Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 283 of 345
Found at i:84488556 original size:40 final size:40
Alignment explanation
Indices: 84488478--84488696 Score: 230
Period size: 40 Copynumber: 5.5 Consensus size: 40
84488468 GATGTCCGTG
* * *
84488478 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGA
1 CTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGA
*
84488518 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGA
* * *
84488558 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTTCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGA
* * *
84488598 CTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGA
* * * * *
84488637 TTAAGCCCCGAAGGCATTTGTGCGAGCTACT-ATAACCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGA
* *
84488677 CTATGTCCCGAAGGCATTTG
1 CTAAGACCCGAAGGCATTTG
84488697 AATGAGTAGC
Statistics
Matches: 157, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 113 0.72
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGA
Found at i:84488622 original size:79 final size:80
Alignment explanation
Indices: 84488478--84488694 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 80
84488468 GATGTCCGTG
* * * * *
84488478 CTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTG
1 CTAAGACCCGAAGGCATTTGTGC-GAGCT-ACTATAACCGGGCTAAG-TCCCGAAGGCATTGGTG
*
84488540 CGAGTTACTAATTCCGGA
63 CGAGTTACTAAATCCGGA
* * **
84488558 CTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATTTCGGGCTAAG-CCCGAAGGCATTGGTGCG
1 CTAAGACCCGAAGGCATTTGTGCGAGCTACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGTGCG
*
84488621 AGTTACTAAATCCGGG
65 AGTTACTAAATCCGGA
* * *
84488637 TTAAGCCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CTAAGACCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGCATT
84488695 TGAATGAGTA
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
79 67 0.58
80 41 0.35
81 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAGACCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGA
GTTACTAAATCCGGA
Found at i:84488718 original size:79 final size:79
Alignment explanation
Indices: 84488525--84488719 Score: 189
Period size: 79 Copynumber: 2.5 Consensus size: 79
84488515 GGACTAAGAT
* ** * ** ** *
84488525 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGCTACTA
**
84488590 ATTTCGGGCTAAGC
66 ATACCGGGCTAAGC
**
84488604 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGCTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGCTACTA
*
84488668 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
84488684 CCGAAGGCATTTGAATGAG-TAGCTATATCC-GGTTAA
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTTAA
84488720 ATTCCGAAGG
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 2 0.02
79 73 0.74
80 23 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGCTACTA
ATACCGGGCTAAGC
Found at i:84492322 original size:55 final size:55
Alignment explanation
Indices: 84492262--84492389 Score: 134
Period size: 55 Copynumber: 2.3 Consensus size: 55
84492252 CGTGTCAATC
* * *
84492262 TAACAGGTTTGACCACGGGTGC-TAGACACGGGCGTGTCGCACGCCTGTGCTGTTT
1 TAACAGGTTTGACCACGGAT-CTTAGACACGGGCGTGTCGCACGCCCGTGCTATTT
* ** *
84492317 TAACAGG-TTCACTCACGGATCTTCTACACGGGCGTGTCGCACGCCCGTGTTATTT
1 TAACAGGTTTGAC-CACGGATCTTAGACACGGGCGTGTCGCACGCCCGTGCTATTT
** *
84492372 TGGCAAGTTTGACCACGG
1 TAACAGGTTTGACCACGG
84492390 CCATGTCGCA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
54 5 0.08
55 50 0.85
56 4 0.07
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.27
Consensus pattern (55 bp):
TAACAGGTTTGACCACGGATCTTAGACACGGGCGTGTCGCACGCCCGTGCTATTT
Found at i:84508339 original size:22 final size:22
Alignment explanation
Indices: 84508314--84508356 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
84508304 ACACTGAGTT
*
84508314 TCTTCTCCTAGTTAAACTCTAC
1 TCTTCTCCTAGTCAAACTCTAC
* *
84508336 TCTTTTCCTAGTCGAACTCTA
1 TCTTCTCCTAGTCAAACTCTA
84508357 ATTAGTCTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.30, G:0.07, T:0.42
Consensus pattern (22 bp):
TCTTCTCCTAGTCAAACTCTAC
Found at i:84510358 original size:64 final size:64
Alignment explanation
Indices: 84510253--84510458 Score: 184
Period size: 67 Copynumber: 3.1 Consensus size: 64
84510243 CATCATGTGT
*
84510253 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA-AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
84510318 TAG
62 TAG
** * * * * * * *
84510321 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGT
84510386 AG
63 AG
* * * *
84510388 ACAAGAGAGCTACAAGATAAAT-TGGCTAGGTCACATGGGTGCTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG
84510450 TACAAGAGA
1 -ACAAGAGA
84510459 CCCGAACTAT
Statistics
Matches: 112, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.15
64 25 0.22
65 2 0.02
66 21 0.19
67 32 0.29
68 14 0.12
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACAAGATAAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:84512746 original size:9 final size:9
Alignment explanation
Indices: 84512687--84513017 Score: 74
Period size: 9 Copynumber: 35.1 Consensus size: 9
84512677 ACAAAAAATA
84512687 AAAACATTAT
1 AAAA-ATTAT
*
84512697 TAAAATTATT
1 AAAAATTA-T
84512707 AAAATATTA-
1 AAAA-ATTAT
**
84512716 AAATTTTAT
1 AAAAATTAT
* *
84512725 ATAAACT-T
1 AAAAATTAT
84512733 AAAAATTAT
1 AAAAATTAT
84512742 AAAAAAATTGA-
1 --AAAAATT-AT
84512753 AAAAA--AT
1 AAAAATTAT
*
84512760 AATAACTTAT
1 AA-AAATTAT
*
84512770 AAATATTAT
1 AAAAATTAT
*
84512779 AAATACTTAT
1 AAA-AATTAT
84512789 -AAAATTAT
1 AAAAATTAT
*
84512797 AACAAACTAT
1 AA-AAATTAT
84512807 AAAATAATTAT
1 -AAA-AATTAT
*
84512818 -AAAA-GAT
1 AAAAATTAT
* *
84512825 AAAGATAAT
1 AAAAATTAT
*
84512834 AAAAATAATT
1 AAAAATTA-T
*
84512844 AAAAATTTCTT
1 AAAAA-TT-AT
* **
84512855 TAATTTTAT
1 AAAAATTAT
*
84512864 AAATATTAT
1 AAAAATTAT
*
84512873 AAAAAAATGGAT
1 --AAAAAT-TAT
*
84512885 AAATATTAT
1 AAAAATTAT
*
84512894 AAAAATTCT
1 AAAAATTAT
84512903 AAAAAATTATT
1 -AAAAATTA-T
*
84512914 AATAATTAT
1 AAAAATTAT
*
84512923 AAAACTTAT
1 AAAAATTAT
**
84512932 AAAAACAGCAT
1 -AAAA-ATTAT
84512943 AAAAACTTATT
1 AAAAA-TTA-T
84512954 AAAAA--AT
1 AAAAATTAT
*
84512961 AAAAATTTCT
1 AAAAA-TTAT
*
84512971 AATAATTAT
1 AAAAATTAT
*
84512980 AAAAA-AAT
1 AAAAATTAT
*
84512988 ATAAAATCAT
1 A-AAAATTAT
84512998 AAAATATTA-
1 AAAA-ATTAT
84513007 AAAAATATAT
1 AAAAAT-TAT
84513017 A
1 A
84513018 TATAAATCCA
Statistics
Matches: 231, Mismatches: 52, Indels: 76
0.64 0.14 0.21
Matches are distributed among these distances:
6 1 0.00
7 10 0.04
8 27 0.12
9 84 0.36
10 70 0.30
11 36 0.16
12 3 0.01
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:84513500 original size:20 final size:21
Alignment explanation
Indices: 84513475--84513513 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
84513465 GTTTAAATAC
84513475 TTTATT-TTC-ATAATATTTAG
1 TTTATTATTCTATAA-ATTTAG
84513495 TTTATTATTCTATAAATTT
1 TTTATTATTCTATAAATTT
84513514 TTATAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTATTATTCTATAAATTTAG
Found at i:84513542 original size:30 final size:31
Alignment explanation
Indices: 84513508--84513576 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
84513498 ATTATTCTAT
*
84513508 AAATTTT-TATAATTTATTAGATTTTTATGA
1 AAATTTTATATAATTTATAAGATTTTTATGA
* *
84513538 AAATTTTATATTATTTATAAGTTTTTTATG-
1 AAATTTTATATAATTTATAAGATTTTTATGA
84513568 -AATTTTATA
1 AAATTTTATA
84513577 AGTTTTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 9 0.26
30 7 0.20
31 19 0.54
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (31 bp):
AAATTTTATATAATTTATAAGATTTTTATGA
Found at i:84513595 original size:50 final size:49
Alignment explanation
Indices: 84513497--84513617 Score: 126
Period size: 49 Copynumber: 2.4 Consensus size: 49
84513487 ATATTTAGTT
* *
84513497 TATTATTCTATAA-ATTTTTATAATTTATTAGATTTTTATGAAAATTTTA
1 TATTATT-TATAAGTTTTTTATAATTTATAAGATTTTTATGAAAATTTTA
84513546 TATTATTTATAAGTTTTTTATGAATTTTATAAG-TTTTTAT-AAAAGTTTTA
1 TATTATTTATAAGTTTTTTAT-AA-TTTATAAGATTTTTATGAAAA-TTTTA
*
84513596 -AATATTT-TAAGTATGTTTTATA
1 TATTATTTATAAGT-T-TTTTATA
84513618 TGTTTTATTA
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
48 10 0.16
49 26 0.41
50 20 0.32
51 7 0.11
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.57
Consensus pattern (49 bp):
TATTATTTATAAGTTTTTTATAATTTATAAGATTTTTATGAAAATTTTA
Found at i:84513625 original size:50 final size:51
Alignment explanation
Indices: 84513511--84513616 Score: 125
Period size: 50 Copynumber: 2.1 Consensus size: 51
84513501 ATTCTATAAA
* *
84513511 TTTTTAT-AA-TTTATTAGATTTTTATGAAAATTTTATATTATTTATAAGT
1 TTTTTATGAATTTTATAAGATTTTTATGAAAATTTTATAATATTTATAAGT
84513560 TTTTTATGAATTTTATAAG-TTTTTAT-AAAAGTTTTA-AATATTT-TAAGT
1 TTTTTATGAATTTTATAAGATTTTTATGAAAA-TTTTATAATATTTATAAGT
84513608 ATGTTTTAT
1 -T-TTTTAT
84513617 ATGTTTTATT
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
48 5 0.10
49 18 0.36
50 20 0.40
51 7 0.14
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (51 bp):
TTTTTATGAATTTTATAAGATTTTTATGAAAATTTTATAATATTTATAAGT
Found at i:84517519 original size:2 final size:2
Alignment explanation
Indices: 84517514--84517543 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
84517504 CCCTTTCTTT
84517514 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
84517544 ATTTGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:84521039 original size:46 final size:46
Alignment explanation
Indices: 84520984--84521164 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
84520974 TAGGATGGTT
84520984 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
84521030 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
84521076 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
84521123 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84521165 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:84521145 original size:93 final size:93
Alignment explanation
Indices: 84520986--84521156 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
84520976 GGATGGTTGA
* *
84520986 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84521051 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84521079 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84521144 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84521157 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84524129 original size:15 final size:15
Alignment explanation
Indices: 84524109--84524177 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
84524099 GTATCTTGGG
84524109 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
84524124 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
84524139 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
84524154 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
84524169 TTTCTTTAT
1 TTTCTTTAT
84524178 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:84524178 original size:30 final size:30
Alignment explanation
Indices: 84524100--84524187 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
84524090 CATAGTATCG
* * * *
84524100 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
84524130 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
84524160 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
84524188 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:84526620 original size:46 final size:46
Alignment explanation
Indices: 84526565--84526745 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
84526555 TAGGATGGTT
84526565 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
84526611 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
84526657 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
84526704 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84526746 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:84526726 original size:93 final size:93
Alignment explanation
Indices: 84526567--84526737 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
84526557 GGATGGTTGA
* *
84526567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84526632 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84526660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84526725 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84526738 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84529531 original size:23 final size:23
Alignment explanation
Indices: 84529503--84529566 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
84529493 GAGCTAAAAG
*
84529503 GTAAGCTCCAATGAGCTGAAACA
1 GTAAGCTCCAACGAGCTGAAACA
** *
84529526 GTAAGCTCTTACGAGCTGAATCA
1 GTAAGCTCCAACGAGCTGAAACA
84529549 GTAAGCT-CATACGAGCTG
1 GTAAGCTCCA-ACGAGCTG
84529567 TGGTGAGTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (23 bp):
GTAAGCTCCAACGAGCTGAAACA
Found at i:84534061 original size:2 final size:2
Alignment explanation
Indices: 84534054--84534078 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84534044 TATTATAATT
84534054 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
84534079 GAAACTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84534715 original size:24 final size:26
Alignment explanation
Indices: 84534682--84534736 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
84534672 TGTATATATA
* *
84534682 TTTTTGGTT-AATTTGATTCTT-ATT
1 TTTTTAGTTAAATTTAATTCTTAATT
*
84534706 TTTTTAGTTAAATTTAATTTTTAATT
1 TTTTTAGTTAAATTTAATTCTTAATT
84534732 TTTTT
1 TTTTT
84534737 TAAAAAGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 8 0.31
25 10 0.38
26 8 0.31
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.69
Consensus pattern (26 bp):
TTTTTAGTTAAATTTAATTCTTAATT
Found at i:84536404 original size:19 final size:18
Alignment explanation
Indices: 84536364--84536404 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
84536354 TGTCTACCAC
*
84536364 TTGTAAAAAGAAAAAATA
1 TTGTAAAAAAAAAAAATA
84536382 --GTAAATAAAAAAAAATA
1 TTGTAAA-AAAAAAAAATA
84536399 TTGTAA
1 TTGTAA
84536405 CAAGGCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 5
0.76 0.04 0.20
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
19 4 0.21
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (18 bp):
TTGTAAAAAAAAAAAATA
Found at i:84536562 original size:14 final size:15
Alignment explanation
Indices: 84536538--84536567 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
84536528 CTTTGTTCAT
84536538 TTTTCATTTATTTTA
1 TTTTCATTTATTTTA
84536553 TTTT-ATTTATTTTA
1 TTTTCATTTATTTTA
84536567 T
1 T
84536568 ATATATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCATTTATTTTA
Found at i:84537164 original size:2 final size:2
Alignment explanation
Indices: 84537157--84537186 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
84537147 ATTATCTGTT
84537157 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84537187 ATTTAGCTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84549514 original size:44 final size:44
Alignment explanation
Indices: 84549460--84551504 Score: 2147
Period size: 44 Copynumber: 46.4 Consensus size: 44
84549450 AATCCAAGAT
* *
84549460 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84549504 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84549548 AATTTGACGTCTCTGTAGCGGCGGAGAGCAGATTGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84549592 AATTTGGCATCTCTGTAGTGGCGGAGAGTAGGTCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
84549636 GATTTGGCATCTCTGTAGCGGCATAGAGGAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84549680 GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCAAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
84549720 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84549764 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** * * ** * * *
84549808 GATTTGGTGTTTC-GATAACAGATTTGGCATCTCTGTAGC-G-GCGGAGAGCAGATCGAA
1 GATTTGGCATCTCTG-TAGC-G--GCGG-A-----G-AGCAGATC-GA-AG-ATAAC--A
** * ** * * * * * * *
84549865 GATAACGG-ATTTGGCGTCTCT-GTAGCGGCG-G-AGAGTAGGTCAAAGATAATA
1 GAT-TTGGCA--T--C-TCTGTAGCGGCGGAGAGCAGA-T-CG-AAGATAA--CA
* * *
84549916 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * *
84549960 GATTTAGCATATCTGTAGCGGCAGAAATCAGATTGAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84550000 GATTTGGCATCTCTGTAGCGGCGGAGAGTAAATCAAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84550044 GATTTGGCATCTCTGTAGCGGCGGAGAGCATATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84550088 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGGTCGAAGATAACACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-A-ACA
* * * * * * * ** * *
84550134 GA-TCGAAG-ATAACAGATTTGGCATC-TCTGTAGCGGTGA-AGAGCAGATCGAAGA
1 GATTTG--GCAT--C---TCT-GTAGCGGC-GGAGAGCAGATCGA--AGAT--AACA
* * *
84550187 TAATTTGGCATTTCTATAGCGGCGGAGAGCAGATCGAAGAT----
1 -GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84550228 GATTTTGGCATCTCTGTAGCGGCGGAGAACAGATCGAAGATAACA
1 GA-TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
84550273 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAA-ATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84550316 GATATGG-AGTCTCTATAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCA-TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
84550360 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
84550404 GATTTAGTGTCTCTGTAGCGGCGGAAAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84550448 GATTTGGCGTCTCGGTAGCGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550492 AATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
84550536 GATTTGGTGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550580 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550624 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550664 GATTTGGCATTTCTGTAGCGGCAGAGAGCAGATCGAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84550704 GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84550748 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATTGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
84550792 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84550836 GATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550880 AATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550924 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84550968 GATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84551012 GATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATTGAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
84551052 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84551096 GATTTGGCGTCTCTGAAGTGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84551140 GATTTGGCGTCTCTGTGGCGACGGAGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84551184 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
84551224 GATTTGGCATCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84551268 GATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAGGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84551312 AATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84551356 GATTTGGCGTTTTTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84551400 GATTTGGCATCTCTGTAGCGACGGAGAGCAGATCAAAGATAAAA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
84551444 GATTTGGCGTCTCTATAGCGGCGGAGAGTAGATCGAAGATAACG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84551488 GATTTGGCGTCTCTGTA
1 GATTTGGCATCTCTGTA
84551505 TTAAACGGTG
Statistics
Matches: 1690, Mismatches: 230, Indels: 162
0.81 0.11 0.08
Matches are distributed among these distances:
40 216 0.13
41 35 0.02
42 1 0.00
43 38 0.02
44 1282 0.76
45 7 0.00
46 13 0.01
47 12 0.01
48 12 0.01
49 9 0.01
50 4 0.00
51 13 0.01
52 11 0.01
53 11 0.01
54 9 0.01
55 5 0.00
57 4 0.00
58 4 0.00
59 1 0.00
62 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:84549609 original size:132 final size:132
Alignment explanation
Indices: 84549460--84551504 Score: 2493
Period size: 132 Copynumber: 15.5 Consensus size: 132
84549450 AATCCAAGAT
* * *
84549460 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
84549525 CGGAGAGCAGATCGAAGATAACAAATTTGACGTCTCTGTAGCGGCGGAGAGCAGATTGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84549590 CA
131 CA
* * * * *
84549592 AATTTGGCATCTCTGTAGTGGCGGAGAGTAGGTCGAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
** * * * *
84549657 CATAGAGGAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCAAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84549720 --
131 CA
*
84549720 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * * * *
84549785 CAGAGAGCAGATCGAAGATAACAGATTTGGTGTTTC-GATAACAGATTTGGCATCTCTGTAGCGG
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTG-T---AG---CGG-----C-GGAG-AG
* *
84549849 CGGAGAGCAGATCGAAGATAACG
117 C--AGATC-GA----AGATAACA
* * * * *
84549872 GATTTGGCGTCTCTGTAGCGGCGGAGAGTAGGTCAAAGATAATAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * * * * * * *
84549937 CAGAGAGCAGATCAAAGATAACAGATTTAGCATATCTGTAGCGGCAGAAATCAGATTGAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550000 --
131 CA
* * * *
84550000 GATTTGGCATCTCTGTAGCGGCGGAGAGTAAATCAAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
84550065 CGGAGAGCATATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGGTCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC---G-G-A----G-AG----
84550130 CACAGATCGAAGATAACA
117 --CAGATCGAAGATAACA
* * * * *
84550148 GATTTGGCATCTCTGTAGCGGTGAAGAGCAGATCGAAGAT---A-ATTTGGCATTTCTATAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
84550209 CGGAGAGCAGATCGAAGAT----GATTTTGGCATCTCTGTAGCGGCGGAGAACAGATCGAAGATA
66 CGGAGAGCAGATCGAAGATAACAGA-TTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATA
84550270 ACA
130 ACA
* * *
84550273 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAA-ATAACAGATATGGAGTCTCTATAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
84550337 CAGAGAGTAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550402 CA
131 CA
* ** * *
84550404 GATTTAGTGTCTCTGTAGCGGCGGAAAGCAGATCGAAGATAACAGATTTGGCGTCTCGGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
84550469 CAGAGAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550534 CA
131 CA
** *
84550536 GATTTGGTGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
84550601 CAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550664 --
131 CA
* * *
84550664 GATTTGGCATTTCTGTAGCGGCAGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
84550725 TGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAGCAGATTGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550790 CA
131 CA
*
84550792 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
84550857 CGGAGAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84550922 CA
131 CA
* * *
84550924 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
84550989 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATTGAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84551052 --
131 CA
* *
84551052 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGAAGTGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
84551117 CGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTGGCGACGGAGAGTAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84551182 CA
131 CA
* * *
84551184 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
84551245 CAGAGAGTAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAGGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
84551310 CA
131 CA
* * * * *
84551312 AATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTTTTTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
84551377 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAGCAGATCAAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
*
84551442 AA
131 CA
* * * *
84551444 GATTTGGCGTCTCTATAGCGGCGGAGAGTAGATCGAAGATAACGGATTTGGCGTCTCTGTA
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
84551505 TTAAACGGTG
Statistics
Matches: 1662, Mismatches: 179, Indels: 144
0.84 0.09 0.07
Matches are distributed among these distances:
124 79 0.05
125 51 0.03
127 2 0.00
128 528 0.32
131 77 0.05
132 695 0.42
133 1 0.00
134 3 0.00
136 3 0.00
137 4 0.00
138 2 0.00
139 2 0.00
140 6 0.00
141 21 0.01
143 4 0.00
144 48 0.03
145 1 0.00
146 2 0.00
148 39 0.02
149 2 0.00
152 91 0.05
153 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (132 bp):
GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
CA
Found at i:84549855 original size:108 final size:108
Alignment explanation
Indices: 84549720--84549922 Score: 343
Period size: 108 Copynumber: 1.9 Consensus size: 108
84549710 GATCAAAGAT
84549720 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
*
84549785 CAGAGAGCAGATCGAAGATAACAGATTTGGTGTTTCGATAACA
66 CAGAGAGCAGATCAAAGATAACAGATTTGGTGTTTCGATAACA
* *
84549828 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* * * *
84549893 CGGAGAGTAGGTCAAAGATAATAGATTTGG
66 CAGAGAGCAGATCAAAGATAACAGATTTGG
84549923 CGTCTCTGTA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 88 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (108 bp):
GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
CAGAGAGCAGATCAAAGATAACAGATTTGGTGTTTCGATAACA
Found at i:84549858 original size:64 final size:64
Alignment explanation
Indices: 84549757--84549878 Score: 226
Period size: 64 Copynumber: 1.9 Consensus size: 64
84549747 GCAGATCGAA
84549757 GATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGTGTTTC
1 GATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGTGTTTC
* *
84549821 GATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGG
1 GATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGG
84549879 CGTCTCTGTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
GATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGTGTTTC
Found at i:84550168 original size:60 final size:60
Alignment explanation
Indices: 84550075--84550189 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 60
84550065 CGGAGAGCAT
* * *
84550075 ATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGGTCGAAGATAACACAG
1 ATCGAAGATAACAGATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGATAACACAG
* *
84550135 ATCGAAGATAACAGATTTGGCATCTCTGTAGCGGTGAAGAGCAGATCGAAGATAA
1 ATCGAAGATAACAGATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGATAA
84550190 TTTGGCATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (60 bp):
ATCGAAGATAACAGATTTGGCATCTCTATAGCGGCGAAGAGCAGATCGAAGATAACACAG
Found at i:84550775 original size:432 final size:430
Alignment explanation
Indices: 84549460--84551504 Score: 2529
Period size: 432 Copynumber: 4.7 Consensus size: 430
84549450 AATCCAAGAT
* * *
84549460 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGG
1 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* * *
84549525 CGGAGAGCAGATCGAAGATAACAAATTTGACGTCTCTGTAGCGGCGGAGAGCAGATTGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * * *
84549590 CAAATTTGGCATCTCTGTAGTGGCGGAGAGTAGGTCGAAGATAACAGATTTGGCATCTCTGTAGC
131 CAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
** * * * * *
84549655 GGCATAGAGGAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCAAAGAT
196 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGAT
*
84549720 ----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTA
261 AACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCATCTCTGTA
* * ** * *** *
84549781 GCGGCAGAGAGCAGATCGAAGAT-A----ACAGAT-T-T---GG-TG-TTTC-GAT---A-ACAG
323 GCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAG
*
84549829 ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
388 ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * * *
84549872 GATTTGGCGTCTCTGTAGCGGCGGAGAGTAGGTCAAAGATAATAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* * * * * * * * *
84549937 CAGAGAGCAGATCAAAGATAACAGATTTAGCATATCTGTAGCGGCAGAAATCAGATTGAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * * * *
84550000 --GATTTGGCATCTCTGTAGCGGCGGAGAGTAAATCAAAGATAACAGATTTGGCATCTCTGTAGC
131 CAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* *
84550063 GGCGGAGAGCATATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGGTCGAAGAT
196 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA---GC---GA-C--G--G-AG--
* * * *
84550128 AACACAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGTGAAGAGCAGATCGAAGATA-ATT
247 -A-GCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATT
* * *
84550192 TGGCATTTCTATAGCGGCGGAGAGCAGATCGAAGATGATTTTGGCATCTCTGTAGCGGCGGAGAA
310 TGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGA-TTTGGCATCTCTGTAGCGGCGGAGAG
84550257 CAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAA-ATAACA
374 CAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
84550316 GATATGGAGTCTCTATAGCGGCAGAGAGTAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* * *
84550381 CGGAGAGCAGATCGAAGATAACAGATTTAGTGTCTCTGTAGCGGCGGAAAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
* * * * *
84550446 CAGATTTGGCGTCTCGGTAGCGGCAGAGAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTAGC
131 CAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
84550511 GGCGGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGGCGGAGAGTAGATCGAAGAT
196 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGAT
* *
84550576 AACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
261 AACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT---AGATTTGGCATCTCTGTA
* * *
84550641 GCGGCGGAGAGCAGATCAAAGATGATTTGGCATTTCTGTAGCGGCAGAGAGCAGATCGAAGAT-G
323 GCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAG
*
84550705 ATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACA
388 ATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84550748 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATTGAAGATAACAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
* *
84550813 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATAG
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
*
84550878 CAAATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
131 CAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
84550943 GGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGAT
196 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGAT
* *
84551008 AACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATTGAAGAT-GATTTGGCATCTCTGTAGCG
261 AACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCATCTCTGTAGCG
* * * *
84551072 GCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGAAGTGGCGGAGAGCAGATCAAAGATA
326 GCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-
* * * *
84551137 ACAGATTTGGCGTCTCTGTGGCGACGGAGAGTAGATCGAAGATAACA
386 --AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
84551184 GATTTGGCGTCTCTGTAGCGGC-GAAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCG
1 GATTTGGCGTCTCTATAGCGGCAG-AGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCG
* * * *
84551244 GCAGAGAGTAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCGGCGGAGAGCAGATCGAGGATA
65 GCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATA
* *
84551309 ACAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTTTTTGTAG
130 ACAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAG
* *
84551374 CGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGACGGAGAGCAGATCAAAGA
195 CGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGA
* * * *
84551439 TAAAAGATTTGGCGTCTCTATAGCGGCGGAGAGTAGATCGAAGATAACGGATTTGGCGTCTCTGT
260 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-A--GATTTGGCATCTCTGT
84551504 A
322 A
84551505 TTAAACGGTG
Statistics
Matches: 1428, Mismatches: 142, Indels: 102
0.85 0.08 0.06
Matches are distributed among these distances:
408 94 0.07
411 1 0.00
412 112 0.08
414 1 0.00
415 1 0.00
417 1 0.00
419 1 0.00
420 2 0.00
423 1 0.00
424 47 0.03
425 2 0.00
428 76 0.05
430 3 0.00
431 37 0.03
432 618 0.43
433 1 0.00
435 39 0.03
436 131 0.09
437 2 0.00
438 3 0.00
439 1 0.00
441 2 0.00
442 2 0.00
444 117 0.08
445 40 0.03
448 93 0.07
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (430 bp):
GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
CAAATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGGAGAGCAGATCGAAGAT
AACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATTTGGCATCTCTGTAGCG
GCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGATT
TGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:84551861 original size:14 final size:15
Alignment explanation
Indices: 84551837--84551866 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
84551827 CTTTGTTCAT
84551837 TTTTCATTTATTTTA
1 TTTTCATTTATTTTA
84551852 TTTT-ATTTATTTTA
1 TTTTCATTTATTTTA
84551866 T
1 T
84551867 ATATATATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCATTTATTTTA
Found at i:84552469 original size:2 final size:2
Alignment explanation
Indices: 84552462--84552499 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
84552452 TCTTTTTATG
84552462 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84552500 ATTTAGCTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84552792 original size:19 final size:19
Alignment explanation
Indices: 84552768--84552805 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
84552758 TTGAGATTGC
*
84552768 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
84552787 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
84552806 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:84555053 original size:26 final size:25
Alignment explanation
Indices: 84555011--84555064 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
84555001 AATTTTGAGG
*
84555011 ATTAAATTTAGTATTTAATATTAGA
1 ATTAAATTTAATATTTAATATTAGA
* *
84555036 ATTAAATGTTAATGTTTAATATTATA
1 ATTAAAT-TTAATATTTAATATTAGA
84555062 ATT
1 ATT
84555065 TCGTTACACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (25 bp):
ATTAAATTTAATATTTAATATTAGA
Found at i:84557664 original size:2 final size:2
Alignment explanation
Indices: 84557657--84557698 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
84557647 TTCAATGTTT
*
84557657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84557699 ATTTTGGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84558204 original size:15 final size:16
Alignment explanation
Indices: 84558184--84558218 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
84558174 TATAGAATAT
84558184 AATAAAATAT-TAAAA
1 AATAAAATATATAAAA
84558199 AAT-AAATATATAAAA
1 AATAAAATATATAAAA
84558214 AATAA
1 AATAA
84558219 GACAGTGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.33
15 11 0.61
16 1 0.06
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAAATATATAAAA
Found at i:84558596 original size:2 final size:2
Alignment explanation
Indices: 84558589--84558613 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84558579 TTAAATATCT
84558589 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
84558614 GCATTGGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84576739 original size:37 final size:37
Alignment explanation
Indices: 84576688--84576769 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
84576678 CATCAAATAA
84576688 TCATATTTCATGTATATCATGTAAATACCAGTAATAGT
1 TCATA-TTCATGTATATCATGTAAATACCAGTAATAGT
*
84576726 TCATATTCATGTATTTCATGTAAATACCAGTAATAGT
1 TCATATTCATGTATATCATGTAAATACCAGTAATAGT
84576763 TCATATT
1 TCATATT
84576770 GAACTCATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 38 0.88
38 5 0.12
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.41
Consensus pattern (37 bp):
TCATATTCATGTATATCATGTAAATACCAGTAATAGT
Found at i:84576930 original size:25 final size:24
Alignment explanation
Indices: 84576896--84576965 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
84576886 TATGTTAATA
84576896 CGAGCTGAATATCGGAAAGCTCATG
1 CGAGCTGAATATCGG-AAGCTCATG
84576921 CGAGCTGAATAAT-GGAAGCTCATG
1 CGAGCTGAAT-ATCGGAAGCTCATG
* * *
84576945 CAAGTTGAGTATCGGGAAGCT
1 CGAGCTGAATATC-GGAAGCT
84576966 TATAAGAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 2 0.05
24 16 0.41
25 19 0.49
26 2 0.05
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21
Consensus pattern (24 bp):
CGAGCTGAATATCGGAAGCTCATG
Found at i:84576944 original size:24 final size:25
Alignment explanation
Indices: 84576896--84576965 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 25
84576886 TATGTTAATA
84576896 CGAGCTGAATATCGGAAAGCTCATG
1 CGAGCTGAATATCGGAAAGCTCATG
84576921 CGAGCTGAATAAT-GG-AAGCTCATG
1 CGAGCTGAAT-ATCGGAAAGCTCATG
* * * *
84576945 CAAGTTGAGTATCGGGAAGCT
1 CGAGCTGAATATCGGAAAGCT
84576966 TATAAGAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 2 0.05
24 18 0.46
25 17 0.44
26 2 0.05
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21
Consensus pattern (25 bp):
CGAGCTGAATATCGGAAAGCTCATG
Found at i:84580278 original size:22 final size:22
Alignment explanation
Indices: 84580239--84580297 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
84580229 GTTTTAAGAA
*
84580239 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
84580260 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
84580282 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
84580298 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:84580314 original size:26 final size:24
Alignment explanation
Indices: 84580268--84580325 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
84580258 ATTTGTTTTA
*
84580268 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
84580292 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
84580318 -T-TTTATTT
1 ATATTTATTT
84580326 AATAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 4 0.13
24 9 0.29
25 5 0.16
26 13 0.42
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:84580499 original size:21 final size:21
Alignment explanation
Indices: 84580475--84580546 Score: 144
Period size: 21 Copynumber: 3.4 Consensus size: 21
84580465 ATTTGATCTT
84580475 GGCCCGGCCCAAACTCGGCCC
1 GGCCCGGCCCAAACTCGGCCC
84580496 GGCCCGGCCCAAACTCGGCCC
1 GGCCCGGCCCAAACTCGGCCC
84580517 GGCCCGGCCCAAACTCGGCCC
1 GGCCCGGCCCAAACTCGGCCC
84580538 GGCCCGGCC
1 GGCCCGGCC
84580547 AATAATCACC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.12, C:0.53, G:0.31, T:0.04
Consensus pattern (21 bp):
GGCCCGGCCCAAACTCGGCCC
Found at i:84581077 original size:2 final size:2
Alignment explanation
Indices: 84581070--84581097 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84581060 TCCAAAGAAA
84581070 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
84581098 CAATGTACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:84582078 original size:41 final size:41
Alignment explanation
Indices: 84581975--84582182 Score: 248
Period size: 41 Copynumber: 5.1 Consensus size: 41
84581965 AAAATCGAAT
* * * *
84581975 AGAT-TGAGTATTAGTGGCGCTTTTAAAAAAAG-GCCGCTAA
1 AGATCTGAGCATTAGCGGCG-TTTTTAAGAAAGCGCCGCTAA
84582015 AGAT-TGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* **
84582055 AGATCTAAGCATTAGCGGCGTTTTTAAGAAAGCGTAGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
84582096 AGATCTGAGCATTAGCAGCGTTTTTAAGAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* * *
84582137 AGATC-GAGCATTAGCGACGCTTTTTTAA-AAA-CGCCACTAT
1 AGATCTGAGCATTAGCG--GCGTTTTTAAGAAAGCGCCGCTAA
84582177 AGATCT
1 AGATCT
84582183 AAACTATTTT
Statistics
Matches: 148, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 10 0.07
40 51 0.34
41 78 0.53
42 9 0.06
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (41 bp):
AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:84582911 original size:22 final size:21
Alignment explanation
Indices: 84582821--84582907 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 21
84582811 CACTAGACCC
84582821 TAAATCTCAAATCATAAACCCT
1 TAAATCTCAAATCATAAA-CCT
* *
84582843 TAAAACT-ATAAACGATAAACCT
1 TAAATCTCA-AATC-ATAAACCT
* * * *
84582865 T-AATCCCAACACCCTAAACCC
1 TAAATCTCAA-ATCATAAACCT
84582886 TAAATCTCAAATCATAAACCT
1 TAAATCTCAAATCATAAACCT
84582907 T
1 T
84582908 TAAAACTCCA
Statistics
Matches: 49, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
21 21 0.43
22 23 0.47
23 5 0.10
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (21 bp):
TAAATCTCAAATCATAAACCT
Found at i:84582932 original size:14 final size:14
Alignment explanation
Indices: 84582910--84582967 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
84582900 TAAACCTTTA
*
84582910 AAACTCCAACCCTT
1 AAACCCCAACCCTT
*
84582924 AAACCCCAACACC-C
1 AAACCCCAAC-CCTT
*
84582938 AAA-CCCAATCCTT
1 AAACCCCAACCCTT
*
84582951 AAACCCCAAGCCTT
1 AAACCCCAACCCTT
84582965 AAA
1 AAA
84582968 ACTAACTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 2 0.06
13 8 0.22
14 24 0.67
15 2 0.06
ACGTcount: A:0.41, C:0.43, G:0.02, T:0.14
Consensus pattern (14 bp):
AAACCCCAACCCTT
Found at i:84583016 original size:14 final size:14
Alignment explanation
Indices: 84582999--84583044 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
84582989 CTGTAGATCA
84582999 TAAATCCTAAACCC
1 TAAATCCTAAACCC
84583013 TAAA--CTATAACCC
1 TAAATCCTA-AACCC
*
84583026 ATAAATCATAAACCC
1 -TAAATCCTAAACCC
84583041 TAAA
1 TAAA
84583045 ATCTAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
12 3 0.11
13 5 0.19
14 12 0.44
15 5 0.19
16 2 0.07
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAATCCTAAACCC
Found at i:84583212 original size:9 final size:8
Alignment explanation
Indices: 84583194--84583267 Score: 69
Period size: 8 Copynumber: 8.8 Consensus size: 8
84583184 TTTATATGTT
*
84583194 AATTTAAA
1 AATTAAAA
84583202 AATTATAAA
1 AATTA-AAA
84583211 AATCTTAAAAAA
1 AA--TT-AAA-A
84583223 AATTAAAA
1 AATTAAAA
84583231 AATTAAAA
1 AATTAAAA
84583239 AATT-AAA
1 AATTAAAA
84583246 AATTAAAA
1 AATTAAAA
*
84583254 ACTTAAAA
1 AATTAAAA
*
84583262 ATTTAA
1 AATTAA
84583268 TATTTAATAT
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.12
8 32 0.56
9 8 0.14
10 2 0.04
11 4 0.07
12 4 0.07
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTAAAA
Found at i:84583230 original size:8 final size:8
Alignment explanation
Indices: 84583219--84583267 Score: 73
Period size: 8 Copynumber: 6.2 Consensus size: 8
84583209 AAAATCTTAA
84583219 AAAAAATT
1 AAAAAATT
84583227 AAAAAATT
1 AAAAAATT
84583235 AAAAAATT
1 AAAAAATT
84583243 -AAAAATT
1 AAAAAATT
*
84583250 AAAAACTT
1 AAAAAATT
*
84583258 AAAAATTT
1 AAAAAATT
84583266 AA
1 AA
84583268 TATTTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAAATT
Found at i:84583246 original size:15 final size:15
Alignment explanation
Indices: 84583219--84583264 Score: 74
Period size: 15 Copynumber: 3.0 Consensus size: 15
84583209 AAAATCTTAA
84583219 AAAAAATTAAAAAATT
1 AAAAAATT-AAAAATT
84583235 AAAAAATTAAAAATT
1 AAAAAATTAAAAATT
*
84583250 AAAAACTTAAAAATT
1 AAAAAATTAAAAATT
84583265 TAATATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 21 0.72
16 8 0.28
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAAATTAAAAATT
Found at i:84583250 original size:23 final size:23
Alignment explanation
Indices: 84583220--84583267 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
84583210 AAATCTTAAA
84583220 AAAAATTAAAAAATTAAAAAATT
1 AAAAATTAAAAAATTAAAAAATT
* *
84583243 AAAAATTAAAAACTTAAAAATTT
1 AAAAATTAAAAAATTAAAAAATT
84583266 AA
1 AA
84583268 TATTTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAAATTAAAAAATTAAAAAATT
Found at i:84584613 original size:154 final size:154
Alignment explanation
Indices: 84584306--84584600 Score: 554
Period size: 154 Copynumber: 1.9 Consensus size: 154
84584296 GTAAGATAGA
* * *
84584306 TTGATTTCACTGATTTTAGGCTTGAATTTTACGTTTTTCAAAGAAAAAGTTTGCTTCCTTCATCA
1 TTGATTTCACTGATTTTAGGCTTGAATTTTACATTCTTCAAAGAAAAAATTTGCTTCCTTCATCA
84584371 ACTGTCATTTTATATGGTAGCAGACATTGATACCTTTGATAGCATTCTGTGGTGTATAGTTTTTA
66 ACTGTCATTTTATATGGTAGCAGACATTGATACCTTTGATAGCATTCTGTGGTGTATAGTTTTTA
84584436 TTTTATCTTATACTCTGCAGAATG
131 TTTTATCTTATACTCTGCAGAATG
84584460 TTGATTTCACTGATTTTAGGCTTGAATTTTACATTCTTCAAAGAAAAAATTTGCTTCCTTCATCA
1 TTGATTTCACTGATTTTAGGCTTGAATTTTACATTCTTCAAAGAAAAAATTTGCTTCCTTCATCA
*
84584525 ACTGTCATTTTATATGGTAGCAGACATTGATACCTTTGATAGCATTCTGTGTTGTATAGTTTTTA
66 ACTGTCATTTTATATGGTAGCAGACATTGATACCTTTGATAGCATTCTGTGGTGTATAGTTTTTA
84584590 TTTTATCTTAT
131 TTTTATCTTAT
84584601 TTTTTGCAGA
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 137 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (154 bp):
TTGATTTCACTGATTTTAGGCTTGAATTTTACATTCTTCAAAGAAAAAATTTGCTTCCTTCATCA
ACTGTCATTTTATATGGTAGCAGACATTGATACCTTTGATAGCATTCTGTGGTGTATAGTTTTTA
TTTTATCTTATACTCTGCAGAATG
Found at i:84588984 original size:10 final size:10
Alignment explanation
Indices: 84588969--84588993 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84588959 TTTCATGACC
84588969 TTTATAATAT
1 TTTATAATAT
84588979 TTTATAATAT
1 TTTATAATAT
84588989 TTTAT
1 TTTAT
84588994 TTTTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTATAATAT
Found at i:84590570 original size:25 final size:25
Alignment explanation
Indices: 84590542--84590594 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
84590532 TTTATTAAAC
* **
84590542 TTATTATTTATTATTATATTTAATT
1 TTATTATTAATTAAAATATTTAATT
84590567 TTATTATTAATTAAAATATTTAATT
1 TTATTATTAATTAAAATATTTAATT
84590592 TTA
1 TTA
84590595 GAAAATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TTATTATTAATTAAAATATTTAATT
Found at i:84590635 original size:19 final size:18
Alignment explanation
Indices: 84590599--84590637 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
84590589 ATTTTAGAAA
*
84590599 ATATTTTTATTGATATTT
1 ATATTTTTATTAATATTT
*
84590617 ATATTTTTTTTAATAATTT
1 ATATTTTTATTAAT-ATTT
84590636 AT
1 AT
84590638 GTAAACTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
ATATTTTTATTAATATTT
Found at i:84593722 original size:26 final size:26
Alignment explanation
Indices: 84593693--84593748 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
84593683 TGATACAAAT
*
84593693 TGATAATGGGTTTGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84593719 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84593745 TGAT
1 TGAT
84593749 TGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:84597398 original size:30 final size:31
Alignment explanation
Indices: 84597363--84597426 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
84597353 GAAATAGGGA
* *
84597363 AAAAGAGAGCAAAAATTCAATT-TAATTTGG
1 AAAAGAAAGCAAAAATTCAATTGTAATTAGG
* * *
84597393 AAAAGAAAGCTATAGTTCAATTGTAATTAGG
1 AAAAGAAAGCAAAAATTCAATTGTAATTAGG
84597424 AAA
1 AAA
84597427 TTTTCAAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 18 0.64
31 10 0.36
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.27
Consensus pattern (31 bp):
AAAAGAAAGCAAAAATTCAATTGTAATTAGG
Found at i:84601838 original size:4 final size:5
Alignment explanation
Indices: 84601813--84601845 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
84601803 GAGCCTGTGA
84601813 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
84601846 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:84617144 original size:48 final size:48
Alignment explanation
Indices: 84617068--84617346 Score: 186
Period size: 48 Copynumber: 5.8 Consensus size: 48
84617058 TGATATGTGT
* * * *
84617068 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAAGAGA
* * * * * *
84617116 GCCATTGTAAGACCATGTCCGGGACATGGCATCGACATTGATAAGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAAGAGA
* * * * * * *
84617164 GCTAGTGTAAGATCATGTCTGGGACATGGTATCGGC-GTCGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAT-GATAAGAGA
* * * * * * ** *
84617212 GCTAGTGCAGGACTATGTCTGGGACACGGTAAAGGCCACAT--TATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-ATGATAAGAGA
* * * * * * * *
84617260 GCCAATGTAAGACCATTTCTGAGACATGGCATCGACATTGAGACGAGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAAGAGA
* *
84617308 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAT
84617347 TTACCCTCTT
Statistics
Matches: 174, Mismatches: 51, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 168 0.97
49 1 0.01
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAAGAGA
Found at i:84624916 original size:48 final size:48
Alignment explanation
Indices: 84624816--84625177 Score: 323
Period size: 48 Copynumber: 7.5 Consensus size: 48
84624806 TATGTATGCC
* * * ** * * * * *
84624816 AGTGTAAGACCATGTTTGGAACATGGTATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
* *** * * *
84624864 AGTGTAAGACCATGTCTGGGAAACAACATTGGTGTTGATAGGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
* ** *
84624912 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTCAATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
84624960 AGTGTAAGACCATGT-TCGGGACATGGCATCGGCGTTGATAGGTGCGCT
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGGCGTTGATAGGTGCGCT
* * * **
84625008 AGTGTAAAACCATGTCTGGGAGATGGCATCGGCGTTGATATGTATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
* * *** * * *
84625056 AGTGTAAGACCATGTCTGGGACACGGCAACGGC-CACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA-TAGGTGCGCT
* * * * * * *
84625104 AGTTTAAGACCATGTCTAGGACATGGCATCGGCATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
84625152 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
84625178 AATTGGCAAT
Statistics
Matches: 255, Mismatches: 55, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
47 2 0.01
48 251 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATAGGTGCGCT
Found at i:84625065 original size:144 final size:144
Alignment explanation
Indices: 84624816--84625177 Score: 420
Period size: 144 Copynumber: 2.5 Consensus size: 144
84624806 TATGTATGCC
* * * * * * *
84624816 AGTGTAAGACCATGTTTGGAACATGGTATCGGCAATGTTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTCGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTCT
*** * * * * * **
84624881 GGGAAACAACATTGGTGTTGATAGGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
66 GGGAAATGGCATCGGCGTTGATAGGTATGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCC
* * *
84624946 TCAATATGTGCGCT
131 ACAATATGAGAGCT
* * * * *
84624960 AGTGTAAGACCATGTTCGGGACATGGCATCGGCGTTGATAGGTGCGCTAGTGTAAAACCATGTCT
1 AGTGTAAGACCATGTTCGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTCT
* *
84625025 GGGAGATGGCATCGGCGTTGATATGTATGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCC
66 GGGAAATGGCATCGGCGTTGATAGGTATGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCC
*
84625090 ACATTATGAGAGCT
131 ACAATATGAGAGCT
* * *
84625104 AGTTTAAGACCATG-TCTAGGACATGGCATCGGCATTGAAACGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTTC-GGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTC
*
84625168 TGGGACATGG
65 TGGGAAATGG
84625178 AATTGGCAAT
Statistics
Matches: 181, Mismatches: 36, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
143 2 0.01
144 179 0.99
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (144 bp):
AGTGTAAGACCATGTTCGGGACATGGCATCGGCATTGATACGAGAGCTAGTGTAAGACCATGTCT
GGGAAATGGCATCGGCGTTGATAGGTATGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCC
ACAATATGAGAGCT
Found at i:84627572 original size:2 final size:2
Alignment explanation
Indices: 84627565--84627593 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84627555 TTGTACATAC
84627565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84627594 ATGTTATTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84628007 original size:20 final size:19
Alignment explanation
Indices: 84627984--84628028 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
84627974 CTCCTGTTTG
*
84627984 CACTTCGGTACCCCTGTGTA
1 CACTTCGGT-CCCCTGTATA
* *
84628004 CACTTTGGTGCCCTGTATA
1 CACTTCGGTCCCCTGTATA
84628023 CACTTC
1 CACTTC
84628029 TGTGTCTCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (19 bp):
CACTTCGGTCCCCTGTATA
Found at i:84634691 original size:2 final size:2
Alignment explanation
Indices: 84634684--84634712 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84634674 TTTAAAACTA
84634684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84634713 AAGAGCGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84635488 original size:21 final size:21
Alignment explanation
Indices: 84635446--84635485 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
84635436 CTCATATTAT
* *
84635446 TTTTAATTTTTATTTAATTTA
1 TTTTAATATTTATATAATTTA
84635467 TTTTAATATTTA-ATAATTT
1 TTTTAATATTTATATAATTT
84635486 TATACATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTAATATTTATATAATTTA
Found at i:84636966 original size:22 final size:21
Alignment explanation
Indices: 84636924--84636982 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
84636914 TTTAAATTCA
* *
84636924 TTTTCATATCATTTTTGTTAT
1 TTTTCATATTATTATTGTTAT
*
84636945 TTTTTATATTATTATTGTTTAT
1 TTTTCATATTATTATTG-TTAT
* *
84636967 TATTCCTATTATTATT
1 TTTTCATATTATTATT
84636983 TATCATCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
21 14 0.45
22 17 0.55
ACGTcount: A:0.22, C:0.07, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTTCATATTATTATTGTTAT
Found at i:84640895 original size:14 final size:12
Alignment explanation
Indices: 84640870--84640894 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84640860 TTATGGCACG
84640870 CGGCCTACCACA
1 CGGCCTACCACA
84640882 CGGCCTACCACA
1 CGGCCTACCACA
84640894 C
1 C
84640895 AGTCGTGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.52, G:0.16, T:0.08
Consensus pattern (12 bp):
CGGCCTACCACA
Found at i:84643246 original size:48 final size:48
Alignment explanation
Indices: 84643148--84643415 Score: 225
Period size: 48 Copynumber: 5.6 Consensus size: 48
84643138 CATGTTGAGT
* * * * **** *
84643148 TGCCATGTCCCATACATAGTCTTACGCTAGCTCTCGTCTCAATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATTGCCGA
* ** * *
84643196 TGCCATGTCCCAGACAAGGTCTTACTTTCGCTCTCAAAACATTGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATTGCCGA
* * * * ** *
84643244 TGCCATGTTCCAAACATGGTCTTACACTGGCTCTTATAATGTGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATTGCCGA
** * *
84643292 TGTAATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATTGCCGA
* * * * * *
84643340 TGCCATGTTCCAAAGATGGTCTTACATTGGCTCTC-ATA-ATGTGACCAA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACAT-TG-CCGA
84643388 TGCCATGTCCCAGACATGGTCTTACACT
1 TGCCATGTCCCAGACATGGTCTTACACT
84643416 AACACACATA
Statistics
Matches: 171, Mismatches: 47, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
46 2 0.01
47 3 0.02
48 166 0.97
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAACATTGCCGA
Found at i:84643277 original size:96 final size:95
Alignment explanation
Indices: 84643148--84643415 Score: 301
Period size: 96 Copynumber: 2.8 Consensus size: 95
84643138 CATGTTGAGT
* * * * * *
84643148 TGCCATGTCCCATACATAGTCTTACGCTAGCTCTCGTCTCAA-TGCCGATGCCATGTCCCAGACA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCTC-TAT-AAGTGCCGATGCCATGTCCCAGACA
* **
84643212 AGGTCTTACTTTCGCTCTCAAAACATTG-CTGA
64 TGGTCTTACACTCGCTCTCAAAACATTGTC-GA
**
84643244 TGCCATGTTCCAAACATGGTCTTACACTGGCTCT-TATAATGTGGCCGATGTAATGTCCCAGACA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCTCTATAA-GT-GCCGATGCCATGTCCCAGACA
* *
84643308 TGGTCTTACACTGGCTCTCATAACATTGTCGA
64 TGGTCTTACACTCGCTCTCAAAACATTGTCGA
* * *
84643340 TGCCATGTTCCAAAGATGGTCTTACATTGGCTCTC-ATAATGTGACCAATGCCATGTCCCAGACA
1 TGCCATGTTCCAAACATGGTCTTACACTGGCTCTCTATAA-GTG-CCGATGCCATGTCCCAGACA
84643404 TGGTCTTACACT
64 TGGTCTTACACT
84643416 AACACACATA
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
93 2 0.01
94 2 0.01
95 2 0.01
96 141 0.95
97 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (95 bp):
TGCCATGTTCCAAACATGGTCTTACACTGGCTCTCTATAAGTGCCGATGCCATGTCCCAGACATG
GTCTTACACTCGCTCTCAAAACATTGTCGA
Found at i:84643361 original size:144 final size:144
Alignment explanation
Indices: 84643152--84643415 Score: 316
Period size: 144 Copynumber: 1.8 Consensus size: 144
84643142 TTGAGTTGCC
* * * ** *
84643152 ATGTCCCATACATAGTCTTACGCTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACAAGGTC
1 ATGTCCCAGACATAGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACAAGGTC
* ** *
84643217 TTACTTTCGCTCTCAAAACAT-TG-CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTA
66 TTACATTCGCTCTC-AAA-ATGTGACCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTA
84643280 TAATGTGGCCGATGTA
129 TAATGTGGCCGATGTA
* * * * * * *
84643296 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGTCGATGCCATGTTCCAAAGATGGTC
1 ATGTCCCAGACATAGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACAAGGTC
* * *
84643361 TTACATTGGCTCTCATAATGTGACCAATGCCATGTCCCAGACATGGTCTTACACT
66 TTACATTCGCTCTCAAAATGTGACCAATGCCATGTCCCAAACATGGTCTTACACT
84643416 AACACACATA
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
142 2 0.02
143 4 0.04
144 92 0.94
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (144 bp):
ATGTCCCAGACATAGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTCCCAAACAAGGTC
TTACATTCGCTCTCAAAATGTGACCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTATA
ATGTGGCCGATGTA
Found at i:84651038 original size:48 final size:46
Alignment explanation
Indices: 84650986--84651336 Score: 280
Period size: 48 Copynumber: 7.3 Consensus size: 46
84650976 CATGTCTCTG
* * *
84650986 ACATGGTCTTATACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAA
1 ACATGGTCTTACACTGGCTCTC-TAT-AATGTTGATGCCATGTCCCAA
* * ** *
84651034 ACATGGTTTTACTCTGGCTCTCGTA-ACATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTC-TATA-A-TGTTGATGCCATGTCCCAA
* * *
84651082 ACATGGTCATACACTGGCTCTC-ATAATGTGGTCGATGTCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCTATAATGT--T-GATGCCATGTCCCAA
* * *
84651130 ACATAGTCTTACACTGGCTCTC-ATTACATTGCTGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTCTA-TA-A-TGTTGATGCCATGTCCCAA
*
84651178 ACATGGTCTTACACTGGCTCTC-ATAATGTGGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCTATAATGT--T-GATGCCATGTCCCAA
* * *
84651226 ACATGGTCTTACACTGGCTCTCATAATATTGTCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTC-T-ATAATGTTGATGCCATGTCCCAA
* * * ** *
84651274 AGATGGTCTTACACTGGCTTTC-ATAATGTGGCCAATGTTATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCTATAATGTTG---ATGCCATGTCCCAA
84651322 ACATGGTCTTACACT
1 ACATGGTCTTACACT
84651337 AACACACATA
Statistics
Matches: 246, Mismatches: 39, Indels: 36
0.77 0.12 0.11
Matches are distributed among these distances:
45 11 0.04
46 4 0.02
47 5 0.02
48 214 0.87
49 3 0.01
50 1 0.00
51 8 0.03
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (46 bp):
ACATGGTCTTACACTGGCTCTCTATAATGTTGATGCCATGTCCCAA
Found at i:84651103 original size:96 final size:95
Alignment explanation
Indices: 84651019--84651336 Score: 456
Period size: 96 Copynumber: 3.3 Consensus size: 95
84651009 TCTCAATGTT
* * * *
84651019 GATGCCATGTCCCAAACATGGTTTTACTCTGGCTCTCGTAACATTGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
*
84651084 ATGGTCATACACTGGCTCTCATAATGTGGTC
66 ATGGTCTTACACTGGCTCTCATAATGT-GTC
* * * *
84651115 GATGTCATGTCCCAGACATAGTCTTACACTGGCTCTCATTACATTGCTGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
84651180 ATGGTCTTACACTGGCTCTCATAATGTGGTC
66 ATGGTCTTACACTGGCTCTCATAATGT-GTC
* * *
84651211 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATTGTCGATGCCATGTTCCAAAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
* *
84651276 ATGGTCTTACACTGGCTTTCATAATGTGGCC
66 ATGGTCTTACACTGGCTCTCATAATGT-GTC
* **
84651307 AATGTTATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
84651337 AACACACATA
Statistics
Matches: 201, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 201 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCTCATAATGTGTC
Found at i:84651178 original size:144 final size:144
Alignment explanation
Indices: 84650972--84651297 Score: 402
Period size: 144 Copynumber: 2.3 Consensus size: 144
84650962 GTCGAGGCCA
* * * * * *
84650972 ATGTCATGTCTCTGACATGGTCTTATACTAGCTCTCGTCTCAATGTTGATGCCATGTCCCAAACA
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATGCTGATGCCATGTCCCAAACA
* * * * *
84651037 TGGTTTTACTCTGGCTCTCGTAACATTGCCGATGCCATGTTCCAAACATGGTCATACACTGGCTC
66 TGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACATGGTCATACACTGGCTC
*
84651102 TCATAATGTGGTCG
131 TCATAATATGGTCG
* * *
84651116 ATGTCATGTCCCAGACATAGTCTTACACTGGCTCTCAT-TACATTGCTGATGCCATGTTCCAAAC
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-CAATGCTGATGCCATGTCCCAAAC
** * * *
84651180 ATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
65 ATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACATGGTCATACACTGGCT
*
84651245 CTCATAATATTGTCG
130 CTCATAATATGGTCG
* * * * *
84651260 ATGCCATGTTCCAAAGATGGTCTTACACTGGCTTTCAT
1 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
84651298 AATGTGGCCA
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 1 0.01
144 153 0.99
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (144 bp):
ATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATGCTGATGCCATGTCCCAAACA
TGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACATGGTCATACACTGGCTC
TCATAATATGGTCG
Found at i:84651326 original size:144 final size:144
Alignment explanation
Indices: 84651020--84651336 Score: 386
Period size: 144 Copynumber: 2.2 Consensus size: 144
84651010 CTCAATGTTG
* * * * *
84651020 ATGCCATGTCCCAAACATGGTTTTACTCTGGCTCTCGTAACATTGCCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACA
* * *
84651085 TGGTCATACACTGGCTCTCATAATGTGGTCGATGTCATGTCCCAGACATAGTCTTACACTGGCTC
66 TGGTCATACACTGGCTCTCATAATATGGTCGATGCCATGTCCCAAACATAGTCTTACACTGGCTC
**
84651150 TCATTACATTGCTG
131 TCATTACATTGCCA
* ** * *
84651164 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACA
* * * * * *
84651229 TGGTCTTACACTGGCTCTCATAATATTGTCGATGCCATGTTCCAAAGATGGTCTTACACTGGCTT
66 TGGTCATACACTGGCTCTCATAATATGGTCGATGCCATGTCCCAAACATAGTCTTACACTGGCTC
84651294 TCA-TA-ATGTGGCCA
131 TCATTACAT-T-GCCA
** *
84651308 ATGTTATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAAACATGGTCTTACACT
84651337 AACACACATA
Statistics
Matches: 146, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
142 2 0.01
143 3 0.02
144 141 0.97
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCAAACA
TGGTCATACACTGGCTCTCATAATATGGTCGATGCCATGTCCCAAACATAGTCTTACACTGGCTC
TCATTACATTGCCA
Found at i:84658371 original size:32 final size:32
Alignment explanation
Indices: 84658333--84658403 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
84658323 TTTGGAGAGT
84658333 CACACGCCCATGTGGGTTGGGCTGTGTGGTCA
1 CACACGCCCATGTGGGTTGGGCTGTGTGGTCA
*
84658365 CACACGCCCGTGTGGGTTGGGCTGTGTGGTCA
1 CACACGCCCATGTGGGTTGGGCTGTGTGGTCA
84658397 CACACGC
1 CACACGC
84658404 TCATATGGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.13, C:0.28, G:0.37, T:0.23
Consensus pattern (32 bp):
CACACGCCCATGTGGGTTGGGCTGTGTGGTCA
Found at i:84659076 original size:21 final size:21
Alignment explanation
Indices: 84659050--84659092 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
84659040 AGACTTACAA
84659050 GCCATCACCCATCTAAGCCAC
1 GCCATCACCCATCTAAGCCAC
84659071 GCCATCACCCATCTAAGCCAC
1 GCCATCACCCATCTAAGCCAC
84659092 G
1 G
84659093 TCTCATGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.47, G:0.12, T:0.14
Consensus pattern (21 bp):
GCCATCACCCATCTAAGCCAC
Found at i:84668092 original size:22 final size:23
Alignment explanation
Indices: 84668067--84668113 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
84668057 ATTTAAACAT
84668067 AATCACCTATA-TTTGTTTTTGA
1 AATCACCTATATTTTGTTTTTGA
*
84668089 AATCACCTTTATTTTGTTTTTGA
1 AATCACCTATATTTTGTTTTTGA
84668112 AA
1 AA
84668114 ACTTTTAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.51
Consensus pattern (23 bp):
AATCACCTATATTTTGTTTTTGA
Found at i:84671291 original size:19 final size:19
Alignment explanation
Indices: 84671242--84671291 Score: 82
Period size: 20 Copynumber: 2.6 Consensus size: 19
84671232 TCCAAGAATT
84671242 TGATAGAGTTTTGAGAGGA
1 TGATAGAGTTTTGAGAGGA
*
84671261 TAATATGAGTTTTGAGAGGA
1 TGATA-GAGTTTTGAGAGGA
84671281 TGATAGAGTTT
1 TGATAGAGTTT
84671292 AAATCACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (19 bp):
TGATAGAGTTTTGAGAGGA
Found at i:84672065 original size:16 final size:16
Alignment explanation
Indices: 84672046--84672095 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
84672036 ATTTTAACAT
84672046 ATTAATAATTTATGAA
1 ATTAATAATTTATGAA
* *
84672062 ATT-A-AATTT-TTAC
1 ATTAATAATTTATGAA
84672075 ATTAATAATTTATGAA
1 ATTAATAATTTATGAA
84672091 ATTAA
1 ATTAA
84672096 ATTTTTACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 5 0.19
14 6 0.22
15 6 0.22
16 10 0.37
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (16 bp):
ATTAATAATTTATGAA
Found at i:84672087 original size:29 final size:29
Alignment explanation
Indices: 84672046--84672105 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
84672036 ATTTTAACAT
84672046 ATTAATAATTTATGAAATTAAATTTTTAC
1 ATTAATAATTTATGAAATTAAATTTTTAC
84672075 ATTAATAATTTATGAAATTAAATTTTTAC
1 ATTAATAATTTATGAAATTAAATTTTTAC
84672104 AT
1 AT
84672106 ACACATATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (29 bp):
ATTAATAATTTATGAAATTAAATTTTTAC
Found at i:84672779 original size:7 final size:7
Alignment explanation
Indices: 84672718--84672787 Score: 54
Period size: 7 Copynumber: 9.7 Consensus size: 7
84672708 TATAATGATA
84672718 ATTATTT
1 ATTATTT
84672725 ATTATTT
1 ATTATTT
84672732 ATTA-TT
1 ATTATTT
84672738 ATTATTTT
1 ATTA-TTT
**
84672746 AAAATTT
1 ATTATTT
*
84672753 CATAACTTT
1 -ATTA-TTT
*
84672762 CATAATTT
1 -ATTATTT
84672770 ATTATTT
1 ATTATTT
84672777 ATTA-TT
1 ATTATTT
84672783 ATTAT
1 ATTAT
84672788 GTATGGATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
6 12 0.22
7 24 0.44
8 10 0.19
9 8 0.15
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.61
Consensus pattern (7 bp):
ATTATTT
Found at i:84673492 original size:12 final size:12
Alignment explanation
Indices: 84673475--84673501 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
84673465 CTGGTGGTTG
84673475 GAATATCATAGA
1 GAATATCATAGA
84673487 GAATATCATAGA
1 GAATATCATAGA
84673499 GAA
1 GAA
84673502 AGAATAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (12 bp):
GAATATCATAGA
Found at i:84677630 original size:28 final size:28
Alignment explanation
Indices: 84677561--84677661 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84677551 GACAAGATTG
* * * *
84677561 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
84677591 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84677619 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
84677648 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84677662 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84685601 original size:28 final size:28
Alignment explanation
Indices: 84685532--84685632 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84685522 GACAAGATTG
* * * *
84685532 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
84685562 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84685590 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
84685619 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84685633 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84690836 original size:27 final size:27
Alignment explanation
Indices: 84690775--84690840 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 27
84690765 ATCACTATAC
* *
84690775 AAACAATATAAAAATTTTAAAACAAGTA
1 AAACGATAT-AAAAGTTTAAAACAAGTA
* * *
84690803 ATA-GATATAAAAGTTTAAAATAGGTA
1 AAACGATATAAAAGTTTAAAACAAGTA
84690829 AAACGATA-AAAA
1 AAACGATATAAAA
84690841 TAAATAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 21 0.68
27 8 0.26
28 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (27 bp):
AAACGATATAAAAGTTTAAAACAAGTA
Found at i:84690924 original size:3 final size:3
Alignment explanation
Indices: 84690918--84690963 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
84690908 ACATAGAAAT
84690918 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
84690964 AAGTTTTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84691146 original size:17 final size:15
Alignment explanation
Indices: 84691106--84691151 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
84691096 ATAGGAATAG
*
84691106 AAATAGAAATACAAT
1 AAATAGAAATATAAT
84691121 AAATAGAAATATAAT
1 AAATAGAAATATAAT
84691136 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
84691152 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.24
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:84691154 original size:44 final size:43
Alignment explanation
Indices: 84691101--84691186 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 43
84691091 TATAAATAGG
84691101 AATAGAAATAG-AAATACAATAAATAGA-AATATAATAATAGTAGA
1 AATAGAAATAGAAAATA-AA-AAATAGATAA-ATAATAATAGTAGA
* *
84691145 AATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AATAGAAATAGA-AAATAAAAAATAGATAAATAATAATAGTA
84691187 TTAGAATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
44 28 0.76
45 4 0.11
46 5 0.14
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.26
Consensus pattern (43 bp):
AATAGAAATAGAAAATAAAAAATAGATAAATAATAATAGTAGA
Found at i:84691171 original size:15 final size:14
Alignment explanation
Indices: 84691121--84691184 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 14
84691111 GAAATACAAT
84691121 AAATAGA-AATATAA
1 AAATAGATAA-ATAA
* * *
84691135 TAATAGTAGAAATAT
1 AAATAG-ATAAATAA
84691150 AAATAGATAAATAA
1 AAATAGATAAATAA
84691164 AAATTAGATAAATAA
1 AAA-TAGATAAATAA
*
84691179 TAATAG
1 AAATAG
84691185 TATTAGAATG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
14 17 0.41
15 22 0.54
16 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (14 bp):
AAATAGATAAATAA
Found at i:84692299 original size:44 final size:44
Alignment explanation
Indices: 84692251--84692482 Score: 127
Period size: 44 Copynumber: 5.3 Consensus size: 44
84692241 CCTGTTACCT
84692251 TACTGCTTAGGGGGTTAAGGCTCTCTGTCTTCGATCTGCTCCAC
1 TACTGCTTAGGGGGTTAAGGCTCTCTGTCTTCGATCTGCTCCAC
* * * * * * * *
84692295 TACTGTTTAGGGAGATAA-G--ATCTGTAATTCCCCACCTGTTACC-C
1 TACTGCTTAGGGGGTTAAGGCTCTCTGT-CTT--CGATCTGCT-CCAC
* * *
84692339 TACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGGTCCAC
1 TACTGCTTAGGGGGTTAAGGCTCTCTGTCTTCGATCTGCTCCAC
* * * ** * * * * *
84692383 TACTGCTTAAGGAGATAA-TATCTGTAATTTTC-AGCCTGTTACC-C
1 TACTGCTTAGGGGGTTAAGGCTCTCT-GTCTTCGA-TCTGCT-CCAC
* * * *
84692427 TACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATTTACTCCAC
1 TACTGCTTAGGGGGTTAAGGCTCTCTGTCTTCGATCTGCTCCAC
84692471 TACTGCTTAGGG
1 TACTGCTTAGGG
84692483 AGATAAGATC
Statistics
Matches: 130, Mismatches: 44, Indels: 28
0.64 0.22 0.14
Matches are distributed among these distances:
41 5 0.04
42 2 0.02
43 8 0.06
44 102 0.78
45 8 0.06
46 2 0.02
47 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (44 bp):
TACTGCTTAGGGGGTTAAGGCTCTCTGTCTTCGATCTGCTCCAC
Found at i:84692355 original size:88 final size:88
Alignment explanation
Indices: 84692206--84692592 Score: 578
Period size: 88 Copynumber: 4.4 Consensus size: 88
84692196 GTCAGTTTCT
* * * *
84692206 CTACTACTTAGGGGGATAAGATCTGTAATTTTTAGCCTGTTACCTTACTGCTTAGGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
* *
84692271 CTCTCTGTCTTCGATCTGCTCCA
66 CTCACCGTCTTCGATCTGCTCCA
* **
84692294 CTACTGTTTAGGGAGATAAGATCTGTAATTCCCCA-CCTGTTACCCTACTGCTTAGGGGGTTAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAATT-TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
*
84692358 GCTCACCGTCTTCGATCTGGTCCA
65 GCTCACCGTCTTCGATCTGCTCCA
* *
84692382 CTACTGCTTAAGGAGATAATATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
* *
84692447 CTCACCGTCTTCGATTTACTCCA
66 CTCACCGTCTTCGATCTGCTCCA
* *
84692470 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTACTACTTAGGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
* *
84692535 CTCACCGCCTTCAATCTGCTCCA
66 CTCACCGTCTTCGATCTGCTCCA
* *
84692558 CTACTGTTTAGGGAGATAAAATCTGTAATTTTCAG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAG
84692593 TCTGCTTCAT
Statistics
Matches: 269, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
87 2 0.01
88 266 0.99
89 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.33
Consensus pattern (88 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
CTCACCGTCTTCGATCTGCTCCA
Found at i:84692518 original size:44 final size:43
Alignment explanation
Indices: 84692382--84692526 Score: 109
Period size: 44 Copynumber: 3.3 Consensus size: 43
84692372 ATCTGGTCCA
* *
84692382 CTACTGCTTAAGGAGATAATATCTGTAATTTTCAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCT-TTACC
* * * * * * *
84692426 CTACTGCTTAGGGGGTTAAG-GCT-CACCGTCTTC-G-ATTTACTCC
1 CTACTGCTTAGGGAGATAAGATCTGTA--ATTTTCAGCCTTTA--CC
84692469 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTACC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCT-TTACC
*
84692514 CTACTACTTAGGG
1 CTACTGCTTAGGG
84692527 GGTTAAGGCT
Statistics
Matches: 74, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
41 3 0.04
42 2 0.03
43 5 0.07
44 54 0.73
45 5 0.07
46 2 0.03
47 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTTTACC
Found at i:84692767 original size:45 final size:45
Alignment explanation
Indices: 84692679--84692769 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
84692669 CGGTGGCTAA
* *
84692679 AATCTGCTCCATAGTCGATACATGGAGATAAGACTCGCCATTTTC
1 AATCTGCTCCATAGTCGATACAAGGAGATAAGACTCGCAATTTTC
* * *
84692724 AATCTGTTCCATAGTTGATACAAGGAGATAAGA-TCTGTAATTTTC
1 AATCTGCTCCATAGTCGATACAAGGAGATAAGACTC-GCAATTTTC
84692769 A
1 A
84692770 GTCTACTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (45 bp):
AATCTGCTCCATAGTCGATACAAGGAGATAAGACTCGCAATTTTC
Found at i:84692773 original size:178 final size:178
Alignment explanation
Indices: 84692569--84692889 Score: 471
Period size: 178 Copynumber: 1.8 Consensus size: 178
84692559 TACTGTTTAG
* * * * * *
84692569 GGAGATAAAATCTGTAATTTTCAGTCTGCTTCATTGCTATCTCAAGAAGATAAGGCTTGTATTTT
1 GGAGATAAAATCTGTAATTTTCAGTCTACTTCATTGCTACCTCAAGAAAAGAAGACTTGTATCTT
* * * * *
84692634 CGACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGTCGATA
66 CAACCTGCTCTCTTGCTACCTCAGAAAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCAATA
*
84692699 CATGGAGATAAGACTCGCCATTTTCAATCTGTTCCATAGTTGATACAA
131 CATAGAGATAAGACTCGCCATTTTCAATCTGTTCCATAGTTGATACAA
* * *
84692747 GGAGATAAGATCTGTAATTTTCAGTCTACTTCTTTGCTACCTCAAGAAAAGAAGACTTTTATCTT
1 GGAGATAAAATCTGTAATTTTCAGTCTACTTCATTGCTACCTCAAGAAAAGAAGACTTGTATCTT
* * * *
84692812 CAACCTGCTCTCTTGCTACTTTAGAGAGATAATACCGGTGGCTAAAATCTACTCCATAGCCAATA
66 CAACCTGCTCTCTTGCTACCTCAGAAAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCAATA
84692877 CATAGAGATAAGA
131 CATAGAGATAAGA
84692890 TCTATAATTT
Statistics
Matches: 124, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
178 124 1.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (178 bp):
GGAGATAAAATCTGTAATTTTCAGTCTACTTCATTGCTACCTCAAGAAAAGAAGACTTGTATCTT
CAACCTGCTCTCTTGCTACCTCAGAAAGATAAGACCGGTGGCTAAAATCTACTCCATAGCCAATA
CATAGAGATAAGACTCGCCATTTTCAATCTGTTCCATAGTTGATACAA
Found at i:84693034 original size:133 final size:133
Alignment explanation
Indices: 84692724--84693022 Score: 411
Period size: 133 Copynumber: 2.2 Consensus size: 133
84692714 CGCCATTTTC
* ** *
84692724 AATCTGTTCCATAGTTGATACAAGGAGATAAGATCTGTAATTTTCAGTCTACTTCTTTGCTACCT
1 AATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCTTTGCTACCT
* * * * *
84692789 CAAGAAAAGAAGACTTTTATCTTCAACCTGCTCTCTTGCTACTTTAGAGAGATAATACCGGTGGC
66 CAAGAAAAGAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGACCGGTGGC
84692854 TAA
131 TAA
* * * * *
84692857 AATCTACTCCATAGCCAATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTTT-CTACC
1 AATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTT-CTTTGCTACC
* * * * *
84692921 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCTGGTGG
65 TCAAGAAAAGAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGACCGGTGG
84692986 CTAA
130 CTAA
84692990 AATCTGCTCCATAGCCGATACATGGAGATAAGA
1 AATCTGCTCCATAGCCGATACATGGAGATAAGA
84693023 CCCGCCATTT
Statistics
Matches: 143, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
133 139 0.97
134 4 0.03
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (133 bp):
AATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCTTTGCTACCT
CAAGAAAAGAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGACCGGTGGC
TAA
Found at i:84700180 original size:27 final size:27
Alignment explanation
Indices: 84700119--84700184 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 27
84700109 ATCACTATAC
* *
84700119 AAACAATATAAAAATTTTAAAACAAGTA
1 AAACGATAT-AAAAGTTTAAAACAAGTA
* * *
84700147 ATA-GATATAAAAGTTTAAAATAGGTA
1 AAACGATATAAAAGTTTAAAACAAGTA
84700173 AAACGATA-AAAA
1 AAACGATATAAAA
84700185 TAAATAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 21 0.68
27 8 0.26
28 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (27 bp):
AAACGATATAAAAGTTTAAAACAAGTA
Found at i:84700268 original size:3 final size:3
Alignment explanation
Indices: 84700262--84700307 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
84700252 ACATAGAAAT
84700262 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
84700308 AAGTTTTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84700485 original size:17 final size:15
Alignment explanation
Indices: 84700446--84700491 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
84700436 TATAAATAGG
*
84700446 AATAGAAATACAATA
1 AATAGAAATATAATA
84700461 AATAGAAATATAATA
1 AATAGAAATATAATA
84700476 ATAGTAGAAATATAAT
1 A-A-TAGAAATATAAT
84700492 TAGATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 15 0.54
16 1 0.04
17 12 0.43
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (15 bp):
AATAGAAATATAATA
Found at i:84700490 original size:14 final size:15
Alignment explanation
Indices: 84700470--84700510 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
84700460 AAATAGAAAT
84700470 ATAATAATAGTAGAA
1 ATAATAATAGTAGAA
*
84700485 AT-ATAATTAG-ATAA
1 ATAATAA-TAGTAGAA
84700499 ATAATAATAGTA
1 ATAATAATAGTA
84700511 TTAGAATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
ATAATAATAGTAGAA
Found at i:84703733 original size:26 final size:26
Alignment explanation
Indices: 84703697--84703760 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
84703687 AGTTAAGAAA
84703697 TTATAT-A-AATAAAATGT-TTAAATT
1 TTATATAAGAATAAAAT-TATTAAATT
* *
84703721 TTATATAAGAATAATATTAGTTATATT
1 TTATATAAGAATAAAATTA-TTAAATT
84703748 TTAT-TAAGAATAA
1 TTATATAAGAATAA
84703761 TTTTTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 16 0.47
27 10 0.29
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (26 bp):
TTATATAAGAATAAAATTATTAAATT
Found at i:84706941 original size:21 final size:21
Alignment explanation
Indices: 84706894--84706941 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
84706884 ATTTTATTCC
*
84706894 TTTAA-TATTTTAAATTTGTC
1 TTTAATTATTTTAAATTTGTA
* *
84706914 TTATAATTATTTTAATTTTTTA
1 TT-TAATTATTTTAAATTTGTA
84706936 TTTAAT
1 TTTAAT
84706942 ACAAAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 7 0.30
22 14 0.61
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTAATTATTTTAAATTTGTA
Found at i:84707504 original size:21 final size:21
Alignment explanation
Indices: 84707457--84707504 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
84707447 AAAACTATCT
* * *
84707457 AAAATAATATAAAATATTATA
1 AAAATAAGATAAAAAATTAAA
**
84707478 TTAATAAGATAAAAAATTAAA
1 AAAATAAGATAAAAAATTAAA
84707499 AAAATA
1 AAAATA
84707505 GTTGTTTAAA
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATAAGATAAAAAATTAAA
Found at i:84708738 original size:24 final size:24
Alignment explanation
Indices: 84708706--84708753 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84708696 TATTAATTTT
84708706 TTAAGATTATTTATGAAATAAAAA
1 TTAAGATTATTTATGAAATAAAAA
84708730 TTAAGATTATTTATGAAATAAAAA
1 TTAAGATTATTTATGAAATAAAAA
84708754 ATAGACTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (24 bp):
TTAAGATTATTTATGAAATAAAAA
Found at i:84711996 original size:2 final size:2
Alignment explanation
Indices: 84711989--84712013 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84711979 AAATACTAAC
84711989 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
84712014 GTGAGTATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84712734 original size:2 final size:2
Alignment explanation
Indices: 84712687--84712724 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
84712677 ATGATAAGCC
84712687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84712725 CAAAATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84713466 original size:25 final size:25
Alignment explanation
Indices: 84713386--84713527 Score: 110
Period size: 25 Copynumber: 5.7 Consensus size: 25
84713376 AGTTGTATAA
* **
84713386 CGGGAAGCTCTTGCGAGCCAAATAT
1 CGGGAAGCTCATAAGAGCCAAATAT
** *
84713411 CAAGAAGCT-A-AGAGAGCC-ATTAAT
1 CGGGAAGCTCATA-AGAGCCAAAT-AT
* *
84713435 CGGGAAGCTCATAAGAGCTAAATAA
1 CGGGAAGCTCATAAGAGCCAAATAT
* * * *
84713460 CGAGAAGCTCGTGAGAGCCAAGTAT
1 CGGGAAGCTCATAAGAGCCAAATAT
* *
84713485 CGGGAAGCTCGTGAGAGCCAAATAT
1 CGGGAAGCTCATAAGAGCCAAATAT
*
84713510 CGGGACGCTCATAAGAGC
1 CGGGAAGCTCATAAGAGC
84713528 TGTGGTGTGT
Statistics
Matches: 90, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
23 2 0.02
24 14 0.16
25 71 0.79
26 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.16
Consensus pattern (25 bp):
CGGGAAGCTCATAAGAGCCAAATAT
Found at i:84713478 original size:74 final size:75
Alignment explanation
Indices: 84713382--84713528 Score: 181
Period size: 74 Copynumber: 2.0 Consensus size: 75
84713372 TGTAAGTTGT
* * * *
84713382 ATAACGGGAAGCTCTTGCGAGCCAAATATCAAGAAGCT-AAGAGAGCC-ATTAATCGGGAAGCTC
1 ATAACGAGAAGCTCGTGAGAGCCAAATATCAAGAAGCTCAAGAGAGCCAAAT-ATCGGGAAGCTC
84713445 ATAAGAGCTAA
65 ATAAGAGCTAA
* ** ** *
84713456 ATAACGAGAAGCTCGTGAGAGCCAAGTATCGGGAAGCTCGTGAGAGCCAAATATCGGGACGCTCA
1 ATAACGAGAAGCTCGTGAGAGCCAAATATCAAGAAGCTCAAGAGAGCCAAATATCGGGAAGCTCA
84713521 TAAGAGCT
66 TAAGAGCT
84713529 GTGGTGTGTC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
74 32 0.52
75 27 0.44
76 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (75 bp):
ATAACGAGAAGCTCGTGAGAGCCAAATATCAAGAAGCTCAAGAGAGCCAAATATCGGGAAGCTCA
TAAGAGCTAA
Found at i:84713527 original size:50 final size:50
Alignment explanation
Indices: 84713386--84713527 Score: 137
Period size: 50 Copynumber: 2.9 Consensus size: 50
84713376 AGTTGTATAA
* * * *
84713386 CGGGAAGCTCTTGCGAGCCAAATATCAAGAAGCT-A-AGAGAGCCATTAAT
1 CGGGAAGCTCATGAGAGCCAAATATCGAGAAGCTCATA-AGAGCCAGTAAT
* * * * *
84713435 CGGGAAGCTCATAAGAGCTAAATAACGAGAAGCTCGTGAGAGCCAAGT-AT
1 CGGGAAGCTCATGAGAGCCAAATATCGAGAAGCTCATAAGAGCC-AGTAAT
* * *
84713485 CGGGAAGCTCGTGAGAGCCAAATATCGGGACGCTCATAAGAGC
1 CGGGAAGCTCATGAGAGCCAAATATCGAGAAGCTCATAAGAGC
84713528 TGTGGTGTGT
Statistics
Matches: 73, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
49 28 0.38
50 43 0.59
51 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.16
Consensus pattern (50 bp):
CGGGAAGCTCATGAGAGCCAAATATCGAGAAGCTCATAAGAGCCAGTAAT
Found at i:84720336 original size:43 final size:43
Alignment explanation
Indices: 84720252--84720337 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
84720242 AAGTCGTACA
*
84720252 ATGCCAATGTCCCAGACGTGGTCTAACATGTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTAACATGTAAACACATATCG
* * *
84720295 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACATATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTAACAT-GTAAACACATATCG
84720338 GAATCCTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.95
44 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTAACATGTAAACACATATCG
Found at i:84725251 original size:40 final size:40
Alignment explanation
Indices: 84725192--84725399 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
84725182 CAATTGAATG
* * * *
84725192 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
84725232 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
84725272 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
84725312 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
84725352 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
84725392 ATATCCGG
1 ATATCCGG
84725400 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:84725330 original size:80 final size:80
Alignment explanation
Indices: 84725193--84725399 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
84725183 AATTGAATGA
* * ** * * *
84725193 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
84725258 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
84725271 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
84725336 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
84725353 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
84725400 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:84733401 original size:40 final size:40
Alignment explanation
Indices: 84733342--84733549 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
84733332 CAATTGAATG
* * * *
84733342 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
84733382 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
84733422 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
84733462 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
84733502 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
84733542 ATATCCGG
1 ATATCCGG
84733550 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:84733480 original size:80 final size:80
Alignment explanation
Indices: 84733343--84733549 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
84733333 AATTGAATGA
* * ** * * *
84733343 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
* *
84733408 TTGTGCTAGTGACTAC
66 TTGTGCAAGTCA-TAC
* * * *
84733424 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
84733488 TTGTGCAAGTCATTC
66 TTGTGCAAGTCATAC
* *
84733503 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
84733550 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
79 2 0.02
80 106 0.98
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCATAC
Found at i:84740058 original size:46 final size:46
Alignment explanation
Indices: 84740005--84740094 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
84739995 ATATATATAC
* * *
84740005 ATCTCATACATA-TCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACAGT-TCACATTAGCCATTCGGCCTTACCACATATCT
*
84740051 ATCTCATACACAGTTCGCATTAGCCATTCGGCCTTACCACATAT
1 ATCTCATACACAGTTCACATTAGCCATTCGGCCTTACCACATAT
84740095 ATACATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (46 bp):
ATCTCATACACAGTTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:84740130 original size:47 final size:47
Alignment explanation
Indices: 84740068--84740211 Score: 243
Period size: 47 Copynumber: 3.1 Consensus size: 47
84740058 ACACAGTTCG
* * * *
84740068 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
84740115 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
84740162 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
84740209 CAT
1 CAT
84740212 AAAATCCTAA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:84755701 original size:14 final size:14
Alignment explanation
Indices: 84755684--84755710 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84755674 TATTAAAATA
84755684 AGAATTAAGAACAC
1 AGAATTAAGAACAC
84755698 AGAATTAAGAACA
1 AGAATTAAGAACA
84755711 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (14 bp):
AGAATTAAGAACAC
Found at i:84779459 original size:40 final size:39
Alignment explanation
Indices: 84779415--84779607 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
84779405 GTTCAAAACA
* * ** * *
84779415 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
84779455 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
84779495 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84779534 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84779573 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
84779608 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:84779526 original size:39 final size:39
Alignment explanation
Indices: 84779445--84779607 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
84779435 TATGGTAACC
* *
84779445 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
84779485 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84779524 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84779563 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
84779602 CGCACA
1 CGCACA
84779608 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:84787422 original size:40 final size:39
Alignment explanation
Indices: 84787378--84787570 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
84787368 GTTCAAAACA
* * ** * *
84787378 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
84787418 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
84787458 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84787497 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
84787536 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
84787571 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Done.