Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 284 of 345
Found at i:84787489 original size:39 final size:39
Alignment explanation
Indices: 84787408--84787570 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
84787398 TATGGTAACC
* *
84787408 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
84787448 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84787487 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84787526 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
84787565 CGCACA
1 CGCACA
84787571 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:84793926 original size:25 final size:25
Alignment explanation
Indices: 84793898--84794001 Score: 109
Period size: 25 Copynumber: 4.2 Consensus size: 25
84793888 AAGCTCTTAC
*
84793898 GAGCCAAATATTGGGAAGCTCATGA
1 GAGCCAAATATCGGGAAGCTCATGA
* * *
84793923 GAGCTAAATAACGGGAAGCTCGTGA
1 GAGCCAAATATCGGGAAGCTCATGA
* * * *
84793948 GAACCAAGTATCAGGAAGCTCGTGA
1 GAGCCAAATATCGGGAAGCTCATGA
* * *
84793973 GAGCCTAATATCGGGATGCTCATAA
1 GAGCCAAATATCGGGAAGCTCATGA
84793998 GAGC
1 GAGC
84794002 TGTGTTGTGT
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (25 bp):
GAGCCAAATATCGGGAAGCTCATGA
Found at i:84793934 original size:50 final size:50
Alignment explanation
Indices: 84793832--84793976 Score: 130
Period size: 50 Copynumber: 2.9 Consensus size: 50
84793822 CAAACATGTA
* * * * * **
84793832 AACGTGAAGCTCTTCCGAGCCATATAACAGGAAGCTCATGTGAGTTGTAT
1 AACGAGAAGCTCTTACGAGCCAAATAACAGGAAGCTCATGAGAGCTAAAT
***
84793882 AACGAGAAGCTCTTACGAGCCAAATATTGGGAAGCTCATGAGAGCTAAAT
1 AACGAGAAGCTCTTACGAGCCAAATAACAGGAAGCTCATGAGAGCTAAAT
* * * * * *
84793932 AACGGGAAGCTCGTGA-GAACCAAGTATCAGGAAGCTCGTGAGAGC
1 AACGAGAAGCTC-TTACGAGCCAAATAACAGGAAGCTCATGAGAGC
84793977 CTAATATCGG
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
50 75 0.97
51 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (50 bp):
AACGAGAAGCTCTTACGAGCCAAATAACAGGAAGCTCATGAGAGCTAAAT
Found at i:84796885 original size:25 final size:25
Alignment explanation
Indices: 84796831--84796885 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
84796821 AATTTTAAAA
*
84796831 ATAAATTATATAAATTTAAAATTTC
1 ATAAATTATATAAATTTAAAATATC
*
84796856 A-AAATTATATTTAATTTAAAATAT-
1 ATAAATTATA-TAAATTTAAAATATC
84796880 ATAAAT
1 ATAAAT
84796886 AAATATAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
ATAAATTATATAAATTTAAAATATC
Found at i:84799542 original size:21 final size:21
Alignment explanation
Indices: 84799516--84799576 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
84799506 CATGTATTTT
*
84799516 AATGTTTGATGATAGATTATG
1 AATGTTTAATGATAGATTATG
84799537 AATGTTTAATGATAGATTATG
1 AATGTTTAATGATAGATTATG
84799558 AATGTTTAATGATAG-TTAT
1 AATGTTTAATGATAGATTAT
84799577 ACAAGTTATG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
20 4 0.10
21 35 0.90
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (21 bp):
AATGTTTAATGATAGATTATG
Found at i:84804644 original size:13 final size:12
Alignment explanation
Indices: 84804625--84804662 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
84804615 TTTTGAAAAT
84804625 AATAATTAATTA
1 AATAATTAATTA
84804637 ACATAATTAATTA
1 A-ATAATTAATTA
84804650 TAAT-ATTAATTA
1 -AATAATTAATTA
84804662 A
1 A
84804663 GTGATAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.04
12 9 0.38
13 13 0.54
14 1 0.04
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAATTAATTA
Found at i:84804762 original size:25 final size:25
Alignment explanation
Indices: 84804716--84804765 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
84804706 ATTTTACATC
* *
84804716 AATAAAATTAGTATAACTTTTTTAA
1 AATAAAATTAGCACAACTTTTTTAA
84804741 AATAAAATTAGCACAA-TATTTTTAA
1 AATAAAATTAGCACAACT-TTTTTAA
84804766 CTAATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (25 bp):
AATAAAATTAGCACAACTTTTTTAA
Found at i:84806929 original size:71 final size:71
Alignment explanation
Indices: 84806841--84807004 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
84806831 GAGATGTATC
84806841 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84806906 AGGACA
66 AGGACA
*
84806912 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
84806977 CGGACA
66 AGGACA
84806983 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84807005 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84814005 original size:71 final size:71
Alignment explanation
Indices: 84813917--84814080 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
84813907 GAGATGTATC
84813917 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84813982 AGGACA
66 AGGACA
*
84813988 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
84814053 CGGACA
66 AGGACA
84814059 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84814081 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84822138 original size:30 final size:30
Alignment explanation
Indices: 84822083--84822242 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
84822073 ATAGTGAATC
84822083 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84822112 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84822142 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
84822171 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
84822199 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84822229 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84822243 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:84822175 original size:59 final size:57
Alignment explanation
Indices: 84822083--84822242 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
84822073 ATAGTGAATC
*
84822083 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
84822142 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
84822199 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
84822243 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:84830180 original size:30 final size:30
Alignment explanation
Indices: 84830125--84830284 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
84830115 ATAGTGAATC
84830125 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84830154 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84830184 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
84830213 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
84830241 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
84830271 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84830285 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:84830217 original size:59 final size:57
Alignment explanation
Indices: 84830125--84830284 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
84830115 ATAGTGAATC
*
84830125 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
84830184 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
84830241 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
84830285 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:84836563 original size:17 final size:17
Alignment explanation
Indices: 84836543--84836583 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
84836533 CACATAAGAA
84836543 TCCTTGAAAAATAACAT
1 TCCTTGAAAAATAACAT
84836560 TCCTTGAAAAATAACAT
1 TCCTTGAAAAATAACAT
*
84836577 TTCTTGA
1 TCCTTGA
84836584 TTCCATCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (17 bp):
TCCTTGAAAAATAACAT
Found at i:84851392 original size:36 final size:36
Alignment explanation
Indices: 84851345--84851415 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
84851335 ACACCGTTGG
* *
84851345 AATTTTAATAACAACTTTTCCTTTCTTTTTAAGATT
1 AATTTTAATAACAACTCTTCCTTTCTTTTCAAGATT
*
84851381 AATTTTAATAACAACTCTTCTTTTCTTTTCAAGAT
1 AATTTTAATAACAACTCTTCCTTTCTTTTCAAGAT
84851416 GGCCAATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (36 bp):
AATTTTAATAACAACTCTTCCTTTCTTTTCAAGATT
Found at i:84859556 original size:27 final size:27
Alignment explanation
Indices: 84859516--84859650 Score: 110
Period size: 27 Copynumber: 5.0 Consensus size: 27
84859506 GGAAGAAACA
** *
84859516 CCTTTGTGGTAATATCTGTAAAGGAAG
1 CCTTTGTGACAATCTCTGTAAAGGAAG
* * *
84859543 CCTTTGTGACAATATCT-AAAAGGGGAG
1 CCTTTGTGACAATCTCTGTAAA-GGAAG
* * *
84859570 TCTTTGTGACAATCTCTATAAAGGATG
1 CCTTTGTGACAATCTCTGTAAAGGAAG
* * *
84859597 CCTTTGTGGCGATCTCTGTTAAATGAAG
1 CCTTTGTGACAATCTCTG-TAAAGGAAG
* * *
84859625 CCTTTATGACTATCTCTGAAAAGGAA
1 CCTTTGTGACAATCTCTGTAAAGGAA
84859651 CATTTTCGTG
Statistics
Matches: 85, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.04
27 57 0.67
28 25 0.29
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (27 bp):
CCTTTGTGACAATCTCTGTAAAGGAAG
Found at i:84860997 original size:46 final size:46
Alignment explanation
Indices: 84860937--84861156 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
84860927 TTTGACATGA
* * * * * *
84860937 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
84860983 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
84861029 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
84861075 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
84861113 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
84861157 AGAGCACACT
Statistics
Matches: 154, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.22
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 108 0.70
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:84861120 original size:38 final size:38
Alignment explanation
Indices: 84861069--84861144 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
84861059 ACATTTCATA
84861069 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
84861107 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
84861145 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:84863305 original size:11 final size:11
Alignment explanation
Indices: 84863289--84863340 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
84863279 TATACTAAAT
84863289 AAATAATAATA
1 AAATAATAATA
*
84863300 AAATAAT-ATT
1 AAATAATAATA
* *
84863310 AAATATCTCATA
1 AAATA-ATAATA
*
84863322 AAATATTAATA
1 AAATAATAATA
84863333 AAATAATA
1 AAATAATA
84863341 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:84866662 original size:84 final size:84
Alignment explanation
Indices: 84866521--84866686 Score: 296
Period size: 84 Copynumber: 2.0 Consensus size: 84
84866511 TTATTTGAGT
* *
84866521 TAGGTTGAATCGGTCGGTTAGACTAAGGGCAAGTCGAGATATTAGTTCAGAAGAGGATATTGAAT
1 TAGGTTGAATCGGTCGGTTAGACTAAGGGCAAGTCAAAATATTAGTTCAGAAGAGGATATTGAAT
*
84866586 TGATTGACCCAAAAATCAG
66 CGATTGACCCAAAAATCAG
*
84866605 TAGGTTGAATCGGTCGGTTGGACTAAGGGCAAGTCAAAATATTAGTTCAGAAGAGGATATTGAAT
1 TAGGTTGAATCGGTCGGTTAGACTAAGGGCAAGTCAAAATATTAGTTCAGAAGAGGATATTGAAT
84866670 CGATTGACCCAAAAATC
66 CGATTGACCCAAAAATC
84866687 GGTACATGTT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.26
Consensus pattern (84 bp):
TAGGTTGAATCGGTCGGTTAGACTAAGGGCAAGTCAAAATATTAGTTCAGAAGAGGATATTGAAT
CGATTGACCCAAAAATCAG
Found at i:84870910 original size:45 final size:45
Alignment explanation
Indices: 84870846--84870936 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
84870836 GACTGCTTTT
84870846 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
1 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
84870891 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
1 ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
84870936 A
1 A
84870937 GAGTTCAGGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (45 bp):
ACAGCGTTGAGAACTATATTTCGCAATCGATGCTTTTATCAGGAA
Found at i:84881105 original size:27 final size:26
Alignment explanation
Indices: 84881045--84881106 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
84881035 ATTTTATTTT
84881045 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
84881071 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
84881099 ATTTTATT
1 ATTTTATT
84881107 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:84887836 original size:24 final size:23
Alignment explanation
Indices: 84887784--84887838 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
84887774 TAATCGAATT
*
84887784 TGCACACATAGTGCTCGTCACAC
1 TGCACACATAGTGCTAGTCACAC
84887807 TCGCACACATAGTGCCATAG-CACAC
1 T-GCACACATAGTG-C-TAGTCACAC
84887832 TGCACAC
1 TGCACAC
84887839 TCAGTGCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 7 0.25
26 2 0.07
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.18
Consensus pattern (23 bp):
TGCACACATAGTGCTAGTCACAC
Found at i:84890594 original size:3 final size:3
Alignment explanation
Indices: 84890586--84890637 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
84890576 AATAGATGCT
84890586 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
84890634 ATA A
1 ATA A
84890638 AGTTATAACT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84895636 original size:40 final size:39
Alignment explanation
Indices: 84895591--84895717 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
84895581 CGGAACATAA
84895591 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
84895631 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84895671 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
84895711 CCGGATA
1 CCGGATA
84895718 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84895735 original size:40 final size:40
Alignment explanation
Indices: 84895607--84895757 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
84895597 ATAACCATGT
* * *
84895607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
84895647 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
84895687 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
84895727 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
84895758 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:84895741 original size:80 final size:80
Alignment explanation
Indices: 84895607--84895756 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
84895597 ATAACCATGT
* *
84895607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84895671 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
84895687 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84895750 CCCGGAT
64 CCCGGAT
84895757 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84903657 original size:40 final size:39
Alignment explanation
Indices: 84903612--84903738 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
84903602 CGGAACATAA
84903612 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
84903652 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
84903692 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
84903732 CCGGATA
1 CCGGATA
84903739 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:84903756 original size:40 final size:40
Alignment explanation
Indices: 84903628--84903778 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
84903618 ATAACCATGT
* * *
84903628 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
84903668 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
84903708 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
84903748 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
84903779 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:84903762 original size:80 final size:80
Alignment explanation
Indices: 84903628--84903777 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
84903618 ATAACCATGT
* *
84903628 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84903692 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
84903708 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84903771 CCCGGAT
64 CCCGGAT
84903778 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84913933 original size:37 final size:37
Alignment explanation
Indices: 84913883--84914010 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
84913873 TTATTATGAA
84913883 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
84913920 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84913957 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
84913994 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
84914011 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
37 83 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:84914206 original size:49 final size:49
Alignment explanation
Indices: 84914097--84914383 Score: 515
Period size: 49 Copynumber: 5.9 Consensus size: 49
84914087 CACACATATA
84914097 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
* *
84914144 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
84914193 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
84914242 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
**
84914291 TTTCTTATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
*
84914340 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
84914384 TATCTCATAC
Statistics
Matches: 230, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 42 0.18
49 188 0.82
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAC
Found at i:84918777 original size:50 final size:49
Alignment explanation
Indices: 84918681--84918877 Score: 207
Period size: 50 Copynumber: 4.0 Consensus size: 49
84918671 GGTCGATAGA
* * * * * *
84918681 AAATCGAATATAATATCACATATGTGCATACCTATATGGTCAAATATGC
1 AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATTC
* * * *
84918730 AAGATCAAATTTAACATCAAATATGTACTTACTTATATGGCCGAATATTC
1 AA-ATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATTC
* * * *
84918780 AAATTCAAATATAATATCACATTTATGCATACCT-TCATGGCCGAATATTC
1 AAA-TCAAATATAACATCACATATGTACATACCTAT-ATGGCCGAATATTC
* *
84918830 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAATAT
1 -AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATAT
84918878 ATACAAGGTC
Statistics
Matches: 119, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
49 4 0.03
50 111 0.93
51 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (49 bp):
AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATTC
Found at i:84918809 original size:100 final size:100
Alignment explanation
Indices: 84918687--84918877 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 100
84918677 TAGAAAATCG
* * * *
84918687 AATATAATATCACATATGTGCATACCTAT-ATGGTCAAATATGCAAGATCAAATTTAACATCAAA
1 AATATAATATCACATATATGCATACCT-TCATGGCCAAATATGCAAAATCAAATATAACATCAAA
* *
84918751 TATGTACTTACTTATATGGCCGAATATTCAAATTCA
65 TATGTACATACCTATATGGCCGAATATTCAAATTCA
* * * * *
84918787 AATATAATATCACATTTATGCATACCTTCATGGCCGAATATTCAAAATCCAATATAACATCACAT
1 AATATAATATCACATATATGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAAT
*
84918852 ATGTACATACCTATGTGGCCGAATAT
66 ATGTACATACCTATATGGCCGAATAT
84918878 ATACAAGGTC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 77 0.99
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (100 bp):
AATATAATATCACATATATGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAAT
ATGTACATACCTATATGGCCGAATATTCAAATTCA
Found at i:84945662 original size:39 final size:39
Alignment explanation
Indices: 84945581--84945681 Score: 125
Period size: 39 Copynumber: 2.6 Consensus size: 39
84945571 CAAACCCAAG
* *
84945581 TGCCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAA
* *
84945620 TGCCTTCGGGACTTGGTCCGGATATAGTC-ACTAGCAC-CA
1 TGCCTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAA
84945659 TGCCTTCGGGACTTAGCCCGGAT
1 TGCCTTCGGGACTTAG-CCGGAT
84945682 GTCATCCGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
39 36 0.67
40 17 0.31
41 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCGGATATAGCAACTAGCACAAA
Found at i:84954025 original size:40 final size:40
Alignment explanation
Indices: 84953951--84954129 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
84953941 AACCCAAGTA
* *
84953951 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
84953990 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
84954030 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
84954070 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
84954109 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
84954130 GTCATCCGAA
Statistics
Matches: 133, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
39 36 0.27
40 96 0.72
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:84957251 original size:19 final size:19
Alignment explanation
Indices: 84957216--84957253 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
84957206 TTGCAACTTA
*
84957216 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
84957235 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
84957254 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:84966444 original size:50 final size:50
Alignment explanation
Indices: 84966336--84966534 Score: 202
Period size: 50 Copynumber: 4.0 Consensus size: 50
84966326 TCAATTAGAG
* * * * *
84966336 AAAATCGAATATAATATCACATATGTGCATACATATATGGCCGAATATGC
1 AAAATCAAATATAACATCACATATGTACATACTTATATGGCCGAATATAC
* * * * *
84966386 AAGATCAAATTTAACATCAAATATATACTTACTTATATGGCCGAATATAC
1 AAAATCAAATATAACATCACATATGTACATACTTATATGGCCGAATATAC
* * * * * *
84966436 AAAATCAAATATAATATCACATTTGTGCATACCTT-CATGGCCAAATATTC
1 AAAATCAAATATAACATCACATATGTACATA-CTTATATGGCCGAATATAC
* * * *
84966486 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCTGAATATA
1 AAAATCAAATATAACATCACATATGTACATACTTATATGGCCGAATATA
84966535 TACAAGGTCA
Statistics
Matches: 116, Mismatches: 31, Indels: 4
0.77 0.21 0.03
Matches are distributed among these distances:
49 2 0.02
50 111 0.96
51 3 0.03
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (50 bp):
AAAATCAAATATAACATCACATATGTACATACTTATATGGCCGAATATAC
Found at i:84966532 original size:100 final size:100
Alignment explanation
Indices: 84966336--84966534 Score: 256
Period size: 100 Copynumber: 2.0 Consensus size: 100
84966326 TCAATTAGAG
* * * *
84966336 AAAATCGAATATAATATCACATATGTGCATACATATATGGCCGAATATGCAAGATCAAATTTAAC
1 AAAATCAAATATAATATCACATATGTGCATACATATATGGCCAAATATGCAAAATCAAATATAAC
* *
84966401 ATCAAATATATACTTACTTATATGGCCGAATATAC
66 ATCAAATATATACATACCTATATGGCCGAATATAC
* * * *
84966436 AAAATCAAATATAATATCACATTTGTGCATACCT-TCATGGCCAAATATTCAAAATCCAATATAA
1 AAAATCAAATATAATATCACATATGTGCATACATAT-ATGGCCAAATATGCAAAATCAAATATAA
* * * *
84966500 CATCACATATGTACATACCTATGTGGCTGAATATA
65 CATCAAATATATACATACCTATATGGCCGAATATA
84966535 TACAAGGTCA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 1 0.01
100 83 0.99
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (100 bp):
AAAATCAAATATAATATCACATATGTGCATACATATATGGCCAAATATGCAAAATCAAATATAAC
ATCAAATATATACATACCTATATGGCCGAATATAC
Found at i:84970884 original size:80 final size:80
Alignment explanation
Indices: 84970790--84970971 Score: 211
Period size: 80 Copynumber: 2.3 Consensus size: 80
84970780 GCTCGATTGT
* * *** * * * **
84970790 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
84970855 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
84970870 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
84970935 TACTAGCATAATTGC
66 AACTAGCACAAATGC
*
84970950 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
84970972 CATTCCAATG
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:84970933 original size:40 final size:40
Alignment explanation
Indices: 84970764--84970971 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
84970754 CGGGATTTAA
** * * * * *
84970764 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
84970804 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
84970844 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
**
84970884 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
84970924 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACGAA-TGCCTTCGGGTCTTAGC
*
84970964 CCAGATAT
1 CCGGATAT
84970972 CATTCCAATG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 136 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84973480 original size:19 final size:19
Alignment explanation
Indices: 84973456--84973493 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
84973446 GAAGATACTA
*
84973456 ACTACAACTCGAAAAAACT
1 ACTACAACTCAAAAAAACT
84973475 ACTACAACTCAAAAAAACT
1 ACTACAACTCAAAAAAACT
84973494 GAGTATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.26, G:0.03, T:0.16
Consensus pattern (19 bp):
ACTACAACTCAAAAAAACT
Found at i:84977510 original size:14 final size:12
Alignment explanation
Indices: 84977472--84977529 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 12
84977462 GTACATGTTC
84977472 ATAAAATAAATAT
1 ATAAAAT-AATAT
84977485 ATAAAATAATAT
1 ATAAAATAATAT
*
84977497 ATAACACATGATAT
1 ATAA-A-ATAATAT
**
84977511 ATGCAATATATAT
1 ATAAAATA-ATAT
84977524 ATAAAA
1 ATAAAA
84977530 AAATGAAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
12 11 0.31
13 17 0.47
14 8 0.22
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.31
Consensus pattern (12 bp):
ATAAAATAATAT
Found at i:84978066 original size:3 final size:3
Alignment explanation
Indices: 84978058--84978158 Score: 63
Period size: 3 Copynumber: 34.7 Consensus size: 3
84978048 CAAGTAAGAT
* * *
84978058 ATA ATA ATA AT- ATA AAA ATA ATA AT- GTA A-A ATA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
84978103 ATA ATTT GTGA A-A A-A ATA AGA TATA ATA ATA ATA ATA AT- ATA TATA
1 ATA A-TA AT-A ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA
84978149 ATA A-A ATA AT
1 ATA ATA ATA AT
84978159 CTTATAATGT
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
2 13 0.17
3 57 0.75
4 6 0.08
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84978072 original size:11 final size:11
Alignment explanation
Indices: 84978016--84978105 Score: 51
Period size: 11 Copynumber: 7.6 Consensus size: 11
84978006 ATGTAAGAAC
84978016 AATATATATAAAT
1 AATA-ATAT-AAT
84978029 AATTAATA-AAT
1 AA-TAATATAAT
*
84978040 ATATAATACAAGT
1 A-ATAATATAA-T
*
84978053 AA-GATATAAT
1 AATAATATAAT
84978063 AATAATATAAAAAT
1 AATAATAT---AAT
*
84978077 AATAATGTAA-
1 AATAATATAAT
84978087 AATAATACTAAT
1 AATAATA-TAAT
84978099 AATAATA
1 AATAATA
84978106 ATTTGTGAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
10 9 0.15
11 23 0.37
12 11 0.18
13 7 0.11
14 12 0.19
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (11 bp):
AATAATATAAT
Found at i:84978116 original size:28 final size:25
Alignment explanation
Indices: 84978063--84978158 Score: 76
Period size: 25 Copynumber: 3.8 Consensus size: 25
84978053 AAGATATAAT
*
84978063 AATAATATAAAAATAATAA-TGTAA
1 AATAATATAATAATAATAATTGTAA
84978087 AATAATACTAATAATAATAATTTGTGAA
1 AATAATA-TAATAATAATAA-TTGT-AA
**
84978115 AA-AATA-AGAT-ATAATAATAATAA
1 AATAATATA-ATAATAATAATTGTAA
84978138 TAATATATATAATAA-AATAAT
1 -AATA-ATATAATAATAATAAT
84978159 CTTATAATGT
Statistics
Matches: 59, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
23 2 0.03
24 11 0.19
25 20 0.34
26 13 0.22
27 9 0.15
28 4 0.07
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (25 bp):
AATAATATAATAATAATAATTGTAA
Found at i:84978164 original size:18 final size:18
Alignment explanation
Indices: 84978016--84978158 Score: 78
Period size: 19 Copynumber: 8.2 Consensus size: 18
84978006 ATGTAAGAAC
84978016 AATATATATAAATAATTAAT
1 AATATATAT-AATAA-TAAT
*
84978036 AA-ATATATAATACA-AGT
1 AATATATATAATA-ATAAT
*
84978053 AAGATATAATAATAAT-AT
1 AATATAT-ATAATAATAAT
84978071 AA-A-A-ATAATAATGTAA-
1 AATATATATAATAA--TAAT
84978087 AATA-ATACTAATAATAAT
1 AATATATA-TAATAATAAT
*
84978105 AAT-T-TGTGAA-AA-AAT
1 AATATATAT-AATAATAAT
*
84978120 AAGATATAATAATAATAAT
1 AATATAT-ATAATAATAAT
84978139 AATATATATAATAA-AAT
1 AATATATATAATAATAAT
84978156 AAT
1 AAT
84978159 CTTATAATGT
Statistics
Matches: 99, Mismatches: 6, Indels: 39
0.69 0.04 0.27
Matches are distributed among these distances:
14 7 0.07
15 5 0.05
16 8 0.08
17 23 0.23
18 26 0.26
19 28 0.28
20 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (18 bp):
AATATATATAATAATAAT
Found at i:84980200 original size:210 final size:210
Alignment explanation
Indices: 84979773--84980327 Score: 743
Period size: 210 Copynumber: 2.7 Consensus size: 210
84979763 CTGCTTCTTT
* * * * *
84979773 GATTTGTTCTCTGATAATACAGAGATGCCAAATTATCTTAGATTTTCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * * * * **
84979838 AAGCCAAATCAGTTATGTCTTCGATTTGTTCCTTG--TAAGCACA-AG-GAT--G-TCAAATCAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAA-TACAGAGAGATAAGATC-TGTCAT
* * * *
84979896 CTTGGATCTTGCCTCAGTCTAATCGTCTGAAGGTCAGATCTGCTGTGTATCTGCTCTCCATTGAA
129 CTTGGATC-TGCCTCAGTCAAATCATCTGAAGGTCAGATCTGCTATGTATCTACTCTCCATTGAA
84979961 GTAGAGATGCCAGACTTC
193 GTAGAGATGCCAGACTTC
*
84979979 GATTCGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * *
84980044 AAGCCAAATCAGCTATGTTTTCGATCTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCCTCT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
* * * *
84980109 TGGATCTGCTTCAACGT-AAAT-ATCTGAAGGTGAGATCTGCTATGTATCTATTCTCTATTGAAG
131 TGGATCTGCCTC-A-GTCAAATCATCTGAAGGTCAGATCTGCTATGTATCTACTCTCCATTGAAG
*
84980172 TGGAGATGCCAGACTTC
194 TAGAGATGCCAGACTTC
84980189 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCA-CGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
* * *
84980253 AAGCCAAATCAGCTATATCTTCGATTTGCTCCCCGCCGAATATAGAGAGATAAGATCTGTCATCT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
84980318 TGGATCTGCC
131 TGGATCTGCC
84980328 CTGATGAAGG
Statistics
Matches: 307, Mismatches: 33, Indels: 15
0.86 0.09 0.04
Matches are distributed among these distances:
206 89 0.29
207 3 0.01
208 4 0.01
209 84 0.27
210 107 0.35
211 16 0.05
212 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (210 bp):
GATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTCATCT
TGGATCTGCCTCAGTCAAATCATCTGAAGGTCAGATCTGCTATGTATCTACTCTCCATTGAAGTA
GAGATGCCAGACTTC
Found at i:84988410 original size:40 final size:40
Alignment explanation
Indices: 84988302--84988511 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84988292 CGGGATTTAA
* * * * *
84988302 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84988342 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84988382 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84988422 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84988462 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84988502 CCGGATATAT
1 CCGGATATAT
84988512 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84995138 original size:40 final size:40
Alignment explanation
Indices: 84995030--84995239 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84995020 CGGGATTTAA
* * * * *
84995030 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84995070 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84995110 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84995150 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84995190 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84995230 CCGGATATAT
1 CCGGATATAT
84995240 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84997980 original size:80 final size:80
Alignment explanation
Indices: 84997896--84998044 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84997886 TATGGTAACC
* * * *
84997896 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84997960 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84997976 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84998041 CCGG
66 CCGG
84998045 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84997986 original size:40 final size:38
Alignment explanation
Indices: 84997937--84998044 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84997927 ATCACGATTT
*
84997937 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84997977 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84998017 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84998045 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85005334 original size:40 final size:40
Alignment explanation
Indices: 85005285--85005452 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
85005275 TCTTCGGAAT
* * *
85005285 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
85005324 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
85005364 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
85005404 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
85005444 TTAGCCCGG
1 TTAGCCCGG
85005453 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:85013678 original size:40 final size:40
Alignment explanation
Indices: 85013585--85013693 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
85013575 TATAACCACA
** * * **
85013585 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAATAACT
* * *
85013625 TGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATTACT
1 AGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAATAACT
* *
85013665 AGCATAAAAGCCTTCGGGACTTAGCCCGG
1 AGCACAAAAGCCTTCGGGTCTTAGCCCGG
85013694 GTATCATTCA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
AGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAATAACT
Found at i:85022122 original size:64 final size:64
Alignment explanation
Indices: 85022017--85022223 Score: 195
Period size: 67 Copynumber: 3.1 Consensus size: 64
85022007 CATCATGTGT
* **
85022017 ACAAGAAAGCTACGAGACATTATAATGTAGCTAGGTCGCATGGGTAATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TA-AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
85022082 TAG
62 TAG
* * * * * * *
85022085 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
85022150 AG
63 AG
* * *
85022152 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
85022214 TACAAGAGAG
1 -ACAAGAGAG
85022224 TCGAACTATA
Statistics
Matches: 114, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 24 0.21
65 2 0.02
66 22 0.19
67 31 0.27
68 16 0.14
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:85022559 original size:28 final size:27
Alignment explanation
Indices: 85022521--85022670 Score: 126
Period size: 28 Copynumber: 5.4 Consensus size: 27
85022511 AAACGAACGG
* *
85022521 CACTTAGTGTGCGAAGTATTGAGGATGG
1 CACTTAGTGTGCGAAGTATCGA-GATGA
* *
85022549 CACTTAGTGTGC-AAGGCATCCGAAATGA
1 CACTTAGTGTGCGAA-GTAT-CGAGATGA
** *
85022577 CAC--AGTGTATGAAGTATTGATGATGA
1 CACTTAGTGTGCGAAGTATCGA-GATGA
** *
85022603 CACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGTGTGCGAAGTAT-CGAGATGA
*
85022631 CACTTAGTGTGCGAAGTATCGAGGATGG
1 CACTTAGTGTGCGAAGTATCGA-GATGA
85022659 CACTTAGTGTGC
1 CACTTAGTGTGC
85022671 TAAACATCCG
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
25 2 0.02
26 15 0.16
27 7 0.07
28 67 0.71
29 4 0.04
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (27 bp):
CACTTAGTGTGCGAAGTATCGAGATGA
Found at i:85022689 original size:28 final size:27
Alignment explanation
Indices: 85022603--85022706 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 27
85022593 TTGATGATGA
*
85022603 CACTTAGTGTGCGAAACATCCGAAATG
1 CACTTAGTGTGCGAAACATCCGGAATG
** *
85022630 ACACTTAGTGTGCGAAGTAT-CGAGGATGG
1 -CACTTAGTGTGCGAAACATCCG-GAAT-G
* *
85022659 CACTTAGTGTGCTAAACATCCGGTATAG
1 CACTTAGTGTGCGAAACATCCGGAAT-G
*
85022687 CACTTAGCGTGC-AAGACATC
1 CACTTAGTGTGCGAA-ACATC
85022707 GATTGTGCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
27 4 0.06
28 55 0.89
29 3 0.05
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (27 bp):
CACTTAGTGTGCGAAACATCCGGAATG
Found at i:85022693 original size:56 final size:55
Alignment explanation
Indices: 85022521--85022680 Score: 225
Period size: 54 Copynumber: 2.9 Consensus size: 55
85022511 AAACGAACGG
*
85022521 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCAAGGCATCCGAAATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCAA-ACATCCGAAATGA
** * *
85022577 CAC--AGTGTATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAACATCCGAAATGA
*
85022631 CACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCTAAACATCCG
1 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAACATCCG
85022681 GTATAGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 46 0.51
55 2 0.02
56 42 0.47
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (55 bp):
CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGCAAACATCCGAAATGA
Found at i:85022708 original size:56 final size:56
Alignment explanation
Indices: 85022521--85022708 Score: 161
Period size: 56 Copynumber: 3.4 Consensus size: 56
85022511 AAACGAACGG
* * * * *
85022521 CACTTAGTGTGCGAAGTATTGAGGATGGCACTTAGTGTGC-AAGGCATCCGAAATGA
1 CACTTAGCGTGCGAAGCATCGAGGATGACACTTAGTGTGCGAA-ACATCCGAAATGA
* ** * * *
85022577 CAC--AGTGTATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGCGTGCGAAGCATCGAGGATGACACTTAGTGTGCGAAACATCCGAAATGA
* * * * **
85022631 CACTTAGTGTGCGAAGTATCGAGGATGGCACTTAGTGTGCTAAACATCCGGTAT-A
1 CACTTAGCGTGCGAAGCATCGAGGATGACACTTAGTGTGCGAAACATCCGAAATGA
85022686 GCACTTAGCGTGC-AAGACATCGA
1 -CACTTAGCGTGCGAAG-CATCGA
85022709 TTGTGCAGCG
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
54 46 0.41
55 6 0.05
56 60 0.54
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (56 bp):
CACTTAGCGTGCGAAGCATCGAGGATGACACTTAGTGTGCGAAACATCCGAAATGA
Found at i:85026691 original size:96 final size:96
Alignment explanation
Indices: 85026555--85026731 Score: 291
Period size: 96 Copynumber: 1.8 Consensus size: 96
85026545 CGGCCGTGTC
* **
85026555 TCTACCCGTGTGTTTATTACCATGCATACTGACTTGAAATTTTTATGTGCAGAGGACACACGGTC
1 TCTACCCGTGTGTTTACTACCATGCATACTGACTTGAAATTTTTACATGCAGAGGACACACGGTC
* *
85026620 GGACAACATGCCCATGACACATGCCCTTGTG
66 AGACAACACGCCCATGACACATGCCCTTGTG
* *
85026651 TCTACCCGTGTGTTTACTACCATGCATACTGACTTGAAATTTTTACATGTAGGGGACACACGGTC
1 TCTACCCGTGTGTTTACTACCATGCATACTGACTTGAAATTTTTACATGCAGAGGACACACGGTC
85026716 AGACAACACGCCCATG
66 AGACAACACGCCCATG
85026732 GGGCTAGCCG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (96 bp):
TCTACCCGTGTGTTTACTACCATGCATACTGACTTGAAATTTTTACATGCAGAGGACACACGGTC
AGACAACACGCCCATGACACATGCCCTTGTG
Found at i:85035614 original size:93 final size:93
Alignment explanation
Indices: 85035455--85035625 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
85035445 GCCCATAAGT
* *
85035455 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
85035520 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
85035548 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85035613 CGAGTTCGGATGC
66 CGAGCTCGGATGC
85035626 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:85035622 original size:46 final size:46
Alignment explanation
Indices: 85035447--85035622 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
85035437 TGTAACCCGC
* * *
85035447 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
85035493 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
85035543 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
85035586 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
85035623 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:85038052 original size:30 final size:30
Alignment explanation
Indices: 85038008--85038096 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
85037998 CAAAGATAAC
85038008 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
85038037 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
85038067 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
85038097 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:85038056 original size:15 final size:15
Alignment explanation
Indices: 85038008--85038087 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
85037998 CAAAGATAAC
*
85038008 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
85038022 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
85038037 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
85038052 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
85038067 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
85038082 AAGAAA
1 AAGAAA
85038088 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:85038096 original size:15 final size:15
Alignment explanation
Indices: 85038019--85038096 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
85038009 AGAAAACCGA
85038019 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
85038034 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
85038048 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
85038063 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
85038079 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
85038094 ATA
1 ATA
85038097 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85041061 original size:46 final size:45
Alignment explanation
Indices: 85040994--85041168 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
85040984 ATGTAACCGC
*
85040994 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
85041040 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
85041086 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
85041133 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
85041169 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:85041114 original size:93 final size:93
Alignment explanation
Indices: 85041002--85041172 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
85040992 GCCCATAAGT
*
85041002 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85041066 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
85041095 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
85041160 CGAGTTCGGATGC
66 CGAGCTCGGATGC
85041173 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:85041188 original size:46 final size:46
Alignment explanation
Indices: 85040999--85041188 Score: 130
Period size: 46 Copynumber: 4.1 Consensus size: 46
85040989 ACCGCCCATA
* * *
85040999 AGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCTCAACCATCC-T
85041044 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * *
85041094 --CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCT-CAACCATCCT
*
85041138 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
85041184 AGTGA
1 AGTGA
85041189 CATGTCACTT
Statistics
Matches: 115, Mismatches: 11, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
44 8 0.07
45 4 0.03
46 63 0.55
47 30 0.26
49 3 0.03
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:85052117 original size:80 final size:81
Alignment explanation
Indices: 85052033--85052198 Score: 217
Period size: 80 Copynumber: 2.1 Consensus size: 81
85052023 CAGGACATAG
** * *
85052033 CCCGGTTATAGTAGTTCGCACAATTGCCTTCGGGAATTAACCCGGATCTAGTAAC-TCGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATCTAGTAACTTAGCACAAA
*
85052097 TGCCTTCGGGACTTAA
66 AGCCTTCGGGACTTAA
* * * * * *
85052113 CCCGGTTTTGGTAACTCGCACAAATGCCTTTGGGAATTGACCCGGATTTAGTCACTTAGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATCTAGTAACTTAGCACAAA
*
85052178 AGCCTTCGGGACTTAG
66 AGCCTTCGGGACTTAA
85052194 CCCGG
1 CCCGG
85052199 ACATCATTCG
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 46 0.63
81 27 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATCTAGTAACTTAGCACAAA
AGCCTTCGGGACTTAA
Found at i:85052183 original size:41 final size:40
Alignment explanation
Indices: 85052048--85052199 Score: 187
Period size: 40 Copynumber: 3.8 Consensus size: 40
85052038 TTATAGTAGT
* *
85052048 TCGCACAATTGCCTTCGGGAATTAACCCGGATCTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
85052088 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * *
85052128 TCGCACAAATGCCTTTGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
* * * *
85052168 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTAACCCGGA
85052200 CATCATTCGA
Statistics
Matches: 94, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC
Found at i:85062467 original size:82 final size:82
Alignment explanation
Indices: 85062330--85062493 Score: 247
Period size: 82 Copynumber: 2.0 Consensus size: 82
85062320 GGCCCTGTTT
* *
85062330 CACGAAAACCTAAACATCTCTTAATATACAACTCATATGACCGTTTCGTTTCTTCCATATGAAAG
1 CACGAAAACCTAAACATCTCTTAAAATACAACTCATATGACCATTTCGTTTCTTCCATATGAAAG
85062395 TAGATTCATCAAGGTTC
66 TAGATTCATCAAGGTTC
* * * * * **
85062412 CACGAAAACTTAAATATTTCTTAAAATGCGACTCATATGTTCATTTCGTTTCTTCCATATGAAAG
1 CACGAAAACCTAAACATCTCTTAAAATACAACTCATATGACCATTTCGTTTCTTCCATATGAAAG
85062477 TAGATTCATCAAGGTTC
66 TAGATTCATCAAGGTTC
85062494 GATTACATCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 73 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.34
Consensus pattern (82 bp):
CACGAAAACCTAAACATCTCTTAAAATACAACTCATATGACCATTTCGTTTCTTCCATATGAAAG
TAGATTCATCAAGGTTC
Found at i:85063499 original size:41 final size:40
Alignment explanation
Indices: 85063364--85063513 Score: 176
Period size: 40 Copynumber: 3.7 Consensus size: 40
85063354 ATAGTAGTTC
* * *
85063364 GCACAATTGCCTTCGGGAATTAACCCGGATCTAGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
* * *
85063404 GCACAAATGCCTTCGGGACTTAACCC-AATTTTGGTAACTA
1 GCACAAATGCCTTCGGGAATTAACCCGGA-TTTAGTAACTA
* *
85063444 GCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-TA
* * *
85063485 GCACAAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGAATTAACCCGGA
85063514 CATCATTCGA
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
Found at i:85075712 original size:16 final size:16
Alignment explanation
Indices: 85075691--85075722 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
85075681 TTGTAAAAAT
85075691 GAGTCTAGTCCTCGTA
1 GAGTCTAGTCCTCGTA
85075707 GAGTCTAGTCCTCGTA
1 GAGTCTAGTCCTCGTA
85075723 CACCTTGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (16 bp):
GAGTCTAGTCCTCGTA
Found at i:85075872 original size:30 final size:31
Alignment explanation
Indices: 85075833--85075890 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
85075823 ATAGACCACA
*
85075833 TTTTGGCAAAATGACCATTTTTCCCCTAGGC
1 TTTTGGCAAAATGACCATTTTACCCCTAGGC
* *
85075864 TTTT-GCAAAATTACGATTTTACCCCTA
1 TTTTGGCAAAATGACCATTTTACCCCTA
85075891 TGTTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (31 bp):
TTTTGGCAAAATGACCATTTTACCCCTAGGC
Found at i:85081133 original size:22 final size:22
Alignment explanation
Indices: 85081100--85081142 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
85081090 AAATAACAAT
*
85081100 AATTAATCAAAAATAATTATGA
1 AATTAATCAAAAATAAATATGA
*
85081122 AATTAA-CTAAAATTAAATATG
1 AATTAATC-AAAAATAAATATG
85081143 TTCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (22 bp):
AATTAATCAAAAATAAATATGA
Found at i:85095508 original size:56 final size:56
Alignment explanation
Indices: 85095441--85095555 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
85095431 AAGCTCAGTG
85095441 AATGTCAATAAAAATGACTAGTAAATTAACATCCAATTCATACTTAATTCACAACC
1 AATGTCAATAAAAATGACTAGTAAATTAACATCCAATTCATACTTAATTCACAACC
85095497 AATGTCAATAAAAATGACTAGTAAATTAACATCCAATTCATACTTAATTCACAACC
1 AATGTCAATAAAAATGACTAGTAAATTAACATCCAATTCATACTTAATTCACAACC
85095553 AAT
1 AAT
85095556 CATTCACTAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.29
Consensus pattern (56 bp):
AATGTCAATAAAAATGACTAGTAAATTAACATCCAATTCATACTTAATTCACAACC
Found at i:85098089 original size:15 final size:16
Alignment explanation
Indices: 85098068--85098110 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
85098058 TTCTATAGTC
85098068 TTCTATAGTTTCACAA
1 TTCTATAGTTTCACAA
*
85098084 -TCTATAGTTTTTACAA
1 TTCTATAG-TTTCACAA
85098100 TTCTATAGTTT
1 TTCTATAGTTT
85098111 TCAAAGTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 7 0.29
16 10 0.42
17 7 0.29
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.51
Consensus pattern (16 bp):
TTCTATAGTTTCACAA
Found at i:85098106 original size:17 final size:17
Alignment explanation
Indices: 85098068--85098113 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
85098058 TTCTATAGTC
85098068 TTCTATAG-TTTCACAA
1 TTCTATAGTTTTCACAA
*
85098084 -TCTATAGTTTTTACAA
1 TTCTATAGTTTTCACAA
85098100 TTCTATAGTTTTCA
1 TTCTATAGTTTTCA
85098114 AAGTCTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 7 0.27
17 12 0.46
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (17 bp):
TTCTATAGTTTTCACAA
Found at i:85101601 original size:16 final size:16
Alignment explanation
Indices: 85101576--85101607 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85101566 ATGTGATCCA
85101576 AAAATCATATTTTTGC
1 AAAATCATATTTTTGC
*
85101592 AAAATTATATTTTTGC
1 AAAATCATATTTTTGC
85101608 CCCTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
AAAATCATATTTTTGC
Found at i:85109384 original size:28 final size:28
Alignment explanation
Indices: 85109352--85109421 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
85109342 ATAATAAGCC
*
85109352 CGCACACTTAGTGCT-TAATAGTCAAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
85109380 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
85109408 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85109422 CAATTCATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 39 0.98
29 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85111592 original size:51 final size:51
Alignment explanation
Indices: 85111516--85111625 Score: 211
Period size: 51 Copynumber: 2.2 Consensus size: 51
85111506 AAAAAATAGG
85111516 AAAATATCACAACAAAGCAAAAGCACGCAAAGTGTTTGAGTAAATGCTCTC
1 AAAATATCACAACAAAGCAAAAGCACGCAAAGTGTTTGAGTAAATGCTCTC
85111567 AAAATATCACAACAAAGCAAAAGCACGCAAAGTGTTTGAGTAAATGCTCTC
1 AAAATATCACAACAAAGCAAAAGCACGCAAAGTGTTTGAGTAAATGCTCTC
*
85111618 AAAGTATC
1 AAAATATC
85111626 TCTATTACTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.20
Consensus pattern (51 bp):
AAAATATCACAACAAAGCAAAAGCACGCAAAGTGTTTGAGTAAATGCTCTC
Found at i:85112440 original size:48 final size:48
Alignment explanation
Indices: 85112344--85112441 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
85112334 AGTGGATTCA
* * * **
85112344 ATGGAAATAAGTAGTAGAAGTACACGTGCTGAGGCCTAATGCTGTAGC
1 ATGGAAACAAGTAGTAGAAATACACGTGCTGAGGCCCAATGCCATAGC
*
85112392 ATGGAAACAAGTAGTAGAAATATACGTGCTGAGGCCCAATGCCATAGC
1 ATGGAAACAAGTAGTAGAAATACACGTGCTGAGGCCCAATGCCATAGC
85112440 AT
1 AT
85112442 TGGCCCAACG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (48 bp):
ATGGAAACAAGTAGTAGAAATACACGTGCTGAGGCCCAATGCCATAGC
Found at i:85123425 original size:31 final size:31
Alignment explanation
Indices: 85123358--85123426 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
85123348 TTGGTTATTA
* *
85123358 AATTATTCAAAAATTTTCTTTTAAGTCACTG
1 AATTATTCAAAAATTTTCATTTAAGTAACTG
* *
85123389 AATTATTCAAAAGTTTGT-ATTTAAGTAATTG
1 AATTATTCAAAAATTT-TCATTTAAGTAACTG
*
85123420 GATTATT
1 AATTATT
85123427 AAGTTTTCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (31 bp):
AATTATTCAAAAATTTTCATTTAAGTAACTG
Found at i:85126600 original size:21 final size:21
Alignment explanation
Indices: 85126559--85126600 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
85126549 GACCCATGCA
*
85126559 TGTTTGTAATTTACTTGGTAG
1 TGTTTGTAATTTACTTCGTAG
*
85126580 TGTTTGTAATTTAGTTCGTAG
1 TGTTTGTAATTTACTTCGTAG
85126601 CCATGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52
Consensus pattern (21 bp):
TGTTTGTAATTTACTTCGTAG
Found at i:85126678 original size:138 final size:138
Alignment explanation
Indices: 85126430--85126698 Score: 493
Period size: 138 Copynumber: 1.9 Consensus size: 138
85126420 CACTGCTTCT
*
85126430 TTTACTTAGTAGTGTTTGTGATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
85126495 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
85126560 GTTTGTAA
131 GTTTGTAA
* * *
85126568 TTTACTTGGTAGTGTTTGTAATTTAGTTCGTAGCCATGATTTTCTTGGATGACTAGTTTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
*
85126633 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGGTAATTGGTTTGAGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
85126698 G
131 G
85126699 ATTATAATGA
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 126 1.00
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.43
Consensus pattern (138 bp):
TTTACTTAGTAGTGTTTGTAATTTAATTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
GTTTGTAA
Found at i:85129467 original size:31 final size:31
Alignment explanation
Indices: 85129429--85129487 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
85129419 CTCGTCACAC
85129429 GTTATGTTCATTTACAACCGTACATTTAGGA
1 GTTATGTTCATTTACAACCGTACATTTAGGA
*
85129460 GTTATGTTCATTTACAACCGTATATTTA
1 GTTATGTTCATTTACAACCGTACATTTA
85129488 AGAGAGCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (31 bp):
GTTATGTTCATTTACAACCGTACATTTAGGA
Found at i:85139448 original size:18 final size:18
Alignment explanation
Indices: 85139427--85139493 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
85139417 TATTTATCTA
* *
85139427 GTAACAGTCACTTATTCG
1 GTAACAATCAATTATTCG
*
85139445 GTAACAATCAATTATTCA
1 GTAACAATCAATTATTCG
* * *
85139463 ATAATAA-CAAATTATTCA
1 GTAACAATC-AATTATTCG
*
85139481 GTATCAATCAATT
1 GTAACAATCAATT
85139494 GATCGGTTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
17 1 0.03
18 37 0.95
19 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (18 bp):
GTAACAATCAATTATTCG
Found at i:85139527 original size:18 final size:18
Alignment explanation
Indices: 85139500--85139690 Score: 120
Period size: 18 Copynumber: 10.6 Consensus size: 18
85139490 AATTGATCGG
*
85139500 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
85139518 TTATTTAGTAA-AATC-A
1 TTATTCAGTAACAGTCAA
* * * *
85139534 TATATTCAATAGCAATTAA
1 T-TATTCAGTAACAGTCAA
* * *
85139553 GTTATTCAGTAATAGTTAT
1 -TTATTCAGTAACAGTCAA
* * *
85139572 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAGTCAA
*
85139590 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * * *
85139608 TTATTTAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
*
85139626 TTATTCAGTAACAGTCTA
1 TTATTCAGTAACAGTCAA
*
85139644 TTA-TCTAGTAACAGACAA
1 TTATTC-AGTAACAGTCAA
* *
85139662 TTATTCGGTAATAGTCAA
1 TTATTCAGTAACAGTCAA
85139680 TTATTCAGTAA
1 TTATTCAGTAA
85139691 TAATCAGTTA
Statistics
Matches: 129, Mismatches: 36, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
16 2 0.02
17 12 0.09
18 99 0.77
19 15 0.12
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:85139592 original size:36 final size:36
Alignment explanation
Indices: 85139500--85139702 Score: 155
Period size: 36 Copynumber: 5.6 Consensus size: 36
85139490 AATTGATCGG
* * * * *
85139500 TTATCCAGTAACAGTCAATTATTTAGTAA-AATC-A
1 TTATTCAGTAACAATCAGTTATTCAGTAATAGTCAA
* * * * *
85139534 TATATTCAATAGCAATTAAGTTATTCAGTAATAGTTAT
1 T-TATTCAGTAACAA-TCAGTTATTCAGTAATAGTCAA
*
85139572 TTATTCAGTGACAATCAGTTATTCAGTAAT-GATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAATAG-TCAA
* * * * *
85139608 TTATTTAGTAATATTCAGTTATTCAGTAACAGTCTA
1 TTATTCAGTAACAATCAGTTATTCAGTAATAGTCAA
* *
85139644 TTA-TCTAGTAACAGA-CAATTATTCGGTAATAGTCAA
1 TTATTC-AGTAACA-ATCAGTTATTCAGTAATAGTCAA
*
85139680 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
85139703 TTATACCTTT
Statistics
Matches: 128, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
34 1 0.01
35 12 0.09
36 99 0.77
37 15 0.12
38 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAATAGTCAA
Found at i:85139612 original size:54 final size:55
Alignment explanation
Indices: 85139554--85139702 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 55
85139544 AGCAATTAAG
* * *
85139554 TTATTCAGTAATAGTTATTTATTCAGTGACAATCAGTTATTC-AGTAA-TGATCAA
1 TTATTCAGTAATAGTTAATTATTCAGTAACAATCAGTTATTCTAGTAACAGA-CAA
* * *
85139608 TTATTTAGTAATA-TTCAGTTATTCAGTAACAGTCTA-TTA-TCTAGTAACAGACAA
1 TTATTCAGTAATAGTT-AATTATTCAGTAACAATC-AGTTATTCTAGTAACAGACAA
* * *
85139662 TTATTCGGTAATAGTCAATTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAATAGTTAATTATTCAGTAACAATCAGTTATT
85139703 TTATACCTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
53 5 0.06
54 67 0.87
55 5 0.06
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (55 bp):
TTATTCAGTAATAGTTAATTATTCAGTAACAATCAGTTATTCTAGTAACAGACAA
Found at i:85139691 original size:18 final size:18
Alignment explanation
Indices: 85139554--85139702 Score: 122
Period size: 18 Copynumber: 8.3 Consensus size: 18
85139544 AGCAATTAAG
* *
85139554 TTATTCAGTAATAGTTAT
1 TTATTCAGTAATAGTCAA
* * * *
85139572 TTATTCAGTGACAATCAG
1 TTATTCAGTAATAGTCAA
85139590 TTATTCAGTAAT-GATCAA
1 TTATTCAGTAATAG-TCAA
* * *
85139608 TTATTTAGTAATATTCAG
1 TTATTCAGTAATAGTCAA
* *
85139626 TTATTCAGTAACAGTCTA
1 TTATTCAGTAATAGTCAA
* *
85139644 TTA-TCTAGTAACAGACAA
1 TTATTC-AGTAATAGTCAA
*
85139662 TTATTCGGTAATAGTCAA
1 TTATTCAGTAATAGTCAA
* *
85139680 TTATTCAGTAATAATCAG
1 TTATTCAGTAATAGTCAA
85139698 TTATT
1 TTATT
85139703 TTATACCTTT
Statistics
Matches: 102, Mismatches: 25, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
17 2 0.02
18 98 0.96
19 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAATAGTCAA
Found at i:85139877 original size:6 final size:6
Alignment explanation
Indices: 85139866--85139890 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85139856 ACAAATCTGG
85139866 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
85139891 TTCAACACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:85139944 original size:45 final size:45
Alignment explanation
Indices: 85139871--85139980 Score: 159
Period size: 45 Copynumber: 2.4 Consensus size: 45
85139861 TCTGGAACAG
*
85139871 TAACAGTAACAGTAACAGTATTCAACACATAAAGTG-CTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCGA
* * *
85139916 TAACGGTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
*
85139961 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
85139981 ACAGTAGTCG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
Found at i:85139971 original size:51 final size:49
Alignment explanation
Indices: 85139865--85139995 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 49
85139855 AACAAATCTG
* * *
85139865 GAACAGTAACAGTAACAGTAACAGTATTCAACACATAAAGTGCTGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
85139914 G---A-TAACGGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATC
* *
85139959 GGTAACAGTAACGGTAACAGTAACAGTAGTCGGCACA
1 -G-AACAGTAACGGTAACAGTAACAGTATTCGACACA
85139996 TAAGTGCCTG
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
44 1 0.01
45 38 0.54
46 2 0.03
49 1 0.01
50 1 0.01
51 27 0.39
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (49 bp):
GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
Found at i:85139975 original size:12 final size:12
Alignment explanation
Indices: 85139958--85139982 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85139948 AGTGTCGAAT
85139958 CGGTAACAGTAA
1 CGGTAACAGTAA
85139970 CGGTAACAGTAA
1 CGGTAACAGTAA
85139982 C
1 C
85139983 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:85141711 original size:5 final size:5
Alignment explanation
Indices: 85141701--85141758 Score: 107
Period size: 5 Copynumber: 11.4 Consensus size: 5
85141691 TTACTTATTT
85141701 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
85141751 ATAATA AT
1 AT-ATA AT
85141759 TTCTTATATT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 47 0.90
6 5 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:85141885 original size:21 final size:22
Alignment explanation
Indices: 85141846--85141898 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
85141836 CATACAATTG
*
85141846 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
85141868 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
85141888 ATAAAATAATA
1 TTAAAATAATA
85141899 ATATAGTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 10 0.38
22 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:85146351 original size:18 final size:18
Alignment explanation
Indices: 85146317--85146612 Score: 143
Period size: 18 Copynumber: 16.1 Consensus size: 18
85146307 TCGTTAACAA
* *
85146317 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* *
85146334 TCAGTAACAGTCACTTAT
1 TCAGTAACAATCAATTAT
*
85146352 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
85146370 TCAATAATAACCAATTAT
1 TCAGTAACAATCAATTAT
*
85146388 TCAGTATCAATCAATTGATCGGTT
1 TCAGTAACAATCAATT-A-----T
* *
85146412 ATCCAGTAATAGTCAATTAT
1 -T-CAGTAACAATCAATTAT
*
85146432 TTAGTAA-AATCAGA-TAT
1 TCAGTAACAATCA-ATTAT
* ** *
85146449 TCAATAGTAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* *
85146468 TCAGTAACAGTCATTTAT
1 TCAGTAACAATCAATTAT
* *
85146486 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
* **
85146504 TTAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * * *
85146522 TTAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
* *
85146540 TCAGTAACAGTCTATTA-
1 TCAGTAACAATCAATTAT
85146557 TCTAGTAACAGA-CAATTAT
1 TC-AGTAACA-ATCAATTAT
* * *
85146576 TCGGTAATAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
85146594 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
85146612 T
1 T
85146613 TTATACCTTT
Statistics
Matches: 209, Mismatches: 53, Indels: 33
0.71 0.18 0.11
Matches are distributed among these distances:
17 18 0.09
18 160 0.77
19 15 0.07
20 1 0.00
24 1 0.00
25 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:85146522 original size:54 final size:54
Alignment explanation
Indices: 85146410--85146613 Score: 175
Period size: 54 Copynumber: 3.8 Consensus size: 54
85146400 AATTGATCGG
* * * ** *
85146410 TTATCCAGTAATAGTCAATTATTTAGTAA-AATCAGATATTCAATAGTAA-TTA-AG
1 TTATTCAGTAATAGTCAATTATTCAGTAACAATCAGTTATT---TAGTAACAGACAA
* * * *
85146464 TTATTCAGTAACAGTCATTTATTCAGTGACAATCAGTTATTTAGTAA-TGATCAA
1 TTATTCAGTAATAGTCAATTATTCAGTAACAATCAGTTATTTAGTAACAGA-CAA
* * * * *
85146518 TTATTTAGTAATATTCAGTTATTCAGTAACAGTCTA-TTATCTAGTAACAGACAA
1 TTATTCAGTAATAGTCAATTATTCAGTAACAATC-AGTTATTTAGTAACAGACAA
* *
85146572 TTATTCGGTAATAGTCAATTATTCAGTAATAATCAGTTATTT
1 TTATTCAGTAATAGTCAATTATTCAGTAACAATCAGTTATTT
85146614 TATACCTTTA
Statistics
Matches: 121, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
52 8 0.07
53 1 0.01
54 99 0.82
55 13 0.11
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (54 bp):
TTATTCAGTAATAGTCAATTATTCAGTAACAATCAGTTATTTAGTAACAGACAA
Found at i:85146787 original size:6 final size:6
Alignment explanation
Indices: 85146776--85146800 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85146766 ACAAATCTGG
85146776 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
85146801 TTCAACACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:85146854 original size:45 final size:45
Alignment explanation
Indices: 85146781--85146890 Score: 159
Period size: 45 Copynumber: 2.4 Consensus size: 45
85146771 TCTGGAACAG
*
85146781 TAACAGTAACAGTAACAGTATTCAACACATAAAGTG-CTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCGA
* * *
85146826 TAACGGTAACAGTAACAGTATTCGACACACAAAGTGTCGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
*
85146871 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
85146891 ACAGTAGTCG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCGA
Found at i:85146881 original size:51 final size:49
Alignment explanation
Indices: 85146775--85146905 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 49
85146765 AACAAATCTG
* * *
85146775 GAACAGTAACAGTAACAGTAACAGTATTCAACACATAAAGTGCTGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
85146824 G---A-TAACGGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATC
1 GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATC
* *
85146869 GGTAACAGTAACGGTAACAGTAACAGTAGTCGGCACA
1 -G-AACAGTAACGGTAACAGTAACAGTATTCGACACA
85146906 TAAGTGCCTG
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
44 1 0.01
45 38 0.54
46 2 0.03
49 1 0.01
50 1 0.01
51 27 0.39
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (49 bp):
GAACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
Found at i:85146885 original size:12 final size:12
Alignment explanation
Indices: 85146868--85146892 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85146858 AGTGTCGAAT
85146868 CGGTAACAGTAA
1 CGGTAACAGTAA
85146880 CGGTAACAGTAA
1 CGGTAACAGTAA
85146892 C
1 C
85146893 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:85147158 original size:2 final size:2
Alignment explanation
Indices: 85147151--85147178 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85147141 ATTCAATTCA
85147151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85147179 CTCAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85148668 original size:5 final size:5
Alignment explanation
Indices: 85148660--85148703 Score: 79
Period size: 5 Copynumber: 8.6 Consensus size: 5
85148650 TTTATATAAT
85148660 ATATA ATATA ATATA ATATA ATATA ATAATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATA
85148704 ACAATTTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:85148695 original size:26 final size:27
Alignment explanation
Indices: 85148653--85148703 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
85148643 TTACTTATTT
85148653 ATATAATATATAATATAATATAATATA
1 ATATAATATATAATATAATATAATATA
85148680 ATATAATA-ATAATATAATATAATA
1 ATATAATATATAATATAATATAATA
85148704 ACAATTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
ATATAATATATAATATAATATAATATA
Found at i:85150200 original size:40 final size:40
Alignment explanation
Indices: 85150155--85150284 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
85150145 CGGAATATAA
*
85150155 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85150195 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
85150235 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
85150275 CCGGATATAA
1 CCGGATATAA
85150285 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 72 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85153248 original size:43 final size:43
Alignment explanation
Indices: 85153181--85153286 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
85153171 GTTTATTTGA
* * *
85153181 AAAAATGCCGCTAAAGATCAAGACCTTT-AGCGGCGCTTTT-CT
1 AAAAACGCCGCTAAAGGTCAAGACCTTTCA-CGGCGCTTTTCCC
* *
85153223 AACAACCGCCGCTAAAGGTCAAGACCTTTCACTGCGCTTTTCCC
1 AA-AAACGCCGCTAAAGGTCAAGACCTTTCACGGCGCTTTTCCC
*
85153267 AAAAACGCTGCTAAAGGTCA
1 AAAAACGCCGCTAAAGGTCA
85153287 TAAAAATTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 2 0.04
43 48 0.89
44 4 0.07
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGGTCAAGACCTTTCACGGCGCTTTTCCC
Found at i:85153317 original size:17 final size:16
Alignment explanation
Indices: 85153286--85153319 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
85153276 GCTAAAGGTC
85153286 ATAAAAATTAAAAAAA
1 ATAAAAATTAAAAAAA
85153302 ATAAAATATTATAAAAAA
1 ATAAAA-ATTA-AAAAAA
85153320 GTCCTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATTAAAAAAA
Found at i:85153958 original size:12 final size:12
Alignment explanation
Indices: 85153941--85153973 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
85153931 TTGAAGAACC
85153941 ATTAATCATGTT
1 ATTAATCATGTT
85153953 ATTAATCATGTT
1 ATTAATCATGTT
85153965 ATTAATCAT
1 ATTAATCAT
85153974 ATATGCAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (12 bp):
ATTAATCATGTT
Found at i:85157544 original size:15 final size:15
Alignment explanation
Indices: 85157497--85157545 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
85157487 CCCCTATCAC
*
85157497 CACCTCTTCCACCAC
1 CACCTCTTCCACCAT
* *
85157512 CTCCTCTTCC-TC-T
1 CACCTCTTCCACCAT
85157525 C-CCTCTTCCACCAT
1 CACCTCTTCCACCAT
85157539 CACCTCT
1 CACCTCT
85157546 GCCCCTAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 8 0.30
13 2 0.07
14 3 0.11
15 14 0.52
ACGTcount: A:0.12, C:0.57, G:0.00, T:0.31
Consensus pattern (15 bp):
CACCTCTTCCACCAT
Found at i:85158039 original size:23 final size:22
Alignment explanation
Indices: 85158013--85158075 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 22
85158003 TAAAAAATGC
85158013 TAATACAATTACATATAAAATTT
1 TAATA-AATTACATATAAAATTT
*
85158036 TAATAAATATAAAT-TAAAAATTT
1 TAATAAAT-TACATAT-AAAATTT
85158059 TAATATAATTACATATA
1 TAATA-AATTACATATA
85158076 TAGGATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATAAATTACATATAAAATTT
Found at i:85159253 original size:7 final size:7
Alignment explanation
Indices: 85159241--85159362 Score: 70
Period size: 7 Copynumber: 17.1 Consensus size: 7
85159231 ACTAATTAAT
85159241 CTAAACC
1 CTAAACC
85159248 CTAAACC
1 CTAAACC
*
85159255 TCTTAACCC
1 -C-TAAACC
*
85159264 CT-ATCC
1 CTAAACC
*
85159270 CATAAACA
1 C-TAAACC
*
85159278 CTAAACT
1 CTAAACC
85159285 CTAAACC
1 CTAAACC
*
85159292 CTTAACC
1 CTAAACC
*
85159299 CCAAACC
1 CTAAACC
*
85159306 CTTACACC
1 C-TAAACC
* *
85159314 TTAAACT
1 CTAAACC
85159321 CT-AACC
1 CTAAACC
85159327 CT-AACC
1 CTAAACC
85159333 CTTAAACC
1 C-TAAACC
*
85159341 CTAAATC
1 CTAAACC
* *
85159348 ATAATCC
1 CTAAACC
85159355 CTAAACC
1 CTAAACC
85159362 C
1 C
85159363 ATAATTCATC
Statistics
Matches: 86, Mismatches: 22, Indels: 14
0.70 0.18 0.11
Matches are distributed among these distances:
6 14 0.16
7 53 0.62
8 14 0.16
9 5 0.06
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:85159319 original size:36 final size:36
Alignment explanation
Indices: 85159241--85159342 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 36
85159231 ACTAATTAAT
* * * *
85159241 CTAAACCCTAAACCTCTTAACCCCTATCCCATAAACA
1 CTAAACTCTAAACC-CTTAACCCCAAACCCTTAAACA
*
85159278 CTAAACTCTAAACCCTTAACCCCAAACCCTTACAC-
1 CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
*
85159313 CTTAAACTCT-AACCC-TAACCCTTAAACCCT
1 C-TAAACTCTAAACCCTTAACCC-CAAACCCT
85159343 AAATCATAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
34 6 0.11
35 13 0.23
36 25 0.44
37 13 0.23
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (36 bp):
CTAAACTCTAAACCCTTAACCCCAAACCCTTAAACA
Found at i:85159334 original size:27 final size:28
Alignment explanation
Indices: 85159302--85159358 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
85159292 CTTAACCCCA
* *
85159302 AACCCTTACACCTTAAACTC-TAA-CCCT
1 AACCCTTAAACCCTAAA-TCATAATCCCT
85159329 AACCCTTAAACCCTAAATCATAATCCCT
1 AACCCTTAAACCCTAAATCATAATCCCT
85159357 AA
1 AA
85159359 ACCCATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.08
27 18 0.69
28 6 0.23
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.25
Consensus pattern (28 bp):
AACCCTTAAACCCTAAATCATAATCCCT
Found at i:85159431 original size:21 final size:21
Alignment explanation
Indices: 85159405--85159489 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
85159395 ACTCCTAAAC
*
85159405 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
85159426 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
85159451 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
85159472 CTTAAATCATAAACCATA
1 CTTAAACCATAAACCATA
85159490 AACTATAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:85159442 original size:46 final size:46
Alignment explanation
Indices: 85159389--85159482 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
85159379 CTTCAAATAC
*
85159389 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
*
85159435 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAATCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
85159481 TA
1 TA
85159483 AACCATAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:85159484 original size:7 final size:7
Alignment explanation
Indices: 85159400--85159497 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
85159390 AGTTAACTCC
*
85159400 TAAACCT
1 TAAACCA
*
85159407 TAAACCC
1 TAAACCA
85159414 TAAACCA
1 TAAACCA
* * *
85159421 TATATCT
1 TAAACCA
85159428 TAAACCA
1 TAAACCA
85159435 TAGTTAACTCA
1 TA---AAC-CA
*
85159446 TAAACCT
1 TAAACCA
*
85159453 TAAACCC
1 TAAACCA
85159460 TAAACCA
1 TAAACCA
* * *
85159467 TATATCT
1 TAAACCA
*
85159474 TAAATCA
1 TAAACCA
85159481 TAAACCA
1 TAAACCA
*
85159488 TAAACTA
1 TAAACCA
85159495 TAA
1 TAA
85159498 TGATAATTAA
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
7 59 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCA
Found at i:85159701 original size:41 final size:40
Alignment explanation
Indices: 85159655--85159896 Score: 247
Period size: 41 Copynumber: 6.0 Consensus size: 40
85159645 TTATATGACT
85159655 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGCTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTG-TC
* * *
85159696 TTTAGCGGCATTTTTACAAAAGCACCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTC-TGTC
* * *
85159737 TTTAGCTGCGTTTTGCCAAAAGCCCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-GTC
* * * * *
85159778 TTTAGTGGCGTTTTACCAAAAGCACTGCTAATGCTCAGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGTC
* * ** *
85159818 TTTAGCGGCGTTTTT-TATTAAAACGCCGCTGTTGCTCTGTT
1 TTTAGCGGCGTTTTTCCA--AAAGCGCCGCTAATGCTCTGTC
* *
85159859 TTTAGCGGCGTTTTAT--AAAAACGCCGCTATTGCTCTGT
1 TTTAGCGGCGTTTT-TCCAAAAGCGCCGCTAATGCTCTGT
85159897 ATTTTAAAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 21 0.12
40 17 0.10
41 130 0.76
42 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGTC
Found at i:85159941 original size:12 final size:12
Alignment explanation
Indices: 85159926--85159951 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85159916 ATTTTTTGAT
85159926 AAAACGCCGCTA
1 AAAACGCCGCTA
85159938 AAAACGCCGCTA
1 AAAACGCCGCTA
85159950 AA
1 AA
85159952 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Done.