Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 286 of 345
Found at i:85464033 original size:40 final size:39
Alignment explanation
Indices: 85463930--85464058 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
85463920 TGCTGGAAAT
* * *
85463930 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
85463970 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
85464010 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
85464050 TATATCCGG
1 TATATCCGG
85464059 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:85468449 original size:40 final size:39
Alignment explanation
Indices: 85468404--85468609 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 39
85468394 CGGAATACAA
*
85468404 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85468444 CCGGATAGAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85468483 CCGGATTTAACAACTTGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
85468522 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
85468562 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85468602 CCGGATAT
1 CCGGATAT
85468610 CATTCAATTG
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
38 4 0.03
39 61 0.44
40 70 0.51
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85468565 original size:79 final size:79
Alignment explanation
Indices: 85468404--85468608 Score: 211
Period size: 79 Copynumber: 2.6 Consensus size: 79
85468394 CGGAATACAA
* *
85468404 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
85468469 CCTTCGGTATTAGC
66 CCTTCGGTATTAAC
* * * **
85468483 CCGGATTTAACAACTTGCACGAATGCCTTC-GGTCTTAGCCCGGATGTGGTC-ACTAGCAC-AAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAAAT
*
85468545 GGCCTTCGGGTCTTAAC
65 -GCCTTC-GGTATTAAC
** ** * *
85468562 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
85468609 TCATTCAATT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
77 3 0.03
78 29 0.28
79 58 0.56
80 14 0.13
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGTATTAAC
Found at i:85476464 original size:40 final size:39
Alignment explanation
Indices: 85476419--85476626 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
85476409 CGGAATACAA
*
85476419 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85476459 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85476499 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
85476539 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
85476579 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85476619 CCGGATAT
1 CCGGATAT
85476627 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85476559 original size:80 final size:80
Alignment explanation
Indices: 85476419--85476625 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
85476409 CGGAATACAA
* * *
85476419 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
85476483 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
85476499 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
85476563 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
85476579 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
85476626 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:85481396 original size:40 final size:40
Alignment explanation
Indices: 85481352--85481535 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
85481342 GCTACTCATT
*
85481352 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
85481392 CAAATGCCTTCGGATCTTA--CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
85481430 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
85481470 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
85481511 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
85481536 CATCATTCGA
Statistics
Matches: 133, Mismatches: 5, Indels: 12
0.89 0.03 0.08
Matches are distributed among these distances:
38 35 0.26
39 5 0.04
40 82 0.62
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:85481462 original size:78 final size:81
Alignment explanation
Indices: 85481352--85481535 Score: 263
Period size: 78 Copynumber: 2.3 Consensus size: 81
85481342 GCTACTCATT
*
85481352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTA-CCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGCCGG
* *
85481415 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
*
85481430 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAG-CC
*
85481493 GGATATAGTCACTTAGCA
64 GGATATAGTAACTTAGCA
85481511 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85481536 CATCATTCGA
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
77 3 0.03
78 50 0.53
79 2 0.02
80 28 0.30
81 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGCCGG
ATATAGTAACTTAGCA
Found at i:85490504 original size:118 final size:118
Alignment explanation
Indices: 85490344--85490574 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
85490334 TATTTCCGGT
85490344 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
85490409 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
85490462 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
85490527 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
85490575 ATGGAAAACA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:85491399 original size:42 final size:42
Alignment explanation
Indices: 85491353--85491457 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
85491343 GGGATTCTAA
* * *
85491353 GGCTGAAATAGGACTGTTTGGCTGCAGAGATATGACATTCTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
* * * *
85491395 GGCTGGAATAGAACTGTTTGGCAGGAGGGATATGGCATTTTG
1 GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
85491437 GGCTGGAATAGAACTGTTTGG
1 GGCTGGAATAGAACTGTTTGG
85491458 TACCATGGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.25, C:0.11, G:0.35, T:0.29
Consensus pattern (42 bp):
GGCTGGAATAGAACTGTTTGGCAGCAGAGATATGACATTCTG
Found at i:85491575 original size:6 final size:5
Alignment explanation
Indices: 85491560--85491632 Score: 58
Period size: 5 Copynumber: 13.4 Consensus size: 5
85491550 ATTAATATTT
**
85491560 AAATA AAATA ATAATA ATAA-A AAATA AAATA AAATA AAGGA AAATAA
1 AAATA AAATA A-AATA A-AATA AAATA AAATA AAATA AAATA AAAT-A
85491607 TAAATAA AAATAA AAATAA AAATA AA
1 -AAAT-A AAAT-A AAAT-A AAATA AA
85491633 GATTGGGTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
4 2 0.03
5 27 0.45
6 25 0.42
7 6 0.10
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:85491608 original size:23 final size:21
Alignment explanation
Indices: 85491560--85491632 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 21
85491550 ATTAATATTT
*
85491560 AAATAAAATAATAAT-AATAAA
1 AAATAAAATAA-AATAAAGAAA
85491581 AAATAAAATAAAATAAAGGAAA
1 AAATAAAATAAAATAAA-GAAA
*
85491603 ATAAT-AAATAAAAATAAAAATAA
1 A-AATAAAAT-AAAATAAAGA-AA
85491626 AAATAAA
1 AAATAAA
85491633 GATTGGGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
20 3 0.07
21 13 0.30
22 12 0.27
23 16 0.36
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (21 bp):
AAATAAAATAAAATAAAGAAA
Found at i:85499637 original size:3 final size:3
Alignment explanation
Indices: 85499453--85499625 Score: 170
Period size: 3 Copynumber: 56.3 Consensus size: 3
85499443 CTTTAACAAT
85499453 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -AT-A
* * *
85499500 AGA ATA ATA ATA ATA CATTA ATA ATA ATA ATA ATA GTA A-A GACA ATA
1 ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * *
85499547 ATA ATA AGA ATG ATA ATA ATA ATA CTA CTT CTA ATA ATA ATA GA-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * *
85499592 GTA ATA ATA GTA ACA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
85499626 ATTTAATAAT
Statistics
Matches: 143, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
2 1 0.01
3 132 0.92
4 7 0.05
5 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:85501179 original size:44 final size:44
Alignment explanation
Indices: 85500970--85501743 Score: 486
Period size: 44 Copynumber: 17.3 Consensus size: 44
85500960 TCCGTAACTT
* * * * *
85500970 GTAGCTTCAATTTGCTCCACTGCAACTTTAGGGAAATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
** * *
85501014 GCTATTTTTAGTCTGCTCCTACTGCAACTTCGGGGAGATAAGATTCGTGA
1 G-TAGCTTTAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGA-T--T-A
* * * ** * * * *
85501064 TTTGTAGCTTCAACCTACTCCACTAAAAGTTTAGGGAAATTAGATTCA
1 ---GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-A
* * * * * * **
85501112 TTATCTTTAGTCTGCTTCGCTGCAACTTCAAGGAGATAAGCCTA
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
* * *
85501156 GTGGCTTTAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCT-
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TA
* * ** ** *
85501200 GCCATCTTCGATCTATTCCACTGCAACTTCAAGGAGATAAGATCTA
1 G-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TA
* * * * * * * *
85501246 -CAACTTCAATTTTCTCTATTGCTACTTCAGGGAGAT-AGCATTA
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTA
* * * *
85501289 GTAGCTTCAATCTGCTCTACTGCTACTTTAGGGAGAT-AGTATTA
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTA
* * * * *
85501333 GTAGCTTCAAGCTGCTCCGCTGCAACTTTAGGGAGATAAGATTG
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
* * * * *
85501377 GTATCTTTAGTCTTCTCCACTACAACTTTAGGGAGATAAGACTT-
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTA
** ** * * *
85501421 GTAATTTTAGCCTGCTCTACTGCAACTTCAGAGAGATAAGGTTA
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
*
85501465 GT-GATTGTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
1 GTAGCTT-TAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
* * * *
85501509 ATAGCTTCAATCTG-TGCCGCTGCAACTTCAGGGAGATAAGATTG
1 GTAGCTTTAATCTGCT-CCACTGCAACTTCAGGGAGATAAGATTA
* * * * *
85501553 GTATCTTCAGTCTGCTCTACTGCAACTTCAGGAAGATAAGACTT-
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTA
* * * * * *
85501597 GTAACTTTAACCTGCCCCACTGCAACTTCAGGGGGATAAGGTTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
* ** *
85501641 GCTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-
1 G-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TA
* * * * *
85501686 GTAACTTAAATCTGCTCCACTACAACTTCAGAGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
85501730 GTAGCTTTAATCTG
1 GTAGCTTTAATCTG
85501744 TTTCATCACA
Statistics
Matches: 563, Mismatches: 141, Indels: 52
0.74 0.19 0.07
Matches are distributed among these distances:
43 12 0.02
44 381 0.68
45 116 0.21
46 21 0.04
47 1 0.00
48 2 0.00
49 1 0.00
50 1 0.00
51 16 0.03
52 11 0.02
53 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
GTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
Found at i:85508295 original size:47 final size:47
Alignment explanation
Indices: 85508223--85508497 Score: 206
Period size: 46 Copynumber: 5.9 Consensus size: 47
85508213 TGGGTAGAAT
* * *
85508223 GCCGATGCCATATCCCAAACATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
** * * *
85508270 GTTGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCGTCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATC-TC-AA
** * * *
85508319 GCCGGCGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-AA
* * * * * ** * *
85508365 GTCGAT-ACATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATC-TCAA
* * *
85508411 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTC-TCGTCTTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA
85508456 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATA
85508498 ATAACCCATA
Statistics
Matches: 176, Mismatches: 39, Indels: 25
0.73 0.16 0.10
Matches are distributed among these distances:
44 10 0.06
45 16 0.09
46 52 0.30
47 49 0.28
48 18 0.10
49 31 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
Found at i:85519577 original size:3 final size:3
Alignment explanation
Indices: 85519562--85519706 Score: 177
Period size: 3 Copynumber: 48.0 Consensus size: 3
85519552 GTTTAACAAT
* *
85519562 ATA ATA ATG ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
85519609 ACA ATA ATA ATA GATAA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
85519656 ATA ATA ATA ATA ATA ATA ATA GTA A-A GACA ATA ATA ATA AGA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
85519701 ATA ATA
1 ATA ATA
85519707 CCACTACTAC
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.02
3 115 0.94
4 4 0.03
5 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:85522190 original size:5 final size:5
Alignment explanation
Indices: 85522180--85522207 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
85522170 CTTTTATAGA
85522180 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
85522208 TCTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:85528309 original size:26 final size:26
Alignment explanation
Indices: 85528257--85528307 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
85528247 ATAATTCCTC
*
85528257 GTATGGAAAGAATAAAATAATTATTT
1 GTATGGAAAGAATAAAAGAATTATTT
*
85528283 GTATGGAAAGAATGAAAGAA-TATTT
1 GTATGGAAAGAATAAAAGAATTATTT
85528308 TGCTCAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (26 bp):
GTATGGAAAGAATAAAAGAATTATTT
Found at i:85531913 original size:19 final size:20
Alignment explanation
Indices: 85531889--85531935 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
85531879 TGGTGGACTT
* *
85531889 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
85531908 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
85531928 -AATGCAAA
1 TAATGCAAA
85531936 AAGGCGTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:85538588 original size:25 final size:25
Alignment explanation
Indices: 85538514--85538781 Score: 113
Period size: 25 Copynumber: 10.4 Consensus size: 25
85538504 AAAACGAAAC
*
85538514 AAAAT-AAT-ATATATAAAACAATTT
1 AAAATAAATAATATAT-AAACAAATT
* ** **
85538538 AAAGTAAATAGCATA-AAACATTTT
1 AAAATAAATAATATATAAACAAATT
85538562 AAAATAAATAATATATAAACAAATT
1 AAAATAAATAATATATAAACAAATT
* * *
85538587 AAAATAGATAATATACAAAGAAATTT
1 AAAATAAATAATATATAAACAAA-TT
* *
85538613 AAAATAGATAATATAT-AACACACTT
1 AAAATAAATAATATATAAACA-AATT
* * * **
85538638 TAAAT-AA-CATATA-AAAGAGTTT
1 AAAATAAATAATATATAAACAAATT
* * *
85538660 AAGATAAATAATATGTAAAAAGAAATCT
1 AAAATAAATAATA--TATAAACAAAT-T
* * *
85538688 AAAATAAATAATGTACAAA-ATAGTTT
1 AAAATAAATAATATATAAACA-A-ATT
* *
85538714 AAAAATAAAAGATATATATAAAAATAATT
1 -AAAAT-AAATA-ATATATAAACA-AATT
85538743 CAAAATAAATAATATATATAA-AAAGTTT
1 -AAAATAAATAATATATA-AACAAA--TT
85538771 AAAATAAATAA
1 AAAATAAATAA
85538782 CCTTTAAAAT
Statistics
Matches: 187, Mismatches: 36, Indels: 39
0.71 0.14 0.15
Matches are distributed among these distances:
22 5 0.03
23 10 0.05
24 28 0.15
25 40 0.21
26 32 0.17
27 31 0.17
28 24 0.13
29 14 0.07
30 3 0.02
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAATAAATAATATATAAACAAATT
Found at i:85538639 original size:26 final size:25
Alignment explanation
Indices: 85538514--85538641 Score: 118
Period size: 26 Copynumber: 5.1 Consensus size: 25
85538504 AAAACGAAAC
85538514 AAAATA-AT-ATATATAAAACAATTT
1 AAAATAGATAATATAT-AAACAATTT
* * ** *
85538538 AAAGTAAATAGCATA-AAACATTTT
1 AAAATAGATAATATATAAACAATTT
* *
85538562 AAAATAAATAATATATAAACAAATT
1 AAAATAGATAATATATAAACAATTT
* *
85538587 AAAATAGATAATATACAAAGAAATTT
1 AAAATAGATAATATATAAA-CAATTT
*
85538613 AAAATAGATAATATATAACACACTTT
1 AAAATAGATAATATATAA-ACAATTT
85538639 AAA
1 AAA
85538642 TAACATATAA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
24 25 0.30
25 26 0.31
26 31 0.37
27 1 0.01
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAATAGATAATATATAAACAATTT
Found at i:85538752 original size:56 final size:57
Alignment explanation
Indices: 85538648--85538778 Score: 144
Period size: 56 Copynumber: 2.3 Consensus size: 57
85538638 TAAATAACAT
* * * *
85538648 ATAAAAGAGTTTAAGAT-AAATA-ATATGTAAAAAGAAATCTAAAATAAATAATGTAC
1 ATAAAA-AGTTTAAAATAAAAGATATATATAAAAAGAAATCTAAAATAAATAATATAC
* * * *
85538704 A-AAATAGTTTAAAAATAAAAGATATATATAAAAATAATTC-AAAATAAATAATATAT
1 ATAAAAAGTTT-AAAATAAAAGATATATATAAAAAGAAATCTAAAATAAATAATATAC
85538760 ATAAAAAGTTTAAAATAAA
1 ATAAAAAGTTTAAAATAAA
85538779 TAACCTTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
54 5 0.08
55 7 0.11
56 28 0.45
57 22 0.35
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (57 bp):
ATAAAAAGTTTAAAATAAAAGATATATATAAAAAGAAATCTAAAATAAATAATATAC
Found at i:85538774 original size:27 final size:27
Alignment explanation
Indices: 85538638--85538904 Score: 122
Period size: 27 Copynumber: 9.7 Consensus size: 27
85538628 TAACACACTT
* * *
85538638 TAAATAACATATA-AAAGAGTTTAAGA
1 TAAATAATATATATAAAAAGTTTAAAA
* * * *
85538664 TAAATAATATGTAAAAAGAAATCTAAAA
1 TAAATAATATATATAAA-AAGTTTAAAA
* * *
85538692 TAAATAATGTACA-AAATAGTTTAAAAA
1 TAAATAATATATATAAAAAGTTT-AAAA
85538719 TAAA-AGATATATATAAAAA-TAATTCAAAA
1 TAAATA-ATATATATAAAAAGT--TT-AAAA
85538748 TAAATAATATATATAAAAAGTTTAAAA
1 TAAATAATATATATAAAAAGTTTAAAA
** *
85538775 TAAATAACCT-T-TAAAATGTTTAAAA
1 TAAATAATATATATAAAAAGTTTAAAA
** * **
85538800 TGGATAATAGTTTA-AAATACAGTGAAAAA
1 TAAATAATA-TATATAAA-A-AGTTTAAAA
*
85538829 CTTAAAATAA-ATAATAATAAAACAATTTAAAA
1 --T-AAATAATAT-AT-ATAAAA-AGTTTAAAA
* **
85538861 TAAATAATATA-AGAAAAAAATTAAAA
1 TAAATAATATATATAAAAAGTTTAAAA
85538887 TAAATAATA-ATAATAAAA
1 TAAATAATATAT-ATAAAA
85538905 CCGTTTTTTT
Statistics
Matches: 183, Mismatches: 35, Indels: 45
0.70 0.13 0.17
Matches are distributed among these distances:
25 19 0.10
26 34 0.19
27 46 0.25
28 23 0.13
29 36 0.20
30 6 0.03
31 3 0.02
32 13 0.07
33 3 0.02
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (27 bp):
TAAATAATATATATAAAAAGTTTAAAA
Found at i:85538863 original size:25 final size:25
Alignment explanation
Indices: 85538824--85538904 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
85538814 AAATACAGTG
*
85538824 AAAAACTTAAAATAAATAATAATAA
1 AAAAAATTAAAATAAATAATAATAA
* *
85538849 AACAATTTAAAATAAATAAT-ATAAGA
1 AAAAAATTAAAATAAATAATAAT-A-A
85538875 AAAAAATTAAAATAAATAATAATAA
1 AAAAAATTAAAATAAATAATAATAA
*
85538900 TAAAA
1 AAAAA
85538905 CCGTTTTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
24 2 0.04
25 24 0.50
26 20 0.42
27 2 0.04
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (25 bp):
AAAAAATTAAAATAAATAATAATAA
Found at i:85538891 original size:26 final size:25
Alignment explanation
Indices: 85538824--85538904 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 25
85538814 AAATACAGTG
*
85538824 AAAAACTTAAAATAAATAATA-ATAA
1 AAAAAATTAAAATAAATAATATA-AA
* *
85538849 AACAATTTAAAATAAATAATATAAGA
1 AAAAAATTAAAATAAATAATATAA-A
*
85538875 AAAAAATTAAAATAAATAATAATAAT
1 AAAAAATTAAAATAAATAAT-ATAAA
85538901 AAAA
1 AAAA
85538905 CCGTTTTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
25 20 0.42
26 24 0.50
27 4 0.08
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (25 bp):
AAAAAATTAAAATAAATAATATAAA
Found at i:85546039 original size:12 final size:12
Alignment explanation
Indices: 85546007--85546033 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
85545997 ATACCTAGCA
85546007 TGTCATATTTTT
1 TGTCATATTTTT
85546019 TGTCATATTTTT
1 TGTCATATTTTT
85546031 TGT
1 TGT
85546034 GTTATTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.11, T:0.67
Consensus pattern (12 bp):
TGTCATATTTTT
Found at i:85549439 original size:26 final size:26
Alignment explanation
Indices: 85549400--85549449 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
85549390 TTTTATCCCT
*
85549400 ATTTTACCCTTAGTAAAATTTTGACG
1 ATTTTACCCATAGTAAAATTTTGACG
* *
85549426 ATTTTACTCATAGTAAGATTTTGA
1 ATTTTACCCATAGTAAAATTTTGA
85549450 GAAAATATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (26 bp):
ATTTTACCCATAGTAAAATTTTGACG
Found at i:85553214 original size:24 final size:23
Alignment explanation
Indices: 85553161--85553229 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 23
85553151 GAGCTGATGG
85553161 ACAGTAAGCTCTATTGAGCT-AAA
1 ACAGTAAGCTCTA-TGAGCTGAAA
** *
85553184 ATGGTAAGCTCTGACGAGCTGAAA
1 ACAGTAAGCTCT-ATGAGCTGAAA
85553208 ACAGTAAGCTCTTATGAGCTGA
1 ACAGTAAGCTC-TATGAGCTGA
85553230 TATATCGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
23 15 0.41
24 21 0.57
25 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTATGAGCTGAAA
Found at i:85556547 original size:34 final size:34
Alignment explanation
Indices: 85556503--85556570 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
85556493 TGAAGCAATC
85556503 ATGCCACCGGTGTCACAATCATCGAAAATCCTTT
1 ATGCCACCGGTGTCACAATCATCGAAAATCCTTT
*
85556537 ATGCCGCCGGTGTCACAATCATCGAAAATCCTTT
1 ATGCCACCGGTGTCACAATCATCGAAAATCCTTT
85556571 CACGAATCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (34 bp):
ATGCCACCGGTGTCACAATCATCGAAAATCCTTT
Found at i:85561991 original size:42 final size:42
Alignment explanation
Indices: 85561944--85562145 Score: 156
Period size: 42 Copynumber: 4.6 Consensus size: 42
85561934 TGTGGTTTCG
85561944 TGTAAGACCATATTTGGGATATGGTC-TCAATATGTGATCCCA
1 TGTAAGACCATATTTGGGATATGG-CATCAATATGTGATCCCA
* ** *
85561986 TGTAAGATCATATTTGGGATATTGCATTGGCATCAATATGTGATTTCG
1 TGTAAGACCATATTTGGG--A-T--A-TGGCATCAATATGTGATCCCA
* * * * * *
85562034 TGTAAGACCATGTTTGGGACATGGCATCGATATGAGA-CATCG
1 TGTAAGACCATATTTGGGATATGGCATCAATATGTGATC-CCA
** * * *
85562076 TGTAAGACCATAGCTAGGCTATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATATTTGGGATA-TGGCATCAATATGTGATCCCA
* *
85562119 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATTTGGGATATGGCAT
85562146 TGGCATCTTA
Statistics
Matches: 129, Mismatches: 21, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
42 55 0.43
43 36 0.28
44 2 0.02
45 1 0.01
46 1 0.01
47 2 0.02
48 32 0.25
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGATATGGCATCAATATGTGATCCCA
Found at i:85562099 original size:90 final size:90
Alignment explanation
Indices: 85561934--85562099 Score: 192
Period size: 90 Copynumber: 1.8 Consensus size: 90
85561924 TAAGGTTATG
* * * * *
85561934 TGTGGTTTCGTGTAAGACCATATTTGGGATATGGTCTCAATATGTGATCCCATGTAAGATCATAT
1 TGTGATTTCGTGTAAGACCATATTTGGGACATGGTCTCAATATGAGATCCCATGTAAGACCATAG
* *
85561999 TTGGGATATTGCATTGGCATCAATA
66 CTAGGATATTGCATTGGCATCAATA
* * * *
85562024 TGTGATTTCGTGTAAGACCATGTTTGGGACATGG-CATCGATATGAGA-CATCGTGTAAGACCAT
1 TGTGATTTCGTGTAAGACCATATTTGGGACATGGTC-TCAATATGAGATC-CCATGTAAGACCAT
*
85562087 AGCTAGGCTATTG
64 AGCTAGGATATTG
85562100 GCATCGATAT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
89 2 0.03
90 60 0.97
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (90 bp):
TGTGATTTCGTGTAAGACCATATTTGGGACATGGTCTCAATATGAGATCCCATGTAAGACCATAG
CTAGGATATTGCATTGGCATCAATA
Found at i:85565175 original size:42 final size:43
Alignment explanation
Indices: 85565123--85565238 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 43
85565113 GGGCTACCGA
*
85565123 GATTCCGTATAAGACCATATCTGGGATATGACATC-AGTATG-T
1 GATTTCGTATAAGACCATATCTGGGATATGACATCGA-TATGAT
* * * * * *
85565165 GATTTCGTATAAGACCATGTCAGAGACATGGCGTCGATATGAT
1 GATTTCGTATAAGACCATATCTGGGATATGACATCGATATGAT
* *
85565208 -ATTTCATGTAAGACCATATCTGGGATATGAC
1 GATTTCGTATAAGACCATATCTGGGATATGAC
85565239 TTGATACGGT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
42 56 0.97
43 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (43 bp):
GATTTCGTATAAGACCATATCTGGGATATGACATCGATATGAT
Found at i:85567759 original size:34 final size:34
Alignment explanation
Indices: 85567721--85567791 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
85567711 CATGCACACC
85567721 AGATGAATGTATGAAATGTGTTGTATCACTCTTG
1 AGATGAATGTATGAAATGTGTTGTATCACTCTTG
*
85567755 AGATGGATGTATGAAATGTGTTGTATCACTCTTG
1 AGATGAATGTATGAAATGTGTTGTATCACTCTTG
85567789 AGA
1 AGA
85567792 GGCTTGGCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (34 bp):
AGATGAATGTATGAAATGTGTTGTATCACTCTTG
Found at i:85570166 original size:40 final size:40
Alignment explanation
Indices: 85570058--85570267 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85570048 CGGGATTTAA
* * * * *
85570058 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85570098 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85570138 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85570178 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85570218 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85570258 CCGGATATAT
1 CCGGATATAT
85570268 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85578299 original size:40 final size:40
Alignment explanation
Indices: 85578191--85578400 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85578181 CGGGATTTAA
* * * * *
85578191 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85578231 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85578271 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85578311 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85578351 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85578391 CCGGATATAT
1 CCGGATATAT
85578401 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85585759 original size:40 final size:40
Alignment explanation
Indices: 85585651--85585820 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
85585641 CGGGATTTAA
* * * * *
85585651 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85585691 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85585731 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85585771 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85585811 CCGGATATAT
1 CCGGATATAT
85585821 TTCAATGTTC
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85610441 original size:48 final size:48
Alignment explanation
Indices: 85610366--85610469 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
85610356 TATTCATATT
*
85610366 AATT-TATACTTATTATTTCATATTAATTATTACTTAATTAACTTTAC
1 AATTGTATACCTATTATTTCATATTAATTATTACTTAATTAACTTTAC
* * * *
85610413 AATTGTATACCTATTATTTTATATTAATTATTATTTAATTAATTTTAT
1 AATTGTATACCTATTATTTCATATTAATTATTACTTAATTAACTTTAC
85610461 AATTGTATA
1 AATTGTATA
85610470 TTAATTAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 4 0.08
48 47 0.92
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.55
Consensus pattern (48 bp):
AATTGTATACCTATTATTTCATATTAATTATTACTTAATTAACTTTAC
Found at i:85610446 original size:17 final size:17
Alignment explanation
Indices: 85610424--85610476 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 17
85610414 ATTGTATACC
85610424 TATTATTTTATATTAAT
1 TATTATTTTATATTAAT
85610441 TATTA-TTTA-ATTAAT
1 TATTATTTTATATTAAT
85610456 T-TTATAATTGTATATTAAT
1 TATTAT--TT-TATATTAAT
85610475 TA
1 TA
85610477 AAATTGAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 3 0.10
15 7 0.23
16 4 0.13
17 7 0.23
18 2 0.07
19 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTATTTTATATTAAT
Found at i:85611069 original size:2 final size:2
Alignment explanation
Indices: 85611062--85611087 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
85611052 AGTAGAGATA
85611062 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
85611088 CTTAATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85612833 original size:46 final size:43
Alignment explanation
Indices: 85612778--85612897 Score: 132
Period size: 46 Copynumber: 2.7 Consensus size: 43
85612768 ATGAAAGCCC
* *
85612778 TTTTATGAGATGTATGAGAGCCCTTAATGGGATGTATGAGAGCCTT
1 TTTTATGAGACGTATGAGAGCCCTT-ATGGGACGTATGAGAG-C-T
* * *
85612824 TTTTATGAGACATATGAGAACCCTTTATAGGACGTATGAGAGCT
1 TTTTATGAGACGTATGAGAGCCC-TTATGGGACGTATGAGAGCT
* * *
85612868 CTTTATGAGACGTATTAGAGCTCTTATGGG
1 TTTTATGAGACGTATGAGAGCCCTTATGGG
85612898 TGGCAAAGGA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
43 6 0.10
44 19 0.31
45 1 0.02
46 34 0.55
47 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (43 bp):
TTTTATGAGACGTATGAGAGCCCTTATGGGACGTATGAGAGCT
Found at i:85612889 original size:22 final size:22
Alignment explanation
Indices: 85612779--85612892 Score: 104
Period size: 22 Copynumber: 5.1 Consensus size: 22
85612769 TGAAAGCCCT
* *
85612779 TTTATGAGATGTATGAGAGCCC
1 TTTATGAGACGTATGAGAGCTC
* * * *
85612801 TTAATGGGATGTATGAGAGCCTTT
1 TTTATGAGACGTATGAGAG-C-TC
* * *
85612825 TTTATGAGACATATGAGAACCC
1 TTTATGAGACGTATGAGAGCTC
85612847 TTTAT-AGGACGTATGAGAGCTC
1 TTTATGA-GACGTATGAGAGCTC
*
85612869 TTTATGAGACGTATTAGAGCTC
1 TTTATGAGACGTATGAGAGCTC
85612891 TT
1 TT
85612893 ATGGGTGGCA
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
21 1 0.01
22 55 0.75
23 3 0.04
24 14 0.19
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (22 bp):
TTTATGAGACGTATGAGAGCTC
Found at i:85614807 original size:14 final size:14
Alignment explanation
Indices: 85614790--85614820 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
85614780 ATAAGTAAAT
85614790 TAAATATTATATTA
1 TAAATATTATATTA
*
85614804 TAAATGTTATATTA
1 TAAATATTATATTA
85614818 TAA
1 TAA
85614821 TATAAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAATATTATATTA
Found at i:85617021 original size:2 final size:2
Alignment explanation
Indices: 85617014--85617040 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
85617004 TGAATGCGTG
85617014 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
85617041 GATAGCCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85637497 original size:38 final size:38
Alignment explanation
Indices: 85637445--85637562 Score: 137
Period size: 38 Copynumber: 3.1 Consensus size: 38
85637435 ATGATAGTTT
*
85637445 TTAAATCCCACAGGCTTCGTGCTGGTATTATATTCGGG
1 TTAAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
* * ** *
85637483 TTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTAAGT
1 TTAAATCCCGCAGGCTTCGTGCTGGTATTATAT-TCGGG
* * *
85637522 TTAAAGTCCCGTAGGCTTCGTGCTGGTGTTATGTTCGGG
1 TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
85637561 TT
1 TT
85637563 TTATACCTCG
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
38 30 0.47
39 11 0.17
40 23 0.36
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.36
Consensus pattern (38 bp):
TTAAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGG
Found at i:85641921 original size:42 final size:41
Alignment explanation
Indices: 85641808--85641963 Score: 161
Period size: 42 Copynumber: 3.7 Consensus size: 41
85641798 GTACTACACC
* * ** *
85641808 AATGCCATATCCCAGATATGGTTTTACATGGGATCTCGTAT
1 AATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
**
85641849 AGATGCCAGTAGACCA-ACTATGGTCTTACACGAAATCTCATAT
1 A-ATGCCA-TATCCCAGA-TATGGTCTTACACGAAATCTCATAT
**
85641892 CAATGCCATATCCCAGATATGGTCTTACACGAAGCCTCATAAT
1 -AATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-AT
* *
85641935 GATGCCATATCCCAGATATTGTCTTACAC
1 AATGCCATATCCCAGATATGGTCTTACAC
85641964 ATAGCCTCAG
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 60 0.62
43 34 0.35
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (41 bp):
AATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:85643309 original size:22 final size:21
Alignment explanation
Indices: 85643263--85643334 Score: 90
Period size: 22 Copynumber: 3.3 Consensus size: 21
85643253 CTGCAGCACC
* *
85643263 GGTGTGTCCTATGGTCACACG
1 GGTGTGTCCTTTGGACACACG
*
85643284 GGTGTGTCCTTTGGACAATACG
1 GGTGTGTCCTTTGGAC-ACACG
*
85643306 GGTGTGTCCCTTGGACCACACG
1 GGTGTGTCCTTTGGA-CACACG
85643328 GGTGTGT
1 GGTGTGT
85643335 GAGCCCTGGT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
21 14 0.32
22 29 0.66
23 1 0.02
ACGTcount: A:0.14, C:0.22, G:0.35, T:0.29
Consensus pattern (21 bp):
GGTGTGTCCTTTGGACACACG
Found at i:85646422 original size:42 final size:42
Alignment explanation
Indices: 85646361--85646479 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
85646351 AGATGCCAAC
* ** * * *
85646361 GCCATCTCCTAGACGTGGTCTTACATGGGATCTCACATCGAT
1 GCCATATCCTAGATATGGTCTTATATGAGATCTCACATCAAT
* * *
85646403 GCCATATCCTAGATATGGTCTTATACGAAATCTCATATCAAT
1 GCCATATCCTAGATATGGTCTTATATGAGATCTCACATCAAT
* * *
85646445 GCCATATCCGATATATCGTCTTATATGAGATCTCA
1 GCCATATCCTAGATATGGTCTTATATGAGATCTCA
85646480 TGAACCCAAT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
GCCATATCCTAGATATGGTCTTATATGAGATCTCACATCAAT
Found at i:85652596 original size:50 final size:52
Alignment explanation
Indices: 85652540--85652654 Score: 155
Period size: 50 Copynumber: 2.2 Consensus size: 52
85652530 TAAATTTATT
* *
85652540 CATTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATGACATG
1 CATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAAATAAGACATG
* *
85652590 CTTTATGTAA-TCCTCATGTTAGTTAAAGTTTGCATCATTAAAATAAGTCATG
1 CATTATGTAACT-CTCATGTTAGTTAAAGTTTGCATCATTAAAATAAGACATG
*
85652642 CATTAAGTAACTC
1 CATTATGTAACTC
85652655 ATTTGTTCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
49 1 0.02
50 21 0.38
51 12 0.22
52 20 0.36
53 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (52 bp):
CATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAAATAAGACATG
Found at i:85654996 original size:17 final size:16
Alignment explanation
Indices: 85654976--85655015 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
85654966 AAAGGAAATA
85654976 AAAAGAGAGTGTATGAG
1 AAAAGAGAGT-TATGAG
*
85654993 AAAAGA-AGTTGTGAG
1 AAAAGAGAGTTATGAG
85655008 AAAAGAGA
1 AAAAGAGA
85655016 ATGAAAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.15
Consensus pattern (16 bp):
AAAAGAGAGTTATGAG
Found at i:85657136 original size:96 final size:96
Alignment explanation
Indices: 85656953--85657142 Score: 217
Period size: 96 Copynumber: 2.0 Consensus size: 96
85656943 TTCTTTTTAC
*
85656953 TCCTTTTAGCCCTCTTAGCTTCGACTTTTCCCTTGATCAAACCAAGCTTCTTGGGCTCCTTGTTC
1 TCCTTTTAGCCCTCTTAGCTTCGACTTTTCCCTTGATCAAACCAAGCTTCTTGGGCTCCATGTTC
* * ** *
85657018 GCTCCATCGTTCCCTTCGATGACAGACTTGG
66 ACTCCATAGTTCCCACCAATGACAGACTTGG
* * *
85657049 TCCTATTT-GCCCTCTTGGCTTC-AGCTTTTCCCTT-ACTCGAACCAAGCTTTTTGGGCTCCATG
1 TCCT-TTTAGCCCTCTTAGCTTCGA-CTTTTCCCTTGA-TCAAACCAAGCTTCTTGGGCTCCATG
* *
85657111 -TCTACTCTATAGTTTCCACCAATGACAGACTT
63 TTC-ACTCCATAGTTCCCACCAATGACAGACTT
85657143 CCTCGGACAC
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
95 4 0.05
96 72 0.91
97 3 0.04
ACGTcount: A:0.16, C:0.32, G:0.15, T:0.37
Consensus pattern (96 bp):
TCCTTTTAGCCCTCTTAGCTTCGACTTTTCCCTTGATCAAACCAAGCTTCTTGGGCTCCATGTTC
ACTCCATAGTTCCCACCAATGACAGACTTGG
Found at i:85663056 original size:40 final size:39
Alignment explanation
Indices: 85663011--85663218 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
85663001 CGGAATACAA
*
85663011 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85663051 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85663091 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
85663131 CCGGATGTAGTCACTAGCACAATTACCTTCAGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85663171 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85663211 CCGGATAT
1 CCGGATAT
85663219 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85663151 original size:80 final size:81
Alignment explanation
Indices: 85663011--85663216 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 81
85663001 CGGAATACAA
* * *
85663011 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
* * *
85663075 GCCTTCGGGTATTAGC
66 ACCTTCAGGTATTAAC
* * *
85663091 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
85663154 TACCTTCAGGTCTTAAC
65 TACCTTCAGGTATTAAC
** * ** * *
85663171 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85663217 ATCATTCAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 102 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
ACCTTCAGGTATTAAC
Found at i:85666800 original size:179 final size:179
Alignment explanation
Indices: 85666489--85666838 Score: 610
Period size: 179 Copynumber: 2.0 Consensus size: 179
85666479 GTGCCTAGCG
* *
85666489 TTGTTTGCTTCTCTCCTGCCCATGTTAAGGTAGTACGCCCGTATATTGTTATCCACGGCTTAATG
1 TTGTTCGCTTCTCTCCCGCCCATGTTAAGGTAGTACGCCCGTATATTGTTATCCACGGCTTAATG
* * * *
85666554 GCACGGGCGTGTCTCACGCCCGTGTCGAAGAAACAGAATCAGGCCTTGTCGCTGGCACGCTCGTG
66 GCACGGGCGTGACACACGCCCGTGTCGAAGAAAAAGAATCAGGCCTTGTCGCTGGCACGCCCGTG
85666619 GGTTTCCATTCCCACGCCCGTGTACATATCAAGTTAACCCAAGGCCACA
131 GGTTTCCATTCCCACGCCCGTGTACATATCAAGTTAACCCAAGGCCACA
*
85666668 TTGTTCGCTTCTCTCCCGCCCATGTTAAGGTAGTACGCCCGTGTATTGTTATCCACGGCTTAATG
1 TTGTTCGCTTCTCTCCCGCCCATGTTAAGGTAGTACGCCCGTATATTGTTATCCACGGCTTAATG
* * *
85666733 GCACGGGCGTGAGACACGCCCGTGTTGAAGAAAAAGAATCGGGCCTTGTCGCTGGCACGCCCGTG
66 GCACGGGCGTGACACACGCCCGTGTCGAAGAAAAAGAATCAGGCCTTGTCGCTGGCACGCCCGTG
85666798 GGTTTCCATTCCCACGCCCGTGTACATATCAAGTTAACCCA
131 GGTTTCCATTCCCACGCCCGTGTACATATCAAGTTAACCCA
85666839 CAGCCATGTC
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
179 161 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (179 bp):
TTGTTCGCTTCTCTCCCGCCCATGTTAAGGTAGTACGCCCGTATATTGTTATCCACGGCTTAATG
GCACGGGCGTGACACACGCCCGTGTCGAAGAAAAAGAATCAGGCCTTGTCGCTGGCACGCCCGTG
GGTTTCCATTCCCACGCCCGTGTACATATCAAGTTAACCCAAGGCCACA
Found at i:85669350 original size:534 final size:533
Alignment explanation
Indices: 85668343--85669387 Score: 1725
Period size: 534 Copynumber: 2.0 Consensus size: 533
85668333 TTCTGGCTCG
* *
85668343 GGTGCAATGAGTCCGTCCTTATTTTGAGTGCTAATTACATTGAGGTGTTCCCTTAGATTAGGTTC
1 GGTGCAATGAGTCCGTCCTTATCTTGAGTGCTAATTACATTGAGGTGTTCCCTCAGATTAGGTTC
* *
85668408 AGTATTACTTGGTAAGTTACCTTATGGTCGTTCAGAGATTAGTTTGGATAGCTAGCCTATCTGAG
66 AGTATTACTTGGTAAGCTACCTTATGGTCGTTCAGAGATTAGTTTGGACAGCTAGCCTATCTGAG
* *
85668473 TTTCGAGTTCTTGGATTGATGCTTGTTGATTCTTAAGTGCTGTCTCGGTATTTTGAAAAGGGTTT
131 TTTCGAGTCCTTGGATTGATGCTTGTTGATTCTTAAGTGCTGTCTCGGTATTTTGAAAAGAGTTT
*
85668538 CTGACACCGAGATGAATTTAGAAAGCATCTCTTCAAGGTTTGGTTTCTTCTCTTGTTGATAAGGT
196 CTGACACCGAGATGAATTTAGAAAGCATCTCTTCAAGGTTCGGTTTCTTCTCTTGTTGATAAGGT
* *
85668603 GGTTGTTGAAAACCCTGAGGATTTTATGGCTTTTGATTCCCTTGACCACCCTAGGAGAAATTTGG
261 GGCTGTTGAAAACCCTGAGAATTTTATGGCTTTTGATTCCCTTGACCACCCTAGGAGAAATTTGG
* * * *
85668668 GTGGTTCCTCTAACCTGCATTATAGGTATTACTATATGGGTTATTTTGAGATCGGAAGTTATTGT
326 GTGGTTCCTCCAACCTGCATTATAAGTATTACTATATGGGTTATTTTGAGATCGAAAGTTATTAT
* *
85668733 TACCCATATAGTTGACTTGTTCTTCTTCAGTTGGAGGATTGAAGGATTGGTATTCTGTATGCACC
391 TACCCATATAGTTGACTTGTTCTTCTTCAGTTGGAGGATTGAAAGATTGGTATTCTGTATGCACA
* * *
85668798 CCTCCGCCACTTGAGTCACACCTCATTACTGGATGTACCTGCGTAGAACCAAGTAAGCCGTCAAT
456 CCTACGCCACTTGAGTCACACCACATTACTGGATGTACCTACGTAGAACCAAGTAAGCCGTCAAT
85668863 GAATCCCAGTTCA
521 GAATCCCAGTTCA
* *
85668876 GGTGCAATG-GATCCTTCCTTATCTTGAGTGCTAATTGCATTGAGGTGTTCCCTCAGATTAGGTT
1 GGTGCAATGAG-TCCGTCCTTATCTTGAGTGCTAATTACATTGAGGTGTTCCCTCAGATTAGGTT
* * * *
85668940 TATTATTACTTGGTAGGCTACCTTGTGGTCGTTCAGAGATTAGTTTGGACAGCTAGCCTATCTGA
65 CAGTATTACTTGGTAAGCTACCTTATGGTCGTTCAGAGATTAGTTTGGACAGCTAGCCTATCTGA
* * *
85669005 GTTTCTAGTCCTTGGATTGATGCTTTTTGATTCTTAAGTGCTGTCTCGGTATTTTGGAAATGAGT
130 GTTTCGAGTCCTTGGATTGATGCTTGTTGATTCTTAAGTGCTGTCTCGGTATTTT-GAAAAGAGT
85669070 TTCTGACACCGAGATGAATTTAGAAAGCATCTCTTCAAGGTTCGGTTTCTTCTCTTGTTGATAAG
194 TTCTGACACCGAGATGAATTTAGAAAGCATCTCTTCAAGGTTCGGTTTCTTCTCTTGTTGATAAG
*
85669135 GTGGCTGTTGAAAACCTTGAGAATTTTATGGCTTTTGATTCCCTTGACCAGCCC-AGGAGAAATT
259 GTGGCTGTTGAAAACCCTGAGAATTTTATGGCTTTTGATTCCCTTGACCA-CCCTAGGAGAAATT
* * *
85669199 TGGGTGGTTCCTCCAACCTGCATTATAAGTATTACTGTATGGGTTATTTTGAGATCTAAATTTAT
323 TGGGTGGTTCCTCCAACCTGCATTATAAGTATTACTATATGGGTTATTTTGAGATCGAAAGTTAT
*
85669264 TATTACCCATATAGTTGACTTGTTCTTCTTCAGTTGTAGGATTGAAAGATTGGTATTCTGTATGC
388 TATTACCCATATAGTTGACTTGTTCTTCTTCAGTTGGAGGATTGAAAGATTGGTATTCTGTATGC
* * * *
85669329 ACACCTACTCCGCTTGAGTCACACCACATTACTGGATGTACCTATGTAGAGCCAAGTAA
453 ACACCTACGCCACTTGAGTCACACCACATTACTGGATGTACCTACGTAGAACCAAGTAA
85669388 ACCATTAATC
Statistics
Matches: 473, Mismatches: 36, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
532 1 0.00
533 169 0.36
534 300 0.63
535 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (533 bp):
GGTGCAATGAGTCCGTCCTTATCTTGAGTGCTAATTACATTGAGGTGTTCCCTCAGATTAGGTTC
AGTATTACTTGGTAAGCTACCTTATGGTCGTTCAGAGATTAGTTTGGACAGCTAGCCTATCTGAG
TTTCGAGTCCTTGGATTGATGCTTGTTGATTCTTAAGTGCTGTCTCGGTATTTTGAAAAGAGTTT
CTGACACCGAGATGAATTTAGAAAGCATCTCTTCAAGGTTCGGTTTCTTCTCTTGTTGATAAGGT
GGCTGTTGAAAACCCTGAGAATTTTATGGCTTTTGATTCCCTTGACCACCCTAGGAGAAATTTGG
GTGGTTCCTCCAACCTGCATTATAAGTATTACTATATGGGTTATTTTGAGATCGAAAGTTATTAT
TACCCATATAGTTGACTTGTTCTTCTTCAGTTGGAGGATTGAAAGATTGGTATTCTGTATGCACA
CCTACGCCACTTGAGTCACACCACATTACTGGATGTACCTACGTAGAACCAAGTAAGCCGTCAAT
GAATCCCAGTTCA
Found at i:85675371 original size:21 final size:20
Alignment explanation
Indices: 85675347--85675385 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
85675337 GGATCAATTT
85675347 GAAACAAAATAGAAAATTTGG
1 GAAA-AAAATAGAAAATTTGG
* *
85675368 GAAAAAACTTGAAAATTT
1 GAAAAAAATAGAAAATTT
85675386 TAGAATTAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.56, C:0.05, G:0.15, T:0.23
Consensus pattern (20 bp):
GAAAAAAATAGAAAATTTGG
Found at i:85676368 original size:24 final size:24
Alignment explanation
Indices: 85676336--85676382 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
85676326 CACTACACGG
* *
85676336 GCGTGTGGTGGCCCGTGTGGTAGT
1 GCGTATGGTCGCCCGTGTGGTAGT
85676360 GCGTATGGTCGCCCGTGTGGTAG
1 GCGTATGGTCGCCCGTGTGGTAG
85676383 GCCGCGTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.06, C:0.19, G:0.47, T:0.28
Consensus pattern (24 bp):
GCGTATGGTCGCCCGTGTGGTAGT
Found at i:85683671 original size:30 final size:31
Alignment explanation
Indices: 85683628--85683703 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
85683618 GGCTGTGTGA
*
85683628 CACAC-GGAGTGTGGGCCCACA-CGATAAAC
1 CACACGGGCGTGTGGGCCCACATCGATAAAC
* * * *
85683657 CACATGGGCTTGTGGGCCCACATGGGTAAAC
1 CACACGGGCGTGTGGGCCCACATCGATAAAC
85683688 CACACGGGCGTGTGGG
1 CACACGGGCGTGTGGG
85683704 ATTCTGGGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
29 4 0.11
30 14 0.37
31 20 0.53
ACGTcount: A:0.24, C:0.28, G:0.34, T:0.14
Consensus pattern (31 bp):
CACACGGGCGTGTGGGCCCACATCGATAAAC
Found at i:85683773 original size:16 final size:17
Alignment explanation
Indices: 85683752--85683784 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
85683742 ATTTGGGCCA
85683752 TGTGGG-CACACGGGCG
1 TGTGGGCCACACGGGCG
85683768 TGTGGGCCCACACGGGC
1 TGTGGG-CCACACGGGC
85683785 AGACAACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.30, G:0.45, T:0.12
Consensus pattern (17 bp):
TGTGGGCCACACGGGCG
Found at i:85686420 original size:20 final size:20
Alignment explanation
Indices: 85686397--85686436 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
85686387 AATTGTAGAT
85686397 AGAGGCA-CAAATGTGCAATC
1 AGAGGCATCAAA-GTGCAATC
*
85686417 AGAGGCATCGAAGTGCAATC
1 AGAGGCATCAAAGTGCAATC
85686437 CCATACAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.38, C:0.20, G:0.28, T:0.15
Consensus pattern (20 bp):
AGAGGCATCAAAGTGCAATC
Found at i:85687968 original size:15 final size:15
Alignment explanation
Indices: 85687948--85687977 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85687938 AGATTTGTGG
85687948 TTTCGAAACCACTAT
1 TTTCGAAACCACTAT
*
85687963 TTTCGACACCACTAT
1 TTTCGAAACCACTAT
85687978 AATCAGGCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (15 bp):
TTTCGAAACCACTAT
Found at i:85688950 original size:8 final size:8
Alignment explanation
Indices: 85688936--85688971 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
85688926 AATTGGATTG
85688936 AATTTTTT
1 AATTTTTT
*
85688944 GATTTTTT
1 AATTTTTT
85688952 AATTTTTTT
1 AA-TTTTTT
85688961 AATTTTTT
1 AATTTTTT
85688969 AAT
1 AAT
85688972 AATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (8 bp):
AATTTTTT
Found at i:85688960 original size:17 final size:17
Alignment explanation
Indices: 85688938--85688971 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85688928 TTGGATTGAA
*
85688938 TTTTTTGATTTTTTAAT
1 TTTTTTAATTTTTTAAT
85688955 TTTTTTAATTTTTTAAT
1 TTTTTTAATTTTTTAAT
85688972 AATTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTTAATTTTTTAAT
Found at i:85693998 original size:31 final size:31
Alignment explanation
Indices: 85693961--85694029 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
85693951 CTAACAAACT
85693961 CTAACAAACTCAACTTCCTACTACTAACAAG
1 CTAACAAACTCAACTTCCTACTACTAACAAG
* * *
85693992 CTAACAAACTTAGCTTCCTACTACTAACCAG
1 CTAACAAACTCAACTTCCTACTACTAACAAG
85694023 CTAACAA
1 CTAACAA
85694030 TCTCCTGGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.41, C:0.32, G:0.04, T:0.23
Consensus pattern (31 bp):
CTAACAAACTCAACTTCCTACTACTAACAAG
Found at i:85711592 original size:40 final size:40
Alignment explanation
Indices: 85711547--85711673 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
85711537 CTGGAAATTA
* * *
85711547 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATAC
* *
85711588 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATAC
*
85711627 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGA-TAC
85711667 TATCCGG
1 TATCCGG
85711674 TTATATTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
39 6 0.08
40 64 0.88
41 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATAC
Found at i:85719598 original size:40 final size:40
Alignment explanation
Indices: 85719513--85719663 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
85719503 AATTGAATGA
* * *
85719513 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
85719553 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
85719594 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
85719633 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
85719664 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:85719677 original size:40 final size:40
Alignment explanation
Indices: 85719549--85719679 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
85719539 TATGCTGGAA
* * *
85719549 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
85719589 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
85719629 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
85719669 ATTATATCCGG
1 ATTATATCCGG
85719680 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:85735705 original size:24 final size:24
Alignment explanation
Indices: 85735677--85735727 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
85735667 TAACAAAAGC
*
85735677 AAAAATAG-AAACAACAATCAAAAT
1 AAAAAT-GCAAACAACAATAAAAAT
*
85735701 AAAAATGCTAACAACAATAAAAAT
1 AAAAATGCAAACAACAATAAAAAT
85735725 AAA
1 AAA
85735728 TAAAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.71, C:0.12, G:0.04, T:0.14
Consensus pattern (24 bp):
AAAAATGCAAACAACAATAAAAAT
Found at i:85735740 original size:27 final size:24
Alignment explanation
Indices: 85735677--85735741 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
85735667 TAACAAAAGC
*
85735677 AAAAAT-AGAAACAACAATCAAAAT
1 AAAAATGA-AAACAACAATAAAAAT
**
85735701 AAAAATGCTAACAACAATAAAAAT
1 AAAAATGAAAACAACAATAAAAAT
85735725 AAATAAAGTGAAAACAA
1 -AA-AAA-TGAAAACAA
85735742 TAAAAACAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
24 20 0.62
25 2 0.06
26 3 0.09
27 7 0.22
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (24 bp):
AAAAATGAAAACAACAATAAAAAT
Found at i:85744102 original size:47 final size:48
Alignment explanation
Indices: 85744040--85744238 Score: 190
Period size: 47 Copynumber: 4.2 Consensus size: 48
85744030 AGGCAACATG
* *
85744040 TGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 TGATATGTG-CTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGT
* * ** * *
85744089 TG-TATGAGCTTCCGTATAAGACAATATTTTGGATATGGCATCGGT-A
1 TGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGT
* * * *
85744135 TGATATGTGCTTCTGTGTAAGACCATATCTGGGATATGGCATCAGTG-
1 TGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGT
* * * * * *
85744182 TGATATGTG-ATCTGTGTAAGACCATGGCTGGGCTATGGCTTCGGTGT
1 TGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGT
85744229 GTGATATGTG
1 -TGATATGTG
85744239 ACTATGTGCA
Statistics
Matches: 125, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
46 33 0.26
47 76 0.61
48 14 0.11
49 2 0.02
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (48 bp):
TGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGGTGT
Found at i:85760867 original size:46 final size:46
Alignment explanation
Indices: 85760720--85760895 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
85760710 TTTGTTTTGT
* * * * * *
85760720 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATACATCGGCCTCGA-GACGA
* * * ** *
85760766 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTAGGACAT-ACATCGGCCTCGAGACGA
*
85760814 GAGCCAGTGTACGACATGTCTAGGACATACATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTAGGACATACATCGGCCTCGAGACG-A
* *
85760861 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTAGGACATACATCGGC
85760896 TATGAGATGA
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 57 0.53
47 28 0.26
48 22 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTAGGACATACATCGGCCTCGAGACGA
Found at i:85760914 original size:46 final size:48
Alignment explanation
Indices: 85760725--85760987 Score: 235
Period size: 47 Copynumber: 5.6 Consensus size: 48
85760715 TTTGTGAGCT
* * * *
85760725 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGA-GATGATAGCC
* * *
85760771 AGTGTAAGACCATGTCTGGGACATGGCATCAG-TATTGAGACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGATGATAGCC
* * * * *
85760819 AGTGTACGA-CATGTCTAGGACAT-ACATCGGCCT-CGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATGAGATGAT-AGCC
*
85760865 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGATAGCC
* * * *
85760911 AGTGTAAAACCATGTTTGGGACATGGCATCGACT-TGAGAT-ATGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGAT-AGCC
*
85760958 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
85760988 AGCACCTTAC
Statistics
Matches: 180, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 69 0.38
47 77 0.43
48 31 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGATAGCC
Found at i:85760977 original size:140 final size:140
Alignment explanation
Indices: 85760725--85760981 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
85760715 TTTGTGAGCT
* *
85760725 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAAACCATGTCTGG
*
85760790 GACATGGCATCAGTATTGAGACGAGAGCCAGTGTACGACATGTCTAGGACATACATCGGCCTCGA
66 GACATGGCATCAGTATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATACATCGGCCTCGA
85760855 GACGTAAGCC
131 GACGTAAGCC
* * * * *
85760865 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTCAGTGTAAAACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATGATGAGAGCCAGTGTAAAACCATGTCTG
* *
85760929 GGACATGGCATC-G-ACTTGAGA-TATGAGCTAGTGTAAGACCATGTCTAGGACAT
65 GGACATGGCATCAGTA-TTGAGACGA-GAGCCAGTGTAAGA-CATGTCTAGGACAT
85760982 GGCATCAGCA
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 2 0.02
139 19 0.18
140 81 0.79
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAAACCATGTCTGG
GACATGGCATCAGTATTGAGACGAGAGCCAGTGTAAGACATGTCTAGGACATACATCGGCCTCGA
GACGTAAGCC
Found at i:85762078 original size:20 final size:21
Alignment explanation
Indices: 85762037--85762078 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
85762027 TTGAAATTAA
**
85762037 TTCTACACGGTTGTGTTGCCC
1 TTCTACACGGTCATGTTGCCC
85762058 TTCTACACGGTCATG-TGCCC
1 TTCTACACGGTCATGTTGCCC
85762078 T
1 T
85762079 GTTTTAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (21 bp):
TTCTACACGGTCATGTTGCCC
Found at i:85769780 original size:15 final size:15
Alignment explanation
Indices: 85769760--85769802 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
85769750 TGCTGTAAAT
*
85769760 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
*
85769775 TGGATTTCTTTATCT
1 TGGATTTCTTTATCA
85769790 TGGATTTCTTTAT
1 TGGATTTCTTTAT
85769803 TCTGGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:85778201 original size:46 final size:46
Alignment explanation
Indices: 85778130--85778399 Score: 165
Period size: 47 Copynumber: 5.8 Consensus size: 46
85778120 TTTGTTTTGT
* *
85778130 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAATATA
* * ** *
85778175 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-TATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA-CAATAT-A
* * * *
85778223 TAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-A-ATATA
* * ** *
85778270 -AGCCAGTGTAAGACATGTTTGGGACAT-GCATCAGCTGCAAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAATAT-A
* * * * * * * ***
85778315 TAGTCAATGTAAGACCATGTTTGGGACATCGTATCGACTTGAGATAT-
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACA-ATATA
* *
85778362 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
85778400 ACCTTACCCA
Statistics
Matches: 175, Mismatches: 38, Indels: 22
0.74 0.16 0.09
Matches are distributed among these distances:
44 3 0.02
45 15 0.09
46 65 0.37
47 66 0.38
48 23 0.13
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAATATA
Found at i:85778250 original size:47 final size:45
Alignment explanation
Indices: 85778131--85778398 Score: 197
Period size: 46 Copynumber: 5.8 Consensus size: 45
85778121 TTGTTTTGTG
**** * *
85778131 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATAG
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGATTGA-GATAT
* *
85778176 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGTATTGAGATGAT
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG-ATTGAGAT-AT
* * *
85778224 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-ATTGAGATAT
* * * *
85778269 AAGCCAGTGTAAGA-CATGTTTGGGACATGCATCAG-CTGCAAGATGAT
1 -AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGATTG--AGAT-AT
* * *
85778316 AG-TCAATGTAAGACCATGTTTGGGACATCGTATC-GACTTGAGATAT
1 AGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGA-TTGAGATAT
*
85778362 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 -AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGG
85778399 CACCTTACCC
Statistics
Matches: 178, Mismatches: 29, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 14 0.08
46 71 0.40
47 70 0.39
48 20 0.11
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGATTGAGATAT
Found at i:85778334 original size:93 final size:93
Alignment explanation
Indices: 85778131--85778396 Score: 276
Period size: 93 Copynumber: 2.9 Consensus size: 93
85778121 TTGTTTTGTG
* * *
85778131 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATAGAGCCAGTGTAAGACCATG
1 AGCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AGCCAGTGTAAGACCATG
** *
85778194 TCTGGGACATGGCATTGGTATTGAGATGAT
65 TCTGGGACATGGCATCAG-ACTGAGATGAT
* *
85778224 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGA-CATGT
1 AGCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCAGTGTAAGACCATGT
*
85778288 TTGGGACAT-GCATCAG-CTGCAAGATGAT
66 CTGGGACATGGCATCAGACTG--AGATGAT
* * * * * *
85778316 AG-TCAATGTAAGACCATGTTTGGGACATCGTATC-GACTTGAGATATGAGCTAGTGTAAGACCA
1 AGCT-AATGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATATAAGCCAGTGTAAGACCA
*
85778379 TGTCTAGGACATGGCATC
63 TGTCTGGGACATGGCATC
85778397 GGCACCTTAC
Statistics
Matches: 147, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
90 2 0.01
91 1 0.01
92 22 0.15
93 84 0.57
94 30 0.20
95 8 0.05
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (93 bp):
AGCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCAGACTGAGATGAT
Found at i:85781356 original size:161 final size:161
Alignment explanation
Indices: 85781183--85781501 Score: 530
Period size: 161 Copynumber: 2.0 Consensus size: 161
85781173 TGTCTAGATG
* * *
85781183 TTCCCTTAGGGACATCAATCCTAGGTTTTTAGGTTCATTCAAATTAATCCAATTTATTAAGATTT
1 TTCCCTTAGGGACATCAACCCTAAGATTTTAGGTTCATTCAAATTAATCCAATTTATTAAGATTT
** * * *
85781248 AGTCCTTCATCCAAAAATTGACTCACCACATTTTCATCAATCAACCCCCTTAAAGGTTTAGCTAC
66 AGTCCTTCATCCAAAAATCAACTCACCACATTTCCATCAACCAACCCCCTTAAAGATTTAGCTAC
*
85781313 TCATGCTGAAAATACAACTAAAAACCATGGA
131 TCATGCTAAAAATACAACTAAAAACCATGGA
85781344 TTCCCTTAGGGACATCAACCCTAAGATTTTAGGTTCATTCAAATTAATCCAATTTATTAAGATTT
1 TTCCCTTAGGGACATCAACCCTAAGATTTTAGGTTCATTCAAATTAATCCAATTTATTAAGATTT
* *
85781409 AGTCCTTCATCCAAAAATCAACTCACCACATTTCCATCAACCAACCCCCTTAACGATTTAGCTGC
66 AGTCCTTCATCCAAAAATCAACTCACCACATTTCCATCAACCAACCCCCTTAAAGATTTAGCTAC
*
85781474 TCATGCTAAAAATACAACTAACAACCAT
131 TCATGCTAAAAATACAACTAAAAACCAT
85781502 AGAAATGAAA
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
161 146 1.00
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (161 bp):
TTCCCTTAGGGACATCAACCCTAAGATTTTAGGTTCATTCAAATTAATCCAATTTATTAAGATTT
AGTCCTTCATCCAAAAATCAACTCACCACATTTCCATCAACCAACCCCCTTAAAGATTTAGCTAC
TCATGCTAAAAATACAACTAAAAACCATGGA
Found at i:85783864 original size:13 final size:15
Alignment explanation
Indices: 85783846--85783878 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
85783836 GCTTAAATAT
85783846 ATTTAATTT-ATT-A
1 ATTTAATTTAATTCA
85783859 ATTTAATTTAATTCA
1 ATTTAATTTAATTCA
85783874 ATTTA
1 ATTTA
85783879 TTTTCCAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTAATTTAATTCA
Found at i:85785133 original size:114 final size:114
Alignment explanation
Indices: 85784979--85785198 Score: 368
Period size: 114 Copynumber: 1.9 Consensus size: 114
85784969 CCAGGCCATA
* * * *
85784979 CGCACAAGACACGGCCATGTGATGGCCAGGCAGACCGTGTGTGATACATGGGCCGGATAGATTTT
1 CGCACAAGACACGACCATGTGATGGCCAGGCAGACCGTGTGTGATACATAGGCCGGACAGATTTG
85785044 GGCCGTGTGGGCCACACGGGCATGTGGGATTTTTGGCCAGGTAGCCGTG
66 GGCCGTGTGGGCCACACGGGCATGTGGGATTTTTGGCCAGGTAGCCGTG
* *
85785093 CGCACAAGACACTACCGTGTGATGGCCAGGCAGACCGTGTGTGATACATAGGCCGGACAGATTTG
1 CGCACAAGACACGACCATGTGATGGCCAGGCAGACCGTGTGTGATACATAGGCCGGACAGATTTG
* *
85785158 GGCCGTGTGGGCCACATGGGCATGTGGGATTTTTTGCCAGG
66 GGCCGTGTGGGCCACACGGGCATGTGGGATTTTTGGCCAGG
85785199 CTGTGTGATC
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 98 1.00
ACGTcount: A:0.20, C:0.23, G:0.36, T:0.21
Consensus pattern (114 bp):
CGCACAAGACACGACCATGTGATGGCCAGGCAGACCGTGTGTGATACATAGGCCGGACAGATTTG
GGCCGTGTGGGCCACACGGGCATGTGGGATTTTTGGCCAGGTAGCCGTG
Found at i:85785258 original size:13 final size:13
Alignment explanation
Indices: 85785240--85785265 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85785230 GGGCCGTGTC
85785240 GGCCACATGGGCA
1 GGCCACATGGGCA
85785253 GGCCACATGGGCA
1 GGCCACATGGGCA
85785266 TATGAGCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.38, T:0.08
Consensus pattern (13 bp):
GGCCACATGGGCA
Found at i:85786519 original size:25 final size:25
Alignment explanation
Indices: 85786473--85786521 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
85786463 TTATTTTTGA
* *
85786473 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
85786498 TAGTATATATTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
85786522 ATAAACTGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:85789691 original size:43 final size:43
Alignment explanation
Indices: 85789520--85789692 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 43
85789510 ACATAGGATT
* *
85789520 TCGATATGTG-TTATCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTA-CATGTAAGACCACATCTGGGACGTTGGCA
* * * ** *
85789563 CCAAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATT-TGA-TTACATGTAAGACCACATCTGGGACGTTGGCA
*** *
85789607 TCGCATA--TGATTTTGTGTAAGATCC-TATCTGGGACAG-TGGCA
1 TCG-ATATTTGATTACATGTAAGA-CCACATCTGGGAC-GTTGGCA
*
85789649 TCGATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCA
85789692 T
1 T
85789693 TGTATGAGCT
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
41 3 0.03
42 31 0.30
43 36 0.35
44 27 0.26
45 5 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCA
Found at i:85798488 original size:22 final size:22
Alignment explanation
Indices: 85798460--85798527 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 22
85798450 CATTGAATCC
85798460 TCTTATTTTTTTTATTATTTAT
1 TCTTATTTTTTTTATTATTTAT
*
85798482 TCTTATTTTTATT-TTATTTTAT
1 TCTTATTTTTTTTATTA-TTTAT
*
85798504 TTTTATTTTCTTTTGATT-TTTAT
1 TCTTATTTT-TTTT-ATTATTTAT
85798527 T
1 T
85798528 TTCATTTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 3 0.08
22 25 0.64
23 9 0.23
25 2 0.05
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (22 bp):
TCTTATTTTTTTTATTATTTAT
Found at i:85798489 original size:10 final size:10
Alignment explanation
Indices: 85798462--85798554 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 10
85798452 TTGAATCCTC
85798462 TTATTTT-TT
1 TTATTTTATT
85798471 TTATTATTTATT
1 TTA-T-TTTATT
85798483 CTTATTTTTATT
1 -TTA-TTTTATT
85798495 TTATTTTATTT
1 TTATTTTA-TT
*
85798506 TTATTTTCTT
1 TTATTTTATT
85798516 TTGATTTTTATT
1 TT-A-TTTTATT
*
85798528 TTCATTTCAATT
1 TT-ATTT-TATT
85798540 TTA--TTATT
1 TTATTTTATT
85798548 TTATTTT
1 TTATTTT
85798555 GAAAGACATA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
8 6 0.09
9 4 0.06
10 12 0.17
11 20 0.29
12 22 0.32
13 5 0.07
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (10 bp):
TTATTTTATT
Found at i:85798493 original size:6 final size:6
Alignment explanation
Indices: 85798468--85798534 Score: 68
Period size: 6 Copynumber: 11.5 Consensus size: 6
85798458 CCTCTTATTT
* *
85798468 TTTTTA TTATTTA TTCTTA TTTTTA -TTTTA -TTTTA TTTTTA -TTTTC
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
85798514 TTTTGA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTT
85798535 CAATTTTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 14 0.27
6 31 0.61
7 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:85798498 original size:5 final size:5
Alignment explanation
Indices: 85798462--85798554 Score: 66
Period size: 5 Copynumber: 17.4 Consensus size: 5
85798452 TTGAATCCTC
85798462 TTATT TT-TT TTATTAT TTATT CTTATTT TTATT TTATT TTATTT TTATT
1 TTATT TTATT TTA-T-T TTATT -TTA-TT TTATT TTATT TTA-TT TTATT
* *
85798511 TTCTT TTGATTT TTATT TTCATT TCAATT TTA-- TTATT TTATT TT
1 TTATT TT-A-TT TTATT TT-ATT T-TATT TTATT TTATT TTATT TT
85798555 GAAAGACATA
Statistics
Matches: 72, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 33 0.46
6 22 0.31
7 10 0.14
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:85798499 original size:17 final size:16
Alignment explanation
Indices: 85798462--85798554 Score: 93
Period size: 17 Copynumber: 5.8 Consensus size: 16
85798452 TTGAATCCTC
*
85798462 TTATTTTTTTTATTA-T
1 TTATTTTATTT-TTATT
85798478 TTATTCTTATTTTTATT
1 TTATT-TTATTTTTATT
85798495 TTATTTTATTTTTATT
1 TTATTTTATTTTTATT
*
85798511 TTCTTTTGATTTTTATT
1 TTATTTT-ATTTTTATT
* *
85798528 TTCATTTCAATTTTA--
1 TT-ATTTTATTTTTATT
85798543 TTATTTTATTTT
1 TTATTTTATTTT
85798555 GAAAGACATA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
14 8 0.12
15 2 0.03
16 25 0.38
17 28 0.42
18 3 0.05
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (16 bp):
TTATTTTATTTTTATT
Found at i:85801133 original size:21 final size:21
Alignment explanation
Indices: 85801093--85801133 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
85801083 GCTTTAATTA
***
85801093 AATTAGTTAATTAGTTTAAAT
1 AATTAGTTAATTAAAATAAAT
85801114 AATTAGTTAATTAAAATAAA
1 AATTAGTTAATTAAAATAAA
85801134 CCCTTTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (21 bp):
AATTAGTTAATTAAAATAAAT
Found at i:85806909 original size:27 final size:26
Alignment explanation
Indices: 85806875--85806941 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
85806865 ATTTAATTAC
85806875 ATAAATATTATT-TTATTAATATTTTA
1 ATAAATATT-TTATTATTAATATTTTA
* *
85806901 ATAAGATATTTTATTTTTATTATTTT-
1 ATAA-ATATTTTATTATTAATATTTTA
85806927 AT---TATTTTATTATTA
1 ATAAATATTTTATTATTA
85806942 TATAAAGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 12 0.33
26 8 0.22
27 16 0.44
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (26 bp):
ATAAATATTTTATTATTAATATTTTA
Found at i:85806928 original size:8 final size:8
Alignment explanation
Indices: 85806907--85806940 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
85806897 TTTAATAAGA
85806907 TATTTTA-
1 TATTTTAT
85806914 T-TTTTAT
1 TATTTTAT
85806921 TATTTTAT
1 TATTTTAT
85806929 TATTTTAT
1 TATTTTAT
85806937 TATT
1 TATT
85806941 ATATAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 5 0.20
7 2 0.08
8 18 0.72
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:85806939 original size:11 final size:11
Alignment explanation
Indices: 85806880--85806942 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
85806870 ATTACATAAA
85806880 TATTATTTTAT
1 TATTATTTTAT
*
85806891 TAATATTTTAAT
1 TATTATTTT-AT
* *
85806903 AAGATATTTTAT
1 TA-TTATTTTAT
*
85806915 TTTTATTATT-T
1 TATTATT-TTAT
85806926 TATTATTTTAT
1 TATTATTTTAT
85806937 TATTAT
1 TATTAT
85806943 ATAAAGAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 2 0.05
11 26 0.62
12 7 0.17
13 7 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:85808796 original size:46 final size:46
Alignment explanation
Indices: 85808744--85809230 Score: 769
Period size: 46 Copynumber: 10.6 Consensus size: 46
85808734 TCTCTGTTAT
85808744 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
85808790 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
*
85808836 GAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
85808882 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
*
85808928 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGGTAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
* *
85808974 GAAATGTGTAAGACCATGGTTGAAAGTTACCATGGCAACCTGGTAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
*
85809020 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
* * *
85809066 GAAATGTGTAAGACCATGATTGAAAGATACCATGGCAACCTAATAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
** ** *
85809112 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
** * * **
85809158 GAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGGCA-
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
* *
85809203 GAAAATGAGTAAGACCATAGTTGAAAGA
1 G-AAATGTGTAAGACCATGGTTGAAAGA
85809231 CATTATGGCA
Statistics
Matches: 417, Mismatches: 23, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
45 1 0.00
46 416 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAC
Found at i:85809546 original size:16 final size:17
Alignment explanation
Indices: 85809525--85809557 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85809515 ATGATAGAGC
85809525 ATGAAA-CATTGATATA
1 ATGAAATCATTGATATA
*
85809541 ATGAAATGATTGATATA
1 ATGAAATCATTGATATA
85809558 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.15, T:0.33
Consensus pattern (17 bp):
ATGAAATCATTGATATA
Found at i:85816583 original size:2 final size:2
Alignment explanation
Indices: 85816571--85816605 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
85816561 TTTATGGCCG
*
85816571 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85816606 TATCAAAGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:85821719 original size:15 final size:15
Alignment explanation
Indices: 85821696--85821725 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85821686 AAACATACAT
*
85821696 CCAGGACCAAACCGA
1 CCAGAACCAAACCGA
85821711 CCAGAACCAAACCGA
1 CCAGAACCAAACCGA
85821726 TCTACCCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.40, G:0.17, T:0.00
Consensus pattern (15 bp):
CCAGAACCAAACCGA
Found at i:85822060 original size:145 final size:145
Alignment explanation
Indices: 85821797--85822060 Score: 456
Period size: 145 Copynumber: 1.8 Consensus size: 145
85821787 TAACCCTTCG
* * * *
85821797 CTTTCTTATTTATTCTTTTATTATTACACATTGAAGGTAACGTGGGTTAAGTAGGGGGTGTTGGA
1 CTTTCTTATTTATTCTTTTATTATTACACATTGAAGGCAACGTAGGTTAAGTAGGGCGTGTTGAA
85821862 TTAGTAAATATGCATGATTGTTTCTCTTTCACATTTGTTAATTCTTATGCTAGGACAAGGAGAGT
66 TTAGTAAATATGCATGATTGTTTCTCTTTCACATTTGTTAATTCTTATGCTAGGACAAGGAGAGT
85821927 ATACTTGACTATTCT
131 ATACTTGACTATTCT
* * *
85821942 CTTTCTTATTTATTCTTTTATTATTACATATTGAGGGCAATGTAGGTTAAGTAGGGCGTGTTGAA
1 CTTTCTTATTTATTCTTTTATTATTACACATTGAAGGCAACGTAGGTTAAGTAGGGCGTGTTGAA
*
85822007 TTAGTAAGTATGCATGATTGTTTCTCTTTCACATTTGTTAATTCTTATGCTAGG
66 TTAGTAAATATGCATGATTGTTTCTCTTTCACATTTGTTAATTCTTATGCTAGG
85822061 TTTATTCGTT
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
145 111 1.00
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (145 bp):
CTTTCTTATTTATTCTTTTATTATTACACATTGAAGGCAACGTAGGTTAAGTAGGGCGTGTTGAA
TTAGTAAATATGCATGATTGTTTCTCTTTCACATTTGTTAATTCTTATGCTAGGACAAGGAGAGT
ATACTTGACTATTCT
Found at i:85823849 original size:6 final size:6
Alignment explanation
Indices: 85823831--85823866 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
85823821 CACCGATCTT
* *
85823831 CCCTTC CCATTC CCCTTC CCCTTC CACTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
85823867 TCCCATCCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.06, C:0.61, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTTC
Found at i:85826439 original size:18 final size:18
Alignment explanation
Indices: 85826369--85826446 Score: 66
Period size: 18 Copynumber: 4.0 Consensus size: 18
85826359 CAATTAAACC
*
85826369 ATTTGATTGATATATTTA
1 ATTTGATTTATATATTTA
*
85826387 ATTTGATTTATTTATTTA
1 ATTTGATTTATATATTTA
*
85826405 TACTTGAGTATTATTATATATTTA
1 -A-TT-TG-A-T-TTATATATTTA
*
85826429 ATTTGATTTATTTATTTA
1 ATTTGATTTATATATTTA
85826447 TAAATAAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
18 26 0.54
19 2 0.04
20 3 0.06
21 2 0.04
22 3 0.06
23 2 0.04
24 10 0.21
ACGTcount: A:0.31, C:0.01, G:0.08, T:0.60
Consensus pattern (18 bp):
ATTTGATTTATATATTTA
Found at i:85826527 original size:18 final size:18
Alignment explanation
Indices: 85826485--85826521 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
85826475 ACAATTTAAA
85826485 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
85826503 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
85826521 A
1 A
85826522 AGTAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:85826647 original size:20 final size:19
Alignment explanation
Indices: 85826603--85826648 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
85826593 CATCCAAACA
*
85826603 CCAGAAAAGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
* *
85826622 CTAGAAAATTAAATCATTTT
1 CCAGAAAAGTAAATCA-TTT
85826642 CCAGAAA
1 CCAGAAA
85826649 TTATTTTCTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:85826764 original size:6 final size:6
Alignment explanation
Indices: 85826753--85826790 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
85826743 ATATGATTTG
85826753 ATTTTT ATTTTT ATTGATTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATT--TTT ATTTTT ATTTTT ATTTTT
85826791 TCTTCTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 24 0.80
8 6 0.20
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:85826778 original size:20 final size:21
Alignment explanation
Indices: 85826746--85826787 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
85826736 TTCGTGGATA
85826746 TGATTTGATTTTTATTTTTAT
1 TGATTTGATTTTTATTTTTAT
85826767 TGATTT-ATTTTTATTTTTAT
1 TGATTTGATTTTTATTTTTAT
85826787 T
1 T
85826788 TTTTCTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (21 bp):
TGATTTGATTTTTATTTTTAT
Found at i:85827383 original size:17 final size:18
Alignment explanation
Indices: 85827361--85827415 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 18
85827351 ACACGGGCAT
*
85827361 GCCACACA-GGTATGTGG
1 GCCACACAGGGCATGTGG
85827378 GCCACA-AGGGCATGTGG
1 GCCACACAGGGCATGTGG
* *
85827395 GCC-CACATGAGCATATGG
1 GCCACACA-GGGCATGTGG
85827413 GCC
1 GCC
85827416 CAAAATTCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 3 0.09
17 18 0.56
18 11 0.34
ACGTcount: A:0.24, C:0.27, G:0.35, T:0.15
Consensus pattern (18 bp):
GCCACACAGGGCATGTGG
Found at i:85827408 original size:18 final size:18
Alignment explanation
Indices: 85827372--85827417 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
85827362 CCACACAGGT
*
85827372 ATGTGGG-CCACAAGGGC
1 ATGTGGGCCCACAAGAGC
*
85827389 ATGTGGGCCCACATGAGC
1 ATGTGGGCCCACAAGAGC
*
85827407 ATATGGGCCCA
1 ATGTGGGCCCA
85827418 AAATTCTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (18 bp):
ATGTGGGCCCACAAGAGC
Found at i:85830307 original size:40 final size:40
Alignment explanation
Indices: 85830252--85830461 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85830242 AACATTGGAA
85830252 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85830292 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85830332 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
85830372 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
85830411 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
85830452 CTATATCCGG
1 ATATATCCGG
85830462 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:85838441 original size:40 final size:40
Alignment explanation
Indices: 85838386--85838524 Score: 278
Period size: 40 Copynumber: 3.5 Consensus size: 40
85838376 AACATTGGAA
85838386 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85838426 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85838466 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85838506 ATATATCCGGGCTAAGACC
1 ATATATCCGGGCTAAGACC
85838525 GCGACGCTAA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:85840007 original size:40 final size:39
Alignment explanation
Indices: 85839952--85840045 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
85839942 GGGTGTTACA
*
85839952 GGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTTC
1 GGGTCTTAGCCCGGAT-GAA-GCACTAGCAC-AATTGCCTTC
*
85839992 GGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTC
1 GGGTCTTAGCCCGGATGAAG-CACTAGCACAATTGCCTTC
*
85840032 GGGTCTTAACCCGG
1 GGGTCTTAGCCCGG
85840046 TTATAATTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 1 0.02
39 4 0.08
40 43 0.90
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (39 bp):
GGGTCTTAGCCCGGATGAAGCACTAGCACAATTGCCTTC
Found at i:85847911 original size:80 final size:80
Alignment explanation
Indices: 85847827--85847975 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85847817 TATGGTAACC
* * * *
85847827 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85847891 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85847907 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85847972 CCGG
66 CCGG
85847976 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85847917 original size:40 final size:38
Alignment explanation
Indices: 85847868--85847975 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85847858 ATCACGATTT
*
85847868 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85847908 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85847948 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85847976 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85855968 original size:80 final size:80
Alignment explanation
Indices: 85855884--85856032 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85855874 TATGGTAACC
* * * *
85855884 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85855948 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85855964 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85856029 CCGG
66 CCGG
85856033 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85855974 original size:40 final size:38
Alignment explanation
Indices: 85855925--85856032 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85855915 ATCACGATTT
*
85855925 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85855965 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85856005 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85856033 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85862259 original size:46 final size:46
Alignment explanation
Indices: 85862212--85862439 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
85862202 GCTCTCTGAT
* * *
85862212 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
85862258 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
85862304 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
85862350 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
85862396 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
85862440 TCAAAGATAA
Statistics
Matches: 164, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:85865934 original size:10 final size:11
Alignment explanation
Indices: 85865915--85865947 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
85865905 TTGATATGTT
85865915 AATGAAGAGAA
1 AATGAAGAGAA
85865926 AAT-AAGAGAA
1 AATGAAGAGAA
*
85865936 AGTGAAGAGAA
1 AATGAAGAGAA
85865947 A
1 A
85865948 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:85867595 original size:46 final size:46
Alignment explanation
Indices: 85867548--85867775 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
85867538 GCTCTCTGAT
* * *
85867548 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
85867594 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
85867640 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
85867686 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
85867732 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
85867776 TCAAAGATAA
Statistics
Matches: 164, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 163 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:85869373 original size:31 final size:31
Alignment explanation
Indices: 85869338--85869409 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
85869328 TGCTGGGTTG
*
85869338 AAGCCATTACATTATTCATATCACTAG-GCCA
1 AAGCCTTTACATTATTCATATCACT-GTGCCA
*
85869369 AAGCCTTTTCATTATTCATATCACTGTGCCA
1 AAGCCTTTACATTATTCATATCACTGTGCCA
85869400 AAGCCTTTAC
1 AAGCCTTTAC
85869410 TGTAACAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 36 0.97
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (31 bp):
AAGCCTTTACATTATTCATATCACTGTGCCA
Found at i:85869660 original size:26 final size:25
Alignment explanation
Indices: 85869627--85869698 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 25
85869617 GTCTTTTAAT
*
85869627 AACTGGGGCAAAGGCCCTTTTTGATA
1 AACTGGGGCAAA-GCCCTTTTCGATA
*
85869653 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGATA
*
85869679 AATTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
85869699 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 11 0.26
26 28 0.67
27 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:85881807 original size:2 final size:2
Alignment explanation
Indices: 85881800--85881824 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85881790 TCATGACATG
85881800 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
85881825 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85882902 original size:24 final size:25
Alignment explanation
Indices: 85882859--85882910 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
85882849 AAACAAATTG
85882859 TATTCCATTTTCATAGTTTAT-TCA
1 TATTCCATTTTCATAGTTTATATCA
*
85882883 TATTCC-TTTTCTATATTTTATATCA
1 TATTCCATTTTC-ATAGTTTATATCA
85882908 TAT
1 TAT
85882911 CATAGTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.25, C:0.15, G:0.02, T:0.58
Consensus pattern (25 bp):
TATTCCATTTTCATAGTTTATATCA
Found at i:85885136 original size:20 final size:20
Alignment explanation
Indices: 85885108--85885151 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
85885098 TACCAACTTG
*
85885108 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
85885128 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
85885148 CAAC
1 CAAC
85885152 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:85885273 original size:32 final size:33
Alignment explanation
Indices: 85885230--85885292 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
85885220 CACATAGTAC
*
85885230 CATATCAATGCC-ATATCCCAGATATGGTCTAT
1 CATATCAATGCCAATAGCCCAGATATGGTCTAT
* * *
85885262 CATATCGATGCCAATAGCCTAGCTATGGTCT
1 CATATCAATGCCAATAGCCCAGATATGGTCT
85885293 TAGAAGAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (33 bp):
CATATCAATGCCAATAGCCCAGATATGGTCTAT
Done.