Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 282 of 345
Found at i:84126586 original size:11 final size:11
Alignment explanation
Indices: 84126558--84126593 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
84126548 AATTTATGTT
*
84126558 TTAGTTTTAAA
1 TTAGTTTTTAA
84126569 CTTAGTTTTTAA
1 -TTAGTTTTTAA
84126581 TTAGTTTTTAA
1 TTAGTTTTTAA
84126592 TT
1 TT
84126594 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61
Consensus pattern (11 bp):
TTAGTTTTTAA
Found at i:84135615 original size:27 final size:28
Alignment explanation
Indices: 84135559--84135628 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
84135549 AAATTTGTAC
84135559 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
84135587 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
84135614 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
84135629 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:84143537 original size:27 final size:28
Alignment explanation
Indices: 84143481--84143550 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
84143471 AAATTTGTAC
84143481 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
84143509 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
84143536 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
84143551 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:84151299 original size:43 final size:43
Alignment explanation
Indices: 84151246--84151401 Score: 285
Period size: 43 Copynumber: 3.6 Consensus size: 43
84151236 GCTGGTATTA
*
84151246 TATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
84151289 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
84151332 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
84151375 TATTCGGGCCTTCGTGCCTAGCAGGCT
1 TATTCGGGCCTTCGTGCCTAGCAGGCT
84151402 ATGATGCTGG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.11, C:0.26, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:84151439 original size:45 final size:45
Alignment explanation
Indices: 84151246--84151479 Score: 180
Period size: 43 Copynumber: 5.3 Consensus size: 45
84151236 GCTGGTATTA
* ** * *
84151246 TATTCGGGCCTTCGTGCCTAGCAGGCT-TCTTGCCGGTGATG-T-G
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGA-GATAC
* * ** * * *
84151289 TATTCAGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATAT-G
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
* ** * *
84151332 TATTCGGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATG-T-G
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGA-GATAC
* *
84151375 TATTCGGGCCTTCGTGCCTAGCAGGCTATGATGCTGGTG-GAATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAG-ATAC
* *
84151420 TATTCGGGCCTTTGAGCCTAGCATGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
*
84151465 TATTCGGGCTTTCGA
1 TATTCGGGCCTTCGA
84151480 TATCAGGCCT
Statistics
Matches: 169, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.01
43 106 0.63
44 9 0.05
45 52 0.31
46 1 0.01
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.31
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
Found at i:84155621 original size:26 final size:26
Alignment explanation
Indices: 84155592--84155642 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
84155582 AAGAGTCACA
*
84155592 AACCAATCCTGAACCAGATGTTGACC
1 AACCAATCCTGAACCAGATGCTGACC
*
84155618 AACCAATCCTGAACTAGATGCTGAC
1 AACCAATCCTGAACCAGATGCTGAC
84155643 TTAGAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (26 bp):
AACCAATCCTGAACCAGATGCTGACC
Found at i:84165678 original size:47 final size:48
Alignment explanation
Indices: 84165557--84165688 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
84165547 GTGCGAATGA
*
84165557 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAAAGAGAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAAAGAGAAGT
* * ** ** *
84165605 TACCTCGATTTGGCTACGAGTTATGGTATAGGTACTTC-GGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAAAGAGAAGT
84165652 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT
84165689 ATTGATTGTG
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 39 0.54
48 33 0.46
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAAAGAGAAGT
Found at i:84168626 original size:49 final size:49
Alignment explanation
Indices: 84168549--84168733 Score: 253
Period size: 49 Copynumber: 3.7 Consensus size: 49
84168539 ATCAAGATTC
* *
84168549 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
84168598 GTGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
84168647 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
84168696 GTGAAAGTGTATATATATATGTGGTAAAGCCGAATGGC
1 GTGAAA--ATATATATATATGTGATAAGGCCTAATGGC
84168734 TAATGTGAAT
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 97 0.80
51 25 0.20
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:84168665 original size:98 final size:99
Alignment explanation
Indices: 84168549--84168733 Score: 282
Period size: 98 Copynumber: 1.9 Consensus size: 99
84168539 ATCAAGATTC
* *
84168549 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA-ATATATGTA
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGATATATATA
* *
84168613 TATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 TATGTGATAAAGCCGAATGGCCGATGTGGTGAAT
* * *
84168647 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-ATATATAT
*
84168712 ATATGTGGTAAAGCCGAATGGC
65 ATATGTGATAAAGCCGAATGGC
84168734 TAATGTGAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 52 0.68
100 25 0.32
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (99 bp):
GTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGATATATATA
TATGTGATAAAGCCGAATGGCCGATGTGGTGAAT
Found at i:84171898 original size:40 final size:40
Alignment explanation
Indices: 84171854--84171968 Score: 92
Period size: 40 Copynumber: 3.1 Consensus size: 40
84171844 AGAGAGCTAC
84171854 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
* * * *
84171894 GTG-AAGACACCATGTAGAC-AAG-AG-A-GC-T-A---C--
1 GTGAAAGATA-AATGTAG-CTAGGTCGCATGCGTGATTCCAA
84171924 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
84171964 GTGAA
1 GTGAA
84171969 GGACACCATG
Statistics
Matches: 53, Mismatches: 8, Indels: 28
0.60 0.09 0.31
Matches are distributed among these distances:
29 1 0.02
30 11 0.21
31 6 0.11
32 2 0.04
33 2 0.04
34 1 0.02
35 2 0.04
36 1 0.02
37 2 0.04
38 2 0.04
39 6 0.11
40 16 0.30
41 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (40 bp):
GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
Found at i:84171922 original size:70 final size:71
Alignment explanation
Indices: 84171833--84171995 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
84171823 GAGATGTATC
84171833 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84171898 A-GACA
66 AGGACA
84171903 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84171968 AGGACA
66 AGGACA
84171974 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84171996 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 66 0.72
71 26 0.28
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84178480 original size:41 final size:41
Alignment explanation
Indices: 84178435--84178552 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
84178425 TGAAAGATAA
84178435 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
84178476 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84178506 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84178547 ATGTAG
1 ATGTAG
84178553 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:84178491 original size:71 final size:71
Alignment explanation
Indices: 84178403--84178566 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84178393 GAGATGTATC
84178403 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84178468 AGGACA
66 AGGACA
84178474 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84178539 AGGACA
66 AGGACA
84178545 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84178567 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84186793 original size:26 final size:26
Alignment explanation
Indices: 84186764--84186818 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
84186754 TATTTATTTA
84186764 TGGTGTTAACCCACTTGTGTTTAAGT
1 TGGTGTTAACCCACTTGTGTTTAAGT
* *
84186790 TGGTGTTAATCCACTTGTGTTTGAGT
1 TGGTGTTAACCCACTTGTGTTTAAGT
84186816 TGG
1 TGG
84186819 ATTACACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.16, C:0.13, G:0.27, T:0.44
Consensus pattern (26 bp):
TGGTGTTAACCCACTTGTGTTTAAGT
Found at i:84188164 original size:21 final size:21
Alignment explanation
Indices: 84188126--84188165 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
84188116 TACTTAAGGT
** *
84188126 CTCGAGACTTGTCCTTAGAGG
1 CTCGAGACTTAACATTAGAGG
84188147 CTCGAGACTTAACATTAGA
1 CTCGAGACTTAACATTAGA
84188166 AATGTATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (21 bp):
CTCGAGACTTAACATTAGAGG
Found at i:84188531 original size:22 final size:23
Alignment explanation
Indices: 84188501--84188544 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
84188491 TATCGATCAA
*
84188501 ATCACAACATATAGCATACATTT
1 ATCACAACATAAAGCATACATTT
*
84188524 ATCA-AACATAAAGCATTCATT
1 ATCACAACATAAAGCATACATT
84188545 CTCATAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (23 bp):
ATCACAACATAAAGCATACATTT
Found at i:84190654 original size:46 final size:45
Alignment explanation
Indices: 84190594--84190768 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
84190584 ACATCTCGTA
84190594 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATATCGAG
* * * * * * * *
84190640 GCCAAAGCATGTCCCAGACATGTCTTAAACTAGCACTCCTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCATATCGAG
* *
84190686 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-ATCGAG
* *
84190734 GTCGATGCATGTCCCAGACATGTCTTATACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
84190769 CACACAAGAG
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
46 53 0.51
47 29 0.28
48 20 0.19
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCATATCGAG
Found at i:84190714 original size:94 final size:92
Alignment explanation
Indices: 84190594--84190767 Score: 244
Period size: 94 Copynumber: 1.9 Consensus size: 92
84190584 ACATCTCGTA
84190594 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACAT-ATCGAGGCCAAAGCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GAGGCCAAAGCATGTCCCAG
84190657 ACATGTCTTAAACTAGCACTCCTCTCAAT
64 ACATGTCTTAAACTAGCACTCCTCTCAAT
* * * * *
84190686 GCCGATGACATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCCAAAGCATGTCCCAG
*
84190751 ACATGTCTTATACTAGC
64 ACATGTCTTAAACTAGC
84190768 TCACACAAGA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 7 0.10
93 14 0.19
94 48 0.67
95 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCAAAGCATGTCCCAGAC
ATGTCTTAAACTAGCACTCCTCTCAAT
Found at i:84193116 original size:48 final size:48
Alignment explanation
Indices: 84193044--84193173 Score: 215
Period size: 48 Copynumber: 2.7 Consensus size: 48
84193034 CTCACACAAT
* * *
84193044 AAGTACCTATACCATGGCCCGAAGCAAAATTAAGGTAACTTATCTCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
*
84193092 GAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
*
84193140 AAATACCTATACCATGGCCCGAAGCCAAATCAAG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAG
84193174 TTATGACTCG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.19
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
Found at i:84197981 original size:22 final size:23
Alignment explanation
Indices: 84197951--84197994 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
84197941 TACTGATCAA
*
84197951 ATCACAACATATAGCATACATTT
1 ATCACAACATAAAGCATACATTT
*
84197974 ATCA-AACATAAAGCATTCATT
1 ATCACAACATAAAGCATACATT
84197995 CTCATAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (23 bp):
ATCACAACATAAAGCATACATTT
Found at i:84199662 original size:48 final size:48
Alignment explanation
Indices: 84199606--84199735 Score: 215
Period size: 48 Copynumber: 2.7 Consensus size: 48
84199596 CTCGCACAAT
* *
84199606 AAGTACCTATACCATGGCCCGAAGCAAAATCAAGGTAACTTATCTCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
84199654 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
* * *
84199702 AAATACCTATACCATGGACCGAAACCAAATCAAG
1 AAGTACCTATACCATGGCCCGAAGCCAAATCAAG
84199736 TTATGACTCG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.18
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCTCCG
Found at i:84202257 original size:10 final size:11
Alignment explanation
Indices: 84202238--84202270 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
84202228 TTGATATGTT
84202238 AATGAAGAGAA
1 AATGAAGAGAA
84202249 AAT-AAGAGAA
1 AATGAAGAGAA
*
84202259 AGTGAAGAGAA
1 AATGAAGAGAA
84202270 A
1 A
84202271 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:84202423 original size:23 final size:22
Alignment explanation
Indices: 84202383--84202426 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
84202373 CATAAATTGT
84202383 AAAAATTGAATTAGAAGATTAA
1 AAAAATTGAATTAGAAGATTAA
84202405 AAAAATATGGAATTA-AAGATTA
1 AAAAAT-T-GAATTAGAAGATTA
84202427 TTGAGTCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 8 0.40
24 6 0.30
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAAATTGAATTAGAAGATTAA
Found at i:84203987 original size:46 final size:46
Alignment explanation
Indices: 84203935--84204162 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
84203925 AGTGTGCTCT
84203935 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
84203981 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
84204027 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **** *
84204073 GTGATATGAAACAAATAAGACCATGGTTGAAAGATACCATGGAAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
84204119 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
84204163 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:84216151 original size:47 final size:47
Alignment explanation
Indices: 84216082--84216177 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
84216072 TTAAGTTAAA
84216082 TCCATTCACTCAATACAACCCTATTTTATCTCATTGTCACCATTGTG
1 TCCATTCACTCAATACAACCCTATTTTATCTCATTGTCACCATTGTG
84216129 TCCATTCACTCAATACAACCCTATTTTATCTCATTGTCACCATTGTG
1 TCCATTCACTCAATACAACCCTATTTTATCTCATTGTCACCATTGTG
84216176 TC
1 TC
84216178 TTCTTAATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.25, C:0.30, G:0.06, T:0.39
Consensus pattern (47 bp):
TCCATTCACTCAATACAACCCTATTTTATCTCATTGTCACCATTGTG
Found at i:84220040 original size:49 final size:48
Alignment explanation
Indices: 84219974--84220284 Score: 160
Period size: 46 Copynumber: 6.6 Consensus size: 48
84219964 CATCAAAGTA
* *
84219974 GATGTCATATCCTAGACAGGTCTTACACTAACTTTCATATATCGAGGCC
1 GATG-CATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAGGCC
* * ** * * *
84220023 GATGTCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTC
1 GATG-CATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAG-GCC
* * * * *
84220072 GATGCCATGTCCTAGACA-GTCTTACACTGAC--ACACA-A-C-AAGCT
1 GATG-CATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAGGCC
* * * * * * *
84220115 AATGTCATGTCCTAGATAAGTATTACACTAACTTGT-ATATTTCCAGGCT
1 GATG-CATGTCCTAGACATGTCTTACACTAACTT-TCATATATCGAGGCC
* * * * * * * *
84220164 GATGCATGTCCCAAACATGTCTTACACT-A-GTTCTTGTCTCAATGCC
1 GATGCATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAGGCC
* * ** * * *
84220210 GACGCATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GTGGCT
1 GATGCATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAGGCC
84220256 GATGCATGTCCTAGACATGTCTTACACTA
1 GATGCATGTCCTAGACATGTCTTACACTA
84220285 GCACACATAT
Statistics
Matches: 197, Mismatches: 53, Indels: 27
0.71 0.19 0.10
Matches are distributed among these distances:
43 16 0.08
44 12 0.06
45 2 0.01
46 66 0.34
47 2 0.01
48 36 0.18
49 63 0.32
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCTAGACATGTCTTACACTAACTTTCATATATCGAGGCC
Found at i:84222288 original size:43 final size:43
Alignment explanation
Indices: 84222240--84222384 Score: 231
Period size: 43 Copynumber: 3.4 Consensus size: 43
84222230 TAGCAAGATG
84222240 TGATTATGTGTAAGACAATGTCTAGGACATTGGCATCATTATT
1 TGATTATGTGTAAGACAATGTCTAGGACATTGGCATCATTATT
84222283 TGATTATGTGTAAGACAATGTCTAGGACATTGGCATCATTATT
1 TGATTATGTGTAAGACAATGTCTAGGACATTGGCATCATTATT
* * *
84222326 TGATTATGTGTAAGA-ACATGTCTGGGACATTAGCATCGTTATT
1 TGATTATGTGTAAGACA-ATGTCTAGGACATTGGCATCATTATT
84222369 TGATT-TCGTGTAAGAC
1 TGATTAT-GTGTAAGAC
84222385 CATAGTTGGG
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
42 2 0.02
43 94 0.98
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (43 bp):
TGATTATGTGTAAGACAATGTCTAGGACATTGGCATCATTATT
Found at i:84228967 original size:90 final size:90
Alignment explanation
Indices: 84228842--84229005 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
84228832 CTCTGACTAA
* * * * *
84228842 TTGGTGTCACAGATTAACTGGGTACCAATTGGGTTAGAAAATTAT-AGAAATGTCTTTTCATTTT
1 TTGGTGTCACAGATTAACCGAGTACCAATTGGGTTAGAAAATTATGA-AAATGTCCTTCCATATT
84228906 TAAAATGAGTTAAATCCTTGAATAAG
65 TAAAATGAGTTAAATCCTTGAATAAG
* *
84228932 TTGGTGTCACA-AGTTAACCGAGTATCAACTT-GGTTAGAGAATTATGAAAATGTCCTTCCATAT
1 TTGGTGTCACAGA-TTAACCGAGTACCAA-TTGGGTTAGAAAATTATGAAAATGTCCTTCCATAT
84228995 TTAAAATGAGT
64 TTAAAATGAGT
84229006 CATATTATTC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
89 1 0.02
90 60 0.94
91 3 0.05
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (90 bp):
TTGGTGTCACAGATTAACCGAGTACCAATTGGGTTAGAAAATTATGAAAATGTCCTTCCATATTT
AAAATGAGTTAAATCCTTGAATAAG
Found at i:84238990 original size:27 final size:27
Alignment explanation
Indices: 84238959--84239020 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
84238949 TTACCTTATC
84238959 TTTTAATCATATTGTTG-GAGGTTCGAT
1 TTTTAATCATATTGTTGCG-GGTTCGAT
*
84238986 TTTTAATCATATTGTTGCGTGTTCGAT
1 TTTTAATCATATTGTTGCGGGTTCGAT
84239013 TTTTAATC
1 TTTTAATC
84239021 GGGTAGTTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.52
Consensus pattern (27 bp):
TTTTAATCATATTGTTGCGGGTTCGAT
Found at i:84239773 original size:20 final size:21
Alignment explanation
Indices: 84239742--84239780 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
84239732 TACTGTTAAT
*
84239742 ATTTAGTTTTTTTTTTCATAA
1 ATTTAGTTTTTTTTATCATAA
84239763 ATTTA-TTTTTTTTATCAT
1 ATTTAGTTTTTTTTATCAT
84239781 TTTATTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (21 bp):
ATTTAGTTTTTTTTATCATAA
Found at i:84245708 original size:20 final size:20
Alignment explanation
Indices: 84245683--84245740 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
84245673 GCCTGGGTGT
84245683 ATTGGGACATGCCCGTGTGC
1 ATTGGGACATGCCCGTGTGC
84245703 ATTGGGACATGCCCGTGTGC
1 ATTGGGACATGCCCGTGTGC
*
84245723 ATTGGGACACGCCCGTGT
1 ATTGGGACATGCCCGTGT
84245741 CCCTTACCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (20 bp):
ATTGGGACATGCCCGTGTGC
Found at i:84245934 original size:48 final size:49
Alignment explanation
Indices: 84245881--84245976 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 49
84245871 CCTAGACATT
* *
84245881 CTATTTATGACGTCGTCATCCATCTAGGGGCACACGGCCTA-GCACACG
1 CTATTTATGACGTCATCATCCATCTAGGGGCACACGGCCAAGGCACACG
*
84245929 CTATTTATGATGTCATCATCCATCTAGGGGCACACGGCCAAGGCACAC
1 CTATTTATGACGTCATCATCCATCTAGGGGCACACGGCCAAGGCACAC
84245977 ACCCGTGTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
48 38 0.86
49 6 0.14
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (49 bp):
CTATTTATGACGTCATCATCCATCTAGGGGCACACGGCCAAGGCACACG
Found at i:84249256 original size:60 final size:60
Alignment explanation
Indices: 84249159--84249282 Score: 241
Period size: 60 Copynumber: 2.1 Consensus size: 60
84249149 AAATATCATG
84249159 GAAT-ATGCCATTGAACATATGGAAGTGCATGATTGTTTAAGGGTGACCAATGGATTGGA
1 GAATAATGCCATTGAACATATGGAAGTGCATGATTGTTTAAGGGTGACCAATGGATTGGA
84249218 GAATAATGCCATTGAACATATGGAAGTGCATGATTGTTTAAGGGTGACCAATGGATTGGA
1 GAATAATGCCATTGAACATATGGAAGTGCATGATTGTTTAAGGGTGACCAATGGATTGGA
84249278 GAATA
1 GAATA
84249283 GCCTCCAAAG
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 4 0.06
60 60 0.94
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (60 bp):
GAATAATGCCATTGAACATATGGAAGTGCATGATTGTTTAAGGGTGACCAATGGATTGGA
Found at i:84256702 original size:29 final size:28
Alignment explanation
Indices: 84256668--84256770 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
84256658 TACTCAATCA
*
84256668 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
84256697 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
84256726 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
84256755 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84256771 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:84262084 original size:14 final size:14
Alignment explanation
Indices: 84262065--84262094 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84262055 ACAGATGACC
84262065 TTATATGATGATGG
1 TTATATGATGATGG
84262079 TTATATGATGATGG
1 TTATATGATGATGG
84262093 TT
1 TT
84262095 CCATTTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (14 bp):
TTATATGATGATGG
Found at i:84268233 original size:49 final size:49
Alignment explanation
Indices: 84268123--84268233 Score: 177
Period size: 49 Copynumber: 2.3 Consensus size: 49
84268113 AAATCAACCC
* *
84268123 GATGTCGCGACATCACTAACTTGTGTCATGACATGAGTAGTCTTCTAGG
1 GATGTCGCGACATCACTAACCTGTGTCACGACATGAGTAGTCTTCTAGG
* *
84268172 GATGTTGTGACATCACTAACCTGTGTCACGACATGAGTAGTCTTCTAGG
1 GATGTCGCGACATCACTAACCTGTGTCACGACATGAGTAGTCTTCTAGG
*
84268221 GATGTCACGACAT
1 GATGTCGCGACAT
84268234 GAAACCATGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 55 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (49 bp):
GATGTCGCGACATCACTAACCTGTGTCACGACATGAGTAGTCTTCTAGG
Found at i:84273618 original size:24 final size:24
Alignment explanation
Indices: 84273586--84273635 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
84273576 GTTGAATAAG
84273586 ATGTTTGTATAATGAATTAATGAA
1 ATGTTTGTATAATGAATTAATGAA
84273610 ATGTTTGTATAATGAATTAATGAA
1 ATGTTTGTATAATGAATTAATGAA
84273634 AT
1 AT
84273636 CAAATACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (24 bp):
ATGTTTGTATAATGAATTAATGAA
Found at i:84278571 original size:3 final size:3
Alignment explanation
Indices: 84278563--84278587 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
84278553 TTTGGAAGAT
84278563 CCA CCA CCA CCA CCA CCA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA C
84278588 AGTTACCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:84282465 original size:25 final size:25
Alignment explanation
Indices: 84282431--84282483 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
84282421 ATTTACTACC
84282431 TATAGCTACTAGAACTTAACTTTTG
1 TATAGCTACTAGAACTTAACTTTTG
*
84282456 TATAGCTACTAGAGCTTAACTTTTG
1 TATAGCTACTAGAACTTAACTTTTG
84282481 TAT
1 TAT
84282484 TTTATGCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (25 bp):
TATAGCTACTAGAACTTAACTTTTG
Found at i:84286421 original size:33 final size:33
Alignment explanation
Indices: 84286384--84286529 Score: 109
Period size: 32 Copynumber: 4.5 Consensus size: 33
84286374 TACCCAAATG
*
84286384 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGTAATGTACACTTTGTGT
* * * *
84286417 GTAC-ACTTGGAAAGGTTATGTATACTTAGTGT
1 GTACAACTTGAAAAGGTAATGTACACTTTGTGT
* * * * *
84286449 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTAATGTACACTTTGTGT
* * * ***
84286482 GTACCACTTGGAAAGG-AATGTACACCTCAAGT
1 GTACAACTTGAAAAGGTAATGTACACTTTGTGT
*
84286514 GTACAACTGGAAAAGG
1 GTACAACTTGAAAAGG
84286530 AAAGGTCCAT
Statistics
Matches: 90, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
32 52 0.58
33 37 0.41
34 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTAATGTACACTTTGTGT
Found at i:84286527 original size:65 final size:63
Alignment explanation
Indices: 84286384--84286535 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 63
84286374 TACCCAAATG
** * * * *
84286384 GTACAACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGGAAAGGTTATGTATACTTAGT
1 GTACAACTTGAAAAGGAAAGGTACACTTTGTGTGTACACTTGGAAAGGTAATGTACACTAAGT
* * *
84286447 GTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTTGGAAAGG-AATGTACACCTCA
1 GTACAAC-T-TGAAAAGGAAAGGTACACTTTGTGTGTA-CACTTGGAAAGGTAATGTACA-CT-A
84286511 AGT
61 AGT
*
84286514 GTACAACTGGAAAAGGAAAGGT
1 GTACAACTTGAAAAGGAAAGGT
84286536 CCATCGGAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
63 5 0.07
64 1 0.01
65 43 0.60
66 15 0.21
67 8 0.11
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (63 bp):
GTACAACTTGAAAAGGAAAGGTACACTTTGTGTGTACACTTGGAAAGGTAATGTACACTAAGT
Found at i:84288903 original size:17 final size:17
Alignment explanation
Indices: 84288881--84288914 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
84288871 AGTGTTGGAA
*
84288881 GTGTGGGAAACATGATG
1 GTGTGGGAAACACGATG
84288898 GTGTGGGAAACACGATG
1 GTGTGGGAAACACGATG
84288915 CCAAAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.41, T:0.21
Consensus pattern (17 bp):
GTGTGGGAAACACGATG
Found at i:84292676 original size:2 final size:2
Alignment explanation
Indices: 84292669--84292705 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
84292659 AAATGGATGT
84292669 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84292706 TTACTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:84292744 original size:3 final size:3
Alignment explanation
Indices: 84292736--84292796 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
84292726 AGATATTTAC
*
84292736 TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84292784 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
84292797 CTAATAATTG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:84294875 original size:20 final size:20
Alignment explanation
Indices: 84294849--84294906 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
84294839 TGCCCATGGG
* *
84294849 CAGGCCATACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
* *
84294869 GAGGCCACACGGGCGTGTCC
1 CAGGCCACACGGGCATGTCC
*
84294889 CAGGCCACACAGGCATGT
1 CAGGCCACACGGGCATGT
84294907 GCCCCTATCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.14
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:84295612 original size:16 final size:17
Alignment explanation
Indices: 84295580--84295612 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
84295570 TGAATTCTAG
*
84295580 TAGTTATAAGGATTAAA
1 TAGTTATAAGAATTAAA
84295597 TAGTTAT-AGAATTAAA
1 TAGTTATAAGAATTAAA
84295613 AGAAAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
TAGTTATAAGAATTAAA
Found at i:84296732 original size:33 final size:33
Alignment explanation
Indices: 84296695--84296808 Score: 106
Period size: 33 Copynumber: 3.5 Consensus size: 33
84296685 TACCCAAATG
*
84296695 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
* * *
84296728 GTAC-ACTTGGAAAGGTTAGGTATACTTAGTGT
1 GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
* * ** *
84296760 ATACAA-TATAAAAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTTAGGTACACTTTGTGT
* *
84296793 GTACCACTTGGAAAGG
1 GTACAACTTGAAAAGG
84296809 GATGTACACC
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
32 28 0.44
33 35 0.55
34 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTTAGGTACACTTTGTGT
Found at i:84318706 original size:27 final size:24
Alignment explanation
Indices: 84318674--84318725 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 24
84318664 CAAAATAATT
84318674 TTCCAAAATTCTAAATATTTATAAAAA
1 TTCCAAAATT-TAAAT-TTTA-AAAAA
*
84318701 TTCCAAAATTTATATTTTAAAAAA
1 TTCCAAAATTTAAATTTTAAAAAA
84318725 T
1 T
84318726 ATATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 6 0.25
25 4 0.17
26 4 0.17
27 10 0.42
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (24 bp):
TTCCAAAATTTAAATTTTAAAAAA
Found at i:84318711 original size:18 final size:19
Alignment explanation
Indices: 84318678--84318714 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
84318668 ATAATTTTCC
*
84318678 AAAATTCTAAATATTTATA
1 AAAATTCCAAATATTTATA
84318697 AAAATTCCAAA-ATTTATA
1 AAAATTCCAAATATTTATA
84318715 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCCAAATATTTATA
Found at i:84319288 original size:2 final size:2
Alignment explanation
Indices: 84319275--84319310 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
84319265 AACTGAACCA
*
84319275 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84319311 TTGTAATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:84323597 original size:22 final size:23
Alignment explanation
Indices: 84323559--84323602 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
84323549 ACTAAAAAAG
84323559 AATTTAAGGAAATTTTTTTAAAC
1 AATTTAAGGAAATTTTTTTAAAC
84323582 AATTTAAGG-AATTTTTTTAAA
1 AATTTAAGGAAATTTTTTTAAA
84323603 TCTGAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (23 bp):
AATTTAAGGAAATTTTTTTAAAC
Found at i:84324156 original size:15 final size:16
Alignment explanation
Indices: 84324125--84324157 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
84324115 ATATTTAGTC
84324125 ATATAATAAATTATTA
1 ATATAATAAATTATTA
84324141 ATATAATAAA-TATTA
1 ATATAATAAATTATTA
84324156 AT
1 AT
84324158 TTATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:84324185 original size:20 final size:20
Alignment explanation
Indices: 84324128--84324186 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
84324118 TTTAGTCATA
**
84324128 TAATAAATTA-TTAATATAA
1 TAATAAATTATTTAATATTT
* *
84324147 TAA-ATATTAATTTATTATTT
1 TAATAAATT-ATTTAATATTT
84324167 TAATAAATTATTTAATATTT
1 TAATAAATTATTTAATATTT
84324187 CAGTTTTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
18 4 0.13
19 4 0.13
20 19 0.61
21 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATAAATTATTTAATATTT
Found at i:84324212 original size:13 final size:14
Alignment explanation
Indices: 84324194--84324235 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
84324184 TTTCAGTTTT
84324194 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
84324207 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
84324222 ATTTTAAATAATAT
1 ATTTT-AATAATAT
84324236 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:84324220 original size:16 final size:16
Alignment explanation
Indices: 84324198--84324234 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84324188 AGTTTTATTT
84324198 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
84324215 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
84324230 TAATA
1 TAATA
84324235 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:84324287 original size:15 final size:15
Alignment explanation
Indices: 84324253--84324323 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
84324243 ATATTATTGA
84324253 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
84324266 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
84324281 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
84324300 AAATATATTAATAAT
1 AAATATTTTAATAAT
*
84324315 AAATGTTTT
1 AAATATTTT
84324324 GTAGTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 18 0.40
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:84325067 original size:24 final size:22
Alignment explanation
Indices: 84325019--84325067 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
84325009 GATATTAATT
*
84325019 ATTTTAATAAAAATATATTACA
1 ATTTTAATAAAAATATAATACA
*
84325041 ATTTTAATAAAAAATTATAATATA
1 ATTTTAAT-AAAAA-TATAATACA
84325065 ATT
1 ATT
84325068 ATAACTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 8 0.35
23 5 0.22
24 10 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTAATAAAAATATAATACA
Found at i:84326686 original size:2 final size:2
Alignment explanation
Indices: 84326679--84326713 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
84326669 GATATTGATG
84326679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84326714 ATAATTGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84326995 original size:24 final size:23
Alignment explanation
Indices: 84326968--84327013 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
84326958 AATTAAAGCG
84326968 AAAAAAAAAAGGTTCATAATTTAT
1 AAAAAAAAAAGGTT-ATAATTTAT
* * *
84326992 AAAAATATAATGTTATAATTTA
1 AAAAAAAAAAGGTTATAATTTA
84327014 AAATTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (23 bp):
AAAAAAAAAAGGTTATAATTTAT
Found at i:84327749 original size:5 final size:5
Alignment explanation
Indices: 84327739--84327763 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
84327729 CTGTGTGTTC
84327739 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
84327764 CAAATTCGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:84329571 original size:3 final size:3
Alignment explanation
Indices: 84329558--84330632 Score: 294
Period size: 3 Copynumber: 356.0 Consensus size: 3
84329548 GTCTAAACAC
* * *
84329558 TAT TGT TAT TAT TAT TAT TAT TAT TCT T-T TTT TCA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* *
84329602 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA TAT TAA TAT TAGT GTA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT
* *
84329648 TAT TAT TTT TAT TAT ATAT GTAT GTA- TAT GTA- TACA TAT T-T ATAT
1 TAT TAT TAT TAT TAT -TAT -TAT -TAT TAT -TAT TA-T TAT TAT -TAT
* * *
84329693 ATAG TAT TAT T-T TAT TACCT TAT T-T TAA TAT TTT TAT TA- TAT TA-
1 -TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * *
84329737 TAT GCT T-T T-T GTAT T-T CAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
84329780 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * *
84329826 TAGT GTA- TAT TTT TAT TGT ATAT GTA- TACG TA- TAT ATAT T-T ATAT
1 TA-T -TAT TAT TAT TAT TAT -TAT -TAT TA-T TAT TAT -TAT TAT -TAT
* * * *
84329871 ATAG TAT TAT T-T T-T TAT TATT TAT TTT TAA TAT TTT TAT TA- TATT
1 -TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
84329916 TACT T-T TTT GTAT T-T CAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TA-T TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
84329961 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAGT GTA- TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT
* * * *
84330007 ATAT GTAT ATAT ATAT CT-T TA- TAT ATAG CAT TAT TTT TAAT TAC T-T
1 -TAT -TAT -TAT -TAT -TAT TAT TAT -TAT TAT TAT TAT T-AT TAT TAT
* * * * * *
84330053 TAT T-T TAA TAT TTT TAT TA- TAT TA- TAT TCGCT TTT TGT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT TAT
* * *
84330097 TAT TAT TAT TA- TATT TAT TAT TAT TAA TAA TAA TAGT GTA- TAT T-T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT
* * * *
84330142 TTT TAT TA- TAT GTGT ATAT GTAT ATAT T-T TA- TACA TAG TAT TAT
1 TAT TAT TAT TAT -TAT -TAT -TAT -TAT TAT TAT TA-T TAT TAT TAT
* * * * * ** *
84330186 T-T TCT AAT TAC T-T TAT T-T TAA TAT TTT TAT TA- TAT TAT GCT TGCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* *
84330231 TTT TGT TAT TGA- TAT TAT TAT TA- TATT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* *
84330276 TAT TAT TAT TAT TAA TAGT GTA- TAT TTT TAT TAT ATAT GTA- TAT GTAT
1 TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT
* * * * * * *
84330324 ATAT TTT TA- TACA TAG TAT TAT T-T TCT AAT TAC T-T TAT T-T TAA
1 -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * * *
84330367 TAT TTT TAT TA- TAT TAT GCT TGCT TTT TGT TGT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
* *
84330412 TAT TAT TAT TAA TAT TAGT GTA- TAT TTT TAT TAT ATAT GTA- TAT ATACT
1 TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TAT -TA-T
* * * * *
84330461 TA- TAT T-T ATACA TAC TAT TAT T-T TTT TAAT TAC T-T TAT TTT TAT
1 TAT TAT TAT -TA-T TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
* * ** * * *
84330505 TA- TAC TA- CAT T-T GCT T-T T-T GTAT T-T CAA TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * *
84330545 TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAAT GTAC TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT
* * *
84330591 TAT TAC TCT TAT T-T TCAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
84330633 CCTTTATTGT
Statistics
Matches: 806, Mismatches: 154, Indels: 224
0.68 0.13 0.19
Matches are distributed among these distances:
2 107 0.13
3 562 0.70
4 118 0.15
5 19 0.02
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:84329867 original size:178 final size:181
Alignment explanation
Indices: 84329570--84329989 Score: 613
Period size: 178 Copynumber: 2.3 Consensus size: 181
84329560 TTGTTATTAT
* * *
84329570 TATTATTATTATTCTTTTTTTCATATTATTATTATTATTATTATTATTATTATTATTATTAATAT
1 TATTATTATTATTATTATTAT--TATTATTATTATTATTATTATTATTATTATTATTATTAATAT
* *
84329635 TAATATTAGTGTATATTATTTTTATTATATATGTATGTATATGTATACATATTTATATATAGTAT
64 CAATATTAGTG-ATATTATTTTTATTATATA-GTATGTATACGTATACATATTTATATATAGTAT
84329700 TA-TTTTATTACCTTA-TTTTAATATTTTTATTATATTATA-TGCTTTTTGTATTTCAA
127 TATTTTTATTA-CTTATTTTTAATATTTTTATTATATT-TACT--TTTTTGTATTTCAA
*
84329756 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCA
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATATCA
* *
84329821 TATATTAGTG-TA-TATTTTTA-T-TGTA-TATGTATACGTATATATATTTATATATAGTATTAT
66 -ATATTAGTGATATTATTTTTATTATATAGTATGTATACGTATACATATTTATATATAGTATTA-
*
84329881 TTTTTATTATTTATTTTTAATATTTTTATTATATTTACTTTTTTGTATTTCAA
129 TTTTTATTACTTATTTTTAATATTTTTATTATATTTACTTTTTTGTATTTCAA
84329934 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
84329990 GTGTATATTT
Statistics
Matches: 220, Mismatches: 9, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
178 102 0.46
179 5 0.02
180 33 0.15
181 1 0.00
182 8 0.04
183 2 0.01
184 42 0.19
185 9 0.04
186 18 0.08
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (181 bp):
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATATCA
ATATTAGTGATATTATTTTTATTATATAGTATGTATACGTATACATATTTATATATAGTATTATT
TTTATTACTTATTTTTAATATTTTTATTATATTTACTTTTTTGTATTTCAA
Found at i:84329941 original size:160 final size:162
Alignment explanation
Indices: 84329767--84330445 Score: 665
Period size: 160 Copynumber: 4.3 Consensus size: 162
84329757 ATTATTATTA
*
84329767 TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCA-TA-TATTAGT
1 TTATTAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTATTATTAGT
* * *
84329830 GTATATTTTTATTGTATATGTATACGTATATATATTTATATATAGTATTATTTTTTATTA-TTTA
66 GTATATTTTTATTATATATGTATA--TATATATATTTATATATAGCATTATTTTTAATTACTTTA
*
84329894 TTTTTAATATTTTTATTATATT-TA-C-TTTTTTG
129 -TTTTAATATTTTTATTATATTATATCGCTTTTTG
*
84329926 -TATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
1 TTA-TT-AATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTATTATTA
*
84329990 GTGTATATTTTTATTATATATGTATATATATATCTTTATATATAGCATTATTTTTAATTACTTTA
64 GTGTATATTTTTATTATATATGTATATATATATATTTATATATAGCATTATTTTTAATTACTTTA
84330055 TTTTAATATTTTTATTATATTATATTCGCTTTTTG
129 TTTTAATATTTTTATTATATTATA-TCGCTTTTTG
* * * **
84330090 TTATTAATATTATTATTA-TATTTATTATTATTAATAATAATAGTGTA-TATT-TTTTTATTA-T
1 TTATTAATATTATTATTATTA-TTATTATTATTATTATTATTA-T-TATTATTATCATTATTATT
* * * * **
84330151 ATGTGTATA--TGTA-TATAT-T-T-TATACATAGTA-TTAT-T-T-TC-TAATTACT--TTA-T
63 A-GTGTATATTTTTATTATATATGTATATATATA-TATTTATATATAGCATTATTTTTAATTACT
* *
84330202 TT----TAATATTTTTATTATATTATGCTTGCTTTTTG
126 TTATTTTAATATTTTTATTATATTAT-ATCGCTTTTTG
* *
84330236 TTATTGATATTATTATTA-TA-T-TTATTATTATTATTATTATTATTA-T-T-ATTATTAATAGT
1 TTATTAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTATTATTAGT
* * *
84330295 GTATATTTTTATTATATATGTATATGTATATATTTTTATACATAGTATTATTTTCTAATTACTTT
66 GTATATTTTTATTATATATGTATA--TATATATATTTATATATAGCATTATTTT-TAATTACTTT
* *
84330360 ATTTTAATATTTTTATTATATTATGCTTGCTTTTTG
128 ATTTTAATATTTTTATTATATTAT-ATCGCTTTTTG
* * * *
84330396 TTGTTATTATTATTATTATTATTATTAATATTAGTGTA-TATTTTTATTAT
1 TTATTAATATTATTATTATTATTATTATTATTA-T-TATTATTATTATTAT
84330446 ATATGTATAT
Statistics
Matches: 436, Mismatches: 39, Indels: 84
0.78 0.07 0.15
Matches are distributed among these distances:
140 13 0.03
141 6 0.01
142 6 0.01
143 20 0.05
144 2 0.00
145 1 0.00
146 50 0.11
147 1 0.00
148 9 0.02
150 4 0.01
151 3 0.01
152 4 0.01
153 6 0.01
154 1 0.00
155 4 0.01
156 4 0.01
157 11 0.03
158 4 0.01
159 3 0.01
160 151 0.35
161 13 0.03
162 35 0.08
163 55 0.13
164 24 0.06
165 6 0.01
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (162 bp):
TTATTAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTATTATTAGT
GTATATTTTTATTATATATGTATATATATATATTTATATATAGCATTATTTTTAATTACTTTATT
TTAATATTTTTATTATATTATATCGCTTTTTG
Found at i:84330539 original size:136 final size:135
Alignment explanation
Indices: 84330256--84330564 Score: 383
Period size: 136 Copynumber: 2.3 Consensus size: 135
84330246 TATTATTATA
* * *
84330256 TTTATTATTATTATTATTATTATTATTATTATTAATAGTGTATATTTTTATTATATATGTATATG
1 TTTAATATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATA
* * * * *
84330321 TATATATTTTTATACATAGTATTATTTTCTAATTACTTTATTTTAATATTTTTATTATATTATGC
66 TATATATATTTATACATACTATTATTTTCTAATTACTTTATTTT-ATATTTATACTACATTATGC
84330386 TTGCTT
130 TTGCTT
** * *
84330392 TTTGTTGTTATTATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATA
1 TTTAATATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATA
*
84330457 TACT-TATATTTATACATACTATTATTTTTTTAATTACTTTATTTT-TA-TTATACTACATT-TG
66 TA-TATATATTTATACATACTATTA-TTTTCTAATTACTTTATTTTATATTTATACTACATTATG
**
84330518 CTTTTTGT
129 CTTGCT-T
* *
84330526 ATTTCAATATTATTACTATTATTTTTATTATTATTATTA
1 -TTT-AATATTATTATTATTATTATTATTATTATTATTA
84330565 TTATTATTAT
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
133 6 0.04
134 10 0.07
135 5 0.03
136 108 0.72
137 20 0.13
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (135 bp):
TTTAATATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATA
TATATATATTTATACATACTATTATTTTCTAATTACTTTATTTTATATTTATACTACATTATGCT
TGCTT
Found at i:84331083 original size:18 final size:17
Alignment explanation
Indices: 84331043--84331089 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
84331033 CTATTTCTTT
84331043 TATTA-TTTTATTAGAA
1 TATTATTTTTATTAGAA
* *
84331059 CATTATTTTTATTGTGAA
1 TATTATTTTTATT-AGAA
*
84331077 TATTATTGTTATT
1 TATTATTTTTATT
84331090 TTTATGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 4 0.16
17 7 0.28
18 14 0.56
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.60
Consensus pattern (17 bp):
TATTATTTTTATTAGAA
Found at i:84331907 original size:16 final size:15
Alignment explanation
Indices: 84331886--84331920 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
84331876 CAGCTCTAAG
*
84331886 TTTTTATTGTTTTAGT
1 TTTTTATAG-TTTAGT
84331902 TTTTTATAGTTTAGT
1 TTTTTATAGTTTAGT
84331917 TTTT
1 TTTT
84331921 AAATAAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.74
Consensus pattern (15 bp):
TTTTTATAGTTTAGT
Found at i:84334740 original size:22 final size:22
Alignment explanation
Indices: 84334715--84334759 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
84334705 ATTCATGACT
84334715 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
*
84334737 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
84334759 A
1 A
84334760 TTCATTGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (22 bp):
AACATTCATTCGTCATTTATTC
Found at i:84339746 original size:968 final size:968
Alignment explanation
Indices: 84336717--84340597 Score: 7735
Period size: 968 Copynumber: 4.0 Consensus size: 968
84336707 TCATGGGATT
84336717 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
1 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
84336782 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
66 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
84336847 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
131 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
84336912 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
196 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
84336977 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
261 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
84337042 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
326 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
84337107 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
391 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
84337172 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
456 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
84337237 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
521 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
84337302 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
586 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
84337367 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
651 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
84337432 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
716 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
84337497 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
781 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
84337562 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
846 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
84337627 TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
911 TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
84337685 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
1 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
84337750 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
66 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
84337815 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAAGA
131 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGC-AAAAAAAGA
84337880 GCAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAG
195 GCAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAG
84337945 TACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGA
260 TACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGA
84338010 AATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGAT
325 AATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGAT
84338075 GCAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTG
390 GCAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTG
84338140 AGACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAG
455 AGACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAG
84338205 TTCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGT
520 TTCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGT
84338270 ATTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTT
585 ATTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTT
84338335 ACGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAAT
650 ACGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAAT
84338400 TTTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATAT
715 TTTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATAT
84338465 CACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATG
780 CACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATG
84338530 TCATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCT
845 TCATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCT
84338595 ATTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
910 ATTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
84338654 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
1 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
84338719 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
66 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
84338784 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
131 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
84338849 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
196 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
84338914 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
261 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
84338979 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
326 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
84339044 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
391 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
84339109 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
456 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
84339174 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
521 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
84339239 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
586 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
84339304 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
651 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
84339369 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
716 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
84339434 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
781 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
84339499 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
846 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
84339564 TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
911 TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
84339622 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
1 AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
84339687 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
66 GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
84339752 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
131 AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
84339817 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
196 CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
84339882 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
261 ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
84339947 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
326 ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
84340012 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
391 CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
84340077 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
456 GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
84340142 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
521 TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
84340207 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
586 TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
84340272 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
651 CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
84340337 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
716 TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
84340402 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
781 ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
84340467 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
846 CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
*
84340532 TTAAGAGCATTCGATGGAACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
911 TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
84340590 AAGTGGGC
1 AAG-GGGC
84340598 CCCTATATAT
Statistics
Matches: 2910, Mismatches: 1, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
968 1938 0.67
969 972 0.33
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (968 bp):
AAGGGGCATGACATCCAGTCTTGTGAAGGATTCAGAAAATTACTTCAAGACATGATGGACAACAA
GGAAGTCGAGATCTTTAACAAAATGAAAGAGGCCGATGAAGGAGAAGTATGCACTTCTGATAATC
AATCATCGGATTTCCCTTATAGTGCCGATCGACCATTGGTGATTTATTAAGATGCAAAAAAAGAG
CAAGTGAAACCAAAGATGATAATTGAAGTACCATCTCCTTTCCCTTACAAAGACAACAAGACAGT
ACCATGGAAATATGATGTCAACATTATCATACCTGAAGGTGAAAAATCCAAAGTCACGACCGGAA
ATGTTGGTGAAGTAGGACACTTCACCCGCAGCGAGAGGTGTTATTCTAAAGTGGTCGAACCGATG
CAGAAGACTAATGACTTGAAGCAGAAAGGAAAGGCACTGATGCATGAGGCCGAGGTTGAACTTGA
GACTCCGCCCGAACAAGAAGTTAAAAGGCCTGTGAATGAAGAGGAAGCACATGGATTCTTGAAGT
TCATCAAGCATAGTGAATATAACGTCGTGGAATAGTTAAGCAAACAACCGGCACGAATCTCGGTA
TTATCCCTACTATTGAATTCAGAACCACATCAGAATGCTCTGCTGAAAGTGTTAAATCAAGCTTA
CGTGGCAAACAATATATCTGTCGAAAAACTTGATAGGTGGGTGAATAACCTGAACGCGGATAATT
TTATTTCTTTCAGTGATGATGAAATACCACCAAATGGTAGGGGCTCCGTAAAAGCATTACATATC
ACAACCCGTTGCAAGGGTTATATAATACCAAATATGCTCATTGATAACGGGTCAGCACTCAATGT
CATGCCTTTGGCCACGCTTTCTAGAATTCCAATTGATATATCTTATTTGAGGCCTTGTCACTCTA
TTAAGAGCATTCGATGGCACAATACGAGAAGTCATGGGAAAAATTGAAATTCCTCTAA
Found at i:84346030 original size:75 final size:74
Alignment explanation
Indices: 84345932--84346172 Score: 310
Period size: 75 Copynumber: 3.2 Consensus size: 74
84345922 TACTCAGATG
*
84345932 TTTTAATTTCTGTCTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGGTCACA
1 TTTTAATTTCTGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCACA
84345996 TGCTGAGGTA
65 TGCTGAGGTA
* *
84346006 TTTTCAATTTTTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG--ACA
1 TTTT-AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCACA
* * *
84346069 CGTTGAAGTA
65 TGCTGAGGTA
* *
84346079 GTTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGGCTC
1 -TTTTAATTTCTGTT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-TC
84346143 ACATGCTGAGGTA
62 ACATGCTGAGGTA
*
84346156 TTTTTAATTTTTGTTTT
1 -TTTTAATTTCTGTTTT
84346173 TTAATTTTCG
Statistics
Matches: 143, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
73 19 0.13
74 16 0.11
75 84 0.59
76 1 0.01
77 23 0.16
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (74 bp):
TTTTAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCACAT
GCTGAGGTA
Found at i:84346289 original size:86 final size:86
Alignment explanation
Indices: 84346098--84346471 Score: 346
Period size: 86 Copynumber: 4.4 Consensus size: 86
84346088 TCTGTTCATC
*
84346098 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTTA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTTA
* * *
84346162 ATTTTTGTTTTTTAATTTTCGTTC
63 ATTTCTGTTTTTCAATTTTCGTTA
*** *
84346186 GTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATT
* *
84346251 TCTGTTCTTCAATTTAT-TTTA
66 TCTGTTTTTCAATTT-TCGTTA
* *
84346272 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTATTTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATT
84346337 TCTGTTTTTC-A---TC----
66 TCTGTTTTTCAATTTTCGTTA
* * * *
84346350 ---AAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGTTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTTAA
* * * *
84346411 ATTCTGTTTTATTAATGTCTGT-TTTT
64 TTTCTGTTTT-TCAAT-T-T-TCGTTA
* * *
84346437 CAAAAAATCAACTTATATCGCGAGAGGTGAGTTGA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
84346472 ACCCAGGGTC
Statistics
Matches: 238, Mismatches: 27, Indels: 39
0.78 0.09 0.13
Matches are distributed among these distances:
74 33 0.14
75 5 0.02
76 24 0.10
77 1 0.00
78 1 0.00
81 1 0.00
84 1 0.00
85 1 0.00
86 102 0.43
87 1 0.00
88 37 0.16
89 2 0.01
90 5 0.02
91 24 0.10
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (86 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATT
TCTGTTTTTCAATTTTCGTTA
Found at i:84347478 original size:17 final size:17
Alignment explanation
Indices: 84347445--84347479 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
84347435 TTTAAATCTG
84347445 TTCTTCTTTCTTTTTTC
1 TTCTTCTTTCTTTTTTC
84347462 TTCTT-TTTCTTTGTTTC
1 TTCTTCTTTCTTT-TTTC
84347479 T
1 T
84347480 CATATACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (17 bp):
TTCTTCTTTCTTTTTTC
Found at i:84348141 original size:3 final size:3
Alignment explanation
Indices: 84348133--84348599 Score: 126
Period size: 3 Copynumber: 152.7 Consensus size: 3
84348123 GCCTAAACAC
*
84348133 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
84348181 TAT TAGT GTA- TAT TAT TTT TAT TAT ATAT GTAT GTA- TAT GTA- TACA
1 TAT TA-T -TAT TAT TAT TAT TAT TAT -TAT -TAT -TAT TAT -TAT TA-T
* * *
84348227 TAT T-T ATAT ATAG TAT TAT T-T TAT TACCT TAT T-T TAA TAT TTT TAT
1 TAT TAT -TAT -TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT
** * *
84348273 TA- TAT TA- TAT GCT T-T T-T GTAT T-T CAA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
84348314 TAT TAT CAT ATAT TAGT GTA- TAT TTT TAT TGT ATAT GTA- TACG TAT
1 TAT TAT TAT -TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TA-T TAT
* * *
84348360 ATAT ATAT ATAT ATAG TAT TAT T-T T-T TAT TATT TAT TTT TAA TAT
1 -TAT -TAT -TAT -TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * *
84348405 TTT TAT TA- TATT TACT T-T T-T TA- TAT T-T CAA TAT TAT TAT TAT
1 TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
84348447 TAT TAT TAT TAT TAT TAT TAGT GTA- TAT TTT TAT TAT ATAT GTAT ATAT
1 TAT TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT -TAT
* * * * *
84348496 ATAT CT-T TA- TAT ATAG CAT TAT TTT TAAT TAC T-T TAT T-T TAA TAT
1 -TAT -TAT TAT TAT -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
84348541 TTT TAT TA- TAT TA- TAT TCGCT TTT TGT TAT TAA TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT TAT TAT TAT TAT TAT
84348585 TATT TAT TAT TAT TA
1 TA-T TAT TAT TAT TA
84348600 ATAATAATAG
Statistics
Matches: 351, Mismatches: 63, Indels: 100
0.68 0.12 0.19
Matches are distributed among these distances:
2 50 0.14
3 220 0.63
4 70 0.20
5 11 0.03
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:84348375 original size:136 final size:137
Alignment explanation
Indices: 84348157--84349040 Score: 936
Period size: 136 Copynumber: 6.3 Consensus size: 137
84348147 TTATTATTAT
84348157 TATTATTATTATTATTATTATTA-ATATTAGTGTATATTATTTTTATTATATATGTATGTATATG
1 TATTATTATTATTATTATTATTATATATTAGTG--TA-TATTTTTA-T-TATA--TATGTATATG
* * *
84348221 TATACATATTTATATATAGTATTA-TTTT-ATTACCTTATTTTAATATTTTTATTATATTATATG
59 TATATATATTTATACATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATG
84348284 CTTTTTGTATTTCAA
124 CTTTTTGTATTT-AA
* * *
84348299 TATTATTATTATTATTATTATCATATATTAGTGTATATTTTTATTGTATATGTATACGTATATAT
1 TATTATTATTATTATTATTATTATATATTAGTGTATATTTTTATTATATATGTATATGTATATAT
* * *
84348364 ATATATATATAGTATTATTTTTTATTA-TTTATTTTTAATATTTTTATTATATT-TA--CTTTTT
66 ATTTATACATAGTATTATTTTTAATTACTTTA-TTTTAATATTTTTATTATATTATATGC-TTTT
*
84348425 TATATTTCAA
129 TGTATTT-AA
84348435 TATTATTATTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATA--TATAT
1 TATTATTATTATTATTATTATTA-TA-TATTAGTGTATATTTTTATTATATATGTATATGTATAT
* * *
84348498 ATCTTTATATATAGCATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTCGCTT
64 ATATTTATACATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATA-T-GCTT
84348563 TTTGT-TATTAA
127 TTTGTAT-TTAA
* *
84348574 TATTATTATTATATTTATTATTATTAATAATAATAGTGTATATTTTTTATTATATGTGTATATGT
1 TATTATTA-T-TA-TTATTATTATT-AT-ATATTAGTGTATA-TTTTTATTATATATGTATATGT
* *
84348639 ATATATTTTTATACATAGTATTATTTTCTAATTACTTTATTTTAATATTTTTATTATATTATGCT
60 ATATATATTTATACATAGTATTATTTT-TAATTACTTTATTTTAATATTTTTATTATATTAT--A
*
84348704 TGCTTTTTGTTATTGATAT
122 TGCTTTTTG-TATT--TAA
*
84348723 TATTATTATATTTATTATTATTATTATTATTAATAGTGTATATTTTTATTATATATGTATATGTA
1 TATTA-T-TA-TTATTATTATTATTA-TA-TATTAGTGTATATTTTTATTATATATGTATATGTA
* *
84348788 TATATTTTTATACATAGTTTTATTTTCTAATTACTTTATTTTAATATTTTTATTATA-T-TATGC
61 TATATATTTATACATAGTATTATTTT-TAATTACTTTATTTTAATATTTTTATTATATTATATGC
** **
84348851 TTGCT-T-TTTGT
125 TTTTTGTATTTAA
* *
84348862 TGTTATTATTATTATTATTATTA-ATATTAGTGTATATTTTTATTATATATGTATATATACT-TA
1 TATTATTATTATTATTATTATTATATATTAGTGTATATTTTTATTATATATGTATATGTA-TATA
* * * *
84348925 TATTTATACATACTATTATTTTTTTTAATTACTTTATTTT--TA-TTATACTACA-T-T-TGCTT
65 TATTTATACATAGTATTA---TTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGCTT
84348984 TTTGTATTTCAA
127 TTTGTATTT-AA
* *
84348996 TATTATTACTATTATTATTATTAT-TATTA-T-TATTATTATTATTAT
1 TATTATTATTATTATTATTATTATATATTAGTGTA-TATTTTTATTAT
84349041 TATTATCACT
Statistics
Matches: 657, Mismatches: 43, Indels: 93
0.83 0.05 0.12
Matches are distributed among these distances:
131 6 0.01
132 12 0.02
133 67 0.10
134 28 0.04
135 16 0.02
136 136 0.21
137 19 0.03
138 59 0.09
139 18 0.03
140 17 0.03
141 7 0.01
142 46 0.07
143 29 0.04
144 6 0.01
145 25 0.04
146 43 0.07
147 4 0.01
148 81 0.12
149 31 0.05
150 3 0.00
151 4 0.01
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.61
Consensus pattern (137 bp):
TATTATTATTATTATTATTATTATATATTAGTGTATATTTTTATTATATATGTATATGTATATAT
ATTTATACATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTATATGCTTTTTG
TATTTAA
Found at i:84348423 original size:25 final size:24
Alignment explanation
Indices: 84348381--84348431 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
84348371 TATAGTATTA
84348381 TTTTTTATTATTTATTTTTAATAT
1 TTTTTTATTATTTATTTTTAATAT
*
84348405 TTTTATTA-TATTTACTTTTTTATAT
1 TTTT-TTATTATTTA-TTTTTAATAT
84348430 TT
1 TT
84348432 CAATATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTTATTATTTATTTTTAATAT
Found at i:84348441 original size:25 final size:24
Alignment explanation
Indices: 84348386--84348441 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
84348376 TATTATTTTT
**
84348386 TATTATTTATTTTTAATATTTTTA
1 TATTATTTATTTTTAATATTTCAA
*
84348410 T-TATATTTACTTTTTTATATTTCAA
1 TAT-TATTTA-TTTTTAATATTTCAA
84348435 TATTATT
1 TATTATT
84348442 ATTATTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 1 0.04
24 7 0.27
25 17 0.65
26 1 0.04
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.68
Consensus pattern (24 bp):
TATTATTTATTTTTAATATTTCAA
Found at i:84348728 original size:3 final size:3
Alignment explanation
Indices: 84348720--84348754 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
84348710 TTGTTATTGA
84348720 TAT TAT TAT TA- TATT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TA
84348755 ATAGTGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 26 0.87
4 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:84348766 original size:19 final size:19
Alignment explanation
Indices: 84348719--84348784 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 19
84348709 TTTGTTATTG
84348719 ATATTATTATTATATTTAT-T
1 ATATTATTATTATA--TATGT
84348739 ATTATTATTATTATTAATAGTGT
1 A-TATTATTATTA-T-ATA-TGT
*
84348762 ATATTTTTATTATATATGT
1 ATATTATTATTATATATGT
84348781 ATAT
1 ATAT
84348785 GTATATATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
19 7 0.17
20 4 0.10
21 14 0.35
22 12 0.30
23 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
ATATTATTATTATATATGT
Found at i:84348983 original size:127 final size:133
Alignment explanation
Indices: 84348734--84349034 Score: 352
Period size: 133 Copynumber: 2.3 Consensus size: 133
84348724 ATTATTATAT
* * *
84348734 TTATTATTATTATTATTATTAATAGTGTATATTTTTATTATATATGTATATGTATATATTTTTAT
1 TTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATATATATATATTTAT
* * * * * **
84348799 ACATAGTTTTATTTTCTAATTACTTTATTTTAATATTTTTATTATATTATGCTTGCTTTTTGT-T
66 ACATACTATTATTTTCTAATTACATTATCTT-ATATTTTTATTATACTACACTTGCTTTTTGTAT
84348863 GTT-A
130 -TTCA
*
84348867 TTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATACT-TATATTTA
1 TTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATATA-TATATATTTA
* *
84348931 TACATACTATTATTTT-T-TTTA-ATTA-CTT-TATTTTTATTATACTACATTTGCTTTTTGTAT
65 TACATACTATTATTTTCTAATTACATTATCTTATATTTTTATTATACTACACTTGCTTTTTGTAT
84348991 TTCA
130 TTCA
* * *
84348995 ATATTATTACTATTATTATTATTA-T-TATTATTATTATTAT
1 TTATTATTATTATTATTATTATTAGTGTA-TATTTTTATTAT
84349035 TATTATTATT
Statistics
Matches: 147, Mismatches: 17, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
126 2 0.01
127 40 0.27
128 23 0.16
129 2 0.01
130 3 0.02
131 3 0.02
132 1 0.01
133 72 0.49
134 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (133 bp):
TTATTATTATTATTATTATTATTAGTGTATATTTTTATTATATATGTATATATATATATATTTAT
ACATACTATTATTTTCTAATTACATTATCTTATATTTTTATTATACTACACTTGCTTTTTGTATT
TCA
Found at i:84349011 original size:3 final size:3
Alignment explanation
Indices: 84348996--84349046 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
84348986 TGTATTTCAA
*
84348996 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
84349044 TAT
1 TAT
84349047 CACTATTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:84349013 original size:12 final size:12
Alignment explanation
Indices: 84348996--84349122 Score: 83
Period size: 12 Copynumber: 11.2 Consensus size: 12
84348986 TGTATTTCAA
84348996 TATTATTACTAT
1 TATTATTACTAT
84349008 TATTA-T--TAT
1 TATTATTACTAT
*
84349017 TATTATTATTAT
1 TATTATTACTAT
*
84349029 TATTATTATTAT
1 TATTATTACTAT
*
84349041 TATTATCACTAT
1 TATTATTACTAT
**
84349053 TCCTATTACT-T
1 TATTATTACTAT
* *
84349064 TACTATT-GTAT
1 TATTATTACTAT
84349075 T-TTAATGTACTAT
1 TATT-AT-TACTAT
* *
84349088 TAATATTACTCT
1 TATTATTACTAT
84349100 TATT-TT-C-AT
1 TATTATTACTAT
*
84349109 TATTATTATTAT
1 TATTATTACTAT
84349121 TA
1 TA
84349123 GTACTATTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 22
0.71 0.11 0.17
Matches are distributed among these distances:
9 13 0.14
10 6 0.07
11 14 0.16
12 50 0.56
13 6 0.07
14 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTACTAT
Found at i:84349581 original size:18 final size:17
Alignment explanation
Indices: 84349541--84349587 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
84349531 CTATTTCTTT
84349541 TATTA-TTTTATTAGAA
1 TATTATTTTTATTAGAA
* *
84349557 CATTATTTTTATTGTGAA
1 TATTATTTTTATT-AGAA
*
84349575 TATTATTGTTATT
1 TATTATTTTTATT
84349588 TTTATGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 4 0.16
17 7 0.28
18 14 0.56
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.60
Consensus pattern (17 bp):
TATTATTTTTATTAGAA
Found at i:84353751 original size:18 final size:16
Alignment explanation
Indices: 84353728--84353765 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
84353718 ATTCTTATTT
84353728 AAATAAAATAAAGTAGTA
1 AAATAAAATAAA--AGTA
84353746 AAATAAAATAAAAGTA
1 AAATAAAATAAAAGTA
84353762 AAAT
1 AAAT
84353766 CTATATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
18 12 0.60
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (16 bp):
AAATAAAATAAAAGTA
Found at i:84359613 original size:27 final size:27
Alignment explanation
Indices: 84359583--84359663 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
84359573 ACATGAAATG
84359583 CTAAACTTGCTTATAAACTAGAATCGA
1 CTAAACTTGCTTATAAACTAGAATCGA
***
84359610 CTAAAC---C-TATGCTCT-GATAT-G-
1 CTAAACTTGCTTATAAACTAGA-ATCGA
84359631 CTAAACTTGCTTATAAACTAGAATCGA
1 CTAAACTTGCTTATAAACTAGAATCGA
84359658 CTAAAC
1 CTAAAC
84359664 CTATGCTCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 16
0.65 0.10 0.26
Matches are distributed among these distances:
21 6 0.15
22 3 0.08
23 7 0.17
24 2 0.05
25 7 0.17
26 3 0.08
27 12 0.30
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
CTAAACTTGCTTATAAACTAGAATCGA
Found at i:84359651 original size:48 final size:48
Alignment explanation
Indices: 84359580--84359676 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
84359570 ATAACATGAA
84359580 ATGCTAAACTTGCTTATAAACTAGAATCGACTAAACCTATGCTCTGAT
1 ATGCTAAACTTGCTTATAAACTAGAATCGACTAAACCTATGCTCTGAT
84359628 ATGCTAAACTTGCTTATAAACTAGAATCGACTAAACCTATGCTCTGAT
1 ATGCTAAACTTGCTTATAAACTAGAATCGACTAAACCTATGCTCTGAT
84359676 A
1 A
84359677 CTAAAACAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (48 bp):
ATGCTAAACTTGCTTATAAACTAGAATCGACTAAACCTATGCTCTGAT
Found at i:84365065 original size:49 final size:50
Alignment explanation
Indices: 84364993--84365209 Score: 258
Period size: 49 Copynumber: 4.4 Consensus size: 50
84364983 CTCTCCTATG
* *
84364993 ACTAAGTGCAGGCTACTACGTGTACCGGATTATT-GGTCGCATGTGTAGT
1 ACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACATGTGTAGT
* * * * * *
84365042 ACTAAGAGCAGGCTACTATGTGTACCCGATAACTTCGATCACGTGTGTAGT
1 ACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGGTCACATGTGTAGT
* * * ** * *
84365093 ACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAGGTTACGTGTGTAGT
1 ACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACATGTGTAGT
* *
84365143 ACTAAGTGCAAGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTAGT
1 ACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACATGTGTAGT
84365192 ACTAAGTGCAGGCTACTA
1 ACTAAGTGCAGGCTACTA
84365210 TGCGTACCAG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 57 0.41
50 45 0.32
51 37 0.27
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
ACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACATGTGTAGT
Found at i:84365167 original size:101 final size:98
Alignment explanation
Indices: 84364993--84365221 Score: 278
Period size: 101 Copynumber: 2.3 Consensus size: 98
84364983 CTCTCCTATG
* * * *
84364993 ACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACTAAGAGCAGGCTAC
1 ACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGAGCAAGCTAC
* *
84365058 TATGTGTACCCGATAACTTCGATCACGTGTGTAGT
66 TACGTGTACCCGATAA-TT-GATCACATGTGTAGT
* * * * * *
84365093 ACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAGGTTACGTGTGTAGTACTAAGTGCAAGCTA
1 ACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAGAGCAAGCTA
* * *
84365158 CTACGTGTACCGGATAATTGGTCGCATGTGTAGT
65 CTACGTGTACCCGATAATTGATCACATGTGTAGT
* *
84365192 ACTAAGTGCAGGCTACTATGCGTACCAGAT
1 ACTAAGTGCAGGCTACTACGTGTACCAGAT
84365222 AGCTTTGGCT
Statistics
Matches: 109, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 38 0.35
100 31 0.28
101 40 0.37
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
ACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGAGCAAGCTAC
TACGTGTACCCGATAATTGATCACATGTGTAGT
Found at i:84369417 original size:47 final size:47
Alignment explanation
Indices: 84369364--84369657 Score: 518
Period size: 47 Copynumber: 6.3 Consensus size: 47
84369354 ATAAGATATG
* * *
84369364 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84369411 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84369458 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84369505 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
*
84369552 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
* * *
84369599 TATATGTGATAAGGCC-AATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84369645 TATATGTGATAAG
1 TATATGTGATAAG
84369658 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
46 41 0.17
47 200 0.83
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
Found at i:84372143 original size:38 final size:38
Alignment explanation
Indices: 84372079--84372153 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
84372069 AATCCGAGTT
*
84372079 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
84372117 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
84372154 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:84372399 original size:40 final size:40
Alignment explanation
Indices: 84372207--84372629 Score: 660
Period size: 40 Copynumber: 10.7 Consensus size: 40
84372197 AGGTCTCGAC
*
84372207 GATG-ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
84372246 GATGTATCCGGGCTAAG-CCC-AAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
84372284 GATGTATCCGGGCTAAG-CCCCAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
84372323 GATGTATCCGGGCTAAGTTCC-AAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
84372362 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
84372402 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
84372442 GATGTATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
84372482 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
84372522 GATATATCCGGGCTAAGCCCCGAAGGGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
84372562 GATGTATCCGGGCTAAGTTCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
84372602 GATATATCCGTGCTAA-ACCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
84372630 ATCATGCTGG
Statistics
Matches: 354, Mismatches: 26, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
38 38 0.11
39 88 0.25
40 228 0.64
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:84376305 original size:47 final size:47
Alignment explanation
Indices: 84376252--84376593 Score: 594
Period size: 47 Copynumber: 7.3 Consensus size: 47
84376242 ATAAGATATG
* * *
84376252 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84376299 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84376346 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84376393 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
84376440 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
* *
84376487 TATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
* * * *
84376534 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
*
84376581 TAAATGTGATAAG
1 TATATGTGATAAG
84376594 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 285 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATGTGTA
Found at i:84378777 original size:17 final size:17
Alignment explanation
Indices: 84378755--84378801 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
84378745 GAATTTTCCA
*
84378755 TTTGGCAAACTCTAGGT
1 TTTGGCAAACTCTAGGG
84378772 TTTGGCAAACTCTAGGG
1 TTTGGCAAACTCTAGGG
* *
84378789 ATTGGCAGACTCT
1 TTTGGCAAACTCT
84378802 TCTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (17 bp):
TTTGGCAAACTCTAGGG
Found at i:84382434 original size:40 final size:40
Alignment explanation
Indices: 84382375--84382516 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
84382365 AAATTGAATG
* * *
84382375 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
84382415 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
84382455 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
84382495 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
84382517 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:84382517 original size:40 final size:39
Alignment explanation
Indices: 84382414--84382542 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
84382404 TGCTGGAAAT
* * *
84382414 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
84382454 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
84382494 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
84382534 TATATCCGG
1 TATATCCGG
84382543 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:84390443 original size:40 final size:40
Alignment explanation
Indices: 84390384--84390525 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
84390374 AAATTGAATG
* * *
84390384 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
84390424 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
84390464 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
84390504 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
84390526 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:84390526 original size:40 final size:39
Alignment explanation
Indices: 84390423--84390551 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
84390413 TGCTGGAAAT
* * *
84390423 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
84390463 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
84390503 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
84390543 TATATCCGG
1 TATATCCGG
84390552 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:84393707 original size:72 final size:72
Alignment explanation
Indices: 84393584--84393739 Score: 222
Period size: 72 Copynumber: 2.2 Consensus size: 72
84393574 ACAGCTGAGG
* * * * * * *
84393584 GTGTCACGACATACCCCTGAAGATGGCTGCAGAGGAGCATATTGGTTGCTACGTCGCGAAATAGG
1 GTGTCACGACATACCCCTGAAGATGGCTACAAAAGAGAATACTGGTAGCTACGTCGCGAAACAGG
84393649 TGTTGGT
66 TGTTGGT
* * *
84393656 GTTTCGCGACATACCCCTGAAGATGGCTACAAAAGAGAATACTGGTAGCTACGTCGCGACACAGG
1 GTGTCACGACATACCCCTGAAGATGGCTACAAAAGAGAATACTGGTAGCTACGTCGCGAAACAGG
84393721 TGTTGGT
66 TGTTGGT
84393728 GTGTCACGACAT
1 GTGTCACGACAT
84393740 TGACTTTTTG
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (72 bp):
GTGTCACGACATACCCCTGAAGATGGCTACAAAAGAGAATACTGGTAGCTACGTCGCGAAACAGG
TGTTGGT
Found at i:84395285 original size:20 final size:20
Alignment explanation
Indices: 84395260--84395297 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84395250 TAAATATAAA
* *
84395260 GAAATTTAAATTTAAATTGC
1 GAAATTAAAATTAAAATTGC
84395280 GAAATTAAAATTAAAATT
1 GAAATTAAAATTAAAATT
84395298 AAAACTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (20 bp):
GAAATTAAAATTAAAATTGC
Found at i:84400478 original size:31 final size:31
Alignment explanation
Indices: 84400435--84400498 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
84400425 CCTTTTCATA
84400435 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
84400466 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
84400497 TT
1 TT
84400499 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:84400767 original size:23 final size:24
Alignment explanation
Indices: 84400691--84400834 Score: 222
Period size: 24 Copynumber: 6.0 Consensus size: 24
84400681 GCTTTATCAT
*
84400691 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
84400716 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
84400741 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84400764 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84400788 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84400812 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
84400835 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 24 0.21
24 58 0.51
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84400908 original size:20 final size:20
Alignment explanation
Indices: 84400880--84400950 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
84400870 GCATTTATGA
*
84400880 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
84400900 ACATATCATGTGCATGTCAT
1 ACATATCATGTGCATATCAT
*
84400920 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
84400940 ACATATCATGT
1 ACATATCATGT
84400951 TTATTAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:84402181 original size:18 final size:17
Alignment explanation
Indices: 84402154--84402187 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
84402144 TAGGGAAGAA
84402154 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
84402171 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
84402188 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:84403233 original size:50 final size:51
Alignment explanation
Indices: 84403156--84403284 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
84403146 GACCATGGCA
*
84403156 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
* *
84403207 A-AAGTGATAAGTGATAGCTTAGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
*
84403257 ACAAGTGAAAAGTGGA-AGCTTCGGCTAC
1 ACAAGTGATAAGT-GATAGCTTCGGCTAC
84403285 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 47 0.66
51 22 0.31
52 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATG
Found at i:84403298 original size:31 final size:31
Alignment explanation
Indices: 84403260--84403408 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
84403250 ACAAATGACA
*
84403260 AGTGAAAAGTGGAAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
84403291 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
84403322 AGTGAAAAGTGGTAGCTCCAGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
84403353 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
84403384 AGTGCATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
84403409 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:84403572 original size:42 final size:42
Alignment explanation
Indices: 84403508--84403676 Score: 216
Period size: 42 Copynumber: 4.0 Consensus size: 42
84403498 GCATCAGTAA
* * *
84403508 GATATGTG-ATTCGTGTACGACCATAGCTAGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
*
84403549 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* *
84403591 GATATATGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* * * **
84403633 -ATTATGTGAAGATGTGTAAGACCATAGTTGAACTATGGCATC
1 GA-TATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
84403675 GA
1 GA
84403677 GAAAACGAAG
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
41 9 0.08
42 103 0.91
43 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:84416002 original size:21 final size:22
Alignment explanation
Indices: 84415967--84416007 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
84415957 TGTCACTTGA
*
84415967 AAAAGGGGCACACGCCCGTGCG
1 AAAAGGCGCACACGCCCGTGCG
84415989 AAAAGGCG-ACACGCCCGTG
1 AAAAGGCGCACACGCCCGTG
84416008 TGGCCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.29, C:0.32, G:0.34, T:0.05
Consensus pattern (22 bp):
AAAAGGCGCACACGCCCGTGCG
Found at i:84417429 original size:49 final size:49
Alignment explanation
Indices: 84417367--84417584 Score: 213
Period size: 49 Copynumber: 4.6 Consensus size: 49
84417357 ATCAAAGTCA
*
84417367 ATGCCATGTCCCAGACAGGTCTTACACTGACATTCATATATCGAAGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACATTCATATATCGAAGCTG
* * * * ** *
84417416 ATGTCGTGTCCCAGACAGGTCTTACACTGGC-TCTCATTTATCGGTGTTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACAT-TCATATATCGAAGCTG
* *
84417465 ATGCCATGTCCCAAACAGGTCTTACACT-A-ATACATA-A-C-AAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACATTCATATATCGAAGCTG
*
84417509 ATGCCATGTCCCAGACAGGTCTTACACT-AGC-TT-GTATATCTAGAAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CATTCATATATC--GAAGCTG
* *
84417558 ATG-CACGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
84417585 AGCTCTCCTC
Statistics
Matches: 138, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
44 33 0.24
45 3 0.02
46 2 0.01
47 3 0.02
48 24 0.17
49 73 0.53
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACATTCATATATCGAAGCTG
Found at i:84417579 original size:48 final size:48
Alignment explanation
Indices: 84417503--84417681 Score: 170
Period size: 48 Copynumber: 3.8 Consensus size: 48
84417493 AATACATAAC
* *
84417503 AAGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTAG
1 AAGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTAG
* * * **
84417552 AAGCTGATGCACGTCCCAGACATGTCTTACACTAGC-TCT-CCTCTCA-
1 AAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCT-AG
* ** * *
84417598 ATA-CCGATACATGTTACAGACATATCTTACACT-GTCTTGTATATCTCG
1 A-AGCCGATGCATGTCCCAGACATGTCTTACACTAG-CTTGTATATCTAG
*
84417646 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AAGCCGATGCATGTCCCAGACATGTCTTACACTAGC
84417682 ACACATATCA
Statistics
Matches: 102, Mismatches: 20, Indels: 17
0.73 0.14 0.12
Matches are distributed among these distances:
45 1 0.01
46 29 0.28
47 6 0.06
48 56 0.55
49 10 0.10
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
AAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTAG
Found at i:84427203 original size:20 final size:20
Alignment explanation
Indices: 84427154--84427192 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
84427144 AGAGCCACAC
84427154 GCCCATGTGGCTTGGGACAA
1 GCCCATGTGGCTTGGGACAA
84427174 GCCCATGTGGCTTGGGACA
1 GCCCATGTGGCTTGGGACA
84427193 CACCCGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.18, C:0.26, G:0.36, T:0.21
Consensus pattern (20 bp):
GCCCATGTGGCTTGGGACAA
Found at i:84428002 original size:43 final size:42
Alignment explanation
Indices: 84427954--84428090 Score: 126
Period size: 38 Copynumber: 3.3 Consensus size: 42
84427944 ACCAATGCCA
84427954 ATCCCAGA-TATGGTATTACATAGAATCTCATATCGGTGGCAAT
1 ATCCCA-ACTATGGT-TTACATAGAATCTCATATCGGTGGCAAT
* *
84427997 ATCCCAACAATGG--T--ATGGAATCTCATATCGGTGGCAAT
1 ATCCCAACTATGGTTTACATAGAATCTCATATCGGTGGCAAT
* * * *
84428035 ATCCCAACTATGGTCTTACA-CGAATCCTCATATTGAT-GCCAT
1 ATCCCAACTATGGT-TTACATAGAAT-CTCATATCGGTGGCAAT
*
84428077 ATCCCAAATATGGT
1 ATCCCAACTATGGT
84428091 CTTATACGTA
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
38 35 0.44
40 1 0.01
41 1 0.01
42 22 0.28
43 20 0.25
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (42 bp):
ATCCCAACTATGGTTTACATAGAATCTCATATCGGTGGCAAT
Found at i:84428027 original size:38 final size:38
Alignment explanation
Indices: 84427976--84428048 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
84427966 GTATTACATA
84427976 GAATCTCATATCGGTGGCAATATCCCAACAATGGTATG
1 GAATCTCATATCGGTGGCAATATCCCAACAATGGTATG
*
84428014 GAATCTCATATCGGTGGCAATATCCCAACTATGGT
1 GAATCTCATATCGGTGGCAATATCCCAACAATGGT
84428049 CTTACACGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (38 bp):
GAATCTCATATCGGTGGCAATATCCCAACAATGGTATG
Found at i:84432173 original size:2 final size:2
Alignment explanation
Indices: 84432166--84432192 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
84432156 TTTATGCAAG
84432166 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
84432193 GTTCGAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84434511 original size:15 final size:14
Alignment explanation
Indices: 84434491--84434521 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
84434481 GCTGAAATTT
84434491 CTAGGGTTTCCATAG
1 CTAGGGTTTCCA-AG
84434506 CTAGGGTTTCCAAG
1 CTAGGGTTTCCAAG
84434520 CT
1 CT
84434522 TTCCGAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (14 bp):
CTAGGGTTTCCAAG
Found at i:84439421 original size:29 final size:27
Alignment explanation
Indices: 84439387--84439489 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
84439377 TACTCAATCA
*
84439387 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
84439416 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
* *
84439445 CACACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
84439474 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84439490 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:84456030 original size:44 final size:44
Alignment explanation
Indices: 84455960--84456082 Score: 169
Period size: 44 Copynumber: 2.8 Consensus size: 44
84455950 TACGGTACTA
* * *
84455960 ATCGGGCCTTTGAGCCTAGCATGCTATAATGCTAGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGAT
* * *
84456004 ATCGGGCCTTCAAGCCTAGTAGGCTATTATGCCAGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGAT
*
84456048 ATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTG
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTG
84456083 GATGAATTTG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 9 0.13
43 16 0.23
44 44 0.64
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGAT
Found at i:84465168 original size:40 final size:39
Alignment explanation
Indices: 84465124--84465316 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
84465114 GTTCAAAACA
* * ** * *
84465124 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
84465164 CCTTCGGAACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCATAACTCGCACAATTG
*
84465204 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84465243 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84465282 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
84465317 TTCATTCACA
Statistics
Matches: 136, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 99 0.73
40 37 0.27
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:84465235 original size:39 final size:39
Alignment explanation
Indices: 84465154--84465316 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
84465144 TATGGTAACC
* * *
84465154 CGCACAAATGCCTTCGGAACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGG-GCTTAGCCCGGATATCACAACT
* *
84465194 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84465233 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84465272 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
84465311 CGCACA
1 CGCACA
84465317 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:84476642 original size:103 final size:103
Alignment explanation
Indices: 84476454--84476656 Score: 343
Period size: 103 Copynumber: 2.0 Consensus size: 103
84476444 AGTCTTATCT
*
84476454 CCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTCCCTGAAGTTGCAGTGAAGC
1 CCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTCCCTGAAGTTGCAGTGAAGC
*
84476519 AGATCGAAGCCACAAACCTTATCTCTCTGAAGTTGTAG
66 AGATCAAAGCCACAAACCTTATCTCTCTGAAGTTGTAG
* * * *
84476557 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGC
1 CCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTCCCTGAAGTTGCAGTGAAGC
*
84476622 AGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
66 AGATCAAAGCCACAAACCTTATCTCTCTGAAGTTG
84476657 CAGTTGAGCA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 93 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (103 bp):
CCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTGCCTCCCTGAAGTTGCAGTGAAGC
AGATCAAAGCCACAAACCTTATCTCTCTGAAGTTGTAG
Found at i:84476703 original size:46 final size:45
Alignment explanation
Indices: 84476557--84476710 Score: 170
Period size: 44 Copynumber: 3.4 Consensus size: 45
84476547 GAAGTTGTAG
* * * *
84476557 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-GTAGATCTTGTCT
1 CCCTGAAGTTGCAGTGGAGCAGA-TAAAGATACGTAAACCTTATCT
** *
84476602 CCCTGAAGTTGCAGTGGAGCAGATCAAAGCCAC--AATCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGAT-AAAGATACGTAAACCTTATCT
* * *
84476646 CTCTGAAGTTGCAGTTGAGCAGGATAAAAATACGTAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GATAAAGATACGTAAACCTTATCT
84476692 CCCTGAAGTTGCAGTGGAG
1 CCCTGAAGTTGCAGTGGAG
84476711 TAGTTGCAGT
Statistics
Matches: 89, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
44 32 0.36
45 30 0.34
46 27 0.30
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
CCCTGAAGTTGCAGTGGAGCAGATAAAGATACGTAAACCTTATCT
Found at i:84478549 original size:2 final size:2
Alignment explanation
Indices: 84478537--84478571 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
84478527 AAATTATTCT
*
84478537 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84478572 TCGATCTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:84484539 original size:13 final size:13
Alignment explanation
Indices: 84484505--84484545 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
84484495 CTGGACTTCC
*
84484505 TCACACGGGCATG
1 TCACACGGTCATG
84484518 TCACACGGTCATG
1 TCACACGGTCATG
*
84484531 TCACACGGTCGTG
1 TCACACGGTCATG
84484544 TC
1 TC
84484546 CCTTTGGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.22
Consensus pattern (13 bp):
TCACACGGTCATG
Done.