Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 281 of 345
Found at i:83815593 original size:27 final size:27
Alignment explanation
Indices: 83815541--83815784 Score: 186
Period size: 27 Copynumber: 8.9 Consensus size: 27
83815531 TTCATCCTAC
* * * *
83815541 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** * *
83815568 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * *
83815595 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTATAAACT
* * *
83815623 CAAGGGTATTTTTGTAACTTTGTAAA-T
1 -AAGGGTATTTTGGTAATTTTATAAACT
* * *
83815650 CAGGGGTATTTTTGGTAATTTTACAAATT
1 -AAGGGTA-TTTTGGTAATTTTATAAACT
* * * *
83815679 AAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
*
83815706 AAGGGTATTTTGGTAATTTTAAAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
83815733 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
83815760 AAGGGTATTTTAGTAATTTTGTAAA
1 AAGGGTATTTTGGTAATTTTATAAA
83815785 TCGAGGGTAA
Statistics
Matches: 171, Mismatches: 40, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
27 124 0.73
28 34 0.20
29 13 0.08
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACT
Found at i:83815757 original size:81 final size:82
Alignment explanation
Indices: 83815623--83815778 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 82
83815613 TTTAGAAAGT
* * *
83815623 CAAGGGTATTTTTGTAACTTTGTAAATCAGGGGTATTTTTGGTAATTTTACAAATTAAGGGTATT
1 CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTTGGTAATTTTACAAACTAAGGGTATT
*
83815688 TCGGTAATTTCACAAAC
66 TCAGTAATTTCACAAAC
83815705 CAAGGGTATTTTGGTAA-TTT-TAAAAACTAGGGGTA-TTTTGGTAATTTTACAAACTAAGGGTA
1 CAAGGGTATTTTGGTAACTTTGT-AAAAC-AGGGGTATTTTTGGTAATTTTACAAACTAAGGGTA
*
83815767 TTTTAGTAATTT
64 TTTCAGTAATTT
83815779 TGTAAATCGA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
80 1 0.01
81 43 0.64
82 23 0.34
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTTGGTAATTTTACAAACTAAGGGTATT
TCAGTAATTTCACAAAC
Found at i:83815791 original size:27 final size:27
Alignment explanation
Indices: 83815568--83815847 Score: 170
Period size: 27 Copynumber: 10.3 Consensus size: 27
83815558 TCTACAAACT
* * *
83815568 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
83815595 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
83815624 AAGGGTATTTTTGTAACTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * * *
83815651 AGGGGTATTTTTGGTAATTTTACAAATT
1 AAGGGTA-TTTTAGTAATTTTATAAATC
** * * *
83815679 AAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
83815706 AAGGGTATTTTGGTAATTTTA-AAAAC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
83815732 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
83815759 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
83815787 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
83815814 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
83815841 GAGGGTA
1 AAGGGTA
83815848 AAACGGTAAT
Statistics
Matches: 206, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.02
27 149 0.72
28 40 0.19
29 13 0.06
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:83815848 original size:27 final size:27
Alignment explanation
Indices: 83815772--83815982 Score: 282
Period size: 27 Copynumber: 7.8 Consensus size: 27
83815762 GGGTATTTTA
* *
83815772 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
83815799 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
83815826 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
83815853 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
83815880 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
83815907 ATAATTCTGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
83815934 GTAATTATATAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
83815961 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
83815983 CTTTGGTAGT
Statistics
Matches: 163, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:83816031 original size:27 final size:27
Alignment explanation
Indices: 83815992--83816077 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
83815982 ACTTTGGTAG
* *
83815992 TTTTACAAGTCGAAAGTATTTCAGTAA
1 TTTTACAAATCGAAGGTATTTCAGTAA
* *
83816019 TTTTACAAATCGAGGGTATTTCAGTAT
1 TTTTACAAATCGAAGGTATTTCAGTAA
* *
83816046 TTTTACAAA-CTAAGGGTATTTCGGTAA
1 TTTTACAAATCGAA-GGTATTTCAGTAA
83816073 TTTTA
1 TTTTA
83816078 GTAAACTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCGAAGGTATTTCAGTAA
Found at i:83816084 original size:28 final size:27
Alignment explanation
Indices: 83816007--83816086 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
83815997 CAAGTCGAAA
*
83816007 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGG
*
83816034 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGG
* *
83816061 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
83816087 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGG
Found at i:83820658 original size:5 final size:6
Alignment explanation
Indices: 83820632--83820662 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
83820622 ATTAATCCCC
83820632 AAATTA AAATTA AAATTA AAA-TA AAATTA AA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AA
83820663 GAGGTCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
AAATTA
Found at i:83820658 original size:11 final size:12
Alignment explanation
Indices: 83820632--83820662 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
83820622 ATTAATCCCC
83820632 AAATTAAAATTA
1 AAATTAAAATTA
83820644 AAATTAAAA-TA
1 AAATTAAAATTA
83820655 AAATTAAA
1 AAATTAAA
83820663 GAGGTCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAATTAAAATTA
Found at i:83820949 original size:34 final size:34
Alignment explanation
Indices: 83820910--83820990 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
83820900 TTAGCCCCTC
*
83820910 TTTCAGTAACAGTAGCAGTCTGGGCCTAAATCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTAAACCCA
* * * * *
83820944 TTTCAGTAATAGTGGTAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTAAACCCA
83820978 TTTCAGT-ACAGTA
1 TTTCAGTAACAGTA
83820991 TGCACATAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 4 0.10
34 35 0.90
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGTCTGGGCCTAAACCCA
Found at i:83828756 original size:36 final size:34
Alignment explanation
Indices: 83828709--83828804 Score: 86
Period size: 34 Copynumber: 2.8 Consensus size: 34
83828699 TTTCAGTTAG
*
83828709 GGGCCTTAGCCCCTCCTTCAGTAACAGTAGCAGACT
1 GGGCCTGAGCCCCT--TTCAGTAACAGTAGCAGACT
* * * *
83828745 GGGCCTGAGCCCGTTTCATTAACAGTGGCAGTCT
1 GGGCCTGAGCCCCTTTCAGTAACAGTAGCAGACT
* * **
83828779 GGGACTTAGCCTATTTCAGT-ACAGTA
1 GGGCCTGAGCCCCTTTCAGTAACAGTA
83828805 TGCACACAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
33 5 0.10
34 32 0.65
36 12 0.24
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (34 bp):
GGGCCTGAGCCCCTTTCAGTAACAGTAGCAGACT
Found at i:83828796 original size:34 final size:34
Alignment explanation
Indices: 83828725--83828804 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
83828715 TAGCCCCTCC
* *
83828725 TTCAGTAACAGTAGCAGACTGGGCCTGAGCCCGT
1 TTCAGTAACAGTAGCAGACTGGGACTGAGCCCAT
* * * * *
83828759 TTCATTAACAGTGGCAGTCTGGGACTTAGCCTAT
1 TTCAGTAACAGTAGCAGACTGGGACTGAGCCCAT
83828793 TTCAGT-ACAGTA
1 TTCAGTAACAGTA
83828805 TGCACACAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
33 5 0.14
34 32 0.86
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (34 bp):
TTCAGTAACAGTAGCAGACTGGGACTGAGCCCAT
Found at i:83833621 original size:28 final size:28
Alignment explanation
Indices: 83833589--83833687 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
83833579 TGCATAAGCC
*
83833589 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
83833617 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
83833645 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
83833674 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83833688 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:83841286 original size:28 final size:28
Alignment explanation
Indices: 83841254--83841352 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
83841244 TGCATAAGCC
*
83841254 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
83841282 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
83841310 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
83841339 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83841353 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:83846934 original size:28 final size:28
Alignment explanation
Indices: 83846898--83846955 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
83846888 TAGAGGTATA
83846898 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
83846926 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
83846954 TC
1 TC
83846956 ATGATCTACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.47
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:83847663 original size:54 final size:54
Alignment explanation
Indices: 83847594--83847744 Score: 230
Period size: 54 Copynumber: 2.8 Consensus size: 54
83847584 TACCCTATAA
* * *
83847594 GGGTATTTCGATAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
83847648 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
83847702 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
83847745 CTGTAAATTG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:83847681 original size:81 final size:81
Alignment explanation
Indices: 83847592--83847751 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
83847582 TCTACCCTAT
* *
83847592 AAGGGTATTTCGA-TAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 AAGGGTATTT-GAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
*
83847656 TGGTAATTTTGTAAACC
65 TGGTAATTCTGTAAACC
* * * * * *
83847673 AAGGGTATTTTAGTAATTTTACAAACTATGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTT
1 AAGGGTATTTGAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
83847738 GGTAATTCTGTAAA
66 GGTAATTCTGTAAA
83847752 TTGAAGGTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 68 0.99
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (81 bp):
AAGGGTATTTGAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
GGTAATTCTGTAAACC
Found at i:83847751 original size:27 final size:27
Alignment explanation
Indices: 83847592--83847744 Score: 198
Period size: 27 Copynumber: 5.7 Consensus size: 27
83847582 TCTACCCTAT
* * *
83847592 AAGGGTATTTCGATAATTTTATAAACA
1 AAGGGTATTTTGGTAATTTTATAAACC
* *
83847619 AAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACC
* *
83847646 AGGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACC
* * *
83847673 AAGGGTATTTTAGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACC
* *
83847700 ATGGGTATTTTGGTGATTTTATAAACC
1 AAGGGTATTTTGGTAATTTTATAAACC
83847727 AAGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
83847745 CTGTAAATTG
Statistics
Matches: 105, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACC
Found at i:83847947 original size:27 final size:27
Alignment explanation
Indices: 83847739--83847925 Score: 243
Period size: 27 Copynumber: 6.9 Consensus size: 27
83847729 GGGTATTTTG
* * *
83847739 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAACTGAGGGTAAAACA
*
83847766 GTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAACTGAGGGTAAAACA
* *
83847793 GTAATTCTATAAA-TCGAGGGTAAAATA
1 GTAATTCTGTAAACT-GAGGGTAAAACA
* *
83847820 GTAATTCTATAAACTGAGGGGAAAACA
1 GTAATTCTGTAAACTGAGGGTAAAACA
* *
83847847 GTAATTCTGTAAA-TCGAGGATAAAATA
1 GTAATTCTGTAAACT-GAGGGTAAAACA
*
83847874 GTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAACTGAGGGTAAAACA
83847901 GTAATTCTGTAAACTGAGGGTAAAA
1 GTAATTCTGTAAACTGAGGGTAAAA
83847926 TGGTAATTTT
Statistics
Matches: 142, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 138 0.97
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAACTGAGGGTAAAACA
Found at i:83847947 original size:54 final size:54
Alignment explanation
Indices: 83847738--83847933 Score: 286
Period size: 54 Copynumber: 3.6 Consensus size: 54
83847728 AGGGTATTTT
* * **
83847738 GGTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* * *
83847792 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGGAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
* *
83847846 AGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
*
83847900 GGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATT
1 GGTAATTCTGTAAATC-GAGGGTAAAATAGTAATT
83847934 TTACAAGTCG
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
53 1 0.01
54 125 0.99
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAAC
Found at i:83849739 original size:46 final size:46
Alignment explanation
Indices: 83849672--83849839 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 46
83849662 ATCTCGTAGT
* *
83849672 CGATGCATGTCCCAAACATGTCTTACACTGA-CTTA-TGTCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAGC--ACTGTCTCGAGGC
* *
83849718 CGATGCATGTCTCAGACATGTCTTACACT-AGCACTGTCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAGCACTGTCTCGAGGC
* * * * *
83849763 CGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTCATAAT-GTGCC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGAGCACT-GT-CTCGAGGC
*
83849811 CGGTGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
83849840 AGCTCACAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 1 0.01
45 15 0.15
46 51 0.50
47 28 0.27
48 7 0.07
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGAGCACTGTCTCGAGGC
Found at i:83852618 original size:40 final size:40
Alignment explanation
Indices: 83852564--83852765 Score: 207
Period size: 40 Copynumber: 5.1 Consensus size: 40
83852554 GAATTTAACT
** * *
83852564 GGATATAGCT-ACTCGTTCAAACGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
83852604 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
83852644 GGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
83852683 -GAAATTAGTAACTCGGACAAATGCCTTC-GGATCTTAGTCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
* * *
83852723 GGATATAGTCACTTAGTACAAA-GCCTTCGGGACTTAGCCC
1 GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
83852763 GGA
1 GGA
83852766 CATCATTCGA
Statistics
Matches: 135, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.21
40 89 0.66
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:83852681 original size:79 final size:81
Alignment explanation
Indices: 83852581--83852765 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
83852571 GCTACTCGTT
* **
83852581 CAAACGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83852644 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
83852661 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCG
1 -CAAAGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83852724 GATATAGTCACTTAGTA
65 GATATAGTAACTTAGCA
83852741 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
83852766 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 5 0.06
79 57 0.66
80 20 0.23
81 5 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:83852706 original size:39 final size:40
Alignment explanation
Indices: 83852609--83852712 Score: 156
Period size: 39 Copynumber: 2.6 Consensus size: 40
83852599 AGCCCGGTTA
* *
83852609 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
* *
83852649 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
*
83852688 TAGTAACTCGGACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
83852713 ATCTTAGTCC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 33 0.57
40 25 0.43
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAAT
Found at i:83870926 original size:40 final size:40
Alignment explanation
Indices: 83870871--83871120 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
83870861 AACATTGGAA
83870871 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83870911 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83870951 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83870991 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83871031 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83871070 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83871111 CTATATCCGG
1 ATATATCCGG
83871121 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83879103 original size:40 final size:40
Alignment explanation
Indices: 83879048--83879297 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
83879038 AACATTGGAA
83879048 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83879088 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83879128 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83879168 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83879208 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83879247 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83879288 CTATATCCGG
1 ATATATCCGG
83879298 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83884159 original size:15 final size:15
Alignment explanation
Indices: 83884141--83884181 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
83884131 ACAAAAAACC
83884141 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
83884156 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
83884171 GGATAAAGAAA
1 GAATAAAGAAA
83884182 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:83884190 original size:15 final size:15
Alignment explanation
Indices: 83884143--83884190 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
83884133 AAAAAACCGA
83884143 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
83884157 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83884173 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83884188 ATA
1 ATA
83884191 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83887257 original size:93 final size:93
Alignment explanation
Indices: 83887098--83887269 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83887088 CGCCCATAAG
* *
83887098 CGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCATCCATAAGTGAATTCGGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83887163 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACAAGTTCGGATGCCTAGTTACATCTCT
* * * *
83887191 CGAACTCGGACTCAACTCAACGAGTTCGGTCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTAAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83887256 ACAAGTTCGGATGC
66 ACAAGTTCGGATGC
83887270 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTAAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCT
Found at i:83887263 original size:46 final size:46
Alignment explanation
Indices: 83887091--83887265 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
83887081 TGTAACCCGC
* * * * *
83887091 CCATAAGCGAACTCGGACTCAACTAAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGTCATTTGCAT
* * * *
83887137 CCATAAGTGAATTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG-T--C-ATTTGCAT
83887187 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGTCATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGTCATTTGCAT
* *
83887230 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
83887266 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 60 0.57
47 27 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGTCATTTGCAT
Found at i:83887285 original size:46 final size:46
Alignment explanation
Indices: 83887099--83887285 Score: 113
Period size: 46 Copynumber: 4.0 Consensus size: 46
83887089 GCCCATAAGC
* * ** * *
83887099 GAACTCGGACTCAACTAAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* *
83887145 GAATTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CTAGT
* * *
83887192 GAACTCGGACTCAACTCAACGAGTTCGGTCAT-TTGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCTAGT
*
83887238 GAACTCGGACTCAACTCAACAAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
83887284 GA
1 GA
83887286 CATGTCACTT
Statistics
Matches: 108, Mismatches: 16, Indels: 34
0.68 0.10 0.22
Matches are distributed among these distances:
44 8 0.07
45 2 0.02
46 58 0.54
47 30 0.28
49 3 0.03
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:83889709 original size:29 final size:29
Alignment explanation
Indices: 83889667--83889724 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
83889657 ATCAACAAGT
83889667 ATCATAATACACAAGTGGCATAAGTAAAA
1 ATCATAATACACAAGTGGCATAAGTAAAA
83889696 ATCATAATACACAAGTGGCATAAGTAAAA
1 ATCATAATACACAAGTGGCATAAGTAAAA
83889725 CTTACTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.21
Consensus pattern (29 bp):
ATCATAATACACAAGTGGCATAAGTAAAA
Found at i:83890063 original size:46 final size:46
Alignment explanation
Indices: 83889971--83890137 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 46
83889961 GTACCAATGC
* * *
83889971 CATGTCCCAAACATGGTCTTATACT-GAC--ACATCTCATAGCAGATG
1 CATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCA-AGCCGATG
*
83890016 CATGTCCCAGACAT-GTCTTATACTAGCTTACATCTCAAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAA-GCCGATG
* *
83890062 CATGTCCCAGACAT-GTCTTACACTAGCGCT-CATCTCAATGCCGGTG
1 CATGTCCCAGACATGGTCTTACACTAGC-TTACATCTCAA-GCCGATG
*
83890108 CCATGTCCCAGACATGGTCTTCCACTAGCT
1 -CATGTCCCAGACATGGTCTTACACTAGCT
83890138 CTCATAATGT
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 54 0.50
47 15 0.14
48 12 0.11
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAAGCCGATG
Found at i:83890142 original size:48 final size:46
Alignment explanation
Indices: 83890012--83890184 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
83890002 TCTCATAGCA
*
83890012 GATGCATGTCCCAGACATGTCTTATACTAGCT-TACATCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCC
* *
83890058 GATGCATGTCCCAGACATGTCTTACACTAGCGCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
* * * ** *
83890104 GGTGCCATGTCCCAGACATGGTCTTCCACTAGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCC
* *
83890152 GATGCATATCCTAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
83890185 ACAATAACCC
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
46 58 0.54
47 27 0.25
48 22 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
Found at i:83894677 original size:39 final size:39
Alignment explanation
Indices: 83894590--83894703 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 39
83894580 TATGGTAACC
** * *
83894590 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
83894630 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
83894669 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
83894704 TCGAACATTC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 50 0.77
40 15 0.23
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:83896611 original size:68 final size:64
Alignment explanation
Indices: 83896495--83896753 Score: 233
Period size: 68 Copynumber: 3.9 Consensus size: 64
83896485 TGGATGATAC
** * * *
83896495 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
83896559 AAG
64 --G
* *
83896562 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
83896626 CG
63 CG
* * * *
83896628 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
83896691 TACG
61 TACG
* * *
83896695 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
83896754 CGAACTATAT
Statistics
Matches: 159, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 36 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:83900742 original size:25 final size:25
Alignment explanation
Indices: 83900714--83900772 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 25
83900704 TACACTATCA
83900714 CCAAAAGAACTAATGACAGTCATAC
1 CCAAAAGAACTAATGACAGTCATAC
*
83900739 CCAAACCAAATAACTAATGACAGTCATAC
1 CC--A--AAAGAACTAATGACAGTCATAC
83900768 CCAAA
1 CCAAA
83900773 CCAATAATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
25 4 0.14
27 2 0.07
29 23 0.79
ACGTcount: A:0.49, C:0.27, G:0.08, T:0.15
Consensus pattern (25 bp):
CCAAAAGAACTAATGACAGTCATAC
Found at i:83900756 original size:29 final size:29
Alignment explanation
Indices: 83900721--83900776 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
83900711 TCACCAAAAG
83900721 AACTAATGACAGTCATACCCAAACCAAAT
1 AACTAATGACAGTCATACCCAAACCAAAT
83900750 AACTAATGACAGTCATACCCAAACCAA
1 AACTAATGACAGTCATACCCAAACCAA
83900777 TAATCTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.29, G:0.07, T:0.16
Consensus pattern (29 bp):
AACTAATGACAGTCATACCCAAACCAAAT
Found at i:83903091 original size:14 final size:14
Alignment explanation
Indices: 83903072--83903100 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83903062 CGAATAGACT
83903072 ATGAAAACATCCAA
1 ATGAAAACATCCAA
83903086 ATGAAAACATCCAA
1 ATGAAAACATCCAA
83903100 A
1 A
83903101 AACATCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.21, G:0.07, T:0.14
Consensus pattern (14 bp):
ATGAAAACATCCAA
Found at i:83909303 original size:46 final size:46
Alignment explanation
Indices: 83909236--83909410 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
83909226 TGTAACCCAC
* *
83909236 CCATAAGTGAACTCCGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGCTCGCAT
* *
83909282 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GCGCTCGCAT
* *** * *
83909328 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCG-GACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGAG-CGCTCGCAT
*
83909375 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGA
83909411 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 68 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGCTCGCAT
Found at i:83909357 original size:93 final size:92
Alignment explanation
Indices: 83909244--83909414 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 92
83909234 ACCCATAAGT
*
83909244 GAACTCCGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCCGACTCAACTCAACGAGCTCGGA-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
83909308 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTC-GATGCCTAGTTACATCTCTC
*
83909337 GAACT-CGAACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCCG-ACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83909401 ACGAGTTCGATGCC
65 ACGAGCTCGATGCC
83909415 CAAATATCCC
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
92 8 0.11
93 63 0.86
94 2 0.03
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (92 bp):
GAACTCCGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGATGCCTAGTTACATCTCTC
Found at i:83911837 original size:30 final size:30
Alignment explanation
Indices: 83911793--83911881 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
83911783 CAAAGATAAC
83911793 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
83911822 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
83911852 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
83911882 CGATACTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:83911841 original size:15 final size:15
Alignment explanation
Indices: 83911793--83911872 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
83911783 CAAAGATAAC
*
83911793 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83911807 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
83911822 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
83911837 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83911852 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83911867 AAGAAA
1 AAGAAA
83911873 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83911881 original size:15 final size:15
Alignment explanation
Indices: 83911804--83911881 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
83911794 AGAAAACCGA
83911804 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
83911819 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
83911833 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
83911848 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83911864 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83911879 ATA
1 ATA
83911882 CGATACTATA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83913196 original size:154 final size:154
Alignment explanation
Indices: 83913036--83913344 Score: 591
Period size: 154 Copynumber: 2.0 Consensus size: 154
83913026 TTAACATAGA
83913036 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
83913101 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
66 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
83913166 TCTACTACTTTCTATTTATTCCGT
131 TCTACTACTTTCTATTTATTCCGT
*
83913190 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAATATT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
* *
83913255 CGATGTCCAAATCAAGACAATGATATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
66 CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
83913320 TCTACTACTTTCTATTTATTCCGT
131 TCTACTACTTTCTATTTATTCCGT
83913344 T
1 T
83913345 CATCTTATCA
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
154 152 1.00
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (154 bp):
TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTATATATCATTAACATTCATCAACATT
CGACGTCCAAATCAAGACAATGACATTTTCATTCATATCATAATATTATAACTTTTATTCATACC
TCTACTACTTTCTATTTATTCCGT
Found at i:83915075 original size:93 final size:93
Alignment explanation
Indices: 83914968--83915139 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83914958 GCCCATAAGT
* * * *
83914968 GAACTCGGACTCAACTCAATGAACTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83915033 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
**
83915061 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83915126 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
83915140 CAAATATCCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83915135 original size:46 final size:46
Alignment explanation
Indices: 83914960--83915135 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
83914950 TGTAACCCGC
* * * * *
83914960 CCATAAGTGAACTCGGACTCAACTCAATGAACTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
* *
83915006 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTAGCAT
* *** * *
83915052 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
*
83915099 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83915136 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 72 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
Found at i:83918624 original size:40 final size:39
Alignment explanation
Indices: 83918579--83918708 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
83918569 CGGAATATAA
83918579 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
83918619 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83918659 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
83918699 CCGGATATAA
1 CCGGATATAA
83918709 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:83918723 original size:40 final size:40
Alignment explanation
Indices: 83918595--83918745 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
83918585 ATAACCATGT
* * *
83918595 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
83918635 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
83918675 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
83918715 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
83918746 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:83918729 original size:80 final size:79
Alignment explanation
Indices: 83918595--83918743 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
83918585 ATAACCATGT
*
83918595 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
83918660 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
83918675 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
83918738 CCGGAT
64 CCGGAT
83918744 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:83926630 original size:40 final size:39
Alignment explanation
Indices: 83926585--83926714 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
83926575 CGGAATATAA
83926585 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
83926625 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83926665 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
83926705 CCGGATATAA
1 CCGGATATAA
83926715 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:83926729 original size:40 final size:40
Alignment explanation
Indices: 83926601--83926752 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
83926591 ATAACCATGT
* * *
83926601 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
83926641 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
83926681 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
83926721 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
83926753 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:83926735 original size:80 final size:80
Alignment explanation
Indices: 83926601--83926750 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
83926591 ATAACCATGT
*
83926601 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
83926665 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
83926681 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
83926744 CCCGGAT
64 CCCGGAT
83926751 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:83929121 original size:40 final size:40
Alignment explanation
Indices: 83929066--83929315 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
83929056 AACATTGGAA
83929066 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83929106 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83929146 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83929186 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83929226 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83929265 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83929306 CTATATCCGG
1 ATATATCCGG
83929316 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83937296 original size:40 final size:40
Alignment explanation
Indices: 83937241--83937489 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
83937231 AACATTGGAA
83937241 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83937281 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83937320 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
83937360 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
83937400 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
83937439 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
83937480 CTATATCCGG
1 ATATATCCGG
83937490 TTAAATCCCG
Statistics
Matches: 189, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 41 0.22
40 148 0.78
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:83937372 original size:79 final size:79
Alignment explanation
Indices: 83937241--83937489 Score: 374
Period size: 79 Copynumber: 3.1 Consensus size: 79
83937231 AACATTGGAA
83937241 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
83937306 CATTCGTGCGAGTG
66 CATTCGTGCGAGTG
83937320 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
83937385 CATTCGTGCGAGTTG
66 CATTCGTGCGAG-TG
* * * * * * * *
83937400 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAG
*
83937464 GCAATCGTGCGAGTCG
65 GCATTCGTGCGAGT-G
*
83937480 CTATATCCGG
1 ATATATCCGG
83937490 TTAAATCCCG
Statistics
Matches: 157, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 80 0.51
80 77 0.49
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (79 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCGAGTG
Found at i:83944430 original size:53 final size:53
Alignment explanation
Indices: 83944242--83944442 Score: 235
Period size: 55 Copynumber: 3.7 Consensus size: 53
83944232 TTTAAGAATC
* *
83944242 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAA
1 CCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAAGGACA
* * * *
83944297 TCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC-
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAGGACA
* * *
83944352 CCATGTAATATCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGCAAGGACA
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGACA
* *
83944405 CCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
83944443 TCAAAAGGAT
Statistics
Matches: 123, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 7 0.06
53 42 0.34
54 8 0.07
55 62 0.50
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGACA
Found at i:83944431 original size:108 final size:110
Alignment explanation
Indices: 83944240--83944442 Score: 322
Period size: 108 Copynumber: 1.9 Consensus size: 110
83944230 GGTTTAAGAA
*
83944240 TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAA
1 TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAA
*
83944305 GACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG
66 GACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGG
* * *
83944350 TCCCATGTAATATCATGCCAAGGCATGGC-ATTGGTAA-G-TTCATAAGGCAAGGACACCATGTA
1 TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTA
*
83944412 AGACCATGTCAAGACATGGCAATGGTAAGTT
65 AGACCATGTCAAGACATGGCAATGATAAGTT
83944443 TCAAAAGGAT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
107 3 0.03
108 48 0.56
109 8 0.09
110 27 0.31
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAA
GACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGG
Found at i:83944707 original size:16 final size:16
Alignment explanation
Indices: 83944686--83944716 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83944676 ATAAATTTGA
83944686 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
83944702 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
83944717 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:83958772 original size:28 final size:28
Alignment explanation
Indices: 83958683--83958761 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
83958673 TGGGAAGTAG
83958683 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCTTGATGGGCCATATGAATGTGA
* * *
83958711 TTGGGCCTAATAGGCCATATGAATGTGA
1 TTGGGCTTGATGGGCCATATGAATGTGA
*
83958739 TTGGGCTTGATGGGCCATGTGAA
1 TTGGGCTTGATGGGCCATATGAA
83958762 CGACATTGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (28 bp):
TTGGGCTTGATGGGCCATATGAATGTGA
Found at i:83959121 original size:27 final size:27
Alignment explanation
Indices: 83959091--83959597 Score: 353
Period size: 27 Copynumber: 19.0 Consensus size: 27
83959081 TAATAAAGAG
* *
83959091 AAATTACTAAAATACCCTTGATTTGCA
1 AAATTACTAAAATACCCTCGATTTGTA
* **
83959118 AAATTACGGACAAA-ACTATCGATTTGTA
1 AAATTAC-TA-AAATACCCTCGATTTGTA
* *
83959146 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
* *
83959172 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
83959199 AAATTACTAAAATACCCCCGATTTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
** * * * *
83959226 AAATTACCGAAACACCCTCGGTCTATA
1 AAATTACTAAAATACCCTCGATTTGTA
83959253 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
83959280 AAATTACTAAAATA-CCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
83959306 AAATTACCAAAATACCCTC----TGT-
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
83959328 TAGTTACCAAAATAGCCAT-GGTTTGTA
1 AAATTACTAAAATA-CCCTCGATTTGTA
* *
83959355 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* **
83959382 AAATTACTGAAATACCCTCGACATGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
83959409 AAACTA-TCAAAATACCCTCAACTTGTA
1 AAATTACT-AAAATACCCTCGATTTGTA
* * *
83959436 AAATTACAAAAATACGCTCGATTTGGA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * *
83959463 AAATTA-TCGAAATACTCTTGATTTGGA
1 AAATTACT-AAAATACCCTCGATTTGTA
* *
83959490 AAATTA-TAAAAATACCC-CTAATTTATA
1 AAATTACT-AAAATACCCTC-GATTTGTA
* * *
83959517 AAATTACAAAAATACCCTTGACTTT-CA
1 AAATTACTAAAATACCCTCGA-TTTGTA
* * * * *
83959544 AAAATAC-AGAAATACCATTGGTTTGCA
1 AAATTACTA-AAATACCCTCGATTTGTA
* *
83959571 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
83959598 GATTTACCAA
Statistics
Matches: 377, Mismatches: 79, Indels: 48
0.75 0.16 0.10
Matches are distributed among these distances:
22 12 0.03
23 6 0.02
26 59 0.16
27 275 0.73
28 22 0.06
29 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:83959899 original size:41 final size:41
Alignment explanation
Indices: 83959854--83959975 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
83959844 CGGATGAAGA
*
83959854 AATTGAGGATCGCATGGTTGCTTGACGACTGTGTATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
*
83959895 AATTGAGGATCTCATGGTTGCTTGACGA-TCGTGGATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACT-GTGGATCCACC
* * * * *
83959936 GATTAAGGATCGCGTGGTTGCTAGAGGACTGTGGATCCAC
1 AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCAC
83959976 TGGTGGCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
40 1 0.01
41 69 0.97
42 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (41 bp):
AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
Found at i:83963310 original size:27 final size:27
Alignment explanation
Indices: 83963280--83963836 Score: 473
Period size: 27 Copynumber: 20.7 Consensus size: 27
83963270 TAGTAAAGAG
*
83963280 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
83963307 AAATTACGAAAATACTCC-CGATTTGTA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
83963334 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
** *
83963360 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
83963387 AAATTACTAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * **
83963414 AAATTATCGAAACACGCTTAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
83963441 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
83963468 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
83963495 AAATTACCAAAATACCCTCGGTTAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
83963522 AAATTACCAAAATACTCAT-GGTTTATA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
83963549 AAATTACCAAAATA-CCTATGATTTGTGA
1 AAATTACCAAAATACCCT-CGATTTGT-A
* ** *
83963577 AAA-TACCAAAATACCCTTGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
83963603 AAATTATCAAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
83963630 AAATTATCGAAATACCCTAGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
83963657 AAATTACCAAAATACCC-CTAATTTGGA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
83963684 AAATTATCGAAATACTCTTGATTTGGA
1 AAATTACCAAAATACCCTCGATTTGTA
* * ** **
83963711 AAATTACAAAAATACCTTTAATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
83963738 AAATTACAAAAATACCCTTGACTTT-TA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * * *
83963765 AAAATACAAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
83963792 AAATTACCGAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
83963819 GATTTACCAAAACACCCT
1 AAATTACCAAAATACCCT
83963837 TGTAGGGTGA
Statistics
Matches: 437, Mismatches: 78, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
25 2 0.00
26 31 0.07
27 390 0.89
28 14 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:83963438 original size:54 final size:54
Alignment explanation
Indices: 83963280--83963836 Score: 536
Period size: 54 Copynumber: 10.3 Consensus size: 54
83963270 TAGTAAAGAG
* *
83963280 AAATTACTAAAATACCCTCGATTTGTAAAATTA-CGAAAATACTCC-CGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCG-AAATAC-CCTTGATTTGTA
* *
83963334 AAATTACCAAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * * * * *
83963387 AAATTACTAAAATACCC-CTGATTTGTGAAATTATCGAAACACGCTTAATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* *
83963441 AAATTACCAAAACACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * * * * * *
83963495 AAATTACCAAAATACCCTCGGTTAGTAAAATTACCAAAATACTCATGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * ** *
83963549 AAATTACCAAAATA-CCTATGATTTGTGAAAA-TACCAAAATACCCTTGACCTATA
1 AAATTACCAAAATACCCT-CGATTTGT-AAAATTACCGAAATACCCTTGATTTGTA
* * * * *
83963603 AAATTATCAAAATACCCTCAACTTGTAAAATTATCGAAATACCCTAGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * * * *
83963657 AAATTACCAAAATACCC-CTAATTTGGAAAATTATCGAAATACTCTTGATTTGGA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * ** ** **
83963711 AAATTACAAAAATACCTTTAATTTACAAAATTACAAAAATACCCTTGACTTT-TA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGA-TTTGTA
* * * * * *
83963765 AAAATACAAAAATACCATTGGTTTGTAAAATTACCGAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
* * *
83963819 GATTTACCAAAACACCCT
1 AAATTACCAAAATACCCT
83963837 TGTAGGGTGA
Statistics
Matches: 414, Mismatches: 76, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
52 3 0.01
53 53 0.13
54 347 0.84
55 11 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
Found at i:83964122 original size:41 final size:41
Alignment explanation
Indices: 83964077--83964199 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
83964067 AGAGGAAGAA
* *
83964077 ATTGAGGATCGCATGGTTGCTTGACGACTGTAGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
83964118 ATTGAGAATCGCATGGTTGCTTGACGACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * * *
83964159 ATTAAGGATCACACGGTTGCTAGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
83964200 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:83967845 original size:39 final size:39
Alignment explanation
Indices: 83967791--83967868 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
83967781 TGGGCACAAG
83967791 GTCTGGTGTATATGTTAGAAATATGTTGAGTGGAGAGGT
1 GTCTGGTGTATATGTTAGAAATATGTTGAGTGGAGAGGT
83967830 GTCTGGTGTATATGTTAGAAATATGTTGAGTGGAGAGGT
1 GTCTGGTGTATATGTTAGAAATATGTTGAGTGGAGAGGT
83967869 ATTCACCTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.03, G:0.36, T:0.36
Consensus pattern (39 bp):
GTCTGGTGTATATGTTAGAAATATGTTGAGTGGAGAGGT
Found at i:83969424 original size:6 final size:6
Alignment explanation
Indices: 83969394--83969518 Score: 60
Period size: 6 Copynumber: 20.3 Consensus size: 6
83969384 AAGAAACATT
* * * *
83969394 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACATA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
83969443 ATTAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATTAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
*
83969492 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
83969519 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 22, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
5 5 0.06
6 70 0.81
7 8 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:83969452 original size:31 final size:31
Alignment explanation
Indices: 83969415--83969518 Score: 145
Period size: 31 Copynumber: 3.4 Consensus size: 31
83969405 AATCAAAATG
*
83969415 AGAATCAGAATCAGAATCAGGTGACATAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATT
*
83969446 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATT
* * * *
83969477 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATT
*
83969508 AAAATCAGAAT
1 AGAATCAGAAT
83969519 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATT
Found at i:83969685 original size:27 final size:26
Alignment explanation
Indices: 83969637--83969696 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
83969627 GCGAAGCTGC
*
83969637 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* *
83969664 CAGATATTGTGGCTAAGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
83969690 TAGATAT
1 CAGATAT
83969697 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83970055 original size:27 final size:27
Alignment explanation
Indices: 83970032--83970175 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
83970022 AGGGGTAAAA
*
83970032 TGGTAATTTTACAAATCAGAGGTATTT
1 TGGTAATTTTACAAACCAGAGGTATTT
*
83970059 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGAGGTATTT
* * *
83970086 TGATAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGAGGTATTT
* * *
83970113 TGGTAATTTTGCTAATCA-AGGGTATTT
1 TGGTAATTTTACAAACCAGA-GGTATTT
* * *
83970140 TGGTAATTTTTCTAATC-GAGGGTATTT
1 TGGTAATTTTACAAACCAGA-GGTATTT
83970167 TGGTAATTT
1 TGGTAATTT
83970176 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAGAGGTATTT
Found at i:83970110 original size:54 final size:53
Alignment explanation
Indices: 83970035--83970175 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 53
83970025 GGTAAAATGG
* *
83970035 TAATTTTACAAATCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGA
1 TAATTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGA
* * * *
83970089 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTGCTAATCAAGGGTATTTTGG
1 TAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGA
* * *
83970143 TAATTTTTCTAATCGAGGGTATTTTGGTAATTT
1 TAATTTTACAAATAG-GGGTATTTTGGTAATTT
83970176 GGTAAACTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
53 2 0.03
54 73 0.96
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (53 bp):
TAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGA
Found at i:83973547 original size:28 final size:28
Alignment explanation
Indices: 83973515--83973585 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
83973505 TAAGGCCTTG
83973515 TATAGAGGTTATTTGGGTTTGAAATGAT
1 TATAGAGGTTATTTGGGTTTGAAATGAT
83973543 TATAGAGGTTATTTGGGTTTGAAATGAT
1 TATAGAGGTTATTTGGGTTTGAAATGAT
* *
83973571 TGTAAAGGTTATTTG
1 TATAGAGGTTATTTG
83973586 TATGAGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (28 bp):
TATAGAGGTTATTTGGGTTTGAAATGAT
Found at i:83974525 original size:173 final size:172
Alignment explanation
Indices: 83974232--83974544 Score: 475
Period size: 173 Copynumber: 1.8 Consensus size: 172
83974222 GGAGATATAT
* *
83974232 GAAATGAAACCTTTGTAGCGATATAAGAAATGGAAGCCTTTATGGTGATTTAAGAAATGGAGGCC
1 GAAATGAAACCTTTGTAGCGATAAAAGAAATGGAAGCCTTTATGGTGATTTAAGAAATGGAAGCC
* * *
83974297 GTGTGGAAAATGAAGAAAGGAAGCTTTTATGGCACACTCTAAAGAGAGGCCCTTATGGCAACCTT
66 GTGTGGAAAATGAAGAAAGGAAGCCTTTATGGCACACTCTAAAGAAAGGCCCTTATGGAAACCTT
* *
83974362 CTGAAGGAAAAGCCTCTATGGTAGACCCTAAAGGTGATTTAA
131 CCGAAAGAAAAGCCTCTATGGTAGACCCTAAAGGTGATTTAA
*
83974404 GAAATTGAAACCTGTT-TAGTGATAAAAGAAATGGAAGCCTTTATGGTGATTTAAGAAATGGAAG
1 GAAA-TGAAACCT-TTGTAGCGATAAAAGAAATGGAAGCCTTTATGGTGATTTAAGAAATGGAAG
* * * ** *
83974468 TCGTGTGGAAAATGAAGAAAGGACGCCTTTGTGGTGCACTTTAAAGAAAGGCCCTTATGGAAACC
64 CCGTGTGGAAAATGAAGAAAGGAAGCCTTTATGGCACACTCTAAAGAAAGGCCCTTATGGAAACC
83974533 TTCCGAAAGAAA
129 TTCCGAAAGAAA
83974545 CACCTCTGTA
Statistics
Matches: 125, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
172 4 0.03
173 119 0.95
174 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (172 bp):
GAAATGAAACCTTTGTAGCGATAAAAGAAATGGAAGCCTTTATGGTGATTTAAGAAATGGAAGCC
GTGTGGAAAATGAAGAAAGGAAGCCTTTATGGCACACTCTAAAGAAAGGCCCTTATGGAAACCTT
CCGAAAGAAAAGCCTCTATGGTAGACCCTAAAGGTGATTTAA
Found at i:83979038 original size:40 final size:40
Alignment explanation
Indices: 83978942--83979094 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
83978932 CGAATGGTAT
* * * *
83978942 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
83978983 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
83979023 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
83979063 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83979095 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:83983635 original size:19 final size:19
Alignment explanation
Indices: 83983611--83983651 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
83983601 AGTAATATCA
*
83983611 ATTGTATTCGACCTTCTTT
1 ATTGTATTCCACCTTCTTT
*
83983630 ATTGTATTCCATCTTCTTT
1 ATTGTATTCCACCTTCTTT
83983649 ATT
1 ATT
83983652 TAGGTATACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTGTATTCCACCTTCTTT
Found at i:83985362 original size:22 final size:24
Alignment explanation
Indices: 83985337--83985387 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 24
83985327 TTTAGAATAT
*
83985337 AATATTAAAAAT-A-TATAAGTAA
1 AATATTAAAAATAATTATAACTAA
*
83985359 AATA--AAATATAATTATAACTAA
1 AATATTAAAAATAATTATAACTAA
83985381 AATATTA
1 AATATTA
83985388 TTTTACTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
20 5 0.22
21 1 0.04
22 16 0.70
24 1 0.04
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
AATATTAAAAATAATTATAACTAA
Found at i:83985368 original size:16 final size:17
Alignment explanation
Indices: 83985332--83985385 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 17
83985322 TATTTTTTAG
83985332 AATATAA-TATTAAA-AA
1 AATATAAGTA-TAAATAA
*
83985348 TATATAAGTA-AAATAA
1 AATATAAGTATAAATAA
* *
83985364 AATATAATTATAACTAA
1 AATATAAGTATAAATAA
83985381 AATAT
1 AATAT
83985386 TATTTTACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 3 0.10
16 16 0.52
17 12 0.39
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AATATAAGTATAAATAA
Found at i:83985676 original size:14 final size:14
Alignment explanation
Indices: 83985657--83985697 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
83985647 TAATATTAAA
*
83985657 AATTAAAAATTTAT
1 AATTAAAAAATTAT
83985671 AATTAAGAAAATTAT
1 AATTAA-AAAATTAT
83985686 -ATTAAAAAATTA
1 AATTAAAAAATTA
83985698 AAAATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 7 0.28
14 11 0.44
15 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (14 bp):
AATTAAAAAATTAT
Found at i:83989939 original size:29 final size:29
Alignment explanation
Indices: 83989897--83989954 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
83989887 TTTTGAAAGG
83989897 GGAGTTCTCTTTTTCTTTCTTCTAAAATA
1 GGAGTTCTCTTTTTCTTTCTTCTAAAATA
83989926 GGAGTTCTCTTTTTCTTTCTTCTAAAATA
1 GGAGTTCTCTTTTTCTTTCTTCTAAAATA
83989955 TTGTTGTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (29 bp):
GGAGTTCTCTTTTTCTTTCTTCTAAAATA
Found at i:83991662 original size:28 final size:28
Alignment explanation
Indices: 83991631--83991688 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
83991621 GGAGGAACGA
83991631 TGCCAGGACTACGCTAGGGGAAAAATGG
1 TGCCAGGACTACGCTAGGGGAAAAATGG
83991659 TGCCAGGACTACGCTAGGGGAAAAATGG
1 TGCCAGGACTACGCTAGGGGAAAAATGG
83991687 TG
1 TG
83991689 TATCGGGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.36, T:0.16
Consensus pattern (28 bp):
TGCCAGGACTACGCTAGGGGAAAAATGG
Found at i:83995526 original size:85 final size:87
Alignment explanation
Indices: 83995427--83995647 Score: 290
Period size: 85 Copynumber: 2.6 Consensus size: 87
83995417 TTAGACTTCG
* *
83995427 CCATTCATACTATCCTTTCAGAGTTCGTCAATG-ATACC-TTTGCTTTCTTTTAGAATCTACCAC
1 CCATTCATACTATCCCTTCAGAGTTCGTCAAGGAATACCATTT-CTTTCTTTTAGAATCTACCAC
* * *
83995490 TAAGGTGTTTCTTTTAGAG-TTT
65 AAAGGTGTTTCCTTCAGAGTTTT
** *
83995512 CCATTCATACTATCCCTTCAGAGTTCGTC-AGGAATACCATTTCTTTCTTTTAGGGTTTACCACA
1 CCATTCATACTATCCCTTCAGAGTTCGTCAAGGAATACCATTTCTTTCTTTTAGAATCTACCACA
*
83995576 AAGGTGTTTCCTTCATAGTTTT
66 AAGGTGTTTCCTTCAGAGTTTT
* * *
83995598 CCATTCATACTATCCCTTCAGAGTTCGTC-AGAAATATCATTTATTTCTTT
1 CCATTCATACTATCCCTTCAGAGTTCGTCAAGGAATACCATTTCTTTCTTT
83995648 CAAGGTCCGC
Statistics
Matches: 121, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
84 2 0.02
85 66 0.55
86 53 0.44
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (87 bp):
CCATTCATACTATCCCTTCAGAGTTCGTCAAGGAATACCATTTCTTTCTTTTAGAATCTACCACA
AAGGTGTTTCCTTCAGAGTTTT
Found at i:83995671 original size:86 final size:86
Alignment explanation
Indices: 83995427--83995674 Score: 243
Period size: 86 Copynumber: 2.9 Consensus size: 86
83995417 TTAGACTTCG
* * * * * *
83995427 CCATTCATACTATCCTTTCAGAGTTCGTCA-ATGATACC-TTTGCTTTCTTT-TAGAATCTACCA
1 CCATTCATACTATCCCTTCAGAGTTCGTCAGA-AATACCATTT-ATTTCTTTCAAG-GTCCACCA
* * * * *
83995489 CTAAGGTGTTTCTTTTAGAG-TTT
63 CAAAGGCGTTTCCTTCATAGTTTT
* * * * **
83995512 CCATTCATACTATCCCTTCAGAGTTCGTCAGGAATACCATTTCTTTCTTTTAGGGTTTACCACAA
1 CCATTCATACTATCCCTTCAGAGTTCGTCAGAAATACCATTTATTTCTTTCAAGGTCCACCACAA
*
83995577 AGGTGTTTCCTTCATAGTTTT
66 AGGCGTTTCCTTCATAGTTTT
* * * *
83995598 CCATTCATACTATCCCTTCAGAGTTCGTCAGAAATATCATTTATTTCTTTCAAGGTCCGCCATAG
1 CCATTCATACTATCCCTTCAGAGTTCGTCAGAAATACCATTTATTTCTTTCAAGGTCCACCACAA
83995663 AGGCGTTTCCTT
66 AGGCGTTTCCTT
83995675 TAGATGGTTG
Statistics
Matches: 137, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
85 64 0.47
86 73 0.53
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (86 bp):
CCATTCATACTATCCCTTCAGAGTTCGTCAGAAATACCATTTATTTCTTTCAAGGTCCACCACAA
AGGCGTTTCCTTCATAGTTTT
Found at i:83995838 original size:27 final size:28
Alignment explanation
Indices: 83995759--83995840 Score: 114
Period size: 27 Copynumber: 3.0 Consensus size: 28
83995749 TTCCTGTTGT
*
83995759 TAGATCGCCACAAAGGCTTCCA-TTTCA
1 TAGATTGCCACAAAGGCTTCCATTTTCA
* *
83995786 TAGATTTCCCCAAAGGCTTCCATTTTC-
1 TAGATTGCCACAAAGGCTTCCATTTTCA
*
83995813 TAGATTGCCATAAAGGCTTCCATTTTCA
1 TAGATTGCCACAAAGGCTTCCATTTTCA
83995841 AGCGTGTTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 43 0.91
28 4 0.09
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (28 bp):
TAGATTGCCACAAAGGCTTCCATTTTCA
Found at i:83997701 original size:23 final size:24
Alignment explanation
Indices: 83997652--83997811 Score: 85
Period size: 24 Copynumber: 6.7 Consensus size: 24
83997642 TCTTGTAATG
*
83997652 GGAAGCTCACACAGAGCCATTTCA
1 GGAAGCTCACAAAGAGCCATTTCA
*
83997676 GGAAGCTCATAAAGAGCC-TTTCA
1 GGAAGCTCACAAAGAGCCATTTCA
* ** * * * *
83997699 GGAAGCTTAC-CCGGGCTATATAA
1 GGAAGCTCACAAAGAGCCATTTCA
* * *
83997722 TGGGAAGCTCA-TAAGAGCCATAATCG
1 --GGAAGCTCACAAAGAGCCAT-TTCA
* * * *
83997748 GGAAGTTCACAAAGAACCATATCG
1 GGAAGCTCACAAAGAGCCATTTCA
** *
83997772 GGAAGCTCATGAAGAGCC-TATCA
1 GGAAGCTCACAAAGAGCCATTTCA
*
83997795 AGAAGCTCACAAAGAGC
1 GGAAGCTCACAAAGAGC
83997812 AATGTAACAA
Statistics
Matches: 102, Mismatches: 28, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
22 3 0.03
23 34 0.33
24 42 0.41
25 21 0.21
26 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (24 bp):
GGAAGCTCACAAAGAGCCATTTCA
Found at i:84011231 original size:46 final size:44
Alignment explanation
Indices: 84011172--84011286 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
84011162 ACAGGACAGA
* *
84011172 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
84011218 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
84011262 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
84011287 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:84011267 original size:44 final size:45
Alignment explanation
Indices: 84011172--84011305 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
84011162 ACAGGACAGA
* *
84011172 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
84011218 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
84011262 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
84011306 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:84015032 original size:25 final size:25
Alignment explanation
Indices: 84015004--84015064 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
84014994 GTTGTGAATT
* * *
84015004 GGTATGCTCACTCGAGCTATAGATC
1 GGTATGCTCACGCGAGCTATAAATA
*
84015029 GGTATGCTCTCGCGAGCTATAAATA
1 GGTATGCTCACGCGAGCTATAAATA
*
84015054 GGTATACTCAC
1 GGTATGCTCAC
84015065 ATGATTTGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
GGTATGCTCACGCGAGCTATAAATA
Found at i:84018717 original size:18 final size:18
Alignment explanation
Indices: 84018694--84018731 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
84018684 AAAAATCACT
84018694 TAACAA-AATACTTATAAA
1 TAACAACAATACTTA-AAA
84018712 TAACAACTAATACTTAAAA
1 TAACAAC-AATACTTAAAA
84018731 T
1 T
84018732 TAATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (18 bp):
TAACAACAATACTTAAAA
Found at i:84029393 original size:24 final size:24
Alignment explanation
Indices: 84029366--84029423 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
84029356 ATAAGAGCCA
*
84029366 TAATCGGGATGTTCACAAAGAACC
1 TAATCGGGAAGTTCACAAAGAACC
*
84029390 TAATCAGGAAGTTCACAAAGAACC
1 TAATCGGGAAGTTCACAAAGAACC
84029414 -ATATCGGGAA
1 TA-ATCGGGAA
84029424 TCTCCAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (24 bp):
TAATCGGGAAGTTCACAAAGAACC
Found at i:84029642 original size:24 final size:24
Alignment explanation
Indices: 84029591--84029648 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
84029581 TCTGAAGAGC
*
84029591 TATAACGGGAAGCTCGCTGAACCA
1 TATAACGGGAAGCTCGCAGAACCA
* *
84029615 TATAACGGGAAGCTCG-AGAAGGCT
1 TATAACGGGAAGCTCGCAGAA-CCA
84029639 TATAACGGGA
1 TATAACGGGA
84029649 CACTCATAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.17
Consensus pattern (24 bp):
TATAACGGGAAGCTCGCAGAACCA
Found at i:84032484 original size:49 final size:49
Alignment explanation
Indices: 84032425--84032831 Score: 294
Period size: 49 Copynumber: 8.5 Consensus size: 49
84032415 AAGTCGATGT
*
84032425 CATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGTCCATGC
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCCATGC
* * * * * * *
84032474 CGTGTCCCAGATAAGTTTTACACT-AGCTCTCATCTATCG-GTGTCGATGC
1 CATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAG-GTCCATGC
* ** *
84032523 CATGTCCCAGACATGTCTTATGCTGACTTTCATATATCGAGG-CCGATGT
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCC-ATGC
** * * * * *
84032572 TGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATC-AGTGTCGATGC
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GTCCATGC
* * *
84032621 CATGTCCTAGACAGGTCTTACACTAAATTTCATATATCGAGG-CCGATGC
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCC-ATGC
* * * *
84032670 CGTGTCCCAGATAGTTCTTACACT-AGCTCTT-ATCTATC-A-GTGCCGATGC
1 CATGTCCCAGACAGGTCTTACACTGA-CT-TTCATATATCGAGGT-CC-ATGC
*
84032719 CATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGA----C--G-
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCCATGC
* * * * *
84032761 --TGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCG-GTGTCGATGC
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GTCCATGC
*
84032808 CATGTCCCAAACAGGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
84032832 AACACACAAC
Statistics
Matches: 278, Mismatches: 54, Indels: 52
0.72 0.14 0.14
Matches are distributed among these distances:
40 32 0.12
43 1 0.00
46 2 0.01
47 1 0.00
48 10 0.04
49 223 0.80
50 9 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCCATGC
Found at i:84032593 original size:98 final size:97
Alignment explanation
Indices: 84032417--84032834 Score: 539
Period size: 98 Copynumber: 4.4 Consensus size: 97
84032407 AACACATCAA
* * *
84032417 GTCGATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGTCCATGCCGTGTCCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGG-CCATGCCGTGTCCC
* *
84032482 AGATAAGTTTTACACTAGCTCTCATCTATCGGT
65 AGATAAGTCTTACACTAGCTCTCATCTATCAGT
* ** * **
84032515 GTCGATGCCATGTCCCAGACATGTCTTATGCTGACTTTCATATATCGAGGCCGATGTTGTGTCCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCC-ATGCCGTGTCCC
* *
84032580 AGACAAGTCTTACACTGGCTCTCATCTATCAGT
65 AGATAAGTCTTACACTAGCTCTCATCTATCAGT
* *
84032613 GTCGATGCCATGTCCTAGACAGGTCTTACACTAAATTTCATATATCGAGGCCGATGCCGTGTCCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCC-ATGCCGTGTCCC
*
84032678 AGAT-AGTTCTTACACTAGCTCTTATCTATCAGT
65 AGATAAG-TCTTACACTAGCTCTCATCTATCAGT
*
84032711 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATC---G--A---CGTGTCCCA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCATGCCGTGTCCCA
* * * *
84032768 GATAGGTCTTACACTGGCTCTCATTTATCGGT
66 GATAAGTCTTACACTAGCTCTCATCTATCAGT
*
84032800 GTCGATGCCATGTCCCAAACAGGTCTTACACTAAC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAAC
84032835 ACACAACAAG
Statistics
Matches: 285, Mismatches: 32, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
89 67 0.24
90 1 0.00
92 1 0.00
95 1 0.00
97 4 0.01
98 211 0.74
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCATGCCGTGTCCCA
GATAAGTCTTACACTAGCTCTCATCTATCAGT
Found at i:84032627 original size:147 final size:145
Alignment explanation
Indices: 84032419--84032832 Score: 386
Period size: 147 Copynumber: 2.9 Consensus size: 145
84032409 CACATCAAGT
* * * *
84032419 CGATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAG-GTCCATGCCGTGTCCCA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC-TTCATCTATC-AGTGTCGATGCCGTGTCCCA
* * * **
84032483 GATAAGTTTTACACTAGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACATGTCTTATGCT-
64 GATAGGTCTTACACTAGCTCTCATATATCGGTGTCGATGCCATGTCCCAGACA-GTCTTACACTA
84032547 GACT-TTCATATATCGAG-GC
128 G-CTCTT-ATATATC-AGTGC
*** * * * *
84032566 CGATGTTGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACT-TCATCTATCAGTGTCGATGCCGTGTCCCAG
* ** * * * *
84032631 ACAGGTCTTACACTAAATTTCATATATCGAG-GCCGATGCCGTGTCCCAGATAGTTCTTACACTA
65 ATAGGTCTTACACTAGCTCTCATATATCG-GTGTCGATGCCATGTCCCAGACAG-TCTTACACTA
*
84032695 GCTCTTATCTATCAGTGC
128 GCTCTTATATATCAGTGC
* *
84032713 CGATGCCATGTCCCAGACAGGTCTTACACTAACTT--TC-AT-A-TATCGA---CGTGTCCCAGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATCTATCAGTGTCGATGCCGTGTCCCAGA
* * *
84032770 TAGGTCTTACACTGGCTCTCATTTATCGGTGTCGATGCCATGTCCCAAACAGGTCTTACACTA
66 TAGGTCTTACACTAGCTCTCATATATCGGTGTCGATGCCATGTCCCAGACA-GTCTTACACTA
84032833 ACACACAACA
Statistics
Matches: 217, Mismatches: 41, Indels: 27
0.76 0.14 0.09
Matches are distributed among these distances:
137 1 0.00
138 58 0.27
139 1 0.00
141 5 0.02
142 1 0.00
143 2 0.01
144 2 0.01
146 7 0.03
147 136 0.63
148 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (145 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATCTATCAGTGTCGATGCCGTGTCCCAGA
TAGGTCTTACACTAGCTCTCATATATCGGTGTCGATGCCATGTCCCAGACAGTCTTACACTAGCT
CTTATATATCAGTGC
Found at i:84032751 original size:196 final size:187
Alignment explanation
Indices: 84032417--84032924 Score: 579
Period size: 196 Copynumber: 2.7 Consensus size: 187
84032407 AACACATCAA
* * * *
84032417 GTCGATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGTCC-ATGCCGTGTCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAAATTTCATATATCGAGG-CCGATGCCGTGTCC
* * * **
84032481 CAGATAAGTT-TTACACTAGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACATGTCTTATG
65 CAGAT-AGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACATGTCTTACA
*
84032545 CTGACTTTCATATATCGAGGCCGATGTTGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATC
129 CTAACTTTCATATATCGA---C------GTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATC
84032610 AGT
185 AGT
*
84032613 GTCGATGCCATGTCCTAGACAGGTCTTACACTAAATTTCATATATCGAGGCCGATGCCGTGTCCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAAATTTCATATATCGAGGCCGATGCCGTGTCCC
*
84032678 AGATAGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGTCTTACACT
66 AGATAGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACATGTCTTACACT
* * * *
84032743 AACTTTCATATATCGACGTGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCGGT
131 AACTTTCATATATCGACGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGT
* * * * ** *
84032800 GTCGATGCCATGTCCCAAACAGGTCTTACACTAACA---CACA-A-C-AAGCTGACACCATGTCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAA-ATTTCATATATCGAGGCCGATGCCGTGTCC
* * *
84032859 CAGATAGGTCTTACACTAGCTTGTATATCT-TGAG-GCCGATG-CATGTCCCAGACATGTCTTAC
65 CAGATAGTTCTTACACTAGC-TCT-TATCTATCAGTGCCGATGCCATGTCCCAGACATGTCTTAC
84032921 ACTA
128 ACTA
84032925 GTTCTCGTCT
Statistics
Matches: 279, Mismatches: 28, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
181 24 0.09
182 38 0.14
183 6 0.02
184 6 0.02
185 3 0.01
187 68 0.24
188 1 0.00
193 1 0.00
195 6 0.02
196 126 0.45
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (187 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTAAATTTCATATATCGAGGCCGATGCCGTGTCCC
AGATAGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACATGTCTTACACT
AACTTTCATATATCGACGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGT
Found at i:84032797 original size:40 final size:40
Alignment explanation
Indices: 84032721--84032797 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
84032711 GCCGATGCCA
*
84032721 TGTCCCAGACAGGTCTTACACTAACTTTCATATATCGACG
1 TGTCCCAGACAGGTCTTACACTAACTCTCATATATCGACG
* ** *
84032761 TGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCG
1 TGTCCCAGACAGGTCTTACACTAACTCTCATATATCG
84032798 GTGTCGATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.32
Consensus pattern (40 bp):
TGTCCCAGACAGGTCTTACACTAACTCTCATATATCGACG
Found at i:84032822 original size:89 final size:89
Alignment explanation
Indices: 84032670--84032834 Score: 267
Period size: 89 Copynumber: 1.9 Consensus size: 89
84032660 AGGCCGATGC
* * *
84032670 CGTGTCCCAGATAGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGT
1 CGTGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCAGTGCCGATGCCATGTCCCAAACAGGT
84032735 CTTACACTAACTTTCATATATCGA
66 CTTACACTAACTTTCATATATCGA
* * * *
84032759 CGTGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCGGTGTCGATGCCATGTCCCAAACAGGT
1 CGTGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCAGTGCCGATGCCATGTCCCAAACAGGT
84032824 CTTACACTAAC
66 CTTACACTAAC
84032835 ACACAACAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (89 bp):
CGTGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCAGTGCCGATGCCATGTCCCAAACAGGT
CTTACACTAACTTTCATATATCGA
Found at i:84032918 original size:48 final size:48
Alignment explanation
Indices: 84032852--84033066 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 48
84032842 AAGCTGACAC
* * **
84032852 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* ** * *
84032900 CATGTCCCAGACATGTCTTACACTAG-TTCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * ** *
84032946 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAGGGCATATA
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * ** * **
84032994 CGTGTCCCAAACATGTCTTGCACTGGCTCTCAATATGT---GTTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAGGCCGATG
*
84033040 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
84033067 ACACATATCA
Statistics
Matches: 129, Mismatches: 35, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
46 62 0.48
47 5 0.04
48 57 0.44
49 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:84032954 original size:187 final size:185
Alignment explanation
Indices: 84032476--84032973 Score: 490
Period size: 187 Copynumber: 2.6 Consensus size: 185
84032466 GTCCATGCCG
* * * * * *
84032476 TGTCCCAGATAAGTTTTACACTAGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACATGTCT
1 TGTCCCAGATAGGTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGTCT
** *
84032541 TATGCTGACTTTCATATATCGAGGCCGATGTTGTGTCCCAGACAAGTCTTACACTGGCTCTCATC
66 TACACTAACTTTCATATATCGA---C-A-----TGTCCCAGACAAGTCTTACACTGGCTCTCATC
* * * * **
84032606 TATCAGTGTCGATGCCATGTCCTAGACAGGTCTTACACTAAATTTCATATATCGAGGCCGATGCC
122 TATCAGTGTCGATGCCATGTCCCAAACAGGTCTTACACTAAA--TCACATATCGAAGCCGACACC
*
84032671 G
185 A
*
84032672 TGTCCCAGATAGTTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGTCT
1 TGTCCCAGATAGGTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGTCT
* * * * *
84032737 TACACTAACTTTCATATATCGACGTGTCCCAGATAGGTCTTACACTGGCTCTCATTTATCGGTGT
66 TACACTAACTTTCATATATCGACATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGTGT
*
84032802 CGATGCCATGTCCCAAACAGGTCTTACACTAACA-CACA-A-C-AAGCTGACACCA
131 CGATGCCATGTCCCAAACAGGTCTTACACTAA-ATCACATATCGAAGCCGACACCA
* * *
84032854 TGTCCCAGATAGGTCTTACACTAGCTTGTATATCT-TGAG-GCCGATG-CATGTCCCAGACATGT
1 TGTCCCAGATAGGTCTTACACTAGC-TCT-TATCTATCAGTGCCGATGCCATGTCCCAGACAGGT
* * *
84032916 CTTACACTAGTTCTCGTCTCA-ATGTCGATGCATGTCCCAGACATGTCTTACACTGGCT
64 CTTACACTA--ACT--T-TCATATATCGA--CATGTCCCAGACAAGTCTTACACTGGCT
84032974 GGTATATCTC
Statistics
Matches: 260, Mismatches: 32, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
181 24 0.09
182 38 0.15
183 8 0.03
184 6 0.02
185 10 0.04
186 3 0.01
187 92 0.35
188 1 0.00
193 1 0.00
196 77 0.30
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (185 bp):
TGTCCCAGATAGGTCTTACACTAGCTCTTATCTATCAGTGCCGATGCCATGTCCCAGACAGGTCT
TACACTAACTTTCATATATCGACATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGTGT
CGATGCCATGTCCCAAACAGGTCTTACACTAAATCACATATCGAAGCCGACACCA
Found at i:84032968 original size:94 final size:94
Alignment explanation
Indices: 84032852--84033066 Score: 229
Period size: 94 Copynumber: 2.3 Consensus size: 94
84032842 AAGCTGACAC
* * * * * * *
84032852 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCT-TGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAG-GGCAGATACATGTCCCAAACATGT
* * *
84032916 CTTACACTAGTTCTC-GTCTCAATG-TCGATG
65 CTTACACTAGCTCTCAATAT--ATGTTCGATG
* * *
84032946 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAGGGCATATACGTGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAGGGCAGATACATGTCCCAAACATGTC
* * *
84033011 TTGCACTGGCTCTCAATATGTGTTCGATG
66 TTACACTAGCTCTCAATATATGTTCGATG
*
84033040 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
84033067 ACACATATCA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
93 2 0.02
94 95 0.95
95 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAGGGCAGATACATGTCCCAAACATGTC
TTACACTAGCTCTCAATATATGTTCGATG
Found at i:84038367 original size:25 final size:25
Alignment explanation
Indices: 84038333--84038402 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
84038323 CAGGCCTATT
84038333 TTCACAGCTCGTGTGAGCATTCTAA
1 TTCACAGCTCGTGTGAGCATTCTAA
* * *
84038358 TTCACAGCTCATCTGAGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTCTAA
84038383 TTCACAGCTCGTGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
84038403 ACATGTACAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTCTAA
Found at i:84040409 original size:17 final size:17
Alignment explanation
Indices: 84040389--84040422 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84040379 GTCTCAATCG
* *
84040389 TGTGTGACACACGGCCA
1 TGTGTAACACACAGCCA
84040406 TGTGTAACACACAGCCA
1 TGTGTAACACACAGCCA
84040423 GGCGAAACGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.18
Consensus pattern (17 bp):
TGTGTAACACACAGCCA
Found at i:84042493 original size:69 final size:67
Alignment explanation
Indices: 84042352--84042480 Score: 195
Period size: 68 Copynumber: 1.9 Consensus size: 67
84042342 ACATCTCGTC
** * *
84042352 TGAGCAGCATCATGTAGCAACATTTTGACCTACAGCTCATATGAGCAAGCCCATTTCACAACTCA
1 TGAGCAGCATCATGTAGCAACATTCAGACCCACAGCTCATATGAGAAAGCCCATTTCACAACTCA
84042417 TA
66 TA
*
84042419 TGAGCAGCATCATGTAGCTAACATTCAGACCCACAGCTCATGTGAGTAAAGCCCATTTCACA
1 TGAGCAGCATCATGTAGC-AACATTCAGACCCACAGCTCATATGAG-AAAGCCCATTTCACA
84042481 GCTTGTGTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 18 0.33
68 23 0.42
69 14 0.25
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (67 bp):
TGAGCAGCATCATGTAGCAACATTCAGACCCACAGCTCATATGAGAAAGCCCATTTCACAACTCA
TA
Found at i:84043668 original size:19 final size:19
Alignment explanation
Indices: 84043646--84043687 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
84043636 ATTGTTACGT
*
84043646 GGCCTTGGG-TATGTTACAC
1 GGCC-TGGGCTATGTCACAC
84043665 GGCCTGGGCTATGTCACAC
1 GGCCTGGGCTATGTCACAC
84043684 GGCC
1 GGCC
84043688 GTGTAACCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.14, C:0.29, G:0.33, T:0.24
Consensus pattern (19 bp):
GGCCTGGGCTATGTCACAC
Found at i:84044064 original size:42 final size:42
Alignment explanation
Indices: 84043942--84044070 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 42
84043932 AGAGATGGGT
84043942 TAGGGTGTTACAGAGATAGGT-TAAAAGTTGTTGATGAAGGTTTA
1 TAGGGTGTT--AGAGAT-GGTATAAAAGTTGTTGATGAAGGTTTA
* * * * **
84043986 TGGGGTGTTAGATATGGTCTAAAAGCTACT-AGTGAAGGTTTA
1 TAGGGTGTTAGAGATGGTATAAAAGTTGTTGA-TGAAGGTTTA
* *
84044028 TAGGGTGTTGGAGATGGTATAGAAGTTGTTGATGAAGGTTTA
1 TAGGGTGTTAGAGATGGTATAAAAGTTGTTGATGAAGGTTTA
84044070 T
1 T
84044071 GTAACACCCC
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.06
42 56 0.81
43 1 0.01
44 8 0.12
ACGTcount: A:0.29, C:0.03, G:0.33, T:0.35
Consensus pattern (42 bp):
TAGGGTGTTAGAGATGGTATAAAAGTTGTTGATGAAGGTTTA
Found at i:84045754 original size:28 final size:28
Alignment explanation
Indices: 84045723--84045789 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
84045713 TCTTAATGAC
84045723 AATTTGAAAGTTGGATTAT-TGATTCCAT
1 AATTTGAAAGTTGGATTATAT-ATTCCAT
84045751 AATTTGAAAGTTGGATTATATATTCCAT
1 AATTTGAAAGTTGGATTATATATTCCAT
* *
84045779 ACTCTGAAAGT
1 AATTTGAAAGT
84045790 ATTTGATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (28 bp):
AATTTGAAAGTTGGATTATATATTCCAT
Found at i:84048180 original size:29 final size:29
Alignment explanation
Indices: 84048148--84048204 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
84048138 AAGGAAGAGT
* * *
84048148 GAAGAAAGGAGGGAGTTTGAAGGTTAAAA
1 GAAGAAAGGAGAGAGTATGAAGGCTAAAA
84048177 GAAGAAAGGAGAGAGTATGAAGGCTAAA
1 GAAGAAAGGAGAGAGTATGAAGGCTAAA
84048205 GGCAGTCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.37, T:0.14
Consensus pattern (29 bp):
GAAGAAAGGAGAGAGTATGAAGGCTAAAA
Found at i:84050522 original size:40 final size:40
Alignment explanation
Indices: 84050395--84050524 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
84050385 ATGCTGGAAA
* * *
84050395 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
84050435 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
84050475 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
84050515 TTATATCCGG
1 TTATATCCGG
84050525 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:84058546 original size:40 final size:40
Alignment explanation
Indices: 84058419--84058548 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
84058409 ATGCTGGAAA
* *
84058419 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
84058459 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
84058499 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
84058539 TTATATCCGG
1 TTATATCCGG
84058549 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:84073838 original size:40 final size:40
Alignment explanation
Indices: 84073793--84073959 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
84073783 CGGAATATAA
84073793 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
84073833 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
84073873 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
84073913 CCGGATATAATTTCCAGCATAATTGTC-TCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84073952 CCGGATAT
1 CCGGATAT
84073960 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 19 0.18
40 87 0.82
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84081869 original size:40 final size:39
Alignment explanation
Indices: 84081824--84081953 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
84081814 CGGAATATAA
84081824 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
84081864 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84081904 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
84081944 CCGGATATAA
1 CCGGATATAA
84081954 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84081968 original size:40 final size:40
Alignment explanation
Indices: 84081840--84081991 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
84081830 ATAACCATGT
* * *
84081840 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
84081880 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
84081920 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
84081960 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
84081992 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:84081974 original size:80 final size:80
Alignment explanation
Indices: 84081840--84081989 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
84081830 ATAACCATGT
*
84081840 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84081904 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
84081920 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84081983 CCCGGAT
64 CCCGGAT
84081990 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84088572 original size:29 final size:29
Alignment explanation
Indices: 84088539--84088640 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
84088529 TGACGAGATC
84088539 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
84088568 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
84088597 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
84088626 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
84088641 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:84090343 original size:2 final size:2
Alignment explanation
Indices: 84090336--84090381 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
84090326 AAACTCACGC
84090336 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84090377 AT AT A
1 AT AT A
84090382 ACAAAAACCA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84090408 original size:35 final size:36
Alignment explanation
Indices: 84090364--84090451 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
84090354 ATATATATAT
* *
84090364 ATATATATATTATATAT--AACAAAAACCATGCACCC
1 ATATTTATATTATATATACAAC-AAAACCATGCACAC
84090399 ATATTTATATTATATATACAACAAAACCATGCACAC
1 ATATTTATATTATATATACAACAAAACCATGCACAC
*
84090435 ATATTAATATTATATAT
1 ATATTTATATTATATAT
84090452 GCACCTACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
35 16 0.33
36 29 0.60
37 3 0.06
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (36 bp):
ATATTTATATTATATATACAACAAAACCATGCACAC
Found at i:84096056 original size:2 final size:2
Alignment explanation
Indices: 84096051--84096110 Score: 65
Period size: 2 Copynumber: 32.0 Consensus size: 2
84096041 ATTAATTTAG
* * *
84096051 AT AT AT AT AT AA AT A- AT TT A- AT AT A- AT -T AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84096089 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
84096111 GCACTGTCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
1 4 0.08
2 44 0.92
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:84104184 original size:17 final size:17
Alignment explanation
Indices: 84104158--84104190 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
84104148 TAGTAAAGAT
84104158 ATATAAAATTA-TTAAC
1 ATATAAAATTAGTTAAC
84104174 ATATCAAAATTAGTTAA
1 ATAT-AAAATTAGTTAA
84104191 ATTATTTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (17 bp):
ATATAAAATTAGTTAAC
Found at i:84120564 original size:48 final size:48
Alignment explanation
Indices: 84120510--84120728 Score: 239
Period size: 48 Copynumber: 4.6 Consensus size: 48
84120500 TGAGATCCCA
* * *
84120510 TGTAAGACCATGTTTGGGACATGGCATTGGCATCGAGATGAGATCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCCTG
* * * * *
84120558 TATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCCT-G
* * * *
84120606 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACG-TGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGTGATCCTG
* * * *
84120654 TGTAAGGCCATGTCTGGGACATGGCATCGGCATCGATATGTGAT-TTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCCT-G
84120702 TGTAAGACCATGT-TGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
84120729 ATTATGAGAC
Statistics
Matches: 141, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
47 17 0.12
48 123 0.87
49 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGTGATCCTG
Found at i:84120629 original size:96 final size:95
Alignment explanation
Indices: 84120503--84120728 Score: 278
Period size: 96 Copynumber: 2.4 Consensus size: 95
84120493 GTACATGTGA
* * * * *
84120503 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGA-GATGAGATCCTGTATAAGACC
1 GATCTCATGTAAGACCATG-TTGGGACATGGCATCGGCATCAACG-TGAGAGCCAGTATAAGACC
* *
84120567 ATGTCTGGGACATGGCATCGGCGTTGATATGT
64 ATGTCTGGGACATGGCATCGGCATCGATATGT
* * * *
84120599 G-TGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACGTGTGAGCCAGTGTAAGGC
1 GAT-CTCA-TGTAAGACCATGT-TGGGACATGGCATCGGCATCAACGTGAGAGCCAGTATAAGAC
84120662 CATGTCTGGGACATGGCATCGGCATCGATATGT
63 CATGTCTGGGACATGGCATCGGCATCGATATGT
*
84120695 GATTTCATGTAAGACCATGTTGGGACATGGCATC
1 GATCTCATGTAAGACCATGTTGGGACATGGCATC
84120729 ATTATGAGAC
Statistics
Matches: 112, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
95 17 0.15
96 92 0.82
97 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (95 bp):
GATCTCATGTAAGACCATGTTGGGACATGGCATCGGCATCAACGTGAGAGCCAGTATAAGACCAT
GTCTGGGACATGGCATCGGCATCGATATGT
Found at i:84120790 original size:43 final size:42
Alignment explanation
Indices: 84120682--84120811 Score: 140
Period size: 43 Copynumber: 3.1 Consensus size: 42
84120672 ACATGGCATC
* *
84120682 GGCATCGATATGTGATTTCATGTAAGACCAT-GTTGGGAC-AT
1 GGCATCGATATGTGATCTCATGTAAGACCATAGCTGGG-CTAT
* * *
84120723 GGCATC-ATTATGAGACCTCGTGTAAGACCATAGCTGGGCTATT
1 GGCATCGA-TATGTGATCTCATGTAAGACCATAGCTGGGCTA-T
* * *
84120766 GGCATCGATATGTGATCTCTTGTAAGACCATATCTGGGATAT
1 GGCATCGATATGTGATCTCATGTAAGACCATAGCTGGGCTAT
84120808 GGCA
1 GGCA
84120812 GTAGCATCTT
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 26 0.35
42 11 0.15
43 35 0.47
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
GGCATCGATATGTGATCTCATGTAAGACCATAGCTGGGCTAT
Found at i:84124343 original size:13 final size:13
Alignment explanation
Indices: 84124325--84124350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84124315 ATGTTCAGTA
84124325 TTGTCTGGTAACG
1 TTGTCTGGTAACG
84124338 TTGTCTGGTAACG
1 TTGTCTGGTAACG
84124351 CCTTATAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (13 bp):
TTGTCTGGTAACG
Done.