Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 280 of 345
Found at i:83504281 original size:29 final size:29
Alignment explanation
Indices: 83504242--83504320 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
83504232 CTTAATAATC
*
83504242 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
83504272 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
83504301 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
83504321 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:83509410 original size:6 final size:6
Alignment explanation
Indices: 83509399--83509425 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
83509389 TATAGCAGCT
83509399 ACCAGA ACCAGA ACCAGA ACCAGA ACC
1 ACCAGA ACCAGA ACCAGA ACCAGA ACC
83509426 GCAATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.37, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCAGA
Found at i:83515341 original size:3 final size:3
Alignment explanation
Indices: 83515319--83515367 Score: 71
Period size: 3 Copynumber: 15.3 Consensus size: 3
83515309 ATTGTTGTTC
83515319 ATA ATA TATAA ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA -AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83515367 A
1 A
83515368 CAGTCATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 35 0.80
4 8 0.18
5 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83515884 original size:31 final size:28
Alignment explanation
Indices: 83515846--83515917 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
83515836 TTAATATAAT
83515846 ATTTGATACTTAAATTTTACAATTTTTTTTA
1 ATTTGATACTTAAA-TTT--AATTTTTTTTA
* *
83515877 ATTTGATATTTAAATTTGATTTTTTTTA
1 ATTTGATACTTAAATTTAATTTTTTTTA
83515905 ATTTGATACTTAA
1 ATTTGATACTTAA
83515918 GCTTTTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.58
30 3 0.08
31 13 0.34
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (28 bp):
ATTTGATACTTAAATTTAATTTTTTTTA
Found at i:83515909 original size:15 final size:15
Alignment explanation
Indices: 83515867--83515911 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
83515857 AAATTTTACA
83515867 ATTTTTTTTAATTTG
1 ATTTTTTTTAATTTG
* *
83515882 A--TATTTAAATTTG
1 ATTTTTTTTAATTTG
83515895 ATTTTTTTTAATTTG
1 ATTTTTTTTAATTTG
83515910 AT
1 AT
83515912 ACTTAAGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
13 11 0.46
15 13 0.54
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
ATTTTTTTTAATTTG
Found at i:83517921 original size:15 final size:15
Alignment explanation
Indices: 83517890--83517918 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
83517880 ACTATTAGTA
83517890 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
83517905 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
83517919 TATCATATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:83521250 original size:29 final size:29
Alignment explanation
Indices: 83521218--83521297 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
83521208 AGCCTTCATG
*
83521218 CTCCCTCATTTCTTCTTTCAACCTTCAAA
1 CTCCCTCATTTCTTCATTCAACCTTCAAA
* * ** *
83521247 CTCCCTCCTTTCTTCACTCTTCCTTCAAG
1 CTCCCTCATTTCTTCATTCAACCTTCAAA
*
83521276 CTCCCT-ACTTTCTTCCTTCAAC
1 CTCCCTCA-TTTCTTCATTCAAC
83521298 TCTCATCATC
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.15, C:0.42, G:0.01, T:0.41
Consensus pattern (29 bp):
CTCCCTCATTTCTTCATTCAACCTTCAAA
Found at i:83522286 original size:16 final size:16
Alignment explanation
Indices: 83522265--83522296 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83522255 AGACATGTAT
83522265 GTCTCAAATTCATTAC
1 GTCTCAAATTCATTAC
*
83522281 GTCTCAAATTGATTAC
1 GTCTCAAATTCATTAC
83522297 AATAACCTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (16 bp):
GTCTCAAATTCATTAC
Found at i:83522766 original size:670 final size:667
Alignment explanation
Indices: 83520606--83523249 Score: 3540
Period size: 670 Copynumber: 4.0 Consensus size: 667
83520596 CTGCCTTTAG
* *
83520606 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTTATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * *
83520671 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAACCTCTTGCATGGTTAGTCCTTTTTATAATCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * *
83520736 CTTATATAAAAATTCTGTACCTTCTCACACATTCTGATTTAGGAGAAAAGCTGTTTAAAGTCTTT
131 CTTATATAAAGATTCTCTACCTTCTCACACATTCTGATTTAGGAGAAAATCTGTTTAAAGTCTTT
* * * * * *
83520801 ATGAGCCCGTGGTGTTATGGTCCTATTATGTTCTATATTTGGTAGTTGATTCTGCTTTTTGGTTA
196 ATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGCAGTTGATTCTCCTTTCTGGTTA
* * * *
83520866 TTTGTTCCCTGCTAATGTTTACACGTTTTTGAGGAATTATGGTATTATAGTAAAGACATGTCCGT
261 TTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAATAAAGACATGTACGT
* ** *
83520931 CTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATTTCACCTCTAACAAAGTCTATT
326 CTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTC-AAAAAAGTCTATT
* *
83520996 ATCGAAATAATTGAATCCAAATACTATAATAATACGAGTAAATATGGTGATTAGTAATAT-AAAC
390 ATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAAC
* * * *
83521060 CATATCAACAGTTAACATTTTCAATATAAAAAACGGTTTTATTGTGGTTTTAGTCCCACTAATAT
455 CATAACAACAGTTAACATTTTCAATATAAAAAATGGTTATACTGTGGTTTTAGTCCCACTAATAT
* *
83521125 AA-TT-TTTTTTA---AGAATAAGATAAAATCACAAGAATCTAAAAATTACACTACGAAAATTAC
520 AATTTCTTTTTTATTTAGAATAAGACAAAATCATAAGAATCTAAAAATTACACTACGAAAATTAC
* * *
83521185 ACAAAAATCACAAGACAGCCTTTAGCCTTCATGCTCCCTCATTTCTTCTTTCAACCTTCAAACTC
585 ACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTC
*
83521250 CCTCCTTTCTTCACTCTT
650 CCTCATTTCTTCACTCTT
* *
83521268 CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATGTTTCTCATTCTTTTCATTGTTT
1 CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* *
83521333 ACTTATTTTCGACTCTAAAATGTTTGGAATAAAAACTATTGCATGGTCAGCCCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * ** * * * * *
83521398 TTTATACATCGATTTTGTACCTTCTCATACATTCTGCTTTAAGAGAAAA-CTGTTTAAAGTC-TT
131 CTTATATAAAGATTCTCTACCTTCTCACACATTCTGATTTAGGAGAAAATCTGTTTAAAGTCTTT
* * **
83521461 ATGAGTCAATGGTGTTATGGTCTTATTATGTTCCATATTTGGCAGTTGATTCTCCACTC-GAGTT
196 ATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGCAGTTGATTCTCCTTTCTG-GTT
* * * *
83521525 ATTTGTTCCCTACTAATG-TTACACGTTCTTGGAGAAATATGGTATTATAGTAAAGACATGTACG
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAATAAAGACATGTACG
* * * * *
83521589 TCTCAAATTCATTATGCCTCAAATTTATGACAATAACCTACAATGCCACCTTCAACAAAGTCTAT
325 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACC-TCAAAAAAGTCTAT
* * *
83521654 TATTGAAATAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGAAATATAAAA
389 TATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAA
* ** *
83521719 CCATAACAACAGTTAACATTTTCAATATAAAAAATGGTTATACTATGGCCTTAGTCCTACTAATA
454 CCATAACAACAGTTAACATTTTCAATATAAAAAATGGTTATACTGTGGTTTTAGTCCCACTAATA
* * *
83521784 TAATTTTTCTTTCTTTTTTTTATTTAAAATAAGACAAAATCACAAGGATCTAAAAATTACACTTA
519 TAA------TTTC--TTTTTTATTTAGAATAAGACAAAATCATAAGAATCTAAAAATTACAC-TA
* * * *
83521849 CGAAAATTACACAAAAATCACAAGATTGCCTTTAGCCTTCAAGCTTCGTCCTTTTTTCTTTCAAC
575 CGAAAATTACACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAAC
**
83521914 CTTCAAACTCCCTCATTTCAACACTCTT
640 CTTCAAACTCCCTCATTTCTTCACTCTT
* * * * *
83521942 CCTTCGAGCTCCCTAATTTCCTCTTTCAACTCTCATAATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
** * * *
83522007 ACTTATTTTTTACTCTAAAATGTTTGGAATAGAAACTGTTGAATGGTCAGCCCTTTTTATAACCC
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* ** * *
83522072 CTTATATAAAGATTATGC-ACCTTCTCGTACATTTTGATTTAGGAGAAAATCTGTTTAAAGCCTT
131 CTTATATAAAGATTCT-CTACCTTCTCACACATTCTGATTTAGGAGAAAATCTGTTTAAAGTCTT
* * *
83522136 TATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGTAGTTGATTTTGCTTTCTGGTT
195 TATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGCAGTTGATTCTCCTTTCTGGTT
* * *
83522201 ATTTGTTCCTTGCTAATGTTTACACGTTTTTGGGGAATTATGGTATTATAATAAAGACATGTATG
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAATAAAGACATGTACG
* ** * *
83522266 TCTCAAATTCATTACGTCTCAAATTGATTACAATAACCTGTAATGCCACATCAAAAAAGTCTCTT
325 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCAAAAAAGTCTATT
*
83522331 ATCGAAAAAATTGAATCCAAATACTATAATAATACGAGTAAATATGGTGATTAGTAATATAAAAC
390 ATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAAC
* * * * * * *
83522396 CATATCAACAGTTAGCATTTTAAATATAGAAAATAGTTAAACCGTGGTTTTAGTCCCACTAATAT
455 CATAACAACAGTTAACATTTTCAATATAAAAAATGGTTATACTGTGGTTTTAGTCCCACTAATAT
* *
83522461 AATTTTTCTTTTTTATTTAGAATAAGACAAAATCATAGGAATCTGAAAATTACACGTACGAAAAT
520 AA--TTTCTTTTTTATTTAGAATAAGACAAAATCATAAGAATCTAAAAATTACAC-TACGAAAAT
* * * *
83522526 TACACAAAATTTACAAGACTGCCTTTAGCCTTCATGCACCCTCCTTTCTTCTTTCAACCTTCAAA
582 TACACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAA
*
83522591 CTCCCTCATTTCTTCACTTTT
647 CTCCCTCATTTCTTCACTCTT
* * * *
83522612 CCTTCAAGCTCCCTACTTTCTTCCTTGAACTCTCGTCATTATATTTCTCATCCTTTTCACTGTTT
1 CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * ** * *
83522677 ACTTATTTTGGACTCTAAAATGTTTGGAATAGAGACTCTTGCATGGGGAACCCTTTTTACAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* ** * *
83522742 CTTCTATAGCGATTCTCTACCTTCTCGCACATTCTGATTTAGGAGAAAAGT-TGTTTAAAATCTT
131 CTTATATAAAGATTCTCTACCTTCTCACACATTCTGATTTAGGAGAAAA-TCTGTTTAAAGTCTT
* * * * *
83522806 TTTGAGTCCATGGTTTTATGGTCCTATTATGTTCCCTATTTGGCAGTTTATTCTCCTCTT-TTGT
195 TATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGCAGTTGATTCTCCT-TTCTGGT
*
83522870 TATTTGTTCCCTGCTAATGTTTACACGTTTTTAGGGAAATATGGTATTATAATAAAGACATGTAC
259 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAATAAAGACATGTAC
* * * *
83522935 ATCTCAATTTCATTACGTCTCAAATTGATCATAATAACCTACAATGCCACCTCAAAAAATGTCTC
324 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCAAAAAA-GTCTA
* * * *
83523000 TTATCGAAAAAATTGAATCCAAATAGTTTAATAAAACGAGCAAATTTGGTGATTAGTAATATAAA
388 TTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
** * * * * *
83523065 ATGAAAACAAAAGTTAGA-ATTTTCAATATAAAAAATGATTATATTGTGGTTTTAGTCCCTCTAA
453 ACCATAACAACAGTTA-ACATTTTCAATATAAAAAATGGTTATACTGTGGTTTTAGTCCCACTAA
*** * *
83523129 TATAAAAAC--TTTT-TTTAGAATAAGACAAAATTATAAGAATCTAAAAATTACACCTATGAAAA
517 TATAATTTCTTTTTTATTTAGAATAAGACAAAATCATAAGAATCTAAAAATTACA-CTACGAAAA
*
83523191 TTACACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCCTTCAAC
581 TTACACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAAC
83523250 TCTCATCATC
Statistics
Matches: 1731, Mismatches: 223, Indels: 52
0.86 0.11 0.03
Matches are distributed among these distances:
659 155 0.09
660 136 0.08
661 12 0.01
662 160 0.09
666 97 0.06
667 7 0.00
669 2 0.00
670 462 0.27
671 122 0.07
672 5 0.00
673 34 0.02
674 240 0.14
675 11 0.01
676 203 0.12
677 85 0.05
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (667 bp):
CCTTCAAGCTCCCTACTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
CTTATATAAAGATTCTCTACCTTCTCACACATTCTGATTTAGGAGAAAATCTGTTTAAAGTCTTT
ATGAGTCCATGGTGTTATGGTCCTATTATGTTCCATATTTGGCAGTTGATTCTCCTTTCTGGTTA
TTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAATAAAGACATGTACGT
CTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCAAAAAAGTCTATTA
TCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACC
ATAACAACAGTTAACATTTTCAATATAAAAAATGGTTATACTGTGGTTTTAGTCCCACTAATATA
ATTTCTTTTTTATTTAGAATAAGACAAAATCATAAGAATCTAAAAATTACACTACGAAAATTACA
CAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCC
CTCATTTCTTCACTCTT
Found at i:83523851 original size:29 final size:29
Alignment explanation
Indices: 83523798--83523854 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
83523788 AGCCTTCATG
**
83523798 CTCCCTCATTTCTTCTTTCAACCTTCAAA
1 CTCCCTCATTTCTTCACTCAACCTTCAAA
**
83523827 CTCCCTCATTTCTTCACTCTTCCTTCAA
1 CTCCCTCATTTCTTCACTCAACCTTCAA
83523855 GCTCTCTACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.18, C:0.40, G:0.00, T:0.42
Consensus pattern (29 bp):
CTCCCTCATTTCTTCACTCAACCTTCAAA
Found at i:83530271 original size:40 final size:39
Alignment explanation
Indices: 83530212--83530356 Score: 112
Period size: 40 Copynumber: 3.6 Consensus size: 39
83530202 AAATTGAATG
* * *
83530212 ATATCCGGGCTAAGCCCCGAGGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAGG-CAATTATGCTAGAAACT
* * ***
83530252 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCG-AGGCAATTATGCTAGAAACT
* * ** *
83530292 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCG-AGGCAATT-ATGCTAGAAACT
*
83530332 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCG-AGGCA
83530357 TTTGTGCACG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 82 0.93
41 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAGGCAATTATGCTAGAAACT
Found at i:83530357 original size:40 final size:39
Alignment explanation
Indices: 83530251--83530379 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
83530241 TGCTGGAAAT
* * *
83530251 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
83530291 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
83530331 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
83530371 TATATCCGG
1 TATATCCGG
83530380 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:83541917 original size:80 final size:80
Alignment explanation
Indices: 83541833--83541981 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
83541823 TATGGTAACC
* * * *
83541833 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
83541897 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
83541913 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
83541978 CCGG
66 CCGG
83541982 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:83541923 original size:40 final size:38
Alignment explanation
Indices: 83541874--83541981 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
83541864 ATCACGATTT
*
83541874 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
83541914 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
83541954 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
83541982 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:83546438 original size:40 final size:40
Alignment explanation
Indices: 83546379--83546520 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
83546369 AAATTGAATG
* * *
83546379 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
83546419 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
83546459 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
83546499 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
83546521 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:83546521 original size:40 final size:39
Alignment explanation
Indices: 83546418--83546546 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
83546408 TGCTGGAAAT
* * *
83546418 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
83546458 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
83546498 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
83546538 TATATCCGG
1 TATATCCGG
83546547 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:83549614 original size:19 final size:18
Alignment explanation
Indices: 83549577--83549620 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
83549567 ATACATACAG
83549577 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
83549594 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
83549613 TACTAATT
1 TAATAATT
83549621 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:83564088 original size:45 final size:45
Alignment explanation
Indices: 83564024--83564242 Score: 286
Period size: 45 Copynumber: 5.0 Consensus size: 45
83564014 TATTGTACAG
*
83564024 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
83564069 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
83564114 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
83564159 TAATATTCGGGCCTTTGAGCCTAGCAGGCGA-AATACCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * * *
83564202 TGA--ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
83564243 TTTGATAAAA
Statistics
Matches: 157, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
42 31 0.20
43 2 0.01
44 11 0.07
45 113 0.72
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:83567336 original size:30 final size:30
Alignment explanation
Indices: 83567291--83567349 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
83567281 ATTTAATACG
83567291 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
83567321 AACTTTTGCATAATTACACTTTTTCCCCT
1 AACTTTGGCAAAATTACACTTTTTCCCCT
83567350 GGGCTCGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:83574871 original size:45 final size:45
Alignment explanation
Indices: 83574807--83575027 Score: 326
Period size: 45 Copynumber: 5.0 Consensus size: 45
83574797 TATTGTACAG
83574807 TACTATTC-GAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCAG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
83574852 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
83574897 TATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
83574942 TGA-TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 T-ACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
83574987 TATTATTCGGGCC-TTGAGCCTAGCAGG-TGA-AATGCCGGTGA
1 TACTATTCAGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGA
83575028 ATGAATTTAG
Statistics
Matches: 166, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
43 12 0.07
44 16 0.10
45 136 0.82
46 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:83578927 original size:29 final size:29
Alignment explanation
Indices: 83578893--83578995 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
83578883 TAATCAGCCG
** *
83578893 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
83578922 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
83578951 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
83578980 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
83578996 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:83587002 original size:29 final size:29
Alignment explanation
Indices: 83586968--83587070 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
83586958 TAATCAGCCG
** *
83586968 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
83586997 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
83587026 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
83587055 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
83587071 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:83593036 original size:17 final size:17
Alignment explanation
Indices: 83593014--83593059 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
83593004 AAATAAAAAT
83593014 AAAAATGATAAATGATA
1 AAAAATGATAAATGATA
83593031 AAAAATGATAAATGATA
1 AAAAATGATAAATGATA
83593048 AAAAATGA-AAAT
1 AAAAATGATAAAT
83593060 ATCATCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 4 0.14
17 25 0.86
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (17 bp):
AAAAATGATAAATGATA
Found at i:83593572 original size:21 final size:21
Alignment explanation
Indices: 83593521--83593572 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
83593511 TTTTGCCTAA
83593521 GATG-TAAATTGGACTAAATT
1 GATGTTAAATTGGACTAAATT
* * *
83593541 GA-GTATGAATTGTATTAAATT
1 GATGT-TAAATTGGACTAAATT
83593562 GATGTTAAATT
1 GATGTTAAATT
83593573 TACTCATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.08
21 20 0.80
22 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
GATGTTAAATTGGACTAAATT
Found at i:83597026 original size:28 final size:27
Alignment explanation
Indices: 83596990--83597048 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
83596980 CAGAAATAGT
* *
83596990 ATCAGGTGGGCCTTAGCCCAATAACAGA
1 ATCAAGTGGGCCTAAGCCCAAT-ACAGA
83597018 ATCAAGTGGGCCTAAGCCCAATACAGA
1 ATCAAGTGGGCCTAAGCCCAATACAGA
83597045 ATCA
1 ATCA
83597049 GTATCAGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 9 0.31
28 20 0.69
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (27 bp):
ATCAAGTGGGCCTAAGCCCAATACAGA
Found at i:83599304 original size:10 final size:10
Alignment explanation
Indices: 83599287--83599331 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
83599277 AATTTAATTT
83599287 TTTTCTTTTA
1 TTTTCTTTTA
*
83599297 TGTTCTTTTAA
1 TTTTCTTTT-A
83599308 TTTTCTTTT-
1 TTTTCTTTTA
*
83599317 TTTTCTTTTT
1 TTTTCTTTTA
83599327 TTTTC
1 TTTTC
83599332 ATTCCCTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.29
10 13 0.42
11 9 0.29
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:83599326 original size:21 final size:21
Alignment explanation
Indices: 83599287--83599325 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
83599277 AATTTAATTT
83599287 TTTTCTTTTATGTTCTTTTAA
1 TTTTCTTTTATGTTCTTTTAA
*
83599308 TTTTCTTTT-TTTTCTTTT
1 TTTTCTTTTATGTTCTTTT
83599326 TTTTTCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.08, C:0.10, G:0.03, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTATGTTCTTTTAA
Found at i:83606053 original size:3 final size:3
Alignment explanation
Indices: 83606045--83606082 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
83606035 GGTGTTTTTT
83606045 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
83606083 TTAAAGTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:83608542 original size:40 final size:41
Alignment explanation
Indices: 83608497--83608663 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
83608487 CGGAATATAA
*
83608497 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
83608537 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83608577 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83608617 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
83608656 CCGGATAT
1 CCGGATAT
83608664 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83609509 original size:17 final size:19
Alignment explanation
Indices: 83609486--83609531 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
83609476 AAGAAGCATG
83609486 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
83609504 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
83609522 AATCATGCTC
1 AATCATGCTC
83609532 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:83616549 original size:39 final size:40
Alignment explanation
Indices: 83616505--83616670 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
83616495 CGGAATATAA
*
83616505 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
83616544 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
83616584 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
83616624 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83616663 CCGGATAT
1 CCGGATAT
83616671 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83617514 original size:17 final size:19
Alignment explanation
Indices: 83617491--83617536 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
83617481 AAGAAGCATG
83617491 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
83617509 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
83617527 AATCATGCTC
1 AATCATGCTC
83617537 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:83626379 original size:6 final size:6
Alignment explanation
Indices: 83626358--83626414 Score: 87
Period size: 6 Copynumber: 9.2 Consensus size: 6
83626348 AAGAAAAAAT
*
83626358 AAATACA AAATGAA AAATAA AAATAA AGATAA AAATAA AAATAA AAATAA
1 AAATA-A AAAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
83626408 AAATAA A
1 AAATAA A
83626415 GATAGATGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
6 37 0.79
7 9 0.19
8 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:83628135 original size:3 final size:3
Alignment explanation
Indices: 83628129--83628172 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
83628119 AAAAAAGTAA
* *
83628129 AAT AAT AAA AAT AAT AAT AAT AAT AAT AGA- AAA AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA
83628173 ACAAATGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
2 1 0.03
3 34 0.94
4 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:83628146 original size:12 final size:12
Alignment explanation
Indices: 83628129--83628173 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
83628119 AAAAAAGTAA
83628129 AATAATAAAAAT
1 AATAATAAAAAT
*
83628141 AATAATAATAAT
1 AATAATAAAAAT
83628153 AATAGA-AAAAAT
1 AATA-ATAAAAAT
83628165 AATAATAAA
1 AATAATAAA
83628174 CAAATGAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 1 0.03
12 27 0.93
13 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (12 bp):
AATAATAAAAAT
Found at i:83635437 original size:30 final size:30
Alignment explanation
Indices: 83635403--83635462 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83635393 ACTTAACAAG
83635403 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
83635433 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
83635463 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:83639377 original size:29 final size:30
Alignment explanation
Indices: 83639344--83639402 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83639334 ATTTAATACG
*
83639344 AACTTTGGCA-AATTAC-GTTTTTGCCCCTA
1 AACTTTGGCATAATTACACTTTTT-CCCCTA
*
83639373 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCATAATTACACTTTTTCCCCTA
83639403 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 9 0.35
30 12 0.46
31 5 0.19
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (30 bp):
AACTTTGGCATAATTACACTTTTTCCCCTA
Found at i:83648520 original size:46 final size:46
Alignment explanation
Indices: 83648465--83648645 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
83648455 TAGGATGGTT
83648465 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
83648511 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
83648557 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
83648604 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83648646 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:83648626 original size:93 final size:93
Alignment explanation
Indices: 83648467--83648637 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
83648457 GGATGGTTGA
* *
83648467 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83648532 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83648560 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83648625 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83648638 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83651059 original size:13 final size:13
Alignment explanation
Indices: 83651041--83651065 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83651031 AAGTTGAGTT
83651041 AATTTTATATTGG
1 AATTTTATATTGG
83651054 AATTTTATATTG
1 AATTTTATATTG
83651066 TAAAAAGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
AATTTTATATTGG
Found at i:83659538 original size:14 final size:14
Alignment explanation
Indices: 83659519--83659550 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
83659509 AAATGAACGA
83659519 GGTAAAACATAGTT
1 GGTAAAACATAGTT
83659533 GGTAAAACATAGTT
1 GGTAAAACATAGTT
83659547 GGTA
1 GGTA
83659551 TATTGATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.28
Consensus pattern (14 bp):
GGTAAAACATAGTT
Found at i:83667685 original size:38 final size:40
Alignment explanation
Indices: 83667637--83667712 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
83667627 TATTTTAGTT
83667637 TGTGTCTTTAATTATGT-CTT-ATTTTGAACATCATTAATA
1 TGTGTCTTTAATTATGTCCTTAATTTTG-ACATCATTAATA
83667676 TGTGT-TTTAATTATGTGCCTTAATTTTGACATCATTA
1 TGTGTCTTTAATTATGT-CCTTAATTTTGACATCATTA
83667713 GTAACACCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
38 11 0.32
39 5 0.15
40 12 0.35
41 6 0.18
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.51
Consensus pattern (40 bp):
TGTGTCTTTAATTATGTCCTTAATTTTGACATCATTAATA
Found at i:83668700 original size:38 final size:38
Alignment explanation
Indices: 83668655--83668775 Score: 163
Period size: 38 Copynumber: 3.1 Consensus size: 38
83668645 CTTTAAGCTT
*
83668655 AGATATAATACCAGCACTAGGCCTGCGGGATTTAACCC
1 AGATATAATACCAGCACTAAGCCTGCGGGATTTAACCC
*
83668693 AGATATAATACCAGCACGAAGCCTGCGGGATTTAACCC
1 AGATATAATACCAGCACTAAGCCTGCGGGATTTAACCC
* * *
83668731 GGATATAATTCCAGCA-TAAAGCCTGCGGGTCTTTAACCCC
1 AGATATAATACCAGCACT-AAGCCTGCGGG-ATTTAA-CCC
83668771 AGATA
1 AGATA
83668776 CACATCAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 61 0.84
39 5 0.07
40 7 0.10
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
AGATATAATACCAGCACTAAGCCTGCGGGATTTAACCC
Found at i:83668756 original size:76 final size:80
Alignment explanation
Indices: 83668624--83668775 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 80
83668614 CGAACACAAC
** *
83668624 ACCAGCACGAAGCCTACGAGACTTTAAGCTTAGATATAATACCAGCACTAGGCCTGCGGG-ATTT
1 ACCAGCACGAAGCCTACGAGACTTTAAGCCCAGATATAATACCAGCACTAAGCCTGCGGGTATTT
83668688 AA-CCCAGATATAAT
66 AACCCCAGATATAAT
* * * * *
83668702 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAATTCCAGCA-TAAAGCCTGCGGGTCTT
1 ACCAGCACGAAGCCTACGAGACTTTAAGCCCAGATATAATACCAGCACT-AAGCCTGCGGGTATT
83668764 TAACCCCAGATA
65 TAACCCCAGATA
83668776 CACATCAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
75 1 0.02
76 25 0.40
77 10 0.16
78 27 0.43
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (80 bp):
ACCAGCACGAAGCCTACGAGACTTTAAGCCCAGATATAATACCAGCACTAAGCCTGCGGGTATTT
AACCCCAGATATAAT
Found at i:83672613 original size:31 final size:28
Alignment explanation
Indices: 83672562--83672622 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 28
83672552 CATTGTAACA
* *
83672562 ATATATTTTTTTTCATATTATTATTCATT
1 ATATATTTTTTTTCAAATTATT-TTAATT
83672591 ATATATTATTTTTTACAAATTATTTTAATT
1 ATATATT-TTTTTT-CAAATTATTTTAATT
83672621 AT
1 AT
83672623 TTTAAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 7 0.25
30 13 0.46
31 8 0.29
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (28 bp):
ATATATTTTTTTTCAAATTATTTTAATT
Found at i:83675316 original size:42 final size:42
Alignment explanation
Indices: 83675270--83675354 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
83675260 AACACATATA
*
83675270 AATCACATATTAACATGTATAATACATAACATCAACTCACAT
1 AATCACATATTAACATATATAATACATAACATCAACTCACAT
83675312 AATCACATATTAACATATATAATACATAACATCAACTCACAT
1 AATCACATATTAACATATATAATACATAACATCAACTCACAT
83675354 A
1 A
83675355 TTCATAACCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.49, C:0.21, G:0.01, T:0.28
Consensus pattern (42 bp):
AATCACATATTAACATATATAATACATAACATCAACTCACAT
Found at i:83676273 original size:57 final size:58
Alignment explanation
Indices: 83676201--83676310 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
83676191 GTGCCCACTG
*
83676201 ACCGATCTCGCACACATAGTGCTCGGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * * * *
83676258 ACCGATTTCGTACACATAGTGCTCGGTTAAAAGAATTTGTACACACAGTGCCT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCT
83676311 AAGTCTATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:83676564 original size:22 final size:23
Alignment explanation
Indices: 83676538--83676581 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
83676528 CAATATATAC
*
83676538 ATATCATATACA-CATTGACATT
1 ATATCATAGACATCATTGACATT
*
83676560 ATATCATAGACATCATTTACAT
1 ATATCATAGACATCATTGACAT
83676582 GTAGGCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATCATAGACATCATTGACATT
Found at i:83678074 original size:38 final size:38
Alignment explanation
Indices: 83677992--83678181 Score: 218
Period size: 38 Copynumber: 4.9 Consensus size: 38
83677982 CGAACACAAC
* * * *
83677992 ACCAGCACGAAGCCTACGGGACTCTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
83678032 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
83678070 ACCAGCACGAAGCCTGCGGGATTTAATCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
83678108 ACCAGCACGAAGTCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * ** *
83678146 TCCAACATAAAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATA
83678182 CACATCAAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 95 0.74
39 9 0.07
40 25 0.19
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:83681448 original size:39 final size:39
Alignment explanation
Indices: 83681399--83681571 Score: 159
Period size: 40 Copynumber: 4.4 Consensus size: 39
83681389 CGTTTGAATG
*
83681399 AAAAACGCCGCTAAAGAACGACCATTAGCGGCGCTTTTA
1 AAAAACGCCGCTAAAGATCGACCATTAGCGGCGCTTTTA
* * **
83681438 AAAAATGCCGCTAAAGATCGAGCATTAGCGGTTCTTATTA
1 AAAAACGCCGCTAAAGATCGACCATTAGCGGCGCTT-TTA
* * * ** * *
83681478 AAAAACGCCACTATAGGTTAACCTTTAGCAGCGCTTTTCA
1 AAAAACGCCGCTAAAGATCGACCATTAGCGGCGCTTTT-A
* * * * *
83681518 AAAAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTACA
1 AAAAACGCCGCTAAAGATCGACCATTAGCGGCGCTTT-TA
83681558 AAAAACGCCG-TAAA
1 AAAAACGCCGCTAAA
83681572 AAATTTAACA
Statistics
Matches: 105, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
39 36 0.34
40 69 0.66
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (39 bp):
AAAAACGCCGCTAAAGATCGACCATTAGCGGCGCTTTTA
Found at i:83681977 original size:15 final size:14
Alignment explanation
Indices: 83681958--83681992 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
83681948 ATTATTTTAA
*
83681958 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
83681972 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
83681987 GGTTTA
1 GGTTTA
83681993 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:83681978 original size:22 final size:23
Alignment explanation
Indices: 83681930--83681988 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
83681920 ATGGTTAAGG
* *
83681930 GTTTAATGTTTAT-GAGTTATTA
1 GTTTAAGGTTTATGGAGTTATGA
*
83681952 TTTTAAGGTTTATGGA-TTATGA
1 GTTTAAGGTTTATGGAGTTATGA
* *
83681974 GTTTAGGGATTATGG
1 GTTTAAGGTTTATGG
83681989 TTTAAGGGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (23 bp):
GTTTAAGGTTTATGGAGTTATGA
Found at i:83681996 original size:15 final size:14
Alignment explanation
Indices: 83681958--83682020 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
83681948 ATTATTTTAA
* *
83681958 GGTTTATGGATTAT
1 GGTTTAAGGGTTAT
83681972 GAGTTT-AGGGATTAT
1 G-GTTTAAGGG-TTAT
83681987 GGTTTAAGGG---T
1 GGTTTAAGGGTTAT
*
83681998 GGTTTAAGGGTTGT
1 GGTTTAAGGGTTAT
83682012 GGTTTAAGG
1 GGTTTAAGG
83682021 TTTAAGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
11 11 0.27
14 17 0.41
15 13 0.32
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
GGTTTAAGGGTTAT
Found at i:83682206 original size:14 final size:14
Alignment explanation
Indices: 83682189--83682227 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
83682179 ATCATTATAG
83682189 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
* *
83682203 TTTAGGGTATATGG
1 TTTAGGGTTTATGA
*
83682217 TTTAGAGTTTA
1 TTTAGGGTTTA
83682228 AAGTGTATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:83682269 original size:15 final size:15
Alignment explanation
Indices: 83682251--83682298 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
83682241 ATTATTTTAA
83682251 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
83682266 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
83682280 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
83682295 GGTT
1 GGTT
83682299 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:83682271 original size:22 final size:21
Alignment explanation
Indices: 83682246--83682295 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
83682236 GAGTTATTAT
*
83682246 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
83682268 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
83682289 TTTAAGG
1 TTTAAGG
83682296 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:83682304 original size:14 final size:15
Alignment explanation
Indices: 83682287--83682327 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
83682277 TATGGTTTAT
83682287 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
83682301 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
83682316 GG-TTAAGGGTTA
1 GGTTTAAGGGTTA
83682328 AGTGTTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.44, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:83682318 original size:21 final size:21
Alignment explanation
Indices: 83682280--83682319 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
83682270 TAGGGATTAT
* *
83682280 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGCTTAAGGGTTGG
*
83682301 GGTTTAAGGCTTAGGGGTT
1 GGTTTAAGGCTTAAGGGTT
83682320 AAGGGTTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.42, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGCTTAAGGGTTGG
Found at i:83689163 original size:43 final size:43
Alignment explanation
Indices: 83689102--83689249 Score: 251
Period size: 43 Copynumber: 3.4 Consensus size: 43
83689092 TTTTAATTTT
*
83689102 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
1 ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
* *
83689145 ATGACATTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGCC
1 ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
83689188 ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
1 ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
* *
83689231 ATGGCCTTTAGCGGCGTTT
1 ATGACATTTAGCGGCGTTT
83689250 TTTTTGCGGC
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 98 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (43 bp):
ATGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCC
Found at i:83694312 original size:51 final size:49
Alignment explanation
Indices: 83694257--83694405 Score: 166
Period size: 51 Copynumber: 3.1 Consensus size: 49
83694247 CTACCACATA
* *
83694257 ACATGCAACACATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AACGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG-T
* * * *
83694308 ACATGAATCGCATCCATCATGAACTCGAACCACTCAATGAGCTCGGATG-
1 ACATGAA-CGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGT
83694357 -C-T---CGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT
1 ACATGAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG-T
83694402 ACAT
1 ACAT
83694406 ACCTCACGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
43 37 0.45
46 1 0.01
47 2 0.02
48 1 0.01
50 2 0.02
51 40 0.48
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (49 bp):
ACATGAACGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGT
Found at i:83694376 original size:43 final size:43
Alignment explanation
Indices: 83694315--83694401 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
83694305 GTTACATGAA
* *
83694315 TCGCATCCATCATGAACTCGAACCACTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
* *
83694358 TCGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
83694401 T
1 T
83694402 ACATACCTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGC
Found at i:83694431 original size:42 final size:43
Alignment explanation
Indices: 83694318--83694433 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
83694308 ACATGAATCG
* * * * * *
83694318 CATCCATCATGAACTCGAACCACTCAATGAGCTCGGATGCTCG
1 CATCCATAACGAACCCGGACCACTCAACGAGCTCGGATGCTCA
* * *
83694361 CATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATGCT-A
1 CATCCATAACGAACCCGGACCACTCAACGAGCTCGGATGCTCA
*
83694403 CATACC-TCACGAACCCGGACCACTCAACGAG
1 CAT-CCATAACGAACCCGGACCACTCAACGAG
83694434 TTCAGACTTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 24 0.38
43 39 0.62
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (43 bp):
CATCCATAACGAACCCGGACCACTCAACGAGCTCGGATGCTCA
Found at i:83697232 original size:155 final size:155
Alignment explanation
Indices: 83696950--83697267 Score: 530
Period size: 155 Copynumber: 2.1 Consensus size: 155
83696940 AGAAGATGAG
* *
83696950 GAACCAGATTGGTGAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTCGGCAACAGGAGAAGA
1 GAACCAGATCGGTGAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACAGGAGAAGA
* * * *
83697015 GATGACTGGTTGAAAATTGGGGAATTGACAGTATCTGGGGCTACCATCATGGGAAGTCGAGACTT
66 GATGACTGGTTGAAAATTAGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTT
83697080 GTGATGAATAGAGTTGGTTCAGCCA
131 GTGATGAATAGAGTTGGTTCAGCCA
* * *
83697105 GAACCAGATCGGTGAGTAGGAGACCGTAGGCCAAAAGGATGGAGTGACTAGGCAAC-GTGAGAAT
1 GAACCAGATCGGTGAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACAG-GAGAAG
83697169 AGATGACTGGTTGAAAATTAGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACT
65 AGATGACTGGTTGAAAATTAGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACT
*
83697234 TGTGATGAATAGAGTTGGTTGAGCCA
130 TGTGATGAATAGAGTTGGTTCAGCCA
83697260 GAACCAGA
1 GAACCAGA
83697268 ATTTAATAAG
Statistics
Matches: 152, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
154 1 0.01
155 151 0.99
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19
Consensus pattern (155 bp):
GAACCAGATCGGTGAGTAGGAGACCGTAGACCAAAAGGATGGAGCGACTAGGCAACAGGAGAAGA
GATGACTGGTTGAAAATTAGGGAATTGACAGTATCTGGGGCGACCACCATGGGAAGCCGAGACTT
GTGATGAATAGAGTTGGTTCAGCCA
Found at i:83702401 original size:48 final size:49
Alignment explanation
Indices: 83702234--83702548 Score: 221
Period size: 48 Copynumber: 6.6 Consensus size: 49
83702224 GCATAGTGCT
* * * * * *
83702234 GATGCCATGTACCAGACATGGTCTTACACTGAC-TATCGAAATCGAGGCC
1 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATATC-ATGCC
* * * * *
83702283 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTC-TCACATATCCGTGCG
1 GATGCCATGTCCCAGACATAGTCTTACACTGA-CACATC-TATAT-CATGCC
83702333 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATAT-ATGCC
1 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATATCATGCC
* **
83702381 GATGCCATGTCCTAGACATAGTCTTACACTGACACATCT-CGT-A-GCC
1 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATATCATGCC
* * ** * *
83702427 GAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTA-C-ATCTCGAGGCC
1 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATATC-ATGCC
* * * * *
83702473 GATG-TATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCGTCTCAATGTC
1 GATGCCATGTCCCAGACATAGTCTTACACTGACACATCT-ATATC-ATGCC
*
83702519 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATAGTCTTACACT
83702549 AGCTCTCATA
Statistics
Matches: 219, Mismatches: 31, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.01
44 14 0.06
45 14 0.06
46 46 0.21
47 15 0.07
48 52 0.24
49 32 0.15
50 40 0.18
51 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATAGTCTTACACTGACACATCTATATCATGCC
Found at i:83702466 original size:46 final size:50
Alignment explanation
Indices: 83702280--83702597 Score: 266
Period size: 46 Copynumber: 6.7 Consensus size: 50
83702270 CGAAATCGAG
* *
83702280 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG--T
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCT-ACATCT-CGTAT
* * **
83702330 GCGGATGCCATGTCCCAGACATAGTCTTACACT-G-AC-ACATCTATATAT
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACATCT-CGTAT
* *
83702378 GCCGATGCCATGTCCTAGACATAGTCTTACACT-G-AC-ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACATCTCGTAT
* * *
83702424 GCCGAT-ACATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AG
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACATCTCGTAT
* * *
83702470 GCCGATG-TATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTC-AAT
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACATCTCGTAT
* * * *
83702516 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GT-G
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACAT-CTCGTAT
* *
83702564 GTCGAT-ACATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGC
83702598 ACATAAATAA
Statistics
Matches: 230, Mismatches: 25, Indels: 30
0.81 0.09 0.11
Matches are distributed among these distances:
44 10 0.04
45 15 0.07
46 76 0.33
47 30 0.13
48 66 0.29
49 2 0.01
50 31 0.13
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTACATCTCGTAT
Found at i:83702547 original size:94 final size:93
Alignment explanation
Indices: 83702229--83702597 Score: 319
Period size: 94 Copynumber: 3.9 Consensus size: 93
83702219 ATAGGGCATA
* *
83702229 GTGCTGATGCCATGTACCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCATGTC
1 GTGC-GATGCCATGTCCCAGACATGGTCTTACACTGACTA-C-ATATCGAGGCCGATGCCATGTC
* *
83702294 CCAGACATGGTCTTACACTAGCTCTCACATATCC
63 CCAGACATAGTCTTACACTAGCTCT--CATCT-C
* ** *
83702328 GTGCGGATGCCATGTCCCAGACATAGTCTTACACTGAC-ACATCTATATATGCCGATGCCATGTC
1 GTGC-GATGCCATGTCCCAGACATGGTCTTACACTGACTACA--TATCGAGGCCGATGCCATGTC
* * *
83702392 CTAGACATAGTCTTACACT-G-ACACATCTC
63 CCAGACATAGTCTTACACTAGCTCTCATCTC
* * * *
83702421 GTAGCCGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATG-TATGTC
1 GT-G-CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TACATATCGAGGCCGATGCCATGTC
*
83702483 CCAGACAT-GTCTTACACTAGCTCTCGTCTC
63 CCAGACATAGTCTTACACTAGCTCTCATCTC
* * * * *
83702513 AATGTCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATAAT-GTGGTCGAT-ACATG
1 -GTG-CGATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ACAT-ATCGAGGCCGATGCCATG
83702575 TCCCAGACAT-GTCTTACACTAGC
61 TCCCAGACATAGTCTTACACTAGC
83702598 ACATAAATAA
Statistics
Matches: 223, Mismatches: 32, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
90 10 0.04
91 13 0.06
92 33 0.15
93 33 0.15
94 58 0.26
95 2 0.01
96 2 0.01
97 2 0.01
98 35 0.16
99 35 0.16
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
GTGCGATGCCATGTCCCAGACATGGTCTTACACTGACTACATATCGAGGCCGATGCCATGTCCCA
GACATAGTCTTACACTAGCTCTCATCTC
Found at i:83702552 original size:48 final size:47
Alignment explanation
Indices: 83702234--83702597 Score: 259
Period size: 46 Copynumber: 7.7 Consensus size: 47
83702224 GCATAGTGCT
* * * * *
83702234 GATGCCATGTACCAGACATGGTCTTACACT-GACTATCGAAATCGAGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCTC-ATATCAATGCC
** *
83702283 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCG
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCT--CATATCAATGCC
*
83702333 GATGCCATGTCCCAGACATAGTCTTACACT-GACACATC-TAT-ATATGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CTC-TCATATCA-ATGCC
* * * * *
83702381 GATGCCATGTCCTAGACATAGTCTTACACT-G-ACACATCTC-GTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATATCAAT-GCC
* * * * *
83702427 GAT-ACATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATATCAATGCC
* * * *
83702473 GATG-TATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCC
* *
83702519 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--ATGTGGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATATCA-AT-GCC
*
83702567 GAT-ACATGTCCCAGACATGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC
83702598 ACATAAATAA
Statistics
Matches: 263, Mismatches: 33, Indels: 41
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.04
45 16 0.06
46 74 0.28
47 29 0.11
48 60 0.23
49 34 0.13
50 38 0.14
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCC
Found at i:83705635 original size:245 final size:245
Alignment explanation
Indices: 83705199--83705686 Score: 701
Period size: 245 Copynumber: 2.0 Consensus size: 245
83705189 CTGCTAGTAG
* *
83705199 TAATCGTATTCCAATTATTACTATCGGTTATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
1 TAATCATATTCCAATTATTACTATCGGTGATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
* * *
83705264 TTGCCCTTGATTTATCAACTAATCTACTTTCCATTGGACAACTAGTAGAGGATAATTGCAAAGTT
66 TTGCCCTAGATTTATCAACTAATCTACTTTCCATTAGACAACTAGTAAAGGATAATTGCAAAGTT
* * * * *
83705329 ACCTTTTATTCTTCTGGTTGTGTTATACAGGAACTGGAATCAGGGAAGATAGTAGTTGAGGGACC
131 ACCTTTTATTCTTATGGTTATGTTATACAAGAACTAGAATCAGGGAAGACAGTAGTTGAGGGACC
* *
83705394 TAAATGGGGTAGGCTCTTTCCTCTCCATTTTAATGAATCAGCCAAGCCTT
196 TAAATGGGGCAGACTCTTTCCTCTCCATTTTAATGAATCAGCCAAGCCTT
* *
83705444 TAATCATATTCCAATTATTGCTATTGGTGATATTTCTT-CTTCTCCATCTATGAAAAATGTCTTC
1 TAATCATATTCCAATTATTACTATCGGTGATATTTCTTCCTT-TCCATCTATGAAAAATGTCTTC
*** * *
83705508 ATTGCCCCTAG-TTTATTTGCTAATCTACTTTCCATTAGACAACTGGTAAATGATAATTGCAAAG
65 ATTG-CCCTAGATTTATCAACTAATCTACTTTCCATTAGACAACTAGTAAAGGATAATTGCAAAG
* * * * **
83705572 TTACCTTTTCTTCTTATGGTTATGTTGTGCAAGAGCTAGCGTCAGGGAAGACAGTAGTTGAGGGA
129 TTACCTTTTATTCTTATGGTTATGTTATACAAGAACTAGAATCAGGGAAGACAGTAGTTGAGGGA
* *
83705637 CCTAAATGGGGCAGACTCTTTCCTCTCTATTTTAATGAATTAGCCAAGCC
194 CCTAAATGGGGCAGACTCTTTCCTCTCCATTTTAATGAATCAGCCAAGCC
83705687 CATAAATGTG
Statistics
Matches: 214, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
244 3 0.01
245 206 0.96
246 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (245 bp):
TAATCATATTCCAATTATTACTATCGGTGATATTTCTTCCTTTCCATCTATGAAAAATGTCTTCA
TTGCCCTAGATTTATCAACTAATCTACTTTCCATTAGACAACTAGTAAAGGATAATTGCAAAGTT
ACCTTTTATTCTTATGGTTATGTTATACAAGAACTAGAATCAGGGAAGACAGTAGTTGAGGGACC
TAAATGGGGCAGACTCTTTCCTCTCCATTTTAATGAATCAGCCAAGCCTT
Found at i:83707339 original size:16 final size:16
Alignment explanation
Indices: 83707318--83707352 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
83707308 CAAATCCTAC
*
83707318 AATGCCGAAAAGTCGA
1 AATGCCGAAAAGCCGA
83707334 AATGCCGAAAAGCCGA
1 AATGCCGAAAAGCCGA
83707350 AAT
1 AAT
83707353 TTCAGCTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.23, T:0.11
Consensus pattern (16 bp):
AATGCCGAAAAGCCGA
Found at i:83707645 original size:28 final size:29
Alignment explanation
Indices: 83707563--83707651 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 29
83707553 AAAGCATGAC
*
83707563 TATGAATGTGATTTGGGCCTAATGGTCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
83707592 TACGAATGTGATTTGGGCCTAATGGGGCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
83707621 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
83707649 TAT
1 TAT
83707652 ACATGTATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:83712801 original size:49 final size:50
Alignment explanation
Indices: 83712636--83712862 Score: 314
Period size: 49 Copynumber: 4.5 Consensus size: 50
83712626 TGGATACCCG
* * * * * * *
83712636 GTGGCCTGCACATAGTACCACCCTTATAGTCAAAGCTACCTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACCAAGCTATCTTCTTCACAAA
*
83712687 GTAGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TTCTTCACAAA
*
83712739 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
* *
83712788 GTGGCCTTCACATAGTACCACACTTGTCACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
83712837 GTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
83712863 AGTCACTAGT
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
49 83 0.51
50 2 0.01
51 38 0.23
52 40 0.25
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
Found at i:83716857 original size:27 final size:27
Alignment explanation
Indices: 83716841--83716996 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
83716831 TGATTTGTAG
* * *
83716841 AATTACCATTTTACCCTAGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* *
83716868 AATTACCGTTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *
83716895 AATTACCGTTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * *
83716922 AATTATCGTTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
83716949 AATTACCATTTTACCCTC-AGTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
83716975 AATTACCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
83716997 GTGAAATTAC
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 25 0.22
27 91 0.78
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:83717086 original size:54 final size:53
Alignment explanation
Indices: 83716995--83717175 Score: 159
Period size: 54 Copynumber: 3.4 Consensus size: 53
83716985 TTACCCTCGA
* ** *
83716995 TTGTGAAATTACTAAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGTTTG-TAAAATTACCAAAATACCCCT-GT
* * * *
83717049 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCGAAATACCACTGGT
1 TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-GT
* * * * *
83717103 TTGTGAAATTACTGAAATA-CCCTCAATTTGTAACACTACCAAAATACCCCTGAT
1 TTGTAAAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTG-T
** *
83717157 TTACAAAATTACAAAAATA
1 TTGTAAAATTACTAAAATA
83717176 ACCTTGACTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
53 5 0.05
54 93 0.92
55 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGT
Found at i:83717158 original size:27 final size:26
Alignment explanation
Indices: 83716995--83717175 Score: 137
Period size: 27 Copynumber: 6.7 Consensus size: 26
83716985 TTACCCTCGA
* * *
83716995 TTGTGAAATTACTAAAATACCCCTGT
1 TTGTAAAATTACCAAAATACCCCTAT
** *
83717021 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTA-T
83717049 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTA-T
* * * *
83717076 TTGTAAAATTATCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCT-AT
* ** *
83717103 TTGTGAAATTACTGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCC-CTAT
* *
83717130 TTGTAACACTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCT-AT
** *
83717157 TTACAAAATTACAAAAATA
1 TTGTAAAATTACCAAAATA
83717176 ACCTTGACTT
Statistics
Matches: 120, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 115 0.96
28 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCTAT
Found at i:83717241 original size:27 final size:27
Alignment explanation
Indices: 83717144--83717241 Score: 65
Period size: 27 Copynumber: 3.6 Consensus size: 27
83717134 AACACTACCA
* * **
83717144 AAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGGTTTACAAAATTACTG
* *
83717171 AAATAACCTTGACTTT-CTAAAAATTA-TAG
1 AAATACCCTTG-GTTTAC--AAAATTACT-G
* * *
83717200 AAATATCATTAGTTTACAAAATTACTG
1 AAATACCCTTGGTTTACAAAATTACTG
83717227 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
83717242 GTAGATTTAC
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
27 30 0.57
28 7 0.13
29 16 0.30
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTACTG
Found at i:83717253 original size:110 final size:108
Alignment explanation
Indices: 83717025--83717255 Score: 241
Period size: 110 Copynumber: 2.1 Consensus size: 108
83717015 CCCTGTAGGA
** * * * * *
83717025 TAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCG
1 TAGAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAATAACCCTACTTTCTAAAATTATAG
* ***
83717090 AAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTG
66 AAATACCACTAGTTTACAAAATTACTGAAATACCCTCAATTTG
* *
83717133 TA-ACACTACCAAAATACCCCT-GATTTACAAAATTACAAAAATAACCTTGACTTTCTAAAAATT
1 TAGA-ATTACCAAAATACCCCTAG-TTTACAAAATTACAAAAATAACCCT-ACTTTCT-AAAATT
* * ***
83717196 ATAGAAATATCATTAGTTTACAAAATTACTGAAATACCCTTGGTTTG
62 ATAGAAATACCACTAGTTTACAAAATTACTGAAATACCCTCAATTTG
*
83717243 TAGATTTACCAAA
1 TAGAATTACCAAA
83717256 CACCCTTGTA
Statistics
Matches: 98, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
107 2 0.02
108 38 0.39
109 5 0.05
110 52 0.53
111 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (108 bp):
TAGAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAATAACCCTACTTTCTAAAATTATAG
AAATACCACTAGTTTACAAAATTACTGAAATACCCTCAATTTG
Found at i:83717335 original size:27 final size:27
Alignment explanation
Indices: 83717281--83717358 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
83717271 AAATGACTAA
* * *
83717281 AATACCCCTAATA-GGTAAAAAGATCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
83717308 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
83717335 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
83717359 GAATATGCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:83718203 original size:25 final size:25
Alignment explanation
Indices: 83718165--83718234 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
83718155 AGGAAGTGCT
* *
83718165 AAAAGGGCTATGCCCCAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
83718190 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
83718215 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
83718235 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:83718247 original size:24 final size:24
Alignment explanation
Indices: 83718164--83718259 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
83718154 GAGGAAGTGC
83718164 TAAAAGGGCTATGCCCCAGTTTACT
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
83718189 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
83718213 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
83718237 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
83718260 ATATGATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
23 5 0.08
24 12 0.20
25 43 0.70
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:83718258 original size:50 final size:50
Alignment explanation
Indices: 83718165--83718259 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
83718155 AGGAAGTGCT
**
83718165 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
* *
83718215 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAG-GGCTAGGCC-CCAGTT
83718260 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 6 0.15
49 10 0.26
50 23 0.59
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:83720528 original size:26 final size:27
Alignment explanation
Indices: 83720485--83720625 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
83720475 TTACTAAATG
** * *
83720485 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
83720512 CCCTCGATTTA-TAAATTA-CGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTA
83720537 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
83720564 CCCTC-ATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
83720590 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
83720617 CCCTCGATT
1 CCCTCGATT
83720626 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
25 16 0.16
26 37 0.37
27 47 0.47
28 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:83720555 original size:52 final size:54
Alignment explanation
Indices: 83720485--83720625 Score: 182
Period size: 52 Copynumber: 2.7 Consensus size: 54
83720475 TTACTAAATG
** * * * *
83720485 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTA-TAAATTA-CGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTCA
*
83720537 CCCTCGATTTACAAAATTACCGTTTTACCCTC-ATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTCA
83720590 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATT
83720626 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
51 5 0.06
52 35 0.45
53 35 0.45
54 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTCA
Found at i:83720672 original size:26 final size:26
Alignment explanation
Indices: 83720629--83720777 Score: 97
Period size: 27 Copynumber: 5.7 Consensus size: 26
83720619 CTCGATTGTG
*
83720629 AAATTA-CTAAATACCCCT-GTAGGATA
1 AAATTACCAAAATA-CCCTAGTAGG-TA
* **
83720655 GAATTACCAAAATACCCTAGTTTGTA
1 AAATTACCAAAATACCCTAGTAGGTA
**
83720681 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTAGTAGGTA
* * ** *
83720708 AAATTACCGAAATACCACTGGTTTGTG
1 AAATTACCAAAATACC-CTAGTAGGTA
* * **
83720735 AAATTACCGAAATACCCTCAAT-TTTA
1 AAATTACCAAAATACCCT-AGTAGGTA
83720761 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
83720778 CTGATTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 46 0.44
27 59 0.56
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTACCAAAATACCCTAGTAGGTA
Found at i:83720707 original size:27 final size:27
Alignment explanation
Indices: 83720656--83720804 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
83720646 TGTAGGATAG
83720656 AATTACCAAAATA-CCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
83720682 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
83720709 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
83720736 AATTACCGAAATA-CCCTCAATTT-TAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
83720762 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
83720789 AATTACAAAAATACCC
1 AATTACCAAAATACCC
83720805 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
26 33 0.31
27 73 0.69
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:83720791 original size:80 final size:80
Alignment explanation
Indices: 83720656--83720803 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
83720646 TGTAGGATAG
* ** **
83720656 AATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAAT
1 AATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAAT
83720721 ACCACTGGTTTGTGA
66 ACCACTGGTTTGTGA
*
83720736 AATTACCGAAATACCCTCAATTT-TAAAATTACCAAAATACCCCT-GATTTACAAAATTACAAAA
1 AATTACCAAAATACCCT-AATTTGTAAAATTACCAAAATACCCCTAG-TTTACAAAATTACAAAA
83720799 ATACC
64 ATACC
83720804 CTTGACTTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
79 1 0.02
80 55 0.92
81 4 0.07
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (80 bp):
AATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACAAAAAT
ACCACTGGTTTGTGA
Found at i:83720805 original size:53 final size:55
Alignment explanation
Indices: 83720656--83720805 Score: 175
Period size: 53 Copynumber: 2.8 Consensus size: 55
83720646 TGTAGGATAG
*
83720656 AATTACCAAAATA-CCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTCTAATTTGTAA
* * * * *
83720709 AATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTC-AATTT-TAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCTAATTTGTAA
** *
83720762 AATTACCAAAATACCCCTGATTTACAAAATTACAAAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCT
83720806 TGACTTTCTA
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 51 0.64
54 28 0.35
55 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (55 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCTAATTTGTAA
Found at i:83720855 original size:27 final size:27
Alignment explanation
Indices: 83720816--83720867 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
83720806 TGACTTTCTA
83720816 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
83720843 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
83720868 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:83721823 original size:25 final size:25
Alignment explanation
Indices: 83721785--83721854 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
83721775 AGGAAGTGCT
* *
83721785 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
83721810 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
83721835 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
83721855 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:83721867 original size:24 final size:24
Alignment explanation
Indices: 83721784--83721879 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
83721774 GAGGAAGTGC
*
83721784 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
83721809 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
83721833 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
83721857 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
83721880 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:83721878 original size:50 final size:50
Alignment explanation
Indices: 83721785--83721879 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
83721775 AGGAAGTGCT
**
83721785 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
83721835 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
83721880 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:83722109 original size:31 final size:31
Alignment explanation
Indices: 83722071--83722147 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
83722061 CGTTGACAGT
*
83722071 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
83722102 AAAGGCTTCGGCCCAGTGGTATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
83722133 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
83722148 TTATATGTCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:83724415 original size:27 final size:27
Alignment explanation
Indices: 83724385--83724528 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
83724375 TACTAAAATG
**
83724385 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
83724412 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
83724439 CCCTCGATTTACAAAATTACCCTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
83724466 CCGTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
*
83724493 CCCTC-AGTTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
83724520 CCCTCGATT
1 CCCTCGATT
83724529 GTGAAATGAC
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:83724593 original size:27 final size:27
Alignment explanation
Indices: 83724560--83724682 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
83724550 TGTCGGATAG
83724560 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
* *
83724587 AACTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
* * * *
83724614 AATTACCGAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCACTAGTTTGTAA
*
83724641 AATTACCAAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCACT-AGTTTGTAA
83724668 AATTACCAAAATACC
1 AATTACCAAAATACC
83724683 CCTGATTTAC
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 81 0.99
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCACTAGTTTGTAA
Found at i:83724603 original size:54 final size:54
Alignment explanation
Indices: 83724541--83724682 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 54
83724531 GAAATGACTG
*
83724541 AAATACCCCT-GTCGGATAGAATTACCAAAATACCACTAGTTTGTAAAACTACCA
1 AAATACCCCTAGTCGG-TAAAATTACCAAAATACCACTAGTTTGTAAAACTACCA
** * * * * *
83724595 AAATACCCCTAGTTTGTAAAATTACCGAAATACCATTGGTTTGTGAAATTACCA
1 AAATACCCCTAGTCGGTAAAATTACCAAAATACCACTAGTTTGTAAAACTACCA
* **
83724649 AAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 AAATACCCCT-AGTCGGTAAAATTACCAAAATACC
83724683 CCTGATTTAC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 4 0.05
54 69 0.91
55 3 0.04
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (54 bp):
AAATACCCCTAGTCGGTAAAATTACCAAAATACCACTAGTTTGTAAAACTACCA
Found at i:83724651 original size:81 final size:81
Alignment explanation
Indices: 83724560--83724709 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
83724550 TGTCGGATAG
* ** *
83724560 AATTACCAAAATACCACT-AGTTTGTAAAACTACCAAAATACCCCT-AGTTTGTAAAATTACCGA
1 AATTACCAAAATACC-CTCAATTTGTAAAACTACCAAAATACCCCTGA-TTTACAAAATTACAGA
83724623 AATACCATTGGTTTGTGA
64 AATACCATTGGTTTGTGA
*
83724641 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCCTGATTTACAAAATTACAGAAA
83724706 TACC
66 TACC
83724710 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 2 0.03
81 59 0.95
82 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAACTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCATTGGTTTGTGA
Found at i:83724690 original size:27 final size:28
Alignment explanation
Indices: 83724560--83724793 Score: 162
Period size: 27 Copynumber: 8.6 Consensus size: 28
83724550 TGTCGGATAG
*
83724560 AATTACCAAAATACCACT-AGTTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGTAA
*
83724587 AACTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGTAA
* ** *
83724614 AATTACCGAAATACCATTG-GTTTGTGA
1 AATTACCAAAATACCCCTGAGTTTGTAA
* *
83724641 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGAGTTTGTAA
**
83724668 AATTACCAAAATACCCCTGA-TTTACAA
1 AATTACCAAAATACCCCTGAGTTTGTAA
* * *
83724695 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCCTGAGTTTGT-AA
* ** **
83724724 AATTA-TAGAAATACCATTG-GTTTACAA
1 AATTACCA-AAATACCCCTGAGTTTGTAA
** * *
83724751 AATTACTGAAATACCCTTG-GTTTGTAG
1 AATTACCAAAATACCCCTGAGTTTGTAA
* *
83724778 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
83724794 TTGTAGGATG
Statistics
Matches: 167, Mismatches: 33, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.02
27 132 0.79
28 12 0.07
29 19 0.11
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
AATTACCAAAATACCCCTGAGTTTGTAA
Found at i:83724874 original size:25 final size:25
Alignment explanation
Indices: 83724846--83724895 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
83724836 ACCGTAAAGC
*
83724846 CCCTT-TAGGGTAAAGTGACGTAATA
1 CCCTTGTAGGGTAAAATGACG-AATA
*
83724871 CCCTTGTATGGTAAAATGACGAATA
1 CCCTTGTAGGGTAAAATGACGAATA
83724896 TGCCCTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (25 bp):
CCCTTGTAGGGTAAAATGACGAATA
Found at i:83725771 original size:24 final size:25
Alignment explanation
Indices: 83725695--83725764 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
83725685 GAGAAGTGCT
* * *
83725695 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
83725720 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
83725745 AAAAGGGCTTTGCCCGAGTT
1 AAAAGGGCTTTGCCCCAGTT
83725765 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:83725777 original size:24 final size:25
Alignment explanation
Indices: 83725695--83725777 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
83725685 GAGAAGTGCT
* *
83725695 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
83725719 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
83725744 AAAA-AGGGCTTTGCCCGAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
83725768 AAAAGAGGCT
1 AAAAGAGGCT
83725778 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:83726019 original size:31 final size:31
Alignment explanation
Indices: 83725984--83726067 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
83725974 CATTTACAGT
83725984 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
83726015 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
83726046 AAAGGCTTTGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
83726068 TCAAGACTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:83744741 original size:19 final size:20
Alignment explanation
Indices: 83744706--83744745 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
83744696 TGCATTCCAT
*
83744706 AACTCAAGATAACATAAAAA
1 AACTCAAGATAAAATAAAAA
83744726 AACTCAA-ATAAAATAAAAA
1 AACTCAAGATAAAATAAAAA
83744745 A
1 A
83744746 TAATGTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15
Consensus pattern (20 bp):
AACTCAAGATAAAATAAAAA
Found at i:83749061 original size:61 final size:61
Alignment explanation
Indices: 83748964--83749085 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
83748954 AGTAAAGCAC
* *
83748964 TCATTCATAATTTGGAAGAAGGTACCATGATCCTTACATCCAGGTATTTGAGATGTAAGTA
1 TCATTCATAATTTGGAAGAAGGTACCATGATACTTACATCCAGGTATTTGAGATGCAAGTA
83749025 TCATTCATAATTTGGAAGAAGGTACCATGATACTTACATCCAGGTATTTGAGATGCAAGTA
1 TCATTCATAATTTGGAAGAAGGTACCATGATACTTACATCCAGGTATTTGAGATGCAAGTA
83749086 AACTCTGACT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (61 bp):
TCATTCATAATTTGGAAGAAGGTACCATGATACTTACATCCAGGTATTTGAGATGCAAGTA
Found at i:83760186 original size:29 final size:29
Alignment explanation
Indices: 83760153--83760254 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
83760143 TGACGAGATC
83760153 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
83760182 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
83760211 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
83760240 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
83760255 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:83762162 original size:506 final size:506
Alignment explanation
Indices: 83761204--83762211 Score: 1863
Period size: 506 Copynumber: 2.0 Consensus size: 506
83761194 AGCAGTATAC
* *
83761204 TGAGAAATATTAAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGGTCCCCTGTCGCGACTTT
1 TGAGAAATATTAAAGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGGACCCCTGTCGCGACTTT
* *
83761269 GAAAATTTACCATAAATTATCCAGAAAGAATTAGGAGTCATTCCTTATTTGTACAGATTCCATTT
66 GAAAATTTACCATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATGTACAGATTCCATTT
*
83761334 TGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATTAAAGCCCTGTACAGAGAGATATTCAAG
131 TGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATTAAAGCCCTGTACAGAGAGATATCCAAG
* *
83761399 TTATAACGCGCGAAGGTCAGAGCAGTCGGTCCCTGTAACATGGGTGACTTTAACTAATAAACTGT
196 TTATAACGCACGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGT
83761464 ACCAATTGGCCCAACCAAAAATTCTAAAAATAAATCCATGGATGGGTATATGAGTCTAAATTCAG
261 ACCAATTGGCCCAACCAAAAATTCTAAAAATAAATCCATGGATGGGTATATGAGTCTAAATTCAG
*
83761529 GGAAAATTTACGAAATCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGA
326 GGAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGA
* *
83761594 TGCAGTTTTCCAGCCTGACTGGTAATGTCAAATTGGTTGGTATCTTGAGAGGGTTTGGCCGTTAA
391 CGCAGTTTTCCAGCCTGACTGGTAATGTCAAATTGGTTGGTATCTTGAGAGGATTTGGCCGTTAA
83761659 CCCCTCGTGTCCGACACCAGCGTCGGTCACGAGTTAGGGGTGTTACAATAT
456 CCCCTCGTGTCCGACACCAGCGTCGGTCACGAGTTAGGGGTGTTACAATAT
*
83761710 TGAGAGATATTAAAGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGGACCCCTGTCGCGACTTT
1 TGAGAAATATTAAAGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGGACCCCTGTCGCGACTTT
*
83761775 GAAAATTTTCCATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATGTACAGATTCCATTT
66 GAAAATTTACCATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATGTACAGATTCCATTT
83761840 TGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATTAAAGCCCTGTACAGAGAGATATCCAAG
131 TGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATTAAAGCCCTGTACAGAGAGATATCCAAG
* * *
83761905 TTGTAACGCATGAAGGTCAGAGCAGTCGATCCCTGTAATATGGGTGACTTTAACTAATAAACTGT
196 TTATAACGCACGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGT
83761970 ACCAATTGGCCCAACCAAAAATTCTAAAAATAAATCCATGGATGGGTATATGAGTCTAAATTCAG
261 ACCAATTGGCCCAACCAAAAATTCTAAAAATAAATCCATGGATGGGTATATGAGTCTAAATTCAG
83762035 GGAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGA
326 GGAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGA
83762100 CGCAGTTTTCCAGCCTGACTGGTAATGTCAAATTGGTTGGTATCTTGAGAGGATTTGGCCGTTAA
391 CGCAGTTTTCCAGCCTGACTGGTAATGTCAAATTGGTTGGTATCTTGAGAGGATTTGGCCGTTAA
* *
83762165 CCTCTCGTGTCCGACACCGGCGTCGGTCACGAGTTAGGGGTGTTACA
456 CCCCTCGTGTCCGACACCAGCGTCGGTCACGAGTTAGGGGTGTTACA
83762212 CCTGTTGAGT
Statistics
Matches: 485, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
506 485 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (506 bp):
TGAGAAATATTAAAGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGGACCCCTGTCGCGACTTT
GAAAATTTACCATAAATTATCCAGAAAGAATTAGGAGTCATGCCTTATATGTACAGATTCCATTT
TGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATTAAAGCCCTGTACAGAGAGATATCCAAG
TTATAACGCACGAAGGTCAGAGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGT
ACCAATTGGCCCAACCAAAAATTCTAAAAATAAATCCATGGATGGGTATATGAGTCTAAATTCAG
GGAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGA
CGCAGTTTTCCAGCCTGACTGGTAATGTCAAATTGGTTGGTATCTTGAGAGGATTTGGCCGTTAA
CCCCTCGTGTCCGACACCAGCGTCGGTCACGAGTTAGGGGTGTTACAATAT
Found at i:83774498 original size:122 final size:119
Alignment explanation
Indices: 83774299--83774521 Score: 306
Period size: 122 Copynumber: 1.8 Consensus size: 119
83774289 CACAATAACA
* *
83774299 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCTAATCTCAATTTAACACAGAATGTA
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTTTCCTAATCTCAATTTAACACAGAATGTA
*
83774364 TTATAACTAACCT-AGAAATGCAAATTAAATGATAGACATTGGTATGGTAATAGC
66 TGATAACTAACCTAAG-AATGCAAATTAAATGATAGACATTGGTATGGTAATAGC
* * * ** *
83774418 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACA-TGAAA
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGT-TTCCTAAT--CTCAATTTAACACAG-AA
83774482 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
62 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
83774522 AAAATGAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
119 32 0.36
120 7 0.08
121 1 0.01
122 48 0.53
123 2 0.02
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.30
Consensus pattern (119 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTTTCCTAATCTCAATTTAACACAGAATGTA
TGATAACTAACCTAAGAATGCAAATTAAATGATAGACATTGGTATGGTAATAGC
Found at i:83786997 original size:13 final size:13
Alignment explanation
Indices: 83786979--83787004 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83786969 GTTGTTTATT
83786979 AACTAATTAACTA
1 AACTAATTAACTA
83786992 AACTAATTAACTA
1 AACTAATTAACTA
83787005 GCTAAACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
AACTAATTAACTA
Found at i:83788645 original size:38 final size:37
Alignment explanation
Indices: 83788596--83788753 Score: 190
Period size: 38 Copynumber: 4.1 Consensus size: 37
83788586 TTTAAACTCA
*
83788596 GATATAATACCAGCAGTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCA-TAAGCCTGCGGGATTTAACCCG
* * *
83788634 GATATAATACCAGCACGAAGCCTACGGGATTTAACTCG
1 GATATAATACCAGCA-TAAGCCTGCGGGATTTAACCCG
* *
83788672 AATATAATACCAACATGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCAT-AAGCCTGCGGGATTTAACCCG
* *
83788710 GATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCATA-AGCCTGCGGG-ATTTAA-CCCG
83788750 GATA
1 GATA
83788754 CACATCAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 88 0.86
39 5 0.05
40 8 0.08
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (37 bp):
GATATAATACCAGCATAAGCCTGCGGGATTTAACCCG
Found at i:83788732 original size:76 final size:78
Alignment explanation
Indices: 83788564--83788724 Score: 231
Period size: 76 Copynumber: 2.1 Consensus size: 78
83788554 TCGAACTAAC
* * * *
83788564 ACCAGCACGGAGCTTACGGGACTTTAAACTCAGATATAATACCAGCAGTAGGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAACAGTAAGCCTGCGGGATTTA
83788629 ACCCGGATATAAT
66 ACCCGGATATAAT
83788642 ACCAGCACGAAGCCTACGGGA-TTT-AACTC-GAATATAATACCAACA-TGAAGCCTGCGGGATT
1 ACCAGCACGAAGCCTACGGGACTTTAAACTCAG-ATATAATACCAACAGT-AAGCCTGCGGGATT
83788703 TAACCCGGATATAAT
64 TAACCCGGATATAAT
*
83788718 TCCAGCA
1 ACCAGCA
83788725 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
75 2 0.03
76 52 0.68
77 3 0.04
78 19 0.25
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (78 bp):
ACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAACAGTAAGCCTGCGGGATTTA
ACCCGGATATAAT
Found at i:83791103 original size:40 final size:40
Alignment explanation
Indices: 83791048--83791257 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83791038 AACATTGGAA
83791048 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83791088 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83791128 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83791168 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83791207 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83791248 CTATATCCGG
1 ATATATCCGG
83791258 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83799143 original size:40 final size:40
Alignment explanation
Indices: 83799088--83799297 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83799078 AACATTGGAA
83799088 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83799128 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83799168 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83799208 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83799247 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83799288 CTATATCCGG
1 ATATATCCGG
83799298 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83801228 original size:2 final size:2
Alignment explanation
Indices: 83801211--83801246 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
83801201 AGCATCACTT
*
83801211 TA TA AA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83801247 TCGACTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:83804119 original size:21 final size:21
Alignment explanation
Indices: 83804093--83804137 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
83804083 AACGGATCGA
* *
83804093 ACATGGCTTGGCAATCATGTC
1 ACATGGCCTGGCAATCACGTC
83804114 ACATGGCCTGGCAATCACGTC
1 ACATGGCCTGGCAATCACGTC
83804135 ACA
1 ACA
83804138 CAGTCGCGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (21 bp):
ACATGGCCTGGCAATCACGTC
Found at i:83805481 original size:24 final size:23
Alignment explanation
Indices: 83805435--83805483 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
83805425 ATACACAGAG
*
83805435 AAAAAGCAAGAAGAAGATGCTCA
1 AAAAAGCAAGAAGAAGATACTCA
* *
83805458 AAAAGAGCGAGAAGACGATACTCA
1 AAAA-AGCAAGAAGAAGATACTCA
83805482 AA
1 AA
83805484 CCCCAACCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.55, C:0.14, G:0.22, T:0.08
Consensus pattern (23 bp):
AAAAAGCAAGAAGAAGATACTCA
Found at i:83810033 original size:13 final size:13
Alignment explanation
Indices: 83810015--83810039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83810005 TTTAAGAAAG
83810015 TTTATTTTTATTT
1 TTTATTTTTATTT
83810028 TTTATTTTTATT
1 TTTATTTTTATT
83810040 ATTAATTTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:83813678 original size:31 final size:31
Alignment explanation
Indices: 83813637--83813700 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
83813627 CCTTTTCATA
* *
83813637 TTTCATATTTCATAACACTGGGATGAAGCCT
1 TTTCAAATTTCATAACACTGGGACGAAGCCT
** *
83813668 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGACGAAGCCT
83813699 TT
1 TT
83813701 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGACGAAGCCT
Found at i:83813936 original size:25 final size:23
Alignment explanation
Indices: 83813893--83814086 Score: 228
Period size: 25 Copynumber: 8.0 Consensus size: 23
83813883 TGCTTTATCA
*
83813893 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
83813917 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
83813942 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
83813965 ATCACAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
* *
83813992 CATAATTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
83814015 ATCATAACTGGGGCATAAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
*
83814040 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
83814063 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
83814086 T
1 T
83814087 TCACTTCCTC
Statistics
Matches: 150, Mismatches: 11, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
23 49 0.33
24 24 0.16
25 76 0.51
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:83814159 original size:9 final size:9
Alignment explanation
Indices: 83814145--83814201 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
83814135 ATCTCGTGTG
83814145 CATATCATA
1 CATATCATA
*
83814154 CATATCATGTG
1 CATATCA--TA
83814165 CATATCATA
1 CATATCATA
* *
83814174 CATGTCATGTG
1 CATATCA--TA
83814185 CATATCATA
1 CATATCATA
83814194 CATATCAT
1 CATATCAT
83814202 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:83814164 original size:20 final size:20
Alignment explanation
Indices: 83814141--83814203 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
83814131 GAACATCTCG
83814141 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
83814161 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
83814181 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
83814201 TGT
1 TGT
83814204 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:83814286 original size:25 final size:25
Alignment explanation
Indices: 83814240--83814287 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
83814230 ATATATAAAC
* * * *
83814240 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
83814265 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
83814288 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:83815507 original size:27 final size:27
Alignment explanation
Indices: 83815445--83815522 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
83815435 GGGCATATTC
83815445 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
83815472 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
83815499 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
83815523 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Done.