAGTGTATG
Found at i:8879017 original size:18 final size:18
Alignment explanation
Indices: 8878984--8879030 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
8878974 AATTATATAC
8878984 ATTACTTATTATTTAAGA-
1 ATTA-TTATTATTTAAGAT
*
8879002 ATTATTATTATGTTAATAT
1 ATTATTATTAT-TTAAGAT
8879021 ATTA-TATTAT
1 ATTATTATTAT
8879031 ATTATATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (18 bp):
ATTATTATTATTTAAGAT
Found at i:8879028 original size:5 final size:5
Alignment explanation
Indices: 8879018--8879079 Score: 115
Period size: 5 Copynumber: 12.4 Consensus size: 5
8879008 ATTATGTTAA
*
8879018 TATAT TATAT TATAT TATAT TATAT TATAT TATAT GATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
8879068 TATAT TATAT TA
1 TATAT TATAT TA
8879080 AAACATAAAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:8881571 original size:19 final size:20
Alignment explanation
Indices: 8881547--8881584 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8881537 TTTTCTCTTC
*
8881547 TTTTCTT-TTTGTTTCCCTT
1 TTTTCTTCTTTCTTTCCCTT
8881566 TTTTCTTCTTTCTTTCCCT
1 TTTTCTTCTTTCTTTCCCT
8881585 ACTATTCGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTCTTCTTTCTTTCCCTT
Found at i:8883161 original size:22 final size:22
Alignment explanation
Indices: 8883129--8883196 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
8883119 TACACAAACG
*
8883129 AACAGATAGCACTAAAGTGCTA
1 AACAGAAAGCACTAAAGTGCTA
* * *
8883151 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAAAGCACTA-AAGTGCTA
*
8883173 AACAGAAAGCACTTAACGTGCTA
1 AACAGAAAGCAC-TAAAGTGCTA
8883196 A
1 A
8883197 TAATAGAACG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 27 0.73
23 8 0.22
24 1 0.03
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.18
Consensus pattern (22 bp):
AACAGAAAGCACTAAAGTGCTA
Found at i:8884350 original size:5 final size:5
Alignment explanation
Indices: 8884340--8884364 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8884330 TATTCTGTCT
8884340 CTTTA CTTTA CTTTA CTTTA CTTTA
1 CTTTA CTTTA CTTTA CTTTA CTTTA
8884365 TGTTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
CTTTA
Found at i:8884379 original size:7 final size:7
Alignment explanation
Indices: 8884369--8884426 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
8884359 ACTTTATGTT
8884369 TTATATA
1 TTATATA
8884376 TTATATA
1 TTATATA
*
8884383 TAATATA
1 TTATATA
*
8884390 ATA-ATA
1 TTATATA
8884396 -TATTATA
1 TTA-TATA
8884403 TTATATA
1 TTATATA
8884410 TTA-ATA
1 TTATATA
*
8884416 CTTAAATA
1 -TTATATA
8884424 TTA
1 TTA
8884427 AGTTAATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
5 2 0.05
6 6 0.14
7 30 0.70
8 5 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (7 bp):
TTATATA
Found at i:8885727 original size:131 final size:132
Alignment explanation
Indices: 8885559--8885915 Score: 353
Period size: 132 Copynumber: 2.7 Consensus size: 132
8885549 ATTCGATTGC
* * ** * *
8885559 TTTGAACAAACAAGAAATCACAACCCAGCACGATAGGGCATGATTCC-CGAATTGT-CAAACACC
1 TTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATT-TCCAAACACC
* * * * * * *
8885622 GAGTATTGCCTTTGTCTTAAAGGATTTTTAGAAGACAT-GAGTAAAATTTTGAAGGGATATTTGA
65 AAGCATCGCCTTCGTCTTAAAGAATTTTTAGAAGACATGGA-TAAAATTTTGAAGAGACATTTGA
8885686 ACAT
129 ACAT
* * * *
8885690 TTTGAGCAAACGAGGAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTTCCAAATATCA
1 TTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTTCCAAACACCA
* * * * **
8885755 AGCCTCGCCTTCGTTTTCAAGAATTTTTAGAAGACATGGATGAAATTTTGAAGAGACATTTGATT
66 AGCATCGCCTTCGTCTTAAAGAATTTTTAGAAGACATGGATAAAATTTTGAAGAGACATTTGAAC
8885820 AT
131 AT
* * * * * * * *
8885822 TTTGAGCAAACGCGAAATTGAAATCCAGCACGTTAGGGCACGATTCCGCGAGTTGCCAAATATCA
1 TTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTTCCAAACA-CC
* * *
8885887 AATC-TCGCCTTCGTTTTCAAGAATTTTTA
65 AAGCATCGCCTTCGTCTTAAAGAATTTTTA
8885916 AGTAATTGTG
Statistics
Matches: 188, Mismatches: 34, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
131 40 0.21
132 143 0.76
133 5 0.03
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
TTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTTCCAAACACCA
AGCATCGCCTTCGTCTTAAAGAATTTTTAGAAGACATGGATAAAATTTTGAAGAGACATTTGAAC
AT
Found at i:8885804 original size:132 final size:132
Alignment explanation
Indices: 8885645--8885915 Score: 391
Period size: 132 Copynumber: 2.1 Consensus size: 132
8885635 GTCTTAAAGG
* * *
8885645 ATTTTTAGAAGACATGAGTAAAATTTTGAAGGGATATTTGAACATTTTGAGCAAACGAGGAATTG
1 ATTTTTAGAAGACATGAGTAAAATTTTGAAGAGACATTTGAACATTTTGAGCAAACGAGAAATTG
* * *
8885710 CAACCCAACACGTTAGGGCACGATTCCACGAATTTCCAAATATCAAGCCTCGCCTTCGTTTTCAA
66 AAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAACCTCGCCTTCGTTTTCAA
8885775 GA
131 GA
* ** *
8885777 ATTTTTAGAAGACATG-GATGAAATTTTGAAGAGACATTTGATTATTTTGAGCAAACGCGAAATT
1 ATTTTTAGAAGACATGAG-TAAAATTTTGAAGAGACATTTGAACATTTTGAGCAAACGAGAAATT
* * * * *
8885841 GAAATCCAGCACGTTAGGGCACGATTCCGCGAGTTGCCAAATATCAAATCTCGCCTTCGTTTTCA
65 GAAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAACCTCGCCTTCGTTTTCA
8885906 AGA
130 AGA
8885909 ATTTTTA
1 ATTTTTA
8885916 AGTAATTGTG
Statistics
Matches: 123, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
131 1 0.01
132 122 0.99
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (132 bp):
ATTTTTAGAAGACATGAGTAAAATTTTGAAGAGACATTTGAACATTTTGAGCAAACGAGAAATTG
AAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCAAACCTCGCCTTCGTTTTCAA
GA
Found at i:8886568 original size:2 final size:2
Alignment explanation
Indices: 8886563--8886595 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8886553 ACACACACAC
8886563 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8886596 AAACAGGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8887303 original size:15 final size:16
Alignment explanation
Indices: 8887274--8887304 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8887264 AGTTTTTTTT
8887274 AAATAAAATAAATAAA
1 AAATAAAATAAATAAA
8887290 AAATAAAA-AAATAAA
1 AAATAAAATAAATAAA
8887305 GAGGGTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
AAATAAAATAAATAAA
Found at i:8904684 original size:23 final size:23
Alignment explanation
Indices: 8904658--8904716 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
8904648 CGTGAATTAA
8904658 TTTTTTATATTAAAT-TTTTTTT
1 TTTTTTATATTAAATATTTTTTT
* *
8904680 GTTTTTTAAATAAAATATTTTTTT
1 -TTTTTTATATTAAATATTTTTTT
*
8904704 TATTTT-TATTAAA
1 TTTTTTATATTAAA
8904717 AATATTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 5 0.17
23 18 0.60
24 7 0.23
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTTTATATTAAATATTTTTTT
Found at i:8904717 original size:23 final size:23
Alignment explanation
Indices: 8904658--8904723 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
8904648 CGTGAATTAA
*
8904658 TTTTTTATATTAAAT-TTTTTTTG
1 TTTTTTAT-TAAAATATTTTTTTG
*
8904681 TTTTTTAAATAAAATATTTTTTT-
1 TTTTTT-ATTAAAATATTTTTTTG
8904704 TATTTTTATTAAAAATATTT
1 T-TTTTTATT-AAAATATTT
8904724 AAATATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
23 14 0.39
24 22 0.61
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTTATTAAAATATTTTTTTG
Found at i:8905145 original size:60 final size:60
Alignment explanation
Indices: 8905028--8905146 Score: 170
Period size: 60 Copynumber: 2.0 Consensus size: 60
8905018 AATTTTTTTA
* ** *
8905028 TAATTATTTTAAAATTAATTTGTTAGTAATTAAGGATTATGTTAAAATTTTTCGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTAAGGATTAAATTAAAATTGTTCGTGTTTG
8905088 TAATTATTTTAAAATTAATTTATTAGTAATGT-AGGATTAAATTATAAATTGTT-GTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAAT-TAAGGATTAAATTA-AAATTGTTCGTGTTT
8905147 AGTTTAGTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
60 45 0.85
61 8 0.15
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.51
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTAAGGATTAAATTAAAATTGTTCGTGTTTG
Found at i:8906450 original size:20 final size:20
Alignment explanation
Indices: 8906422--8906459 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8906412 ACGATATTGA
*
8906422 AATAGTTTAGGTAATTATCT
1 AATAGTTTAGATAATTATCT
*
8906442 AATATTTTAGATAATTAT
1 AATAGTTTAGATAATTAT
8906460 ACAAAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (20 bp):
AATAGTTTAGATAATTATCT
Found at i:8907822 original size:18 final size:18
Alignment explanation
Indices: 8907760--8907822 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
8907750 TAATAATTAT
8907760 AAAAA-TATTCAAAAATAA
1 AAAAATTATT-AAAAATAA
* * *
8907778 AATAAAATCTTTAAAATAA
1 AA-AAATTATTAAAAATAA
* *
8907797 TAAGATTATTAAAAATAA
1 AAAAATTATTAAAAATAA
8907815 AAAAATTA
1 AAAAATTA
8907823 CACATGAATT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
18 20 0.59
19 11 0.32
20 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAATTATTAAAAATAA
Found at i:8913754 original size:22 final size:23
Alignment explanation
Indices: 8913724--8913773 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
8913714 AGATTAATAT
8913724 TATTATATTTATAATAAAT-TTTA
1 TATTATATTTATAA-AAATATTTA
*
8913747 TATT-TATTTTTAAAAATATTTA
1 TATTATATTTATAAAAATATTTA
*
8913769 AATTA
1 TATTA
8913774 CTATATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 4 0.17
22 15 0.65
23 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATTATATTTATAAAAATATTTA
Found at i:8913856 original size:22 final size:22
Alignment explanation
Indices: 8913831--8913874 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8913821 TAATTTTATA
8913831 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
8913853 ATAATTTATTATTCTAATAAAT
1 ATAAATTATTAATATAATAAAT
8913875 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:8913912 original size:13 final size:14
Alignment explanation
Indices: 8913894--8913935 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
8913884 TTTCAGGTTT
8913894 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
8913907 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
8913922 ATTTTAAATAATAT
1 ATTTT-AATAATAT
8913936 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:8913920 original size:16 final size:16
Alignment explanation
Indices: 8913898--8913934 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8913888 AGGTTTATTT
8913898 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
8913915 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
8913930 TAATA
1 TAATA
8913935 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:8913987 original size:15 final size:15
Alignment explanation
Indices: 8913953--8914023 Score: 65
Period size: 15 Copynumber: 4.6 Consensus size: 15
8913943 ATATTATTGA
8913953 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
8913966 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
8913981 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
8914000 AAATATATTAATAAT
1 AAATATTTTAATAAT
8914015 AAATATTTT
1 AAATATTTT
8914024 GTAGTATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 19 0.41
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:8915022 original size:10 final size:10
Alignment explanation
Indices: 8915007--8915036 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
8914997 ATATCTAGAA
8915007 TTCTCTTCAT
1 TTCTCTTCAT
8915017 TTCTCTTCAT
1 TTCTCTTCAT
8915027 TTCTCTTCAT
1 TTCTCTTCAT
8915037 ATTCATCAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (10 bp):
TTCTCTTCAT
Found at i:8916327 original size:50 final size:51
Alignment explanation
Indices: 8916250--8916378 Score: 201
Period size: 50 Copynumber: 2.5 Consensus size: 51
8916240 GACCATGGCA
8916250 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAA-TG
8916301 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
* *
8916351 ACAAGTGAAAAGT-AGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGA-TAGCTTCGGCTAC
8916379 CTAATCAGTG
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
50 47 0.64
51 26 0.36
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
Found at i:8916392 original size:31 final size:31
Alignment explanation
Indices: 8916354--8916533 Score: 256
Period size: 31 Copynumber: 5.8 Consensus size: 31
8916344 ACAAATGACA
* * *
8916354 AGTGAAAAGTAGTAGCTTCAGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
8916385 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8916416 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
8916447 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8916478 AGTGAAAAATGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
8916509 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
8916534 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
30 3 0.02
31 128 0.96
32 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8916681 original size:46 final size:46
Alignment explanation
Indices: 8916556--8916681 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
8916546 ACAAGTGATT
** * *
8916556 TTCGTATAAGACCATATCTGGGATATGGCATTGGTGTGATATATGC
1 TTCGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGA
* * *
8916602 TACTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGA
1 TTC-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGA
* * *
8916649 TTCGTGTAAGACCATAGCTGGGCTATGGCATCA
1 TTCGTATAAGACCATATCTGGGATATGGCATCA
8916682 TTATGTGAAG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 28 0.42
47 39 0.58
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (46 bp):
TTCGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGA
Found at i:8923651 original size:3 final size:3
Alignment explanation
Indices: 8923639--8923682 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
8923629 AAATTTATAG
*
8923639 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8923683 CTTATCTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:8927839 original size:22 final size:23
Alignment explanation
Indices: 8927814--8927866 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
8927804 TTTAAGAGAG
* *
8927814 TTAAAATATAATTTTAT-TATTA
1 TTAAAATAAAATTTTATAAATTA
**
8927836 TTAATTTAAAATTTTATAAATTA
1 TTAAAATAAAATTTTATAAATTA
8927859 -TAAAATAA
1 TTAAAATAA
8927867 TTTAAATAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAAAATAAAATTTTATAAATTA
Found at i:8930779 original size:20 final size:22
Alignment explanation
Indices: 8930749--8930803 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 22
8930739 TGAATTTAAA
* *
8930749 ATATTATAATTTTA-TTATTTT
1 ATATTAAAATTTTATTTAATTT
*
8930770 A-ATTAAAATTATATTTAATTT
1 ATATTAAAATTTTATTTAATTT
*
8930791 ATGTTAAAATTTT
1 ATATTAAAATTTT
8930804 TTAAAAATTG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 10 0.37
21 8 0.30
22 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATATTAAAATTTTATTTAATTT
Found at i:8931395 original size:44 final size:44
Alignment explanation
Indices: 8931332--8931419 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
8931322 CATAAAGTTC
8931332 ATCCGGCTTCACGTCTCCAAAAAGTAGTGATAAGCCTTTACTTG
1 ATCCGGCTTCACGTCTCCAAAAAGTAGTGATAAGCCTTTACTTG
*
8931376 ATCCGGGTTCACGTCTCCAAAAAGTAGTGATAAGCCTTTACTTG
1 ATCCGGCTTCACGTCTCCAAAAAGTAGTGATAAGCCTTTACTTG
8931420 GGTCACTGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCCGGCTTCACGTCTCCAAAAAGTAGTGATAAGCCTTTACTTG
Found at i:8934066 original size:2 final size:2
Alignment explanation
Indices: 8934061--8934086 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8934051 TTTTTTATTT
8934061 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8934087 GATCCTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8944811 original size:67 final size:67
Alignment explanation
Indices: 8944730--8944863 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
8944720 GACTTAATTG
*
8944730 ATATAATACTAATATTTTAAAATTTTGAGTTATACTTTGAAGATGGGGAATACAATTCACTCACA
1 ATATAATACCAATATTTTAAAATTTTGAGTTATACTTTGAAGATGGGGAATACAATTCACTCACA
8944795 TA
66 TA
8944797 ATATAATACCAATATTTTAAAATTTTGAGTTATACTTTGAAGATGGGGAATACAATTCACTCACA
1 ATATAATACCAATATTTTAAAATTTTGAGTTATACTTTGAAGATGGGGAATACAATTCACTCACA
8944862 TA
66 TA
8944864 TACTTGATTA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (67 bp):
ATATAATACCAATATTTTAAAATTTTGAGTTATACTTTGAAGATGGGGAATACAATTCACTCACA
TA
Found at i:8951096 original size:3 final size:3
Alignment explanation
Indices: 8951090--8951141 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8951080 TTACTACTGC
8951090 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8951138 TAA T
1 TAA T
8951142 GATGATGATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8951681 original size:20 final size:19
Alignment explanation
Indices: 8951634--8951682 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
8951624 AAAAACAGAA
*
8951634 GAGGAGGGAGAGAAAAGAGG
1 GAGG-GGGAAAGAAAAGAGG
*
8951654 GAGCGGGGAAAGAAGAGAGGG
1 GAG-GGGGAAAGAAAAGA-GG
8951675 GAGGGGGA
1 GAGGGGGA
8951683 GCTCCGGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.39, C:0.02, G:0.59, T:0.00
Consensus pattern (19 bp):
GAGGGGGAAAGAAAAGAGG
Found at i:8953041 original size:14 final size:14
Alignment explanation
Indices: 8953022--8953056 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8953012 GCTAATTTTT
* *
8953022 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
8953036 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
8953050 TTGAAAA
1 TTGAAAA
8953057 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:8953378 original size:146 final size:144
Alignment explanation
Indices: 8953132--8953609 Score: 590
Period size: 146 Copynumber: 3.3 Consensus size: 144
8953122 ATTAAAAGGT
* * * * *
8953132 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACA-AACAGAAATTGAAATTACCTCATCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAACAG-AATTAAAATTACCTCAACGTG
* *
8953196 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-GAGCATAAATTGAAATTACCTC
65 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAGCAGAAATTGAAATTACCTC
* *
8953260 AACGTGTCTTGAGGC
130 AGCGTGTCCTGAGGC
* *
8953275 TCAACTCACCTCTCGCAATATGAGCTGATTTTTAAAACAACAGGAATTAAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAACA-GAATTAAAATTACCTCAACGTG
* * * * *
8953340 TGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGTCAA-CAGAAATTGAAAT
65 T--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTG-AAAGCAGAAATTGAAAT
8953404 TACCTCAGCGTGTCCTGAGGC
124 TACCTCAGCGTGTCCTGAGGC
* *
8953425 TCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAA-A-AATTGAAAA-TACCTCAA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AAA-ACAACAGAATT-AAAATTACCTCAA
** *
8953487 CGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTGAAAGCAGAAATTGAAATTA
61 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAGCAGAAATTGAAATTA
*
8953552 CCTCAGCGTGTCCCGAGGC
126 CCTCAGCGTGTCCTGAGGC
*
8953571 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACA
8953610 GAAATAAAAA
Statistics
Matches: 290, Mismatches: 30, Indels: 31
0.83 0.09 0.09
Matches are distributed among these distances:
142 3 0.01
143 35 0.12
144 29 0.10
145 3 0.01
146 96 0.33
149 34 0.12
150 56 0.19
151 17 0.06
152 9 0.03
153 4 0.01
154 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (144 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAACAGAATTAAAATTACCTCAACGTGT
CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAGCAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGC
Found at i:8953425 original size:220 final size:219
Alignment explanation
Indices: 8953132--8953603 Score: 650
Period size: 220 Copynumber: 2.2 Consensus size: 219
8953122 ATTAAAAGGT
* *
8953132 TCAACTCACCTCTCGCAATATGAGTTGA--TTCTTGACAAACAGAAATTGAAATTACCTCATCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
* * * *
8953195 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-GAG-CATAAATTGAAATTAC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAAAAATTGAAAATAC
*
8953257 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTAAAACAACAGGAAT
131 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTT-AAA-AACAGAAAT
*
8953322 TAAAATTACCTCAGCGTGTGACCTGAGGC
193 TAAAATTACCTCAGCGTGT--CCCGAGGC
* * * *
8953351 TCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGTC-AACAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
* *
8953415 GTCCTGAGGCTCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAAT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAGACAAAAATTGAAAAT
** * * * *
8953480 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTGAAAGCAGAAATT
129 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAAAAACAGAAATT
*
8953545 GAAATTACCTCAGCGTGTCCCGAGGC
194 AAAATTACCTCAGCGTGTCCCGAGGC
8953571 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
8953604 GAAACAGAAA
Statistics
Matches: 222, Mismatches: 24, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
219 25 0.11
220 97 0.44
221 6 0.03
222 25 0.11
223 7 0.03
224 6 0.03
225 56 0.25
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (219 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAAAAATTGAAAATAC
CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAAAAACAGAAATTAA
AATTACCTCAGCGTGTCCCGAGGC
Found at i:8953571 original size:71 final size:72
Alignment explanation
Indices: 8953132--8953614 Score: 589
Period size: 71 Copynumber: 6.6 Consensus size: 72
8953122 ATTAAAAGGT
* * *
8953132 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAGCAGAAATTGAAATTACCTCAGCGTGT
*
8953197 CTTGAGGC
65 CCTGAGGC
* * *
8953205 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-GAGCATAAATTGAAATTACCTCAACGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGCAGAAATTGAAATTACCTCAGCGTGTC
*
8953268 TTGAGGC
66 CTGAGGC
* * * * *
8953275 TCAACTCACCTCTCGCAATATGAGCTGATTTTTAAAACAACAGGAATTAAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT-GAA-AGCAGAAATTGAAATTACCTCAGCGTG
8953340 TGACCTGAGGC
64 T--CCTGAGGC
* * * *
8953351 TCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGTCAA-CAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAGCAGAAATTGAAATTACCTCAGCGT
8953415 GTCCTGAGGC
63 GTCCTGAGGC
* * * * *
8953425 TCAACTCACTTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGT
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAG-CAGAAATTGAAATTACCTCAGCGT
*
8953490 GTCTTGAGGC
63 GTCCTGAGGC
** *
8953500 TCAACTCATTTCTTGCAATATGAGTTGA-TTTTGAAAGCAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGCAGAAATTGAAATTACCTCAGCGTGTC
*
8953564 CCGAGGC
66 CTGAGGC
8953571 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-CAGAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGCAGAAAT
8953615 AAAAACATCA
Statistics
Matches: 355, Mismatches: 43, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
70 60 0.17
71 65 0.18
72 21 0.06
73 30 0.08
74 62 0.17
75 55 0.15
76 55 0.15
77 1 0.00
78 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGCAGAAATTGAAATTACCTCAGCGTGTC
CTGAGGC
Found at i:8966357 original size:3 final size:3
Alignment explanation
Indices: 8966351--8966405 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
8966341 TTACTACTGC
8966351 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8966399 TAA TAA T
1 TAA TAA T
8966406 GATGATGATG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8968508 original size:2 final size:2
Alignment explanation
Indices: 8968501--8968525 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8968491 GATAATAACA
8968501 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8968526 AACAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8968779 original size:18 final size:19
Alignment explanation
Indices: 8968738--8968775 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
8968728 AATAGGACTT
*
8968738 AATATACTAATAAAATAGA
1 AATATACTAATAAAATAAA
8968757 AATATA-TAA-AAAATAAA
1 AATATACTAATAAAATAAA
8968774 AA
1 AA
8968776 ATATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (19 bp):
AATATACTAATAAAATAAA
Found at i:8968963 original size:20 final size:19
Alignment explanation
Indices: 8968937--8968977 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8968927 TATTTTATTG
8968937 AATTAT-TTAAAGTT-TTAA
1 AATTATATTAAA-TTATTAA
8968955 AATTATATTAAATTATTAA
1 AATTATATTAAATTATTAA
8968974 AATT
1 AATT
8968978 TTAATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTATATTAAATTATTAA
Found at i:8968963 original size:28 final size:27
Alignment explanation
Indices: 8968915--8968981 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
8968905 TTAAATAACG
* * *
8968915 TAAAATATTTAATATTTTATTGAATTATT
1 TAAAAT-TTTAAAATTATATTAAATTA-T
*
8968944 TAAAGTTTTAAAATTATATTAAATTAT
1 TAAAATTTTAAAATTATATTAAATTAT
8968971 TAAAATTTTAA
1 TAAAATTTTAA
8968982 TATATTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 11 0.33
28 17 0.52
29 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
TAAAATTTTAAAATTATATTAAATTAT
Found at i:8968988 original size:19 final size:19
Alignment explanation
Indices: 8968951--8968994 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8968941 ATTTAAAGTT
*
8968951 TTAAAATTATATTAAATTA
1 TTAAAATTATAATAAATTA
* *
8968970 TTAAAATTTTAATATATTA
1 TTAAAATTATAATAAATTA
*
8968989 ATAAAA
1 TTAAAA
8968995 ACATCCTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAAAATTATAATAAATTA
Found at i:8969424 original size:26 final size:23
Alignment explanation
Indices: 8969394--8969453 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 23
8969384 TTATTAAAAG
* *
8969394 TTATTTATAAAATAGATGTATTTAT
1 TTATTTATAAAATAAAT-TAATT-T
*
8969419 TCTATTTATACAATAAATTAATTT
1 T-TATTTATAAAATAAATTAATTT
8969443 TTATTTATAAA
1 TTATTTATAAA
8969454 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 9 0.30
24 2 0.07
25 5 0.17
26 14 0.47
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (23 bp):
TTATTTATAAAATAAATTAATTT
Found at i:8970094 original size:34 final size:35
Alignment explanation
Indices: 8970056--8970128 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
8970046 ATAATTGACT
* *
8970056 ATTTAATTTT-A-TATGTTTAGATTTTTGTAAATTA
1 ATTTAATTTTAATTAT-TTTAGAATTTTATAAATTA
* *
8970090 ATTTATTTTTAATTATTTTTGAATTTTATAAATTA
1 ATTTAATTTTAATTATTTTAGAATTTTATAAATTA
8970125 ATTT
1 ATTT
8970129 TTATGTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 9 0.27
35 21 0.64
36 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (35 bp):
ATTTAATTTTAATTATTTTAGAATTTTATAAATTA
Found at i:8970316 original size:22 final size:23
Alignment explanation
Indices: 8970291--8970334 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8970281 AATATAAATT
*
8970291 TATTTTTTAA-AAATTAAAAAAA
1 TATTATTTAATAAATTAAAAAAA
*
8970313 TATTATTTAATAAATTTAAAAA
1 TATTATTTAATAAATTAAAAAA
8970335 TAAAAGTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
TATTATTTAATAAATTAAAAAAA
Found at i:8970689 original size:2 final size:2
Alignment explanation
Indices: 8970682--8970709 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8970672 AACCAGAACA
8970682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8970710 TTTAATCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8976781 original size:17 final size:17
Alignment explanation
Indices: 8976761--8976794 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8976751 AAATAGATTT
8976761 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
8976778 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
8976795 ACCTAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:8993210 original size:133 final size:131
Alignment explanation
Indices: 8992990--8993249 Score: 351
Period size: 133 Copynumber: 2.0 Consensus size: 131
8992980 TTATTCATTT
*
8992990 AAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGC
1 AAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCATGC
* * * * **
8993055 CGGGTTGCAATTTCTCGCTTGTTCAAAATAATCGGATATTCTTTTGGTTTTTCACTCATGTCTTT
66 CGGGTTGCAATTTCTCGCTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTT
8993120 A
131 A
* ** *
8993121 AAAAATTTCTTTAAAACGAAGGTAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTATCAT
1 AAAAA-TTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCAT
* ** *
8993186 GCTGGGTTGTGATTTC-CTGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTC
64 GCCGGGTTGCAATTTCTC-GCTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTC
8993250 CTCTAAATTC
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 5 0.05
132 37 0.33
133 69 0.62
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (131 bp):
AAAAATTCTTTAAAACGAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCATGC
CGGGTTGCAATTTCTCGCTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTT
A
Found at i:8994854 original size:17 final size:16
Alignment explanation
Indices: 8994812--8994867 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
8994802 CTTTCCTTGA
8994812 ATTATTTTATTTATGTT
1 ATTATTTTATTTAT-TT
* *
8994829 CTTA-ATTATATTATTT
1 ATTATTTTAT-TTATTT
8994845 ATTATTTTATTTTATTT
1 ATTATTTTA-TTTATTT
8994862 ATTATT
1 ATTATT
8994868 GAATTTGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 9 0.28
17 22 0.69
18 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (16 bp):
ATTATTTTATTTATTT
Found at i:8994873 original size:17 final size:17
Alignment explanation
Indices: 8994839--8994873 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8994829 CTTAATTATA
**
8994839 TTATTTATTATTTTATT
1 TTATTTATTATTGAATT
8994856 TTATTTATTATTGAATT
1 TTATTTATTATTGAATT
8994873 T
1 T
8994874 GGAAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTATTTATTATTGAATT
Found at i:8998578 original size:52 final size:53
Alignment explanation
Indices: 8998428--8998581 Score: 158
Period size: 52 Copynumber: 2.9 Consensus size: 53
8998418 CACATATAAT
* * *
8998428 ACCG-ATGCCATATCCCAAATATGGTCTTATAC-GGAATCACATTATCACATCAC
1 ACCGAATGCCATAGCCCAACTATGGTCTTATACGGGGA--ACATTATCACATCAC
* * * **
8998481 ACCGACT-CCATAGCCCAGCTATGGTCTTATGC-GGGAACATGTATCACATTGC
1 ACCGAATGCCATAGCCCAACTATGGTCTTATACGGGGAACAT-TATCACATCAC
8998533 ACC-AATGCCATAGCCCAACTATGGTCTTATACGGGCGAACA-TATCACAT
1 ACCGAATGCCATAGCCCAACTATGGTCTTATACGGG-GAACATTATCACAT
8998582 ATTTTCTGTC
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
51 6 0.07
52 43 0.51
53 30 0.35
54 6 0.07
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (53 bp):
ACCGAATGCCATAGCCCAACTATGGTCTTATACGGGGAACATTATCACATCAC
Found at i:8999937 original size:3 final size:3
Alignment explanation
Indices: 8999929--8999983 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
8999919 GCCGTTACAC
8999929 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8999977 TAT TAT T
1 TAT TAT T
8999984 TATGCATTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9004579 original size:19 final size:18
Alignment explanation
Indices: 9004555--9004598 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
9004545 CCACAGTCAA
9004555 TTAAAAAATAA-AAAAGATT
1 TTAAAAAA-AATAAAAG-TT
*
9004574 TTAAAAAAAATAAATGTT
1 TTAAAAAAAATAAAAGTT
9004592 TTAAAAA
1 TTAAAAA
9004599 GAAAGACACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TTAAAAAAAATAAAAGTT
Found at i:9011032 original size:22 final size:24
Alignment explanation
Indices: 9011001--9011044 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
9010991 TACAAATTAA
*
9011001 AAAAAGAGAAAA-AAAATAAAAAT
1 AAAAAGAGAAAAGAAAAGAAAAAT
9011024 AAAAA-AGAAAAGAAAAGAAAA
1 AAAAAGAGAAAAGAAAAGAAAA
9011045 GAAGAGTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (24 bp):
AAAAAGAGAAAAGAAAAGAAAAAT
Found at i:9011043 original size:32 final size:32
Alignment explanation
Indices: 9010981--9011044 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
9010971 ATATATTCAT
* * **
9010981 AAAATAAATATACAAATTAAAAAAAGAGAAAA
1 AAAATAAAAATAAAAAAGAAAAAAAGAGAAAA
9011013 AAAATAAAAATAAAAAAGAAAAGAAA-AGAAAA
1 AAAATAAAAATAAAAAAGAAAA-AAAGAGAAAA
9011045 GAAGAGTGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 24 0.89
33 3 0.11
ACGTcount: A:0.80, C:0.02, G:0.08, T:0.11
Consensus pattern (32 bp):
AAAATAAAAATAAAAAAGAAAAAAAGAGAAAA
Found at i:9011473 original size:5 final size:5
Alignment explanation
Indices: 9011463--9011487 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9011453 TAAATCTGAT
9011463 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
9011488 ATCGAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:9016541 original size:20 final size:19
Alignment explanation
Indices: 9016518--9016555 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
9016508 TCTTCTCTTC
9016518 TTTCTTTCTTTCTTTTAAAG
1 TTTCTTT-TTTCTTTTAAAG
*
9016538 TTTCTTTTTTTTTTTAAA
1 TTTCTTTTTTCTTTTAAA
9016556 TAGTTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTCTTTTTTCTTTTAAAG
Found at i:9020613 original size:17 final size:19
Alignment explanation
Indices: 9020578--9020617 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
9020568 TGCGCACCAT
*
9020578 TTTTTTTTTTCCTGTTTCA
1 TTTTTATTTTCCTGTTTCA
9020597 TTTTTATTTT-CTG-TTCA
1 TTTTTATTTTCCTGTTTCA
9020614 TTTT
1 TTTT
9020618 ACAGTTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 3 0.15
19 9 0.45
ACGTcount: A:0.07, C:0.12, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTTATTTTCCTGTTTCA
Found at i:9024194 original size:29 final size:28
Alignment explanation
Indices: 9024131--9024194 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
9024121 AATATACATA
* * * *
9024131 AATTAGTGTAATTTTATATATGAATTTT
1 AATTTGTGTAAATTTATACATAAATTTT
9024159 AATTTTGTGTAAATTTATACATAAAATTTT
1 AA-TTTGTGTAAATTTATACAT-AAATTTT
9024189 AATTTG
1 AATTTG
9024195 ATTTAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.07
29 20 0.67
30 8 0.27
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (28 bp):
AATTTGTGTAAATTTATACATAAATTTT
Found at i:9024226 original size:12 final size:12
Alignment explanation
Indices: 9024209--9024234 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9024199 AATTTTTATG
9024209 AATTATTAATAT
1 AATTATTAATAT
9024221 AATTATTAATAT
1 AATTATTAATAT
9024233 AA
1 AA
9024235 CATCATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AATTATTAATAT
Found at i:9024613 original size:34 final size:35
Alignment explanation
Indices: 9024570--9024640 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 35
9024560 AAGTTTTGAG
9024570 CAGGGATTTTACT-AAAAAAAAATCTAGAAATCTA
1 CAGGGATTTTACTAAAAAAAAAATCTAGAAATCTA
9024604 CAGGGATTTTACTAAAAAAAAAAAATCTAGAAATCTA
1 CAGGGATTTTACT--AAAAAAAAAATCTAGAAATCTA
9024641 ACTTAATGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 13 0.38
37 21 0.62
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (35 bp):
CAGGGATTTTACTAAAAAAAAAATCTAGAAATCTA
Found at i:9029870 original size:26 final size:26
Alignment explanation
Indices: 9029839--9029920 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
9029829 TGAAATTCCC
*
9029839 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
9029865 ATCATGGAACGTTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9029891 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9029917 ATCA
1 ATCA
9029921 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9033369 original size:35 final size:35
Alignment explanation
Indices: 9033330--9033399 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
9033320 TTTCCATGAG
9033330 TAAGAGCTGAAAGTTTATGATGATTTAGTACGGAA
1 TAAGAGCTGAAAGTTTATGATGATTTAGTACGGAA
9033365 TAAGAGCTGAAAGTTTATGATGATTTAGTACGGAA
1 TAAGAGCTGAAAGTTTATGATGATTTAGTACGGAA
9033400 CTGGGGTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (35 bp):
TAAGAGCTGAAAGTTTATGATGATTTAGTACGGAA
Found at i:9034139 original size:52 final size:51
Alignment explanation
Indices: 9034030--9034188 Score: 171
Period size: 52 Copynumber: 3.0 Consensus size: 51
9034020 ACCATAGCCT
*
9034030 ATGTGATACGTGCGCCCGTATAAGACCATAGCTGGGCTATGGCATCGG--TG
1 ATGTGATATGTGC-CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
* *
9034080 CATTGTGATATGTACTCCCGTATAAAACCAT-GACTGGGCTATGGCATCGGTATG
1 -A-TGTGATATGTGC-CCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTATG
* * * *
9034134 ATGTGATAATGTGCCTCTGTATAAGACCATATCTGGGATATGGCATCAGTATG
1 ATGTGAT-ATGTGCC-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
9034187 AT
1 AT
9034189 ATGTGATCCG
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
51 2 0.02
52 48 0.53
53 39 0.43
54 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
ATGTGATATGTGCCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
Found at i:9036941 original size:13 final size:11
Alignment explanation
Indices: 9036922--9036963 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 11
9036912 GTATATTTAC
9036922 TTATTATCTAAG
1 TTATTAT-TAAG
9036934 TATATTATTAAG
1 T-TATTATTAAG
9036946 TTATTATT-A-
1 TTATTATTAAG
9036955 TTATTATTA
1 TTATTATTA
9036964 TTATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.29
10 1 0.04
11 7 0.25
12 6 0.21
13 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:9036972 original size:2 final size:2
Alignment explanation
Indices: 9036965--9037008 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
9036955 TTATTATTAT
9036965 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9037007 TA
1 TA
9037009 AAGCAAAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9037184 original size:54 final size:54
Alignment explanation
Indices: 9037102--9037209 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
9037092 GGAAAGAAAG
*
9037102 GAAAAAGGGGAAATAGGGATTTTGAAGCTTGGAAGTTTAATAGGTAAGTCAATT
1 GAAAAAGGGGAAATAGGGATTTTGAAGCTTAGAAGTTTAATAGGTAAGTCAATT
9037156 GAAAAAGGGGAAATAGGGATTTTGAAGCTTAGAAGTTTAATAGGTAAGTCAATT
1 GAAAAAGGGGAAATAGGGATTTTGAAGCTTAGAAGTTTAATAGGTAAGTCAATT
9037210 TAGCCCCTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.40, C:0.04, G:0.29, T:0.28
Consensus pattern (54 bp):
GAAAAAGGGGAAATAGGGATTTTGAAGCTTAGAAGTTTAATAGGTAAGTCAATT
Found at i:9037788 original size:3 final size:3
Alignment explanation
Indices: 9037780--9037809 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9037770 GAATGGTAAG
9037780 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9037810 GGTATTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9037875 original size:37 final size:37
Alignment explanation
Indices: 9037812--9037883 Score: 87
Period size: 37 Copynumber: 1.9 Consensus size: 37
9037802 ATTATTATGG
9037812 TATTGAATTGAATAAAAATTCATGAATTATT-AGTGAT
1 TATTGAATTGAATAAAAATTCATGAA-TATTGAGTGAT
*
9037849 TATTGATATTGAAT-AAAATAT-GTGAATATTGAGTG
1 TATTGA-ATTGAATAAAAAT-TCATGAATATTGAGTG
9037884 GAAAATTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 4 0.13
37 19 0.61
38 8 0.26
ACGTcount: A:0.42, C:0.01, G:0.17, T:0.40
Consensus pattern (37 bp):
TATTGAATTGAATAAAAATTCATGAATATTGAGTGAT
Found at i:9040454 original size:5 final size:5
Alignment explanation
Indices: 9040438--9040484 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
9040428 TAGGAAGATA
*
9040438 TTATT TTGTT TTATT TTATT TTATTAT TTATT TT-TAT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTA-T-T TTATT TTAT-T TTATT TTATT
9040485 AATTTAGGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 1 0.03
5 28 0.78
6 3 0.08
7 4 0.11
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:9041387 original size:9 final size:9
Alignment explanation
Indices: 9041310--9041385 Score: 107
Period size: 9 Copynumber: 8.4 Consensus size: 9
9041300 TTTGGTTAAA
9041310 AATTAACCG
1 AATTAACCG
*
9041319 AATTACCCG
1 AATTAACCG
*
9041328 AATTAATCG
1 AATTAACCG
9041337 AATTAACCG
1 AATTAACCG
9041346 AATTAACCG
1 AATTAACCG
*
9041355 AATTGACCG
1 AATTAACCG
*
9041364 GATTAACCG
1 AATTAACCG
*
9041373 AATTGACCG
1 AATTAACCG
9041382 AATT
1 AATT
9041386 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:9041516 original size:37 final size:37
Alignment explanation
Indices: 9041396--9041517 Score: 176
Period size: 37 Copynumber: 3.3 Consensus size: 37
9041386 GAATCACTAC
*
9041396 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
* *
9041433 ACTATATAATTAAAAACATTACATAAGTCTTTGAATC
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
*
9041470 ACTAAATAATTAAAAACATTACATAAGTC-TTGAAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTG-AATT
9041507 AAC-ACATAATT
1 -ACTACATAATT
9041518 GAAATGTAAG
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
36 3 0.04
37 72 0.94
38 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.34
Consensus pattern (37 bp):
ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
Found at i:9043963 original size:18 final size:20
Alignment explanation
Indices: 9043933--9043977 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
9043923 TGCAAGAAAA
9043933 AAAAT-TATATAATAA-ATT
1 AAAATATATATAATAATATT
9043951 AAAATATAT-TAATAATATT
1 AAAATATATATAATAATATT
9043970 AAACATAT
1 AAA-ATAT
9043978 TTTTATACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.46
19 9 0.38
20 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:9046305 original size:40 final size:39
Alignment explanation
Indices: 9046252--9046485 Score: 135
Period size: 39 Copynumber: 5.9 Consensus size: 39
9046242 GAATTCAATC
* *
9046252 ACCAACACAAAGCCTACGGGACTTTAAGCCCAGATATAGT
1 ACCAACACGAAGCCTAC-GGACCTTAAGCCCAGATATAGT
* * * *
9046292 ACCAATACGAAGCCTGCGGACCTTAAGTCCGGATATAGT
1 ACCAACACGAAGCCTACGGACCTTAAGCCCAGATATAGT
* * * * * * *
9046331 ACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAAT
1 ACCAACACGAAGCCTACGGACCTTAAGCCCAGATATAGT
* * * * * * * *
9046370 TCCAGCACGAAGCTTACGGGTCTTTAAGCCCGGATACAAT
1 ACCAACACGAAGCCTAC-GGACCTTAAGCCCAGATATAGT
* * * * * * * *
9046410 TCCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAAT
1 ACCAACACGAAGCCTACGGACCTTAAGCCCAGATATAGT
** * * * *
9046449 TTCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
1 ACCAACACGAAGCCTACGGACCTTAAGCCCAGATATA
9046486 CATCAAATAT
Statistics
Matches: 166, Mismatches: 27, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
39 120 0.72
40 46 0.28
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.20
Consensus pattern (39 bp):
ACCAACACGAAGCCTACGGACCTTAAGCCCAGATATAGT
Found at i:9046328 original size:39 final size:39
Alignment explanation
Indices: 9046298--9046483 Score: 246
Period size: 39 Copynumber: 4.7 Consensus size: 39
9046288 TAGTACCAAT
* *
9046298 ACGAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGC
* *
9046337 ACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGC
* * * * * *
9046376 ACGAAGCTTACGGGTCTTTAAGCCCGGATACAATTCCAGC
1 ACGAAGCCTGC-GGACCTTAAGTCCGGATACAATACCAGC
* **
9046416 ATGAAGCCTGCGGACCTTAAGTCCGGATACAATTTCAGC
1 ACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGC
9046455 ACGAAGCCTGCGGACCTTAAGTCCGGATA
1 ACGAAGCCTGCGGACCTTAAGTCCGGATA
9046484 TACATCAAAT
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 96 0.75
40 32 0.25
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.20
Consensus pattern (39 bp):
ACGAAGCCTGCGGACCTTAAGTCCGGATACAATACCAGC
Found at i:9046403 original size:79 final size:79
Alignment explanation
Indices: 9046314--9046461 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 79
9046304 CCTGCGGACC
* * * *
9046314 TTAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
1 TTAAGCCCGGATACAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
9046379 AAGCTTACGGGTCT
66 AAGCTTACGGGTCT
* * *
9046393 TTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCCGGATACAATTTCAGCACG
1 TTAAGCCCGGATACAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
9046458 AAGC
66 AAGC
9046462 CTGCGGACCT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 62 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (79 bp):
TTAAGCCCGGATACAATACCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
AAGCTTACGGGTCT
Found at i:9047226 original size:72 final size:72
Alignment explanation
Indices: 9047150--9047299 Score: 174
Period size: 72 Copynumber: 2.1 Consensus size: 72
9047140 AATTCATATC
*** * ** * * *
9047150 CATAGTACCATGTTAACCCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAAT
1 CATAGTACCATACAAACCCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAAT
9047215 TCGCACA
66 TCGCACA
* * * *
9047222 CATAGTGCCATACAAATCCGCACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAAT
1 CATAGTACCATACAAACCCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAAT
*
9047287 TTGCACA
66 TCGCACA
9047294 CATAGT
1 CATAGT
9047300 GCCAAAATCA
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (72 bp):
CATAGTACCATACAAACCCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAAT
TCGCACA
Found at i:9047243 original size:24 final size:24
Alignment explanation
Indices: 9047168--9047303 Score: 164
Period size: 24 Copynumber: 5.7 Consensus size: 24
9047158 CATGTTAACC
* **
9047168 CGCACACATAGTGCCTTAGTAATT
1 CGCACACATAGTGCCATACAAATT
* * * * * *
9047192 CACATACATATTGACATTCCAATT
1 CGCACACATAGTGCCATACAAATT
*
9047216 CGCACACATAGTGCCATACAAATC
1 CGCACACATAGTGCCATACAAATT
9047240 CGCACACATAGTGCCATACAAATT
1 CGCACACATAGTGCCATACAAATT
*
9047264 CGCACACATAGTGCCATTCAAATT
1 CGCACACATAGTGCCATACAAATT
*
9047288 TGCACACATAGTGCCA
1 CGCACACATAGTGCCA
9047304 AAATCATTTC
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 94 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATT
Found at i:9047300 original size:72 final size:72
Alignment explanation
Indices: 9047167--9047303 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
9047157 CCATGTTAAC
* ** * * *
9047167 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCCAATTCGCACACATAGTGCCA
1 CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATTCGCACACATAGTGCCA
9047232 TACAAAT
66 TACAAAT
* * *
9047239 CCGCACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTTGCACACATAGTGCCA
1 CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATTCGCACACATAGTGCCA
9047304 AAATCATTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.24
Consensus pattern (72 bp):
CCGCACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATTCGCACACATAGTGCCA
TACAAAT
Found at i:9047312 original size:24 final size:24
Alignment explanation
Indices: 9047241--9047312 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 24
9047231 ATACAAATCC
*
9047241 GCACACATAGTGCCATACAA--ATTC
1 GCACACATAGTGCCA-A-AATCATTT
*
9047265 GCACACATAGTGCC--ATTCAAATTT
1 GCACACATAGTGCCAAAATC--ATTT
9047289 GCACACATAGTGCCAAAATCATTT
1 GCACACATAGTGCCAAAATCATTT
9047313 CGTTTAAACA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
24 35 0.90
26 3 0.08
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCAAAATCATTT
Found at i:9048505 original size:17 final size:17
Alignment explanation
Indices: 9048483--9048516 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9048473 CCCCACTTAA
*
9048483 TATATTATAACTTATTT
1 TATATTATAACATATTT
9048500 TATATTATAACATATTT
1 TATATTATAACATATTT
9048517 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:9049488 original size:9 final size:9
Alignment explanation
Indices: 9049457--9049499 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
9049447 ACTATGATAC
9049457 TTTTGAAGG
1 TTTTGAAGG
* *
9049466 TTTTGGGAGA
1 TTTT-GAAGG
9049476 TTTTGAAGG
1 TTTTGAAGG
*
9049485 TTTTAAAGG
1 TTTTGAAGG
9049494 TTTTGA
1 TTTTGA
9049500 GAGATTTGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (9 bp):
TTTTGAAGG
Found at i:9054356 original size:5 final size:5
Alignment explanation
Indices: 9054334--9054385 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
9054324 TAGGAAGATA
* *
9054334 TTATT TTGTT TTGTT TTATT TTATTAT TTATTT TTATT TTA-T TTATT
1 TTATT TTATT TTATT TTATT TTA-T-T TTA-TT TTATT TTATT TTATT
9054381 TTATT
1 TTATT
9054386 AATTTAGCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
4 4 0.10
5 27 0.64
6 5 0.12
7 6 0.14
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:9054361 original size:23 final size:23
Alignment explanation
Indices: 9054332--9054377 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
9054322 AATAGGAAGA
*
9054332 TATTATTT-TGTTTTGTTTTATTT
1 TATTATTTAT-TTTTATTTTATTT
9054355 TATTATTTATTTTTATTTTATTT
1 TATTATTTATTTTTATTTTATTT
9054378 ATTTTATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.78
Consensus pattern (23 bp):
TATTATTTATTTTTATTTTATTT
Found at i:9055435 original size:97 final size:97
Alignment explanation
Indices: 9055269--9055452 Score: 368
Period size: 97 Copynumber: 1.9 Consensus size: 97
9055259 TTAATTTCTG
9055269 ATTTATTTAATTATTTATCTTAACAGTTTTAATTATTTAGTTTCTAATCAATTTCAAAATCCTCA
1 ATTTATTTAATTATTTATCTTAACAGTTTTAATTATTTAGTTTCTAATCAATTTCAAAATCCTCA
9055334 CTTTACTTATTTATTTTCTTATAACAGTTTTA
66 CTTTACTTATTTATTTTCTTATAACAGTTTTA
9055366 ATTTATTTAATTATTTATCTTAACAGTTTTAATTATTTAGTTTCTAATCAATTTCAAAATCCTCA
1 ATTTATTTAATTATTTATCTTAACAGTTTTAATTATTTAGTTTCTAATCAATTTCAAAATCCTCA
9055431 CTTTACTTATTTATTTTCTTAT
66 CTTTACTTATTTATTTTCTTAT
9055453 TTAGTTTCTA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.54
Consensus pattern (97 bp):
ATTTATTTAATTATTTATCTTAACAGTTTTAATTATTTAGTTTCTAATCAATTTCAAAATCCTCA
CTTTACTTATTTATTTTCTTATAACAGTTTTA
Found at i:9055454 original size:51 final size:51
Alignment explanation
Indices: 9055301--9055487 Score: 212
Period size: 51 Copynumber: 3.8 Consensus size: 51
9055291 ACAGTTTTAA
9055301 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTACTTATTTATTTTC
1 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTACTTATTTATTTTC
** ** ** *
9055352 TTATAACAGTTT-TAATTTATTT---AAT--T-A-TTTATCTTA-ACAGTTTTAA
1 TTAT-TTAGTTTCTAATCAATTTCAAAATCCTCACTTTA-CTTATTTA-TTTT-C
9055398 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTACTTATTTATTTTC
1 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTACTTATTTATTTTC
9055449 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTAC
1 TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTAC
9055488 CAATTTCAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 26
0.73 0.09 0.17
Matches are distributed among these distances:
44 5 0.05
45 14 0.13
46 13 0.12
48 3 0.03
49 3 0.03
51 52 0.48
52 14 0.13
53 5 0.05
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.52
Consensus pattern (51 bp):
TTATTTAGTTTCTAATCAATTTCAAAATCCTCACTTTACTTATTTATTTTC
Found at i:9058828 original size:2 final size:2
Alignment explanation
Indices: 9058821--9058859 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9058811 ATAATAAGCT
9058821 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9058860 TTAAGACAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9064158 original size:99 final size:99
Alignment explanation
Indices: 9063942--9064141 Score: 373
Period size: 99 Copynumber: 2.0 Consensus size: 99
9063932 GGGTATTCGA
* *
9063942 TTATTTAGAGTAAACGAAAGAAATCAAAACCCAGTAAGTTAGGGCACGTTTTCTCGAATTCTCAA
1 TTATTTAGAGTAAACAAAAGAAATCAAAACCCAATAAGTTAGGGCACGTTTTCTCGAATTCTCAA
*
9064007 ACACCGAATATTGCCTTTATTTTAAAATAAATTC
66 ACACCGAATATTGCCTTTATTTTAAAACAAATTC
9064041 TTATTTAGAGTAAACAAAAGAAATCAAAACCCAATAAGTTAGGGCACGTTTTCTCGAATTCTCAA
1 TTATTTAGAGTAAACAAAAGAAATCAAAACCCAATAAGTTAGGGCACGTTTTCTCGAATTCTCAA
9064106 ACACCGAATATTGCCTTTATTTTAAAACAAATTC
66 ACACCGAATATTGCCTTTATTTTAAAACAAATTC
9064140 TT
1 TT
9064142 GTTTCGAGGT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (99 bp):
TTATTTAGAGTAAACAAAAGAAATCAAAACCCAATAAGTTAGGGCACGTTTTCTCGAATTCTCAA
ACACCGAATATTGCCTTTATTTTAAAACAAATTC
Found at i:9064877 original size:2 final size:2
Alignment explanation
Indices: 9064832--9064860 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9064822 TATGGAGTAT
9064832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9064861 TAAAAGGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9065181 original size:30 final size:29
Alignment explanation
Indices: 9065147--9065250 Score: 79
Period size: 30 Copynumber: 3.4 Consensus size: 29
9065137 ATAAATATAT
9065147 ATAAAATATATATATATGTATAAGTATTAA
1 ATAAAATATA-ATATATGTATAAGTATTAA
* * *
9065177 ATAAAA-ATGATA-ATGATAGAATGCTAATAA
1 ATAAAATATAATATATG-TATAA-G-TATTAA
*
9065207 ATAAAATATAATATTATGAATAA-TATTAAA
1 ATAAAATATAATA-TATGTATAAGTATT-AA
*
9065237 ATTAAAATAGAATA
1 A-TAAAATATAATA
9065251 ATGAGAAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
27 3 0.05
28 7 0.12
29 6 0.10
30 20 0.34
31 16 0.28
32 3 0.05
33 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.34
Consensus pattern (29 bp):
ATAAAATATAATATATGTATAAGTATTAA
Done.