Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 288 of 345
Found at i:86297746 original size:40 final size:40
Alignment explanation
Indices: 86297687--86297974 Score: 353
Period size: 40 Copynumber: 7.2 Consensus size: 40
86297677 CAATTGAATG
* * * * * **
86297687 ATATCTGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
86297727 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TT
* * *
86297767 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * *
86297807 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
*
86297847 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
*
86297887 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
* * * *
86297927 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
86297967 ATATCCGG
1 ATATCCGG
86297975 TTGTATTCCG
Statistics
Matches: 219, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
40 218 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTT
Found at i:86307995 original size:49 final size:49
Alignment explanation
Indices: 86307923--86308097 Score: 206
Period size: 49 Copynumber: 3.5 Consensus size: 49
86307913 TGAGGTCACG
* ** *
86307923 TGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGGTAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * * *
86307972 TGTGTAGTATTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
86308023 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*
86308072 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86308098 TGCATACCAG
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
49 60 0.58
50 4 0.04
51 39 0.38
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:86308037 original size:51 final size:49
Alignment explanation
Indices: 86307916--86308110 Score: 201
Period size: 49 Copynumber: 3.9 Consensus size: 49
86307906 TCTATTGTGA
* ** ** *
86307916 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGGTAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * * *
86307965 GGTCGCATGTGTAGTATTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * *
86308015 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * * *
86308065 GGCCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
86308111 GATTTGGATA
Statistics
Matches: 118, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
49 75 0.64
50 4 0.03
51 39 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:86308093 original size:100 final size:100
Alignment explanation
Indices: 86307918--86308110 Score: 296
Period size: 100 Copynumber: 1.9 Consensus size: 100
86307908 TATTGTGAGG
** * * *
86307918 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGGTAATTGGTCGCATGTGTAGTATT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGCCGCATGTGTAGTACT
* * *
86307983 AAGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
*
86308018 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGCCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGCCGCATGTGTAGTACT
*
86308083 ATGTGCAGGCTACTATGCATACCAGATA
66 AAGTGCAGGCTACTATGCATACCAGATA
86308111 GATTTGGATA
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGCCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
Found at i:86310845 original size:24 final size:24
Alignment explanation
Indices: 86310775--86310845 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
86310765 TAGCTCAAAA
* * * *
86310775 GAGCATCCCGATATTAGCTCTCAT
1 GAGCTTCCCGTTAATAGCTCTTAT
* * *
86310799 GAGCTTCCTGTTTAATGGTTCTTAT
1 GAGCTTCCCG-TTAATAGCTCTTAT
86310824 GAGCTTCCCGTTAATAGCTCTT
1 GAGCTTCCCGTTAATAGCTCTT
86310846 CGGAGCATCC
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
24 18 0.50
25 18 0.50
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (24 bp):
GAGCTTCCCGTTAATAGCTCTTAT
Found at i:86310957 original size:26 final size:24
Alignment explanation
Indices: 86310902--86310969 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 24
86310892 CTTAGCTTTT
86310902 ATGAGCTTCCCGATTATGACTCTTC
1 ATGAGCTTCCC-ATTATGACTCTTC
* *
86310927 ATGAGCTTCCCATTAATTGGCTCTTT
1 ATGAGCTTCCCATT-A-TGACTCTTC
* *
86310953 GTGAGCTTCCCAATATG
1 ATGAGCTTCCCATTATG
86310970 GCTCATTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.14
25 13 0.35
26 19 0.51
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (24 bp):
ATGAGCTTCCCATTATGACTCTTC
Found at i:86322044 original size:20 final size:20
Alignment explanation
Indices: 86322019--86322059 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
86322009 ATTGTTTATA
*
86322019 CAAAAGCCGTAGACAATGGC
1 CAAAAGCCGCAGACAATGGC
86322039 CAAAAGCCGCAGACAATGGC
1 CAAAAGCCGCAGACAATGGC
86322059 C
1 C
86322060 CATAGTAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.29, G:0.24, T:0.07
Consensus pattern (20 bp):
CAAAAGCCGCAGACAATGGC
Found at i:86324837 original size:48 final size:47
Alignment explanation
Indices: 86324696--86324841 Score: 195
Period size: 48 Copynumber: 3.0 Consensus size: 47
86324686 ATATATACAC
* **
86324696 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCA-TTCGCTTTACCACATATATAT
** *
86324744 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCG-CTTTACCACATATATAT
86324792 ATCTCATACATATTAT-ACATTAGCCATTCAGCTTTACCACATATATAT
1 ATCTCATACATATT-TCACATTAGCCATTC-GCTTTACCACATATATAT
86324840 AT
1 AT
86324842 ATCTTGTACA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
47 3 0.03
48 81 0.94
49 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (47 bp):
ATCTCATACATATTTCACATTAGCCATTCGCTTTACCACATATATAT
Found at i:86328561 original size:57 final size:58
Alignment explanation
Indices: 86328492--86328602 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
86328482 GTGCCCACTG
*
86328492 ACCGATCTCGCACACATAGTGCTCGGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * * *
86328549 ACCGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACATAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
86328603 TAATCATTCG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 27 0.56
58 21 0.44
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:86328590 original size:29 final size:28
Alignment explanation
Indices: 86328501--86328599 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 28
86328491 GACCGATCTC
* * *
86328501 GCACACATAGTGCTCGGTTGAAGAACTC
1 GCACACATAGTGCTCGGTTAAAGAATTT
* ** **
86328529 GCACACACAGTGCCTCAATTACCG-ATTT
1 GCACACATAGTG-CTCGGTTAAAGAATTT
86328557 CGCACACATAGTGCTCGGTTAAAAGAATTT
1 -GCACACATAGTGCTCGGTT-AAAGAATTT
86328587 GCACACATAGTGC
1 GCACACATAGTGC
86328600 CTCTAATCAT
Statistics
Matches: 54, Mismatches: 13, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
28 18 0.33
29 32 0.59
30 4 0.07
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (28 bp):
GCACACATAGTGCTCGGTTAAAGAATTT
Found at i:86328939 original size:40 final size:40
Alignment explanation
Indices: 86328882--86329155 Score: 487
Period size: 40 Copynumber: 6.9 Consensus size: 40
86328872 GGATTTTGTC
* *
86328882 CCAGCATGAATGC-CTTCGGGGCTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
*
86328921 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
*
86328961 CCAACACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
86329001 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
*
86329041 CCAGCACGAATGCTCTTTGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
86329081 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
*
86329121 TCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86329156 TAACATACTG
Statistics
Matches: 225, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
39 12 0.05
40 213 0.95
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
Found at i:86331216 original size:48 final size:48
Alignment explanation
Indices: 86331062--86331209 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
86331052 ATATATACAC
* **
86331062 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
86331110 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
86331158 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
86331206 ATCT
1 ATCT
86331210 TGTACATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:86332267 original size:35 final size:35
Alignment explanation
Indices: 86332227--86332302 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
86332217 CATAATTTAA
86332227 ATATTTACATAATTTCATATATCCAGTACTCACCT
1 ATATTTACATAATTTCATATATCCAGTACTCACCT
86332262 ATATTTACATAATTTCATATATCCAGTACTCACCT
1 ATATTTACATAATTTCATATATCCAGTACTCACCT
86332297 ATATTT
1 ATATTT
86332303 TGTATTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (35 bp):
ATATTTACATAATTTCATATATCCAGTACTCACCT
Found at i:86342842 original size:14 final size:15
Alignment explanation
Indices: 86342825--86342853 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86342815 TCACAAAAAT
86342825 TTCACACAT-ATAAA
1 TTCACACATAATAAA
86342839 TTCACACATAATAAA
1 TTCACACATAATAAA
86342854 CATTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:86359862 original size:14 final size:15
Alignment explanation
Indices: 86359845--86359873 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86359835 TCACAAAAAC
86359845 TTCACACAT-ATAAA
1 TTCACACATAATAAA
86359859 TTCACACATAATAAA
1 TTCACACATAATAAA
86359874 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:86361280 original size:32 final size:32
Alignment explanation
Indices: 86361234--86361311 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
86361224 CATAAAGGGA
* *
86361234 CACACGCCCATGTAGATTGGGCTATGTGGACT
1 CACACGCCCGTGTAGATTGGGCCATGTGGACT
* *
86361266 CACACGCCTGTGTAGATTGGGCCGTGTGGACT
1 CACACGCCCGTGTAGATTGGGCCATGTGGACT
86361298 CACACGCCCGTGTA
1 CACACGCCCGTGTA
86361312 ACTTGAGGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (32 bp):
CACACGCCCGTGTAGATTGGGCCATGTGGACT
Found at i:86362673 original size:15 final size:15
Alignment explanation
Indices: 86362653--86362682 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86362643 CAACACTTGT
86362653 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
86362668 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
86362683 AAAATACATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:86365607 original size:215 final size:215
Alignment explanation
Indices: 86365236--86365675 Score: 862
Period size: 215 Copynumber: 2.0 Consensus size: 215
86365226 ATCAACTCTA
86365236 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
1 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
86365301 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
66 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
*
86365366 CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
131 CGAATGTGGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
*
86365431 TGAGTGTACTAATTGAATTC
196 CGAGTGTACTAATTGAATTC
86365451 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
1 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
86365516 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
66 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
86365581 CGAATGTGGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
131 CGAATGTGGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
86365646 CGAGTGTACTAATTGAATTC
196 CGAGTGTACTAATTGAATTC
86365666 ATTACAGCAA
1 ATTACAGCAA
86365676 CCAACACTCA
Statistics
Matches: 223, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
215 223 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (215 bp):
ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
CGAATGTGGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
CGAGTGTACTAATTGAATTC
Found at i:86365760 original size:40 final size:40
Alignment explanation
Indices: 86365715--86365882 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
86365705 CGGAATATAA
86365715 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
86365755 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
86365795 CCAGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86365835 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
86365875 CCGGATAT
1 CCGGATAT
86365883 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86373025 original size:215 final size:215
Alignment explanation
Indices: 86372654--86373093 Score: 880
Period size: 215 Copynumber: 2.0 Consensus size: 215
86372644 ATCAACTCTA
86372654 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
1 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
86372719 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
66 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
86372784 CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
131 CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
86372849 CGAGTGTACTAATTGAATTC
196 CGAGTGTACTAATTGAATTC
86372869 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
1 ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
86372934 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
66 TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
86372999 CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
131 CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
86373064 CGAGTGTACTAATTGAATTC
196 CGAGTGTACTAATTGAATTC
86373084 ATTACAGCAA
1 ATTACAGCAA
86373094 CCAACACTCA
Statistics
Matches: 225, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 225 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (215 bp):
ATTACAGCAATACATTCACATAGCCAAATGCATCATTTCATTAATACACATTCTTACTTCACACT
TCATCATTATATGATTTCACAAAATATCAATCAATTCAATAACTGAAATTCATTAGTCGATTGAG
CGAATGTTGCTCATACATGTCGACTTTCCAATGCACATATAACGTACCTTATCCTTTGGGCTTTT
CGAGTGTACTAATTGAATTC
Found at i:86373240 original size:40 final size:39
Alignment explanation
Indices: 86373149--86373299 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
86373139 ATAATCACGT
* * *
86373149 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
86373189 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
86373229 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
86373269 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
86373300 TCATTCAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 84 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:86373283 original size:80 final size:80
Alignment explanation
Indices: 86373149--86373298 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
86373139 ATAATCACGT
* *
86373149 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
86373213 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
86373229 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
86373292 CCCGGAT
64 CCCGGAT
86373299 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:86378356 original size:41 final size:41
Alignment explanation
Indices: 86378311--86378428 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
86378301 TGAAAGATAA
86378311 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
86378352 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
86378382 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
86378423 ATGTAG
1 ATGTAG
86378429 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:86378367 original size:71 final size:71
Alignment explanation
Indices: 86378279--86378442 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
86378269 GAGATGTATC
86378279 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
86378344 AGGACA
66 AGGACA
86378350 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
86378415 AGGACA
66 AGGACA
86378421 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
86378443 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:86386904 original size:40 final size:40
Alignment explanation
Indices: 86386819--86386969 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
86386809 AATTGAATGA
* * *
86386819 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
86386859 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
86386900 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
86386939 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
86386970 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:86386983 original size:40 final size:40
Alignment explanation
Indices: 86386855--86386985 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
86386845 TATGCTGGAA
* * *
86386855 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
86386895 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
86386935 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
86386975 ATTATATCCGG
1 ATTATATCCGG
86386986 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:86390383 original size:29 final size:29
Alignment explanation
Indices: 86390321--86390423 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
86390311 GTGACGAGAT
* * *
86390321 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
86390350 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
86390379 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
86390408 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86390424 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:86393090 original size:23 final size:23
Alignment explanation
Indices: 86393060--86393106 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
86393050 AACGCAGGAA
86393060 ATGTATGTATACATATTATTAGT
1 ATGTATGTATACATATTATTAGT
86393083 ATGTATGTATACATATTATTAGT
1 ATGTATGTATACATATTATTAGT
86393106 A
1 A
86393107 GTGATCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (23 bp):
ATGTATGTATACATATTATTAGT
Found at i:86398020 original size:2 final size:2
Alignment explanation
Indices: 86398013--86398045 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86398003 AACACATGCT
86398013 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86398046 CATAATAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86399374 original size:20 final size:20
Alignment explanation
Indices: 86399345--86399389 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
86399335 AGCACATGTA
* *
86399345 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAACTT
*
86399365 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
86399385 TTCAT
1 TTCAT
86399390 TTTAGTTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:86406020 original size:28 final size:28
Alignment explanation
Indices: 86405980--86406058 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
86405970 GCAATCAAAT
* * *
86405980 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
86406008 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
86406036 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
86406059 CGGATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:86407546 original size:26 final size:26
Alignment explanation
Indices: 86407517--86407569 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
86407507 GGCCTTGTAA
86407517 GCCTGATTAAAGGATAATATACGTGT
1 GCCTGATTAAAGGATAATATACGTGT
86407543 GCCTGATTAAAGGATAATATACGTGT
1 GCCTGATTAAAGGATAATATACGTGT
86407569 G
1 G
86407570 TATGAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (26 bp):
GCCTGATTAAAGGATAATATACGTGT
Found at i:86408130 original size:29 final size:29
Alignment explanation
Indices: 86408086--86408182 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
86408076 CCGTAATCGA
*
86408086 GCACTGTGTGTACGAGATTGGTTGTTGAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
* ** ****
86408115 GCACTGTATGTGCGAG-TTCCATAACCGA-
1 GCACTGTGTGTGCGAGATT-GGTTGTTGAG
86408143 GCACTGTGTGTGCGAGATTGGTTGTTGAG
1 GCACTGTGTGTGCGAGATTGGTTGTTGAG
86408172 GCACTGTGTGT
1 GCACTGTGTGT
86408183 TGAGGCACTG
Statistics
Matches: 50, Mismatches: 15, Indels: 6
0.70 0.21 0.08
Matches are distributed among these distances:
28 20 0.40
29 30 0.60
ACGTcount: A:0.18, C:0.15, G:0.35, T:0.32
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATTGGTTGTTGAG
Found at i:86408144 original size:57 final size:57
Alignment explanation
Indices: 86408056--86408178 Score: 201
Period size: 57 Copynumber: 2.2 Consensus size: 57
86408046 AAGTGAACAT
* * * *
86408056 AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCACTGTGTGTACGAGATTGGTTGTTG
1 AGGCACTGTATGTGCGAGTTCCATAACCGAGCACTGTGTGTACGAGATTGGTTGTTG
*
86408113 AGGCACTGTATGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATTGGTTGTTG
1 AGGCACTGTATGTGCGAGTTCCATAACCGAGCACTGTGTGTACGAGATTGGTTGTTG
86408170 AGGCACTGT
1 AGGCACTGT
86408179 GTGTTGAGGC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.19, C:0.16, G:0.34, T:0.31
Consensus pattern (57 bp):
AGGCACTGTATGTGCGAGTTCCATAACCGAGCACTGTGTGTACGAGATTGGTTGTTG
Found at i:86408198 original size:17 final size:15
Alignment explanation
Indices: 86408165--86408202 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
86408155 CGAGATTGGT
86408165 TGTTGAGGCACTGTG
1 TGTTGAGGCACTGTG
86408180 TGTTGAGGCACTGTG
1 TGTTGAGGCACTGTG
86408195 TGTGTGAG
1 TGT-TGAG
86408203 TTTCGTAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.13, C:0.11, G:0.42, T:0.34
Consensus pattern (15 bp):
TGTTGAGGCACTGTG
Found at i:86408225 original size:72 final size:72
Alignment explanation
Indices: 86408108--86408254 Score: 222
Period size: 72 Copynumber: 2.0 Consensus size: 72
86408098 CGAGATTGGT
* * * *
86408108 TGTTGAGGCACTGTATGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATTGGTTGTTGAGG
1 TGTTGAGGCACTGTATGTGCGAGTTCCATAACAGAGCAATGTGTGTGCGAGATCGGTTATTGAGG
86408173 CACTGTG
66 CACTGTG
* * * *
86408180 TGTTGAGGCACTGTGTGTGTGAGTTTCGTAACAGAGCAATGTGTGTGCGAGATCGGTTATTGAGG
1 TGTTGAGGCACTGTATGTGCGAGTTCCATAACAGAGCAATGTGTGTGCGAGATCGGTTATTGAGG
86408245 CACTGTG
66 CACTGTG
86408252 TGT
1 TGT
86408255 GTGATTTCCG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.18, C:0.14, G:0.35, T:0.32
Consensus pattern (72 bp):
TGTTGAGGCACTGTATGTGCGAGTTCCATAACAGAGCAATGTGTGTGCGAGATCGGTTATTGAGG
CACTGTG
Found at i:86408254 original size:29 final size:29
Alignment explanation
Indices: 86408219--86408428 Score: 129
Period size: 28 Copynumber: 7.3 Consensus size: 29
86408209 AACAGAGCAA
86408219 TGTGTGTGCGAGATCGGTTATTGAGGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* ** * *** *
86408248 TGTGTGTGTGATTTCCG-TAACCAAGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* *
86408276 TGTGTGTGCGAGATTGGTTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* * * *** *
86408305 TATGTGTGCGAGTTCCG-TAACCAAGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* *
86408333 TGTGTGTGCGAGATCAGTTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* * *** *
86408362 TGTGTGTGCGAGTTCTG-TAACCAAGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
* * *
86408390 TGTGTGTGCAAGATCGGTTGTTGGGGCAC
1 TGTGTGTGCGAGATCGGTTATTGAGGCAC
86408419 TAAGTGTGTG
1 T--GTGTGTG
86408429 AAATGAGATC
Statistics
Matches: 125, Mismatches: 51, Indels: 8
0.68 0.28 0.04
Matches are distributed among these distances:
28 59 0.47
29 59 0.47
31 7 0.06
ACGTcount: A:0.19, C:0.16, G:0.34, T:0.31
Consensus pattern (29 bp):
TGTGTGTGCGAGATCGGTTATTGAGGCAC
Found at i:86408280 original size:57 final size:57
Alignment explanation
Indices: 86408180--86408429 Score: 358
Period size: 57 Copynumber: 4.4 Consensus size: 57
86408170 AGGCACTGTG
* *
86408180 TGTTGAGGCACTGTGTGTGTGAGTTTCGTAA-CAGAGCAATGTGTGTGCGAGATCGGT
1 TGTTGAGGCACTGTGTGTGTGAGTTCCGTAACCA-AGCACTGTGTGTGCGAGATCGGT
* * *
86408237 TATTGAGGCACTGTGTGTGTGATTTCCGTAACCAAGCACTGTGTGTGCGAGATTGGT
1 TGTTGAGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGT
* * *
86408294 TGTTGAGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCAGT
1 TGTTGAGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGT
* * *
86408351 TGTTGAGGCACTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCAAGATCGGT
1 TGTTGAGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGT
* **
86408408 TGTTGGGGCACTAAGTGTGTGA
1 TGTTGAGGCACTGTGTGTGTGA
86408430 AATGAGATCA
Statistics
Matches: 173, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
57 171 0.99
58 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.31
Consensus pattern (57 bp):
TGTTGAGGCACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGT
Found at i:86408286 original size:129 final size:129
Alignment explanation
Indices: 86408056--86408311 Score: 397
Period size: 129 Copynumber: 2.0 Consensus size: 129
86408046 AAGTGAACAT
* * *
86408056 AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCACTGTGTGTACGAGATTGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCAATGTGTGTACGAGATCGGTTATTGAGGCACTG
* *
86408121 TATGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATTGGTTGTTGAGGCACTGTGTGTTG
66 TATGTGCGAGTTCCATAACCAAGCACTGTGTGTGCGAGATTGGTTGTTGAGGCACTATGTGTTG
* *
86408185 AGGCACTGTGTGTGTGAGTTTCGTAA-CAGAGCAATGTGTGTGCGAGATCGGTTATTGAGGCACT
1 AGGCACTGTGTGTGTGAGTTCCGTAATC-GAGCAATGTGTGTACGAGATCGGTTATTGAGGCACT
* * * *
86408249 GTGTGTGTGATTTCCGTAACCAAGCACTGTGTGTGCGAGATTGGTTGTTGAGGCACTATGTGT
65 GTATGTGCGAGTTCCATAACCAAGCACTGTGTGTGCGAGATTGGTTGTTGAGGCACTATGTGT
86408312 GCGAGTTCCG
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
128 1 0.01
129 114 0.99
ACGTcount: A:0.19, C:0.15, G:0.34, T:0.32
Consensus pattern (129 bp):
AGGCACTGTGTGTGTGAGTTCCGTAATCGAGCAATGTGTGTACGAGATCGGTTATTGAGGCACTG
TATGTGCGAGTTCCATAACCAAGCACTGTGTGTGCGAGATTGGTTGTTGAGGCACTATGTGTTG
Found at i:86408339 original size:28 final size:28
Alignment explanation
Indices: 86408187--86408398 Score: 131
Period size: 28 Copynumber: 7.5 Consensus size: 28
86408177 GTGTGTTGAG
* *
86408187 GCACTGTGTGTGTGAGTTTCGTAA-CAGA
1 GCACTGTGTGTGCGAGTTCCGTAACCA-A
* * * *** *
86408215 GCAATGTGTGTGCGAGATCGGTTATTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* *
86408244 GCACTGTGTGTGTGATTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* **** *
86408272 GCACTGTGTGTGCGAGATT-GGTTGTTGAG
1 GCACTGTGTGTGCGAG-TTCCG-TAACCAA
*
86408301 GCACTATGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
86408329 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
86408358 GCACTGTGTGTGCGAGTTCTGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
86408386 GCACTGTGTGTGC
1 GCACTGTGTGTGC
86408399 AAGATCGGTT
Statistics
Matches: 131, Mismatches: 47, Indels: 12
0.69 0.25 0.06
Matches are distributed among these distances:
28 71 0.54
29 59 0.45
30 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.31
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:86412893 original size:27 final size:27
Alignment explanation
Indices: 86412708--86412904 Score: 225
Period size: 27 Copynumber: 7.3 Consensus size: 27
86412698 GGAAAAATGG
* * * *
86412708 TAATTTTACCCAACAAGGGTATCTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
86412734 GTAATTCTACCCTACATGGGTAATTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * * *
86412762 TATTTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
86412789 TAATTCTATCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
86412816 TAATTCTAACCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
86412843 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
86412870 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
86412897 TAATTCTA
1 TAATTCTA
86412905 GAACTTATCC
Statistics
Matches: 147, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:86418962 original size:27 final size:26
Alignment explanation
Indices: 86418914--86418965 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
86418904 GCGAGGCTGC
*
86418914 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
86418940 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
86418966 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86419815 original size:27 final size:27
Alignment explanation
Indices: 86419618--86419805 Score: 259
Period size: 27 Copynumber: 7.0 Consensus size: 27
86419608 GGGCAAAATG
* * * * *
86419618 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86419645 GTAATTCTACCCTGCAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86419672 GTATTTCTACTCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86419699 GTAATTCTATCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
86419726 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
86419753 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86419780 GTAATTCTACCTTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
86419806 GATCATTCTA
Statistics
Matches: 142, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:86421448 original size:29 final size:28
Alignment explanation
Indices: 86421416--86421518 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
86421406 GGGACGAGAT
* *
86421416 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
86421445 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
86421474 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
86421503 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86421519 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:86429450 original size:29 final size:28
Alignment explanation
Indices: 86429417--86429519 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
86429407 GGGACGAGAT
* *
86429417 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
86429446 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
86429475 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
86429504 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86429520 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:86433043 original size:40 final size:40
Alignment explanation
Indices: 86432954--86433175 Score: 296
Period size: 39 Copynumber: 5.7 Consensus size: 40
86432944 TCGAATGATG
* *
86432954 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
86432994 T-CGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
86433033 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86433071 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86433110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86433151 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86433176 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
38 25 0.15
39 84 0.51
40 55 0.33
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86433198 original size:79 final size:77
Alignment explanation
Indices: 86432954--86433173 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 77
86432944 TCGAATGATG
* * * * *
86432954 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAAT-CGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCA-T
* *
86433017 TGTGCAAGTTACTAAT
62 TGTGCGAGTTACTAAA
* *
86433033 TCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGTG
1 TCCGGGTTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGTG
86433098 CGAGTTACTAAA
66 CGAGTTACTAAA
*
86433110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
86433174 TGAACGAGTA
Statistics
Matches: 126, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
77 36 0.29
78 41 0.33
79 47 0.37
80 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGGTTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGTG
CGAGTTACTAAA
Found at i:86439730 original size:16 final size:17
Alignment explanation
Indices: 86439709--86439742 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86439699 AGTTAGTAAT
*
86439709 AAAGAAATGGAAA-AAA
1 AAAGAAAGGGAAAGAAA
86439725 AAAGAAAGGGAAAGAAA
1 AAAGAAAGGGAAAGAAA
86439742 A
1 A
86439743 TGATGAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (17 bp):
AAAGAAAGGGAAAGAAA
Found at i:86440755 original size:40 final size:40
Alignment explanation
Indices: 86440553--86440775 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
86440543 TCGAATGATG
* * *
86440553 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
86440593 TCCGGACTAAGAT-CCGAAGTCATTTGTGCGAGTTATTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86440633 TCCGGGCTAAG-CCTGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86440671 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86440710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86440751 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86440776 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 25 0.16
39 55 0.34
40 71 0.44
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86440755 original size:79 final size:79
Alignment explanation
Indices: 86440553--86440773 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
86440543 TCGAATGATG
* * * * *
86440553 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGTCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCA-
* *
86440616 TTGTGCGAGTTATTAAT
63 TTGTGCGAGTTACTAAA
* *
86440633 TCCGGGCTAAG-CCTGAAGGCA-TTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTG
86440696 TGCGAGTTACTAAA
66 TGCGAGTTACTAAA
* *
86440710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
86440774 TGAACGAGTA
Statistics
Matches: 123, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
77 26 0.21
78 35 0.28
79 49 0.40
80 13 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTG
TGCGAGTTACTAAA
Found at i:86440789 original size:40 final size:38
Alignment explanation
Indices: 86440634--86440775 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 38
86440624 GTTATTAATT
* *
86440634 CCGGGCTAAG-CCTGAAGGCATTGTGCGAGTTACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATT-TGCGAGTTACTATAA
86440671 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATT-TGCGAGTTACTATAA
86440710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCA-TT-TGCGAGTTACTATAA
* *
86440751 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTG
86440776 AACGAGTAGC
Statistics
Matches: 97, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
38 11 0.11
39 50 0.52
40 34 0.35
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTTGCGAGTTACTATAA
Found at i:86440797 original size:79 final size:78
Alignment explanation
Indices: 86440553--86440808 Score: 236
Period size: 79 Copynumber: 3.3 Consensus size: 78
86440543 TCGAATGATG
* * * * * * * *
86440553 TCCGGGCTAAGTCCCAAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGTCATT
1 TCCGGGTTAAATCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCA-T
* *
86440617 TGTGCGAGTTATTAAT
63 TGTGCGAGTTACTAAA
* * * *
86440633 TCCGGGCT-AAGCCTGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGT
1 TCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGT
86440697 GCGAGTTACTAAA
66 GCGAGTTACTAAA
* *
86440710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
86440774 -TGAACGAG-TAGCTATA
64 GTG--CGAGTTA-CTAAA
*
86440790 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
86440809 TACGTGATTC
Statistics
Matches: 148, Mismatches: 21, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
77 23 0.16
78 38 0.26
79 66 0.45
80 21 0.14
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
TCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTGT
GCGAGTTACTAAA
Found at i:86457184 original size:28 final size:27
Alignment explanation
Indices: 86457121--86457190 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
86457111 ATAGTGAGTC
86457121 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
86457148 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
86457176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86457191 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86465008 original size:28 final size:27
Alignment explanation
Indices: 86464945--86465014 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
86464935 ATAGTGAGTC
86464945 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
86464972 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
86465000 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86465015 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86467128 original size:39 final size:40
Alignment explanation
Indices: 86467030--86467252 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
86467020 GCTACTTGTT
** *
86467030 CAAATGCCTTCGGGAGATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
86467070 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
* **
86467110 C-AGTGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
* * *
86467149 C-AATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
*** * * * *
86467187 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAACCCAGATTTAGTAAC-TCGCA
*
86467228 CAAA-GCCTTCGGGACTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAACCCAGA
86467253 CATCATTCGA
Statistics
Matches: 154, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
38 23 0.15
39 56 0.36
40 64 0.42
41 11 0.07
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
Found at i:86467215 original size:117 final size:119
Alignment explanation
Indices: 86467032--86467245 Score: 265
Period size: 117 Copynumber: 1.8 Consensus size: 119
86467022 TACTTGTTCA
* * *
86467032 AATGCCTTCGGGAGATAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGAT
1 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGAT
* **
86467097 TTAGTAAC-TCGCACAGTGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCAC
66 TTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCAC
* *** *
86467150 AATGCCTTCGGG-CTTAGCCCAGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACATAGCCCAGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCAG
* *
86467212 ATTTAGTCACTTAGCGCAAAGCCTTCGGGACTTA
64 ATTTAGTAACTTAGCACAAAGCCTTCGGGACTTA
86467246 GCCCAGACAT
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
116 4 0.05
117 45 0.56
118 31 0.39
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCAGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGAT
TTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCAC
Found at i:86476575 original size:40 final size:40
Alignment explanation
Indices: 86476520--86476683 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
86476510 TGAATGATAC
* * *
86476520 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
86476560 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
86476600 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
86476640 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
86476680 CCGG
1 CCGG
86476684 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:86480206 original size:31 final size:31
Alignment explanation
Indices: 86480171--86480234 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86480161 CCTTTTCATG
86480171 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
86480202 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
86480233 TT
1 TT
86480235 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:86480477 original size:24 final size:24
Alignment explanation
Indices: 86480426--86480559 Score: 191
Period size: 24 Copynumber: 5.6 Consensus size: 24
86480416 GCTTTATCAT
*
86480426 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
86480451 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
86480475 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
86480498 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
86480522 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
86480546 ATAACTGGGGCATA
1 ATAACTGGGGCATA
86480560 TGTAACACCC
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
23 23 0.23
24 67 0.66
25 12 0.12
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86480505 original size:47 final size:48
Alignment explanation
Indices: 86480426--86480557 Score: 187
Period size: 47 Copynumber: 2.8 Consensus size: 48
86480416 GCTTTATCAT
*
86480426 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
86480475 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
*
86480522 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA
86480558 TATGTAACAC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
47 44 0.57
48 21 0.27
49 12 0.16
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:86480526 original size:71 final size:72
Alignment explanation
Indices: 86480425--86480559 Score: 202
Period size: 71 Copynumber: 1.9 Consensus size: 72
86480415 TGCTTTATCA
*
86480425 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
86480490 GCCCTTT
66 GCCCTTT
* * **
86480497 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
86480560 TGTAACACCC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
71 44 0.77
72 13 0.23
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:86482049 original size:28 final size:28
Alignment explanation
Indices: 86482017--86482115 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
86482007 TGCATAAGCC
*
86482017 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
86482045 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
86482073 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
86482102 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86482116 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:86489715 original size:28 final size:28
Alignment explanation
Indices: 86489683--86489781 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
86489673 TGCATAAGCC
*
86489683 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
86489711 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
86489739 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
86489768 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86489782 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:86491175 original size:20 final size:20
Alignment explanation
Indices: 86491150--86491210 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
86491140 TTATGATTAC
86491150 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
86491170 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
86491190 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
86491210 A
1 A
86491211 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86491285 original size:25 final size:25
Alignment explanation
Indices: 86491253--86491300 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86491243 ATACATAAAC
* * *
86491253 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86491278 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86491301 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86502013 original size:14 final size:14
Alignment explanation
Indices: 86501996--86502026 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86501986 AGTAAAATGT
86501996 TTTCCGGAAAATAA
1 TTTCCGGAAAATAA
*
86502010 TTTCTGGAAAATAA
1 TTTCCGGAAAATAA
86502024 TTT
1 TTT
86502027 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATAA
Found at i:86502157 original size:18 final size:19
Alignment explanation
Indices: 86502130--86502175 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
86502120 GCAAAGCTGT
*
86502130 TTTTACATATATTAACAAA
1 TTTTATATATATTAACAAA
*
86502149 TTTATATATATATTAATAAA
1 TTT-TATATATATTAACAAA
86502169 -TTTATAT
1 TTTTATAT
86502176 TTTAAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 5 0.21
20 14 0.58
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTATATATATTAACAAA
Found at i:86502161 original size:20 final size:20
Alignment explanation
Indices: 86502136--86502175 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
86502126 CTGTTTTTAC
86502136 ATATATTAACAAATTTATAT
1 ATATATTAACAAATTTATAT
*
86502156 ATATATTAATAAATTTATAT
1 ATATATTAACAAATTTATAT
86502176 TTTAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTAACAAATTTATAT
Found at i:86502237 original size:18 final size:18
Alignment explanation
Indices: 86502214--86502291 Score: 66
Period size: 18 Copynumber: 4.0 Consensus size: 18
86502204 GATTTATTTA
86502214 TAAATAAATAAATCAAAT
1 TAAATAAATAAATCAAAT
*
86502232 TAAATATATAATAATACTCAATT
1 T-AA-ATA-AATAA-A-TCAAAT
*
86502255 ATAAATAAATAAATCTAAT
1 -TAAATAAATAAATCAAAT
* *
86502274 TAAATATATCAATCAAAT
1 TAAATAAATAAATCAAAT
86502292 GGTTTAACTG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
18 16 0.33
19 6 0.12
20 4 0.08
21 10 0.21
22 4 0.08
23 7 0.15
24 1 0.02
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATAAATAAATCAAAT
Found at i:86504823 original size:5 final size:6
Alignment explanation
Indices: 86504791--86504820 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
86504781 AAGGATGGGA
86504791 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
86504821 AAGATCAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:86509147 original size:15 final size:16
Alignment explanation
Indices: 86509122--86509170 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
86509112 GAAAACTTAT
86509122 GTATGAAAAATCATTG
1 GTATGAAAAATCATTG
* *
86509138 GTA-GAGAAATC-TTAT
1 GTATGAAAAATCATT-G
86509153 GTATGAAAAATCATTG
1 GTATGAAAAATCATTG
86509169 GT
1 GT
86509171 TATGTACCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 2 0.08
15 10 0.38
16 12 0.46
17 2 0.08
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (16 bp):
GTATGAAAAATCATTG
Found at i:86509152 original size:31 final size:31
Alignment explanation
Indices: 86509109--86509170 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
86509099 AATTTGCAAA
86509109 AGAGAAAACTTATGTATGAAAAATCATTGGT
1 AGAGAAAACTTATGTATGAAAAATCATTGGT
*
86509140 AGAGAAATCTTATGTATGAAAAATCATTGGT
1 AGAGAAAACTTATGTATGAAAAATCATTGGT
86509171 TATGTACCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (31 bp):
AGAGAAAACTTATGTATGAAAAATCATTGGT
Found at i:86510355 original size:29 final size:29
Alignment explanation
Indices: 86510313--86510369 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
86510303 AATAAAGTAA
86510313 TTGAAATGAATTATCCATGTCTAAGATCT
1 TTGAAATGAATTATCCATGTCTAAGATCT
86510342 TTGAAATGAATTATCCATGTCTAAGATC
1 TTGAAATGAATTATCCATGTCTAAGATC
86510370 CTCGTACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (29 bp):
TTGAAATGAATTATCCATGTCTAAGATCT
Found at i:86513350 original size:16 final size:16
Alignment explanation
Indices: 86513329--86513363 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
86513319 TATGATATAA
*
86513329 TATCTTAGTTGAGTAT
1 TATCTTAATTGAGTAT
*
86513345 TATCTTAATTTAGTAT
1 TATCTTAATTGAGTAT
86513361 TAT
1 TAT
86513364 TATATTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (16 bp):
TATCTTAATTGAGTAT
Found at i:86513417 original size:28 final size:28
Alignment explanation
Indices: 86513381--86513457 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
86513371 AGATATTACG
*
86513381 TAAACTTTTATTATATTAAGTCAA-GTTT
1 TAAAGTTTTATTATATTAAGT-AACGTTT
*
86513409 TATAGTTTTATTATATTACA-TAACGTTT
1 TAAAGTTTTATTATATTA-AGTAACGTTT
86513437 TAAAGTTTTATTATATTAAGT
1 TAAAGTTTTATTATATTAAGT
86513458 TTTATAGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
27 3 0.07
28 39 0.91
29 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.52
Consensus pattern (28 bp):
TAAAGTTTTATTATATTAAGTAACGTTT
Found at i:86513480 original size:28 final size:26
Alignment explanation
Indices: 86513403--86513480 Score: 65
Period size: 28 Copynumber: 3.0 Consensus size: 26
86513393 ATATTAAGTC
*
86513403 AAGTTTTATAGTTTTAT-TATATTACAT
1 AAGTTTTATAGTTTTATATATA-TA-TT
*
86513430 AACGTTTTAAAG-TTT-TAT-TATATT
1 AA-GTTTTATAGTTTTATATATATATT
86513454 AAGTTTTATAGTTTTAGTATATCATAT
1 AAGTTTTATAGTTTTA-TATAT-ATAT
86513481 ATTTAGATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
23 8 0.20
24 6 0.15
25 2 0.05
26 6 0.15
27 7 0.17
28 12 0.29
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (26 bp):
AAGTTTTATAGTTTTATATATATATT
Found at i:86520383 original size:16 final size:16
Alignment explanation
Indices: 86520364--86520394 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86520354 CTTCTTCACT
86520364 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
86520380 TACTTACTTACTTAA
1 TACTCACTTACTTAA
86520395 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:86520400 original size:20 final size:20
Alignment explanation
Indices: 86520361--86520400 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
86520351 AAACTTCTTC
* *
86520361 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
86520381 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
86520401 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:86520711 original size:53 final size:53
Alignment explanation
Indices: 86520584--86520837 Score: 261
Period size: 55 Copynumber: 4.8 Consensus size: 53
86520574 ATACGGGTAC
* * * *
86520584 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT--AAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
86520632 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
86520685 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
86520740 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
86520793 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
86520838 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
48 40 0.23
51 2 0.01
52 2 0.01
53 45 0.26
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:86520774 original size:108 final size:110
Alignment explanation
Indices: 86520630--86520830 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
86520620 TATCCTTTTA
* *
86520630 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
86520693 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
86520738 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
86520803 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
86520831 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:86522952 original size:25 final size:25
Alignment explanation
Indices: 86522923--86522970 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86522913 TAATGCGAGC
86522923 ATATCAGGAAGCTCACAAAGAGCCT
1 ATATCAGGAAGCTCACAAAGAGCCT
* * *
86522948 ATATCAGGACGTTCATAAAGAGC
1 ATATCAGGAAGCTCACAAAGAGC
86522971 TGCATTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (25 bp):
ATATCAGGAAGCTCACAAAGAGCCT
Found at i:86523477 original size:21 final size:21
Alignment explanation
Indices: 86523453--86523492 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86523443 GAATTTAACA
*
86523453 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCAATTCATAC
*
86523474 TCAATTTAATTCAATTCAT
1 TCAATTTAATCCAATTCAT
86523493 GTCCTAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
TCAATTTAATCCAATTCATAC
Found at i:86526496 original size:40 final size:40
Alignment explanation
Indices: 86526441--86526648 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
86526431 TGAATGATAC
* * *
86526441 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* ** *
86526481 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
** * *
86526521 CCGGGCTAAGACTTGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* * ** *
86526561 CCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * **
86526601 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
86526641 CC-GGCTAA
1 CCGGGCTAA
86526649 ATTCCGAAGA
Statistics
Matches: 132, Mismatches: 34, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
39 6 0.05
40 125 0.95
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:86526639 original size:80 final size:80
Alignment explanation
Indices: 86526441--86526648 Score: 296
Period size: 80 Copynumber: 2.6 Consensus size: 80
86526431 TGAATGATAC
* * * *
86526441 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCAAAGGCATTTG
86526506 TGCAAGTTACCAAAT
66 TGCAAGTTACCAAAT
** *
86526521 CCGGGCTAAGACTTGAAGGC-ATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCAAAGGCATT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATATCCGGGCTAAGACCCAAAGGCATT
86526584 TGTGCAAGTTACCAAAT
64 TGTGCAAGTTACCAAAT
* *
86526601 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGATTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAA
86526649 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
79 10 0.09
80 97 0.87
81 5 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCAAAGGCATTTG
TGCAAGTTACCAAAT
Found at i:86536797 original size:40 final size:40
Alignment explanation
Indices: 86536738--86536879 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
86536728 AAATTGAATG
* * *
86536738 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
86536778 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
86536818 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
86536858 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
86536880 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:86536903 original size:40 final size:39
Alignment explanation
Indices: 86536776--86536905 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
86536766 ATGCTGGAAA
* * *
86536776 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
86536817 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
86536855 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
86536896 TTATATCCGG
1 TTATATCCGG
86536906 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:86541700 original size:28 final size:28
Alignment explanation
Indices: 86541660--86541752 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
86541650 ATGTACTATT
86541660 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
86541688 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATTACCATA
* * *
86541716 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATA
86541744 ATACCCCTA
1 ATACCCCTA
86541753 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATA
Found at i:86541917 original size:27 final size:27
Alignment explanation
Indices: 86541859--86541948 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 27
86541849 AGGAAGCGTC
86541859 CTGGTGG-CTATGCCACAAATTATCTGTT
1 CTGGTGGCCT-TGCCACAAA-TATCTGTT
*
86541887 CTGGTGGCCTTGCCACATATATCTGTT
1 CTGGTGGCCTTGCCACAAATATCTGTT
86541914 CTGGTGGCAC-TGCCACAAAATATCTGTAT
1 CTGGTGGC-CTTGCCAC-AAATATCTGT-T
86541943 CTGGTG
1 CTGGTG
86541949 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
27 22 0.39
28 25 0.45
29 9 0.16
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTTGCCACAAATATCTGTT
Found at i:86541967 original size:55 final size:56
Alignment explanation
Indices: 86541859--86541973 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
86541849 AGGAAGCGTC
* *
86541859 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
* *
86541914 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCT-TGCCACATATATCTGTAT
86541970 CTGG
1 CTGG
86541974 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 32 0.62
56 19 0.37
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTAT
Found at i:86546095 original size:30 final size:30
Alignment explanation
Indices: 86546050--86546106 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
86546040 ATTTAATACG
*
86546050 AACTTTGGCAAAATTACATTTTTGCCCTTA
1 AACTTTGGCAAAATTACACTTTTGCCCTTA
* *
86546080 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
86546107 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCTTA
Found at i:86550708 original size:20 final size:22
Alignment explanation
Indices: 86550662--86550708 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
86550652 GGAATCCAAG
86550662 AATTTTCGTTATGTTTTAGTTA
1 AATTTTCGTTATGTTTTAGTTA
*
86550684 AATTTTC-TTA-GTTTTATTTA
1 AATTTTCGTTATGTTTTAGTTA
*
86550704 CATTT
1 AATTT
86550709 AATAAAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 13 0.57
21 3 0.13
22 7 0.30
ACGTcount: A:0.23, C:0.06, G:0.09, T:0.62
Consensus pattern (22 bp):
AATTTTCGTTATGTTTTAGTTA
Found at i:86551351 original size:21 final size:21
Alignment explanation
Indices: 86551325--86551368 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
86551315 ATACACTCAG
86551325 CTTAATTGAGCT-ATTACTAAA
1 CTTAATTGAGCTAATTA-TAAA
86551346 CTTAATTGAGCTAATTATAAA
1 CTTAATTGAGCTAATTATAAA
86551367 CT
1 CT
86551369 ACAAGACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
CTTAATTGAGCTAATTATAAA
Found at i:86557117 original size:40 final size:40
Alignment explanation
Indices: 86557070--86557259 Score: 231
Period size: 40 Copynumber: 4.7 Consensus size: 40
86557060 CTTGCACAAG
* *
86557070 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
86557110 GCCTTCGGGACTTAGCTCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
86557150 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
86557190 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACGAAA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCAC-AAAT
*
86557231 GCCTTCGGGACTTAGCCCGGATATCAGTC
1 GCCTTCGGGTCTTAGCCCGGATAT-AGTC
86557260 GAATAACCAC
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.73
41 27 0.21
42 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:86562994 original size:21 final size:20
Alignment explanation
Indices: 86562955--86562994 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86562945 CTTTAAAACA
*
86562955 GGGCACACGCCCGTATGGAT
1 GGGCACACGCCCATATGGAT
*
86562975 GGGCAACACGCCCATGTGGA
1 GGGC-ACACGCCCATATGGA
86562995 ATTTTAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (20 bp):
GGGCACACGCCCATATGGAT
Found at i:86564364 original size:48 final size:48
Alignment explanation
Indices: 86564297--86564432 Score: 245
Period size: 48 Copynumber: 2.8 Consensus size: 48
86564287 TCACATATTC
86564297 GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACACCTATATAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACACCTATATAT
86564345 GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACACCTATATAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACACCTATATAT
* * *
86564393 GTGCCGATGCCATGTCCCAGACACGGTCTTACATTAACAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACAC
86564433 ACCTCGTAGC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACACCTATATAT
Found at i:86564499 original size:46 final size:46
Alignment explanation
Indices: 86564441--86564611 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
86564431 ACACCTCGTA
86564441 GCCGATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTTGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCTTGAG
* * * ** *
86564487 GCCAATGCATGTCCCAAACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTTGAG
* * ** *
86564533 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATCTTGAG
* *
86564581 GCCGATGCATGTCTCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
86564612 AGCACACAAA
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 53 0.51
47 27 0.26
48 23 0.22
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTTGAG
Found at i:86564569 original size:94 final size:92
Alignment explanation
Indices: 86564444--86564614 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 92
86564434 CCTCGTAGCC
**
86564444 GATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTTGAGGCCAATGCATGTCCCAAACAT
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAATGAGGCCAATGCATGTCCCAAACAT
*
86564508 GTCTTACATTAGCTCTCATCTCAATGCT
65 GTCTTACACTAGCTCTCATCTCAATGCT
* * * * *
86564536 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCTCAGACA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAAACA
86564601 TGTCTTACACTAGC
64 TGTCTTACACTAGC
86564615 ACACAAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 50 0.74
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCCAAACATG
TCTTACACTAGCTCTCATCTCAATGCT
Found at i:86564572 original size:48 final size:48
Alignment explanation
Indices: 86564150--86564611 Score: 212
Period size: 48 Copynumber: 9.8 Consensus size: 48
86564140 CATAGAGTAT
* *
86564150 AATGCTGATGCCATGTCTCAGACATGGTCTTACACTGG--CTCATCCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-C-TC
* * * * *
86564198 AA-GTCGATGCCATGTCCTAGACATGGTCTTACACTGAC-CATCGTAATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT-CTC
* * ** * * * * *
86564246 GAGGCCGACACCATGTCCCAGACGTGGTCTTATACTAGCTTTCACATATTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCAT-CTC
* * * * * *
86564297 -GTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACAC-CTATAT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATCTC
* * * * * *
86564343 ATGTGCCGATGCCATGTCCCAGACATGGTCTTGCATTGACAC-CTATAT-
1 A-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATCTC
* * *** * *
86564391 ATGTGCCGATGCCATGTCCCAGACACGGTCTTACA-T-TAACACACCTC
1 A-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
* * *
86564438 -GTAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTC
* * * * * *
86564484 GAGGCCAATG-CATGTCCCAAACAT-GTCTTACATTAGCTCTCATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
*
86564530 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
*
86564575 AATGTGGCCGATG-CATGTCTCAGACAT-GTCTTACACT
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
86564612 AGCACACAAA
Statistics
Matches: 331, Mismatches: 61, Indels: 46
0.76 0.14 0.11
Matches are distributed among these distances:
44 8 0.02
45 17 0.05
46 69 0.21
47 62 0.19
48 110 0.33
49 31 0.09
50 28 0.08
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
Found at i:86571957 original size:50 final size:50
Alignment explanation
Indices: 86571883--86572117 Score: 198
Period size: 50 Copynumber: 4.8 Consensus size: 50
86571873 TGCTAGGGAT
*
86571883 ATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGGCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGGCTCGAG
* * * * * *
86571933 ATATGAGAGCTAGTGTAAGACCATGTCTAGGATAGGGAATCA-ACT--TG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGGCTCGAG
* * * * * * *
86571980 ATATGTG-TC-AGTATAAGACCATGTTTGGGACATGGCAT-TGGCACCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGGC-TCGAG
* * * * *
86572028 AGATGAGAGCTAGTGTAAGACCATGTATGAGACATGGTATC-GGCCTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGG-CTCGAG
* * *
86572078 AAATGAGAGTTAGTGTAAGACAATGTCTGGGACAT-GCATC
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
86572118 GACTTTGATG
Statistics
Matches: 143, Mismatches: 34, Indels: 17
0.74 0.18 0.09
Matches are distributed among these distances:
45 24 0.17
46 1 0.01
47 7 0.05
48 5 0.03
49 7 0.05
50 98 0.69
51 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGGCTCGAG
Found at i:86572557 original size:41 final size:41
Alignment explanation
Indices: 86572511--86572594 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
86572501 AGTAGGTCGA
86572511 TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGAT
1 TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGAT
86572552 TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGAT
1 TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGAT
86572593 TA
1 TA
86572595 TGTGTGAGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.42
Consensus pattern (41 bp):
TACCTATGGTGTATAATTATGTGGTAAATTTGATGGATGAT
Found at i:86578018 original size:13 final size:13
Alignment explanation
Indices: 86578000--86578024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86577990 TATGTGATAT
86578000 GTGTGAAAATTTC
1 GTGTGAAAATTTC
86578013 GTGTGAAAATTT
1 GTGTGAAAATTT
86578025 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:86579175 original size:22 final size:22
Alignment explanation
Indices: 86579147--86579211 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
86579137 GCAAATACGT
*
86579147 TTGGCACAAAACCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
86579169 TTGGCACAGAGCCATATAT-AGG
1 TTGGCACAAAGCCATA-ATCAGG
*
86579191 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
86579212 AATAATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:86579683 original size:27 final size:27
Alignment explanation
Indices: 86579639--86579705 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
86579629 TACAAGGGTG
* *
86579639 TTTTGGTAAATCTACAAACCAA-GGTTA
1 TTTTGGTAATTTTACAAACCAACGG-TA
* *
86579666 TTTTGGTAATTTTGCAAACTAACGGTA
1 TTTTGGTAATTTTACAAACCAACGGTA
86579693 TTTCT-GTAATTTT
1 TTT-TGGTAATTTT
86579706 TGAAAGTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 31 0.91
28 3 0.09
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAACGGTA
Found at i:86579759 original size:27 final size:27
Alignment explanation
Indices: 86579671--86580006 Score: 123
Period size: 27 Copynumber: 12.5 Consensus size: 27
86579661 GGTTATTTTG
* * *
86579671 GTAATTTTGCAAACTAACGGTATTTCT
1 GTAATTTTGTAAATTAAGGGTATTTCT
*
86579698 GTAATTTT-TGAAAGTTAAGGGTATTTTT
1 GTAATTTTGT-AAA-TTAAGGGTATTTCT
** * *
86579726 GCCATTTTGTAAATTAGGGGTAGTTCT
1 GTAATTTTGTAAATTAAGGGTATTTCT
** * *
86579753 GTAATTTTCCAAATCAAGGATATTTC-
1 GTAATTTTGTAAATTAAGGGTATTTCT
** * *
86579779 GATAATTTTCCAAATCAGGGGTATTTCT
1 G-TAATTTTGTAAATTAAGGGTATTTCT
* * ** * *
86579807 ATAATGTTACAAATTGAGGGTATTTCA
1 GTAATTTTGTAAATTAAGGGTATTTCT
** * ** *
86579834 GTAATTTTACAAGTCGAGGGTATTTCG
1 GTAATTTTGTAAATTAAGGGTATTTCT
** * *
86579861 GTAATTTTACAAGTCAAGGGTATTTC-
1 GTAATTTTGTAAATTAAGGGTATTTCT
*** *
86579887 GATAATTTCACAAACT-AGGGTATTTC-
1 G-TAATTTTGTAAATTAAGGGTATTTCT
** ** *
86579913 GATAATTTTACAAACCAGGGGTATTT-T
1 G-TAATTTTGTAAATTAAGGGTATTTCT
** *
86579940 GGTAATTTTGCT-AATCGATGGTATTT-T
1 -GTAATTTTG-TAAATTAAGGGTATTTCT
* *
86579967 GGTAATTTTGTAAACTAAGGGTA-TTCA
1 -GTAATTTTGTAAATTAAGGGTATTTCT
86579994 GTAATTTTGTAAA
1 GTAATTTTGTAAA
86580007 CCAAGGGCAT
Statistics
Matches: 247, Mismatches: 50, Indels: 25
0.77 0.16 0.08
Matches are distributed among these distances:
26 42 0.17
27 183 0.74
28 21 0.09
29 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTGTAAATTAAGGGTATTTCT
Found at i:86579799 original size:54 final size:54
Alignment explanation
Indices: 86579736--86579948 Score: 202
Period size: 54 Copynumber: 4.0 Consensus size: 54
86579726 GCCATTTTGT
* * * * *
86579736 AAATTAGGGGTAGTTCTGTAATTTTCCAAATCAAGGATATTTCGATAATTTTCC
1 AAATCAGGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTAC
* * **
86579790 AAATCAGGGGTATTTCTATAATGTTACAAATTGAGGGTATTTC-AGTAATTTTAC
1 AAATCAGGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGA-TAATTTTAC
* * * *
86579844 AAGTC-GAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGATAATTTCAC
1 AAATCAG-GGGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTAC
* * * *
86579898 AAA-CTA-GGGTATTTC-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTT
1 AAATC-AGGGGTATTTCTG-TAATTTTACAAATCAAGGGTATTTCGATAATTTT
86579949 GCTAATCGAT
Statistics
Matches: 129, Mismatches: 24, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 40 0.31
54 87 0.67
55 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
AAATCAGGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTAC
Found at i:86579963 original size:80 final size:80
Alignment explanation
Indices: 86579743--86580001 Score: 222
Period size: 81 Copynumber: 3.2 Consensus size: 80
86579733 TGTAAATTAG
* * * * * * * * * * *
86579743 GGGTAGTTCTGTAATTTTCCAAATCAAGGATATTTCGATAATTTTCCAAATCAGGGGTATTTCTA
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGA
*
86579808 TAATGTTACAAATTGA
66 TAAT-TTACAAACTGA
**
86579824 GGGTATTTCAGTAATTTTACAAGTCGAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGA
86579889 TAATTTCACAAACT-A
66 TAATTT-ACAAACTGA
* * * *
86579904 GGGTATTTC-GATAATTTTACAAACC-AGGGGTATTTTGGTAATTTTGCTAA-TCGATGGTATTT
1 GGGTATTTCAG-TAATTTTACAAACCGA-GGGTATTTCGGTAATTTTAC-AAGTCAAGGGTATTT
* * ** *
86579966 TGGTAATTTTGTAAACTAA
63 CGATAA-TTTACAAACTGA
86579985 GGGTA-TTCAGTAATTTT
1 GGGTATTTCAGTAATTTT
86580002 GTAAACCAAG
Statistics
Matches: 149, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
79 2 0.01
80 71 0.48
81 76 0.51
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGA
TAATTTACAAACTGA
Found at i:86579987 original size:107 final size:108
Alignment explanation
Indices: 86579743--86579991 Score: 260
Period size: 107 Copynumber: 2.3 Consensus size: 108
86579733 TGTAAATTAG
* * * * * *
86579743 GGGTAGTTCTGTAATTTTCCAAATCAAGGATATTTCGATAATTTTCCAAATCAGGGGTATTTCTA
1 GGGTATTTCGGTAATTTTACAACTCAAGGGTATTTCGATAATTTTCCAAATCAGGGGTATTTCGA
**
86579808 TAATGTTACAAATTGAGGGTATTTCAGTAATTTTACAAGTCGA
66 TAATGTTACAAACAGAGGGTATTTCAGTAATTTTACAAGTCGA
*
86579851 GGGTATTTCGGTAATTTTACAAGTCAAGGGTATTTCGATAA-TTTCACAAA-CTA-GGGTATTTC
1 GGGTATTTCGGTAATTTTACAACTCAAGGGTATTTCGATAATTTTC-CAAATC-AGGGGTATTTC
* ** *
86579913 GATAATTTTACAAACCAG-GGGTATTTTGGTAATTTTGCTAA-TCGA
64 GATAATGTTACAAA-CAGAGGGTATTTCAGTAATTTTAC-AAGTCGA
* *
86579958 TGGTATTTTGGTAATTTTGTA-AACT-AAGGGTATT
1 GGGTATTTCGGTAA-TTT-TACAACTCAAGGGTATT
86579992 CAGTAATTTT
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
107 68 0.57
108 50 0.42
109 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (108 bp):
GGGTATTTCGGTAATTTTACAACTCAAGGGTATTTCGATAATTTTCCAAATCAGGGGTATTTCGA
TAATGTTACAAACAGAGGGTATTTCAGTAATTTTACAAGTCGA
Found at i:86580041 original size:27 final size:27
Alignment explanation
Indices: 86580011--86580090 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
86580001 TGTAAACCAA
* *
86580011 GGGCATTTTAATAGTTCTACCCTACAG
1 GGGCATTTCAATAATTCTACCCTACAG
* *
86580038 GGGCATTTCAGTAATTCTATCCTACAG
1 GGGCATTTCAATAATTCTACCCTACAG
* * *
86580065 GGGCATTTCAGTAATACTAGCCTACA
1 GGGCATTTCAATAATTCTACCCTACA
86580091 AATATGAGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (27 bp):
GGGCATTTCAATAATTCTACCCTACAG
Found at i:86587724 original size:6 final size:6
Alignment explanation
Indices: 86587701--86587759 Score: 68
Period size: 6 Copynumber: 10.0 Consensus size: 6
86587691 TTTATCTCGA
* *
86587701 TTTTC- TTTTCT TTGTCT TTTTCT TTCTT-T TTTTCT TGTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT-TTCT TTTTCT TTTTCT TTTTCT
*
86587748 TTTACT TTTTCT
1 TTTTCT TTTTCT
86587760 ACATACTCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
5 7 0.16
6 36 0.80
7 2 0.04
ACGTcount: A:0.02, C:0.17, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTCT
Found at i:86590803 original size:30 final size:30
Alignment explanation
Indices: 86590768--86590848 Score: 135
Period size: 30 Copynumber: 2.7 Consensus size: 30
86590758 TTTACGAGTC
*
86590768 TAGGGGCAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAATTGTAATTTTGACAAAGTT
*
86590798 TAGGGGCAAAATTGTAATTTTGATAAAGTT
1 TAGGGGCAAAATTGTAATTTTGACAAAGTT
*
86590828 TAGGGGCAAAATTATAATTTT
1 TAGGGGCAAAATTGTAATTTT
86590849 TTCAAAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTGACAAAGTT
Found at i:86592321 original size:20 final size:22
Alignment explanation
Indices: 86592292--86592331 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
86592282 ATTGATTTAT
*
86592292 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
86592312 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
86592332 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:86594466 original size:25 final size:25
Alignment explanation
Indices: 86594437--86594484 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
86594427 TTATAATATG
* *
86594437 AAAATGACCATTTTGCCCCTAGGTC
1 AAAATGACCATTATACCCCTAGGTC
86594462 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86594485 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTC
Found at i:86594535 original size:9 final size:9
Alignment explanation
Indices: 86594523--86594579 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86594513 TTTGATAAAC
86594523 ATGATATGT
1 ATGATATGT
*
86594532 ATGATATGCAC
1 ATGATATG--T
*
86594543 ATGACATGT
1 ATGATATGT
*
86594552 ATGATATGCAC
1 ATGATATG--T
86594563 ATGATATGT
1 ATGATATGT
86594572 ATGATATG
1 ATGATATG
86594580 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:86594546 original size:20 final size:20
Alignment explanation
Indices: 86594521--86594591 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
86594511 ATTTTGATAA
86594521 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86594541 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86594561 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86594581 ACATGAGATGT
1 ACATGATATGT
86594592 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86594568 original size:11 final size:11
Alignment explanation
Indices: 86594532--86594586 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
86594522 CATGATATGT
86594532 ATGATATGCAC
1 ATGATATGCAC
* *
86594543 ATGACATG--T
1 ATGATATGCAC
86594552 ATGATATGCAC
1 ATGATATGCAC
*
86594563 ATGATATG--T
1 ATGATATGCAC
86594572 ATGATATGCAC
1 ATGATATGCAC
86594583 ATGA
1 ATGA
86594587 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86594680 original size:23 final size:23
Alignment explanation
Indices: 86594638--86594850 Score: 338
Period size: 24 Copynumber: 9.1 Consensus size: 23
86594628 AGGAAGTGCA
86594638 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
86594660 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86594683 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
86594707 AAAGGGCTTATTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86594730 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
86594754 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
86594778 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
86594801 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
86594824 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
86594848 AAA
1 AAA
86594851 AGAGGCTAGG
Statistics
Matches: 180, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
22 12 0.07
23 79 0.44
24 89 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:86594723 original size:47 final size:46
Alignment explanation
Indices: 86594638--86594871 Score: 337
Period size: 47 Copynumber: 5.0 Consensus size: 46
86594628 AGGAAGTGCA
*
86594638 AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
*
86594683 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
86594730 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT-T
*
86594778 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
* *
86594824 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
86594872 ATGATAAAGC
Statistics
Matches: 173, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
45 12 0.07
46 9 0.05
47 109 0.63
48 32 0.18
49 11 0.06
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:86594785 original size:71 final size:70
Alignment explanation
Indices: 86594636--86594857 Score: 365
Period size: 71 Copynumber: 3.1 Consensus size: 70
86594626 GGAGGAAGTG
* *
86594636 CAAAAGGGCTTA-TGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATTCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
86594700 GTTAT
66 GTTAT
86594705 CAAAAGGGCTTATTCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATTCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCC
86594770 AGTTAT
65 AGTTAT
* *
86594776 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCC
1 CAAAAGGGCTTATTCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCC
86594841 AGTTAT
65 AGTTAT
*
86594847 TAAAAGAGGCT
1 CAAAAG-GGCT
86594858 AGGCCTCCAG
Statistics
Matches: 144, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
69 12 0.08
70 33 0.23
71 94 0.65
72 5 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (70 bp):
CAAAAGGGCTTATTCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
GTTAT
Found at i:86599348 original size:22 final size:22
Alignment explanation
Indices: 86599319--86599362 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
86599309 AGTTTATGCT
* *
86599319 TAAAAAAATATTTG-AAAATAG
1 TAAAAAAAAAGTTGAAAAATAG
86599340 TAAAAAAAAAGTTGAAAAATAG
1 TAAAAAAAAAGTTGAAAAATAG
86599362 T
1 T
86599363 TTGCGTATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (22 bp):
TAAAAAAAAAGTTGAAAAATAG
Found at i:86601158 original size:44 final size:48
Alignment explanation
Indices: 86601095--86601183 Score: 114
Period size: 46 Copynumber: 1.9 Consensus size: 48
86601085 TTCTATTTTT
*
86601095 GAAAACTTATATTCAATTCC-AAATGATT-CCATTTCTCTATTTCAGA
1 GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTCAGA
* * *
86601141 GAAAAC-TATAATC-ATTCCTGAATGTTTCCCATTTCTCTTTTTC
1 GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTC
86601184 TATCCATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 5 0.14
45 12 0.32
46 20 0.54
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (48 bp):
GAAAACTTATAATCAATTCCTAAATGATTCCCATTTCTCTATTTCAGA
Done.