Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 289 of 345
Found at i:86602833 original size:37 final size:37
Alignment explanation
Indices: 86602774--86602995 Score: 327
Period size: 37 Copynumber: 5.9 Consensus size: 37
86602764 AGCTCAGACG
* * *
86602774 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86602811 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * * * *
86602848 TAATCTCCACAAGTAGTCATCGAGACTTTTACCTGGACA
1 AAATCTCCACACGTAGTCATCG-G-GTCTTACCCGGACA
86602887 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
86602924 TAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86602961 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86602996 ATATATTTCC
Statistics
Matches: 167, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
37 134 0.80
38 2 0.01
39 31 0.19
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86602888 original size:76 final size:74
Alignment explanation
Indices: 86602775--86602995 Score: 329
Period size: 76 Copynumber: 3.0 Consensus size: 74
86602765 GCTCAGACGA
* * *
86602775 AATCTCCACATGA-AGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACA-CATAGTCATCGGCTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
86602839 ACCCGGACAT
65 ACCCGGACAT
* *
86602849 AATCTCCACA-AGTAGTCATCGAGACTTTTACCTGGACAAAATCTCCACACGTAGTCATCGGGTC
1 AATCTCCACACA-TAGTCATCG-G-CTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTC
86602913 TTACCCGGACAT
63 TTACCCGGACAT
* *
86602925 AATCTCCACACATAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACATAGTCATCGGCTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
86602990 CCCGGA
66 CCCGGA
86602996 ATATATTTCC
Statistics
Matches: 134, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
72 1 0.01
74 62 0.46
75 2 0.01
76 68 0.51
77 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (74 bp):
AATCTCCACACATAGTCATCGGCTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:86602977 original size:113 final size:113
Alignment explanation
Indices: 86602774--86602982 Score: 364
Period size: 113 Copynumber: 1.8 Consensus size: 113
86602764 AGCTCAGACG
* * *
86602774 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTT
86602839 ACCCGGACATAATCTCCACAAGTAGTCATCGAGACTTTTACCTGGACA
66 ACCCGGACATAATCTCCACAAGTAGTCATCGAGACTTTTACCTGGACA
* *
86602887 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACATAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTT
*
86602952 ACCCGGACATAATCTCCACACGTAGTCATCG
66 ACCCGGACATAATCTCCACAAGTAGTCATCG
86602983 GGTCTTACCC
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 90 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (113 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACATAGTCATCGGGTCTT
ACCCGGACATAATCTCCACAAGTAGTCATCGAGACTTTTACCTGGACA
Found at i:86603209 original size:46 final size:46
Alignment explanation
Indices: 86603141--86603411 Score: 136
Period size: 47 Copynumber: 5.8 Consensus size: 46
86603131 TATATATACA
* * *
86603141 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
86603187 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCTCATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
86603232 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
86603282 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* * *
86603328 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
86603376 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTA
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA
86603412 TCACGTATAT
Statistics
Matches: 196, Mismatches: 18, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
43 3 0.02
44 2 0.01
45 4 0.02
46 39 0.20
47 138 0.70
48 2 0.01
49 5 0.03
51 2 0.01
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:86603266 original size:47 final size:47
Alignment explanation
Indices: 86603205--86603830 Score: 901
Period size: 47 Copynumber: 13.1 Consensus size: 47
86603195 ACACGTTTCG
* * * * **
86603205 CATTAGCCATTCGGCCTTACCTCATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
86603252 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86603299 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
86603346 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
86603393 CATTGGCCATTCGGCCTTATCACGTATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCAC------ACATACGCATGTTCACATTCATCA
*
86603446 CATTCGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
86603493 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
86603546 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
86603593 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
86603640 CATTGGCCATTCGGCCTTATCACAGATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
86603687 CATTGGCCATTCGGCCTTATCTCACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
86603734 CATTGGCCATTCGGCCTCATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
86603781 CATTGGCCATTCGGCCTTATCACACATACGCATGTTGACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86603828 CAT
1 CAT
86603831 AAAATCCTAA
Statistics
Matches: 529, Mismatches: 38, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
47 442 0.84
49 1 0.00
51 1 0.00
53 85 0.16
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:86607777 original size:40 final size:40
Alignment explanation
Indices: 86607733--86607964 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
86607723 CCAGCATGAT
* * * * *
86607733 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86607773 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86607813 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86607853 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
86607893 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
86607933 TGCTCTTCGGGACTTAGCCCTGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
86607965 CTCAATTCTC
Statistics
Matches: 185, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 185 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:86609289 original size:37 final size:37
Alignment explanation
Indices: 86609230--86609410 Score: 317
Period size: 37 Copynumber: 4.9 Consensus size: 37
86609220 AGCTCAGACG
* * *
86609230 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86609267 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86609304 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86609341 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86609378 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
86609411 AATATATTTC
Statistics
Matches: 138, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86609679 original size:47 final size:47
Alignment explanation
Indices: 86609618--86610194 Score: 857
Period size: 47 Copynumber: 12.1 Consensus size: 47
86609608 ACACGTTTCG
* * * * **
86609618 CATTAGCCATTCGGCCTTACCTCATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
86609665 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCAAATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86609712 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86609759 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
86609806 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
86609859 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
86609906 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
86609957 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86610004 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
86610051 CATTGGCCATTTGGCCTTGTCACACATACGCATGTTTACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86610098 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
86610145 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
86610192 CAT
1 CAT
86610195 AAAATCCTAA
Statistics
Matches: 487, Mismatches: 33, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
47 399 0.82
49 1 0.00
51 45 0.09
53 42 0.09
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:86616029 original size:12 final size:13
Alignment explanation
Indices: 86616012--86616049 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
86616002 ATCTTGGAAT
86616012 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
86616024 ATTAAGAACACATA
1 ATTAAGAACA-AGA
86616038 ATTAAGAACAAG
1 ATTAAGAACAAG
86616050 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:86622858 original size:4 final size:5
Alignment explanation
Indices: 86622813--86622860 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
86622803 AAAAGGCAAT
86622813 TAAAA TAAAA TATAGAGA TAAAAA TAAAA TAAAA TAAAA T-AAA TAAAA
1 TAAAA TAAAA TA-A-A-A T-AAAA TAAAA TAAAA TAAAA TAAAA TAAAA
86622861 GGCGTTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
4 4 0.11
5 25 0.66
6 3 0.08
7 2 0.05
8 3 0.08
9 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:86643062 original size:29 final size:28
Alignment explanation
Indices: 86643028--86643130 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
86643018 TACTCAATCA
*
86643028 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
86643057 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
86643086 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
86643115 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86643131 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:86646322 original size:42 final size:42
Alignment explanation
Indices: 86646263--86646384 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
86646253 GTAACTCAAG
* *
86646263 AATCTCGCACATTAAGTGCCAATACATAGCCGAAGCTATCTC
1 AATCTCACACACTAAGTGCCAATACATAGCCGAAGCTATCTC
* * * *
86646305 AAT-TACACACACTAAGTGCCAACT-CATAGTCAAAGCCATCTT
1 AATCT-CACACACTAAGTGCCAA-TACATAGCCGAAGCTATCTC
* * * *
86646347 GATCTCGCACACTAAGTGCC-ATATATAGCTGAAGCTAT
1 AATCTCACACACTAAGTGCCAATACATAGCCGAAGCTAT
86646385 GTAGAATTGC
Statistics
Matches: 63, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
40 1 0.02
41 12 0.19
42 48 0.76
43 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (42 bp):
AATCTCACACACTAAGTGCCAATACATAGCCGAAGCTATCTC
Found at i:86654502 original size:48 final size:48
Alignment explanation
Indices: 86654447--86654542 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
86654437 GCTGCCCTGC
86654447 TTGAGTTCCAAAAATTCTTTCTTTTTCTGATCTATAGACCTTTGACTA
1 TTGAGTTCCAAAAATTCTTTCTTTTTCTGATCTATAGACCTTTGACTA
86654495 TTGAGTTCCAAAAATTCTTTCTTTTTCTGATCTATAGACCTTTGACTA
1 TTGAGTTCCAAAAATTCTTTCTTTTTCTGATCTATAGACCTTTGACTA
86654543 ACATATTTCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (48 bp):
TTGAGTTCCAAAAATTCTTTCTTTTTCTGATCTATAGACCTTTGACTA
Found at i:86658917 original size:39 final size:40
Alignment explanation
Indices: 86658868--86658961 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
86658858 CGGATGTAAC
*
86658868 AACCAGCACGAATGCCTTC-GGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86658907 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
86658947 AACCCGCACGAATGC
1 AACCCGCACGAATGC
86658962 TATGCACATA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 18 0.34
40 35 0.66
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:86669643 original size:40 final size:40
Alignment explanation
Indices: 86669579--86669769 Score: 199
Period size: 39 Copynumber: 4.8 Consensus size: 40
86669569 GCTACTCGTT
* * * ***
86669579 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
86669619 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * * *
86669659 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
86669698 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
86669737 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
86669770 TTCGCACATT
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 89 0.66
40 45 0.34
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:86669704 original size:39 final size:39
Alignment explanation
Indices: 86669617--86669769 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
86669607 TGGTAACCCG
* * *
86669617 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCA
* *
86669657 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
*
86669696 CACCATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
86669735 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
86669770 TTCGCACATT
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 89 0.86
40 15 0.14
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
Found at i:86677600 original size:38 final size:39
Alignment explanation
Indices: 86677503--86677664 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
86677493 TATGGTAACC
* *
86677503 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
86677543 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
86677582 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
86677620 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
86677659 CGCACA
1 CGCACA
86677665 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:86677662 original size:77 final size:78
Alignment explanation
Indices: 86677511--86677666 Score: 269
Period size: 77 Copynumber: 2.0 Consensus size: 78
86677501 CCCGCACAAA
86677511 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
86677576 ATAGCTCGCACAT
66 ACAACTCGCACAT
*
86677589 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
86677653 ACAATTCGCACAT
66 ACAACTCGCACAT
86677666 T
1 T
86677667 CATACACATC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 64 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:86684965 original size:28 final size:28
Alignment explanation
Indices: 86684896--86684996 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
86684886 GACAAGATTG
* * * *
86684896 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
86684926 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86684954 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
86684983 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86684997 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86697566 original size:26 final size:25
Alignment explanation
Indices: 86697498--86697560 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
86697488 GTCTAAGTCG
86697498 GTCATTTACCCTCAAGGGCAAAGCA
1 GTCATTTACCCTCAAGGGCAAAGCA
86697523 GTCATTTACCCTCAAGGGCAAAGCA
1 GTCATTTACCCTCAAGGGCAAAGCA
86697548 GTCATTTTACCCT
1 GTCA-TTTACCCT
86697561 ACAGGGGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 29 0.78
26 8 0.22
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GTCATTTACCCTCAAGGGCAAAGCA
Found at i:86697590 original size:27 final size:27
Alignment explanation
Indices: 86697548--86697612 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
86697538 GGGCAAAGCA
* *
86697548 GTCATTTTACCCTACAGGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
86697575 GTCATTTTACAGTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
86697602 GTAATTTTACA
1 GTCATTTTACA
86697613 AATTGAGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:86697624 original size:27 final size:27
Alignment explanation
Indices: 86697565--86697917 Score: 406
Period size: 27 Copynumber: 13.1 Consensus size: 27
86697555 TACCCTACAG
* * * *
86697565 GGGTATGTCGGTCATTTTAC-AGTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
*
86697592 GGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
86697619 GTGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
86697646 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
86697673 GGATGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
86697700 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
86697727 GGGTGTTTCAGTAATTTTAGAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
86697754 GGGTGTTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
86697781 GGGTGTTTCGGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
86697808 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * *
86697835 GGGTATTTTAGTAATTTCAC-AATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** * *
86697861 GGGTATTTCGACAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATCGA
**
86697888 GGGTA-TTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
86697914 GGGT
1 GGGT
86697918 GTAACACCCC
Statistics
Matches: 288, Mismatches: 36, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
26 41 0.14
27 245 0.85
28 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:86699298 original size:49 final size:49
Alignment explanation
Indices: 86699224--86699412 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
86699214 GTAGCCGAAG
* *
86699224 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * * * *
86699273 TAATCTGGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCACAG
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
* * * *
86699324 TTTTCAGGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
86699373 TTAT-TCGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TTATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA
86699413 CGTGACCTCA
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
49 75 0.65
50 2 0.02
51 38 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:86699404 original size:100 final size:100
Alignment explanation
Indices: 86699230--86699417 Score: 315
Period size: 100 Copynumber: 1.9 Consensus size: 100
86699220 GAAGTTATCT
* *
86699230 GGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
*
86699295 TGCAGTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
* *
86699330 GGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-TCGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT-GGTACACATAGTAGC
86699394 CTGCACTTAGTACTACACACGTGA
65 CTGCACTTAGTACTACACACGTGA
86699418 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 1 0.01
100 81 0.99
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:86703773 original size:27 final size:27
Alignment explanation
Indices: 86703676--86703764 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
86703666 TTTAGTTTAC
* *
86703676 TAAAATTACTGAAATACCCT-TAGTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* *
86703702 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
86703729 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
86703756 TAAAATTAC
1 TAAAATTAC
86703765 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
26 19 0.34
27 37 0.66
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:86703808 original size:26 final size:27
Alignment explanation
Indices: 86703770--86703843 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
86703760 ATTACCAAAG
* **
86703770 TACCCCCGATTTACAGAGTTACTGTTT
1 TACCCCCGATTTACAGAATTACCATTT
*
86703797 TA-CCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACAGAATTACCATTT
*
86703823 TACCCCCGATTTACATAATTA
1 TACCCCCGATTTACAGAATTA
86703844 TTGTAACACC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 22 0.52
27 20 0.48
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCATTT
Found at i:86704597 original size:31 final size:31
Alignment explanation
Indices: 86704556--86704619 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86704546 CCTTTTCATA
*
86704556 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
86704587 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
86704618 TT
1 TT
86704620 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:86704859 original size:23 final size:24
Alignment explanation
Indices: 86704812--86704975 Score: 257
Period size: 23 Copynumber: 7.0 Consensus size: 24
86704802 GCTTTATCAT
*
86704812 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
86704837 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86704860 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86704883 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86704906 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86704930 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86704953 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86704976 TGCACTTCCT
Statistics
Matches: 132, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
23 86 0.65
24 39 0.30
25 7 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86704923 original size:47 final size:47
Alignment explanation
Indices: 86704812--86704975 Score: 262
Period size: 47 Copynumber: 3.5 Consensus size: 47
86704802 GCTTTATCAT
* *
86704812 ATAACTGGAGGCCT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
86704860 ATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
86704906 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
86704953 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86704976 TGCACTTCCT
Statistics
Matches: 111, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
46 33 0.30
47 70 0.63
48 8 0.07
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:86704933 original size:70 final size:69
Alignment explanation
Indices: 86704833--86704974 Score: 250
Period size: 70 Copynumber: 2.0 Consensus size: 69
86704823 CCTAGCCTCT
86704833 TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATA
1 TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
86704897 AGCCC
65 AGCCC
*
86704902 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAACAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
86704967 AGCCC
65 AGCCC
86704972 TTT
1 TTT
86704975 TTGCACTTCC
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
69 15 0.21
70 49 0.70
71 6 0.09
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (69 bp):
TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
GCCC
Found at i:86705048 original size:9 final size:9
Alignment explanation
Indices: 86705034--86705090 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86705024 ATCTCATGTG
86705034 CATATCATA
1 CATATCATA
*
86705043 CATATCATGTG
1 CATATCA--TA
86705054 CATATCATA
1 CATATCATA
* *
86705063 CATGTCATGTG
1 CATATCA--TA
86705074 CATATCATA
1 CATATCATA
86705083 CATATCAT
1 CATATCAT
86705091 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86705050 original size:20 final size:20
Alignment explanation
Indices: 86705022--86705092 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
86705012 GCATTTATGA
*
86705022 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
86705042 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
86705062 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
86705082 ACATATCATGT
1 ACATATCATGT
86705093 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:86705057 original size:11 final size:11
Alignment explanation
Indices: 86705027--86705081 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
86705017 TATGAACATC
86705027 TCATGTGCATA
1 TCATGTGCATA
*
86705038 TCA--TACATA
1 TCATGTGCATA
86705047 TCATGTGCATA
1 TCATGTGCATA
* *
86705058 TCA--TACATG
1 TCATGTGCATA
86705067 TCATGTGCATA
1 TCATGTGCATA
86705078 TCAT
1 TCAT
86705082 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:86705171 original size:25 final size:24
Alignment explanation
Indices: 86705129--86705176 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
86705119 ATATATAAAC
* * *
86705129 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
86705154 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86705177 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:86706364 original size:27 final size:26
Alignment explanation
Indices: 86706334--86706405 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
86706324 GGGCATATTC
86706334 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATA-AAGGGCT-TTACG
* * *
86706361 GTCACTTTACCCTATAGGGCTTTACG
1 GTCATTTTACCATAAAGGGCTTTACG
*
86706387 GTCTTTTTACC-TAATAGGG
1 GTCATTTTACCATAA-AGGG
86706406 GTATTTTAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
25 2 0.05
26 22 0.59
27 13 0.35
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCATAAAGGGCTTTACG
Found at i:86706471 original size:27 final size:27
Alignment explanation
Indices: 86706448--86706666 Score: 176
Period size: 27 Copynumber: 8.0 Consensus size: 27
86706438 TTGGTAAATC
86706448 TACAAACTAAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
** * *
86706475 TGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACTAAGGGTATTTC-AGTAA-TTT
* * *
86706503 TAGAAAGTCAAGGGTATTTCTGTAACTTT
1 TACAAACT-AAGGGTATTTCAGTAA-TTT
* **
86706532 GTA-AATC-AAGGGTATTTTGGTAATTT
1 -TACAAACTAAGGGTATTTCAGTAATTT
* *
86706558 TACAAATTGAGGGTATTTC-GATAATTT
1 TACAAACTAAGGGTATTTCAG-TAATTT
* * **
86706585 CACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* **
86706612 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
*
86706639 TACAAACTAAGGGTATTTTAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
86706666 T
1 T
86706667 GTAAATCGAG
Statistics
Matches: 154, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 6 0.04
27 117 0.76
28 9 0.06
29 18 0.12
30 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACTAAGGGTATTTCAGTAATTT
Found at i:86706664 original size:81 final size:82
Alignment explanation
Indices: 86706428--86706665 Score: 227
Period size: 81 Copynumber: 2.9 Consensus size: 82
86706418 TTTCATCCTA
* * * ** ** * *
86706428 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
* * *
86706493 CTA-TAATTTTTAGAAAGT
66 -TAGTAA-TTTCACAAAGC
* * *
86706511 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AAGGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTA
*
86706573 -TTTCGATAATTTCACAAA-C
63 TTTTAG-TAATTTCACAAAGC
*
86706592 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
86706657 TAGTAATTT
66 TAGTAATTT
86706666 TGTAAATCGA
Statistics
Matches: 125, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
79 2 0.02
80 7 0.06
81 53 0.42
82 13 0.10
83 43 0.34
84 5 0.04
85 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTCACAAAGC
Found at i:86706678 original size:27 final size:27
Alignment explanation
Indices: 86706456--86706734 Score: 163
Period size: 27 Copynumber: 10.3 Consensus size: 27
86706446 TCTACAAACT
* * *
86706456 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
86706483 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* *
86706512 AAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * *
86706539 AAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* * * * *
86706566 GAGGGTA-TTTCGATAATTTCACAAACC
1 AAGGGTATTTTAG-TAATTTTATAAATC
* *
86706593 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
86706619 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
86706646 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
86706674 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
86706701 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
86706728 GAGGGTA
1 AAGGGTA
86706735 AAACGGTAAT
Statistics
Matches: 207, Mismatches: 36, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 6 0.03
27 167 0.81
28 19 0.09
29 15 0.07
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:86706735 original size:27 final size:27
Alignment explanation
Indices: 86706659--86707002 Score: 467
Period size: 27 Copynumber: 12.7 Consensus size: 27
86706649 GGGTATTTTA
* *
86706659 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86706686 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86706713 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
86706740 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86706767 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86706794 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86706821 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
86706848 GTAATTCTGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
86706875 GTAATTCTGTAAATCGGGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86706902 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
86706929 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86706956 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
86706983 ATAATTTTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
86707003 CATTTCAGTA
Statistics
Matches: 287, Mismatches: 26, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
26 2 0.01
27 284 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86708000 original size:27 final size:27
Alignment explanation
Indices: 86707867--86708001 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
86707857 ACAATTATCG
* *
86707867 TTTTACCCTCGACTTACAGAATTA-TCG
1 TTTTACCCTCGATTTACAGAATTACT-A
**
86707894 TTTTACCCTCGATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAGAATTACTA
* *
86707921 TTTTACCCTCAATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
**
86707948 TTTTACCCTTAATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* *
86707975 TTTTACCGTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
86708002 AAATACCCTT
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:86708008 original size:27 final size:27
Alignment explanation
Indices: 86707959--86708199 Score: 114
Period size: 27 Copynumber: 8.9 Consensus size: 27
86707949 TTTACCCTTA
* *** *
86707959 ATTTACAGAATTACTATTTTACCGTCG
1 ATTTACAAAATTACTAAAATACCCTCG
*
86707986 ATTTACAAAATTACTAAAATACCCTTG
1 ATTTACAAAATTACTAAAATACCCTCG
* ** * *
86708013 GTTTGTAAAATTACCAAAATACCC-CT
1 ATTTACAAAATTACTAAAATACCCTCG
** *
86708039 AGTTTGTAAAATTACTAAAATACCCTTG
1 A-TTTACAAAATTACTAAAATACCCTCG
* *** ** *
86708067 GTTTGTGAAATTACCGAAATACCCTCA
1 ATTTACAAAATTACTAAAATACCCTCG
** *
86708094 ATTTGTAAAATTACCAAAATACCC-CTG
1 ATTTACAAAATTACTAAAATACCCTC-G
* *
86708121 ATTTACAAAGTTAC-AGAAATACCCTTG
1 ATTTACAAAATTACTA-AAATACCCTCG
* *
86708148 ACTTT-CTAAAAATTA-TAGAAATACCATTG
1 A-TTTAC--AAAATTACTA-AAATACCCTCG
* *
86708177 GTTTACAAAATTACTGAAATACC
1 ATTTACAAAATTACTAAAATACC
86708200 TTTGGTTTGT
Statistics
Matches: 169, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
26 2 0.01
27 141 0.83
28 7 0.04
29 19 0.11
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTTACAAAATTACTAAAATACCCTCG
Found at i:86708140 original size:54 final size:54
Alignment explanation
Indices: 86707992--86708199 Score: 194
Period size: 54 Copynumber: 3.8 Consensus size: 54
86707982 GTCGATTTAC
*
86707992 AAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAATACCC-CTAGTTTGT
1 AAAATTACTAAAATACCCTTGG-TT-TACAAATTA-CAGAAATACCCTCTAATTTGT
** *
86708046 AAAATTACTAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTC-AATTTGT
1 AAAATTACTAAAATACCCTTGGTTT-ACAAATTACAGAAATACCCTCTAATTTGT
* * * * *
86708100 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCT-TGACTTTCT
1 AAAATTACTAAAATACCCTTGGTTTACAAA-TTACAGAAATACCCTCT-AATTTGT
* *
86708155 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACC
1 -AAAATTACTA-AAATACCCTTGGTTTAC-AAATTACAGAAATACC
86708200 TTTGGTTTGT
Statistics
Matches: 128, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 78 0.61
55 7 0.05
56 33 0.26
57 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGGTTTACAAATTACAGAAATACCCTCTAATTTGT
Found at i:86708204 original size:27 final size:27
Alignment explanation
Indices: 86707991--86708208 Score: 163
Period size: 27 Copynumber: 8.0 Consensus size: 27
86707981 CGTCGATTTA
86707991 CAAAATTACTAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* * * *
86708018 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
*
86708045 TAAAATTACTAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
** ** ***
86708072 TGAAATTACCGAAATACCCTCAATTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* * * * *
86708099 TAAAATTACCAAAATACCCCTGATTTA
1 CAAAATTACTAAAATACCCTTGGTTTG
* *
86708126 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTTG-GTTTG
* *
86708153 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTGGTTTG
* *
86708182 CAAAATTACTGAAATACCTTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
86708209 TTGATTTACC
Statistics
Matches: 155, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 7 0.05
29 19 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTGGTTTG
Found at i:86708294 original size:27 final size:27
Alignment explanation
Indices: 86708259--86708326 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
86708249 ATACCCCTAT
86708259 TAGGGTAAAGTGACCGTAAAGCCCCTG
1 TAGGGTAAAGTGACCGTAAAGCCCCTG
*
86708286 TAGGGTAAAGTGACCGTAATGCCCCTG
1 TAGGGTAAAGTGACCGTAAAGCCCCTG
* *
86708313 TATGGTAAAATGAC
1 TAGGGTAAAGTGAC
86708327 GAATATGCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (27 bp):
TAGGGTAAAGTGACCGTAAAGCCCCTG
Found at i:86708334 original size:27 final size:27
Alignment explanation
Indices: 86708259--86708336 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
86708249 ATACCCCTAT
*
86708259 TAGGGTAAAGTGACCGTAAA-GCCCCTG
1 TAGGGTAAAATGACCG-AAATGCCCCTG
* *
86708286 TAGGGTAAAGTGACCGTAATGCCCCTG
1 TAGGGTAAAATGACCGAAATGCCCCTG
*
86708313 TATGGTAAAATGA-CGAATATGCCC
1 TAGGGTAAAATGACCGAA-ATGCCC
86708337 TTATGTTCCG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.11
27 40 0.89
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (27 bp):
TAGGGTAAAATGACCGAAATGCCCCTG
Found at i:86709158 original size:26 final size:26
Alignment explanation
Indices: 86709129--86709288 Score: 252
Period size: 26 Copynumber: 6.2 Consensus size: 26
86709119 GAGGAAGTGC
*
86709129 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
86709155 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
86709181 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
86709207 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
86709233 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
86709259 AAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
86709283 AAAAGG
1 AAAAGG
86709289 CTAGGCCTCC
Statistics
Matches: 124, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
24 11 0.09
25 8 0.06
26 105 0.85
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:86709207 original size:52 final size:52
Alignment explanation
Indices: 86709129--86709288 Score: 288
Period size: 52 Copynumber: 3.1 Consensus size: 52
86709119 GAGGAAGTGC
86709129 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
86709181 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
86709233 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
86709283 AAAAGG
1 AAAAGG
86709289 CTAGGCCTCC
Statistics
Matches: 105, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
50 12 0.11
51 7 0.07
52 86 0.82
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:86709482 original size:42 final size:42
Alignment explanation
Indices: 86709423--86709558 Score: 236
Period size: 42 Copynumber: 3.2 Consensus size: 42
86709413 TAATCTCCCC
86709423 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
86709465 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
* ** *
86709507 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
86709549 AAATGGGCTT
1 AAATGGGCTT
86709559 ATGGACCATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
Found at i:86709615 original size:31 final size:31
Alignment explanation
Indices: 86709580--86709658 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
86709570 CGTTTACAGT
86709580 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * *
86709611 AAAGGCTTTGGCCCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
86709642 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
86709659 AATCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:86717948 original size:29 final size:27
Alignment explanation
Indices: 86717914--86718016 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86717904 TACTCAATCA
*
86717914 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86717943 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86717972 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86718001 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86718017 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86724025 original size:40 final size:40
Alignment explanation
Indices: 86723965--86724070 Score: 122
Period size: 40 Copynumber: 2.6 Consensus size: 40
86723955 TGCTGGAAAT
* * * * **
86723965 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
86724005 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
86724045 TCTATCCGGGCTAAGACCTGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
86724071 TTTGTGCAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
Found at i:86732032 original size:40 final size:40
Alignment explanation
Indices: 86731926--86732109 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
86731916 TGCTGGAAAT
* * * * * **
86731926 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
86731966 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
86732006 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
86732044 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
86732085 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
86732110 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:86737234 original size:29 final size:27
Alignment explanation
Indices: 86737200--86737302 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
86737190 TACTCAATCA
*
86737200 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
86737229 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
86737258 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
86737287 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
86737303 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:86740084 original size:40 final size:39
Alignment explanation
Indices: 86740035--86740180 Score: 211
Period size: 40 Copynumber: 3.7 Consensus size: 39
86740025 TTGGTAACTT
86740035 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACA-CTC
* *
86740075 GCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTC
* *
86740115 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CACTC
* *
86740155 GCATAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
86740181 AGGTTTCATT
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 95 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACTC
Found at i:86740124 original size:80 final size:80
Alignment explanation
Indices: 86739979--86740180 Score: 235
Period size: 80 Copynumber: 2.5 Consensus size: 80
86739969 TGGAATCTAA
* * * * * * ** *** *
86739979 CCGGATATAACCACAAGCACAATTACCTTCGGGTCTTAACCCAAATTTGGTAACTTGCACAAATG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACAAATG
86740044 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGC
* * * *
86740059 CCGGATATAA-CACCTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAAT
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACAAAT
86740123 GCCTTCGGGTCTTAGC
65 GCCTTCGGGTCTTAGC
*
86740139 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCC
86740181 AGGTTTCATT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 99 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACAAATG
CCTTCGGGTCTTAGC
Found at i:86746894 original size:40 final size:40
Alignment explanation
Indices: 86746850--86747037 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
86746840 ATAACCACAA
* * *** *
86746850 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
*
86746890 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
86746930 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
* * *
86746970 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAA-CAACTC
* *
86747010 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
86747038 GTTTCATTCA
Statistics
Matches: 133, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTC
Found at i:86746979 original size:80 final size:79
Alignment explanation
Indices: 86746834--86747037 Score: 282
Period size: 80 Copynumber: 2.5 Consensus size: 79
86746824 CGGAATCTAA
* * * *** *
86746834 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACAAATG
86746899 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* *
86746914 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAATG
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACAAATG
86746979 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* *
86746994 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
86747038 GTTTCATTCA
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 108 0.98
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACAAATGC
CTTCGGGTCTTAGC
Found at i:86755004 original size:29 final size:29
Alignment explanation
Indices: 86754920--86755028 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
86754910 TTCACATACC
* * * *
86754920 TGTATCTGGCCCATTAAGCTC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
86754948 T-TCATATGGCCCCTTTAGGCCCAAATCACC
1 TGT-ATATGG-CCCATTAGGCCCAAATCACA
86754978 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
86755007 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
86755029 GACACATTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.01
28 6 0.09
29 47 0.70
30 12 0.18
31 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:86755024 original size:58 final size:58
Alignment explanation
Indices: 86754917--86755028 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
86754907 AAATTCACAT
* * * *
86754917 ACCTGTATCTGGCCCATTAAGCTCAATCATATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCCGTTAGGCCCAAATC
* *
86754975 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGG-CCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCCGTTAGGCCCA
86755029 GACACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 33 0.70
59 14 0.30
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCCGTTAGGCCCAAATC
Found at i:86755276 original size:8 final size:8
Alignment explanation
Indices: 86755265--86755294 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
86755255 TGACTTTCAG
86755265 CATTTCGA
1 CATTTCGA
86755273 CATTTCGA
1 CATTTCGA
*
86755281 CATTTCGG
1 CATTTCGA
86755289 CATTTC
1 CATTTC
86755295 AGCTTTTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (8 bp):
CATTTCGA
Found at i:86768561 original size:18 final size:18
Alignment explanation
Indices: 86768538--86768574 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86768528 TATGGTTGTC
86768538 ACTGCAAATCTCACAACA
1 ACTGCAAATCTCACAACA
86768556 ACTGCAAATCTCACAACA
1 ACTGCAAATCTCACAACA
86768574 A
1 A
86768575 AAAGGTAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.16
Consensus pattern (18 bp):
ACTGCAAATCTCACAACA
Found at i:86776038 original size:40 final size:39
Alignment explanation
Indices: 86775973--86776175 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 39
86775963 CGGAATACAA
* *
86775973 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
86776013 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
86776053 CCGGATATAACACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86776092 CCGGATATAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86776132 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
86776172 CCGG
1 CCGG
86776176 GTATCATTCA
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 38 0.27
40 105 0.73
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86776091 original size:79 final size:80
Alignment explanation
Indices: 86775973--86776175 Score: 234
Period size: 79 Copynumber: 2.5 Consensus size: 80
86775963 CGGAATACAA
* * * *
86775973 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGCCCGGATATA-ACGACTTGCACAAA
1 CCGGATATAACCACTA-GCACAAATGCCTTCGGGTATTAGCCCGGATATAGAC-ACTAGCACAAA
*
86776036 TGCCTTCGGGTATTAGC
64 TGCCTTCGGGTATTAAC
* * *
86776053 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTATTAGCCCGGATATAGTCACTAGCACAATTG
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAGACACTAGCACAAATG
*
86776117 CCTTCGGGTCTTAAC
66 CCTTCGGGTATTAAC
** * *
86776132 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCCGG
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTA-TTAGCCCGG
86776176 GTATCATTCA
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
79 68 0.64
80 38 0.36
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAGACACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:86776505 original size:123 final size:123
Alignment explanation
Indices: 86776144--86776604 Score: 834
Period size: 123 Copynumber: 3.8 Consensus size: 123
86776134 GGATATAATT
* * * * * * *
86776144 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86776209 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86776267 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT-CACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86776331 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86776389 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86776454 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86776512 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86776577 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86776605 CACATAATTC
Statistics
Matches: 329, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
122 120 0.36
123 209 0.64
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86783533 original size:40 final size:40
Alignment explanation
Indices: 86783468--86783711 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
86783458 CGGAATACAA
* ** * * *
86783468 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
86783508 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
86783548 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
86783588 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
86783628 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
86783668 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
86783708 CCGG
1 CCGG
86783712 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:86783866 original size:64 final size:64
Alignment explanation
Indices: 86783798--86783990 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
86783788 GAACACAAAC
86783798 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
86783862 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
86783919 AC
63 AT
86783921 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
86783985 ATATCA
1 ATATCA
86783991 ATAATCATTA
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.29
60 7 0.08
61 7 0.08
62 7 0.08
63 7 0.08
64 30 0.36
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.28
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:86783899 original size:123 final size:123
Alignment explanation
Indices: 86783680--86784136 Score: 798
Period size: 123 Copynumber: 3.8 Consensus size: 123
86783670 GGATATAATT
* * * * * * *
86783680 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86783745 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86783803 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86783868 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86783926 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86783991 ATAATCATTACACATCCATATTTCATTTTCGTTACT-A---TCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86784045 ACTAGCATAATTGCCTTC-GGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86784109 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86784137 CACATAATTC
Statistics
Matches: 325, Mismatches: 9, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
118 73 0.22
119 35 0.11
122 1 0.00
123 216 0.66
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86790708 original size:40 final size:40
Alignment explanation
Indices: 86790643--86790847 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
86790633 CGGAATACAA
* * *
86790643 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACGACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
86790683 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86790723 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTAGCACAAATGCCTTCGGGTCTTAGC
* *
86790763 CCGGATATAA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACG--ACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
86790804 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACGACTAGCACAAATGCCTTCGGGTCTTAGC
86790844 CCGG
1 CCGG
86790848 TATCATTCAA
Statistics
Matches: 144, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 110 0.76
41 34 0.24
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACGACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86790813 original size:81 final size:80
Alignment explanation
Indices: 86790643--86790847 Score: 236
Period size: 81 Copynumber: 2.5 Consensus size: 80
86790633 CGGAATACAA
* * * * *
86790643 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGCCCGGATATAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAAT
*
86790707 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
86790723 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCCGGATATAA-GTCACTAGCACAAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
86790787 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** * *
86790804 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCCGG
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTA-TTAGCCCGG
86790848 TATCATTCAA
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 45 0.42
81 61 0.57
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:86791001 original size:64 final size:64
Alignment explanation
Indices: 86790933--86791121 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
86790923 GAACACAAAC
86790933 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
86790997 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
86791054 AC
63 AT
86791056 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
86791120 AT
1 AT
86791122 CAATAATCAT
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:86791034 original size:123 final size:122
Alignment explanation
Indices: 86790816--86791268 Score: 751
Period size: 123 Copynumber: 3.8 Consensus size: 122
86790806 GGATATAATT
* * * * * * *
86790816 ACTAGCATAAATGTCTTCGGGACTTAGCCC-GGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86790880 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATATC
86790938 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86791003 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATATC
86791061 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACAC--ATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86791124 ATAATCATTACACATCCATATTTCA-TTTC--TACTAAGGCTCAA-ACACA-ATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAACACAAACATATC
*
86791176 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86791241 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86791269 CACATAATTC
Statistics
Matches: 317, Mismatches: 10, Indels: 12
0.94 0.03 0.04
Matches are distributed among these distances:
115 62 0.20
116 4 0.01
117 32 0.10
118 13 0.04
120 4 0.01
121 31 0.10
122 28 0.09
123 143 0.45
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (122 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAACACAAACATATC
Found at i:86791244 original size:238 final size:243
Alignment explanation
Indices: 86790816--86791268 Score: 765
Period size: 238 Copynumber: 1.9 Consensus size: 243
86790806 GGATATAATT
* * * * *
86790816 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGTATCATTCAATTGCTCATGCACACATAAATCAA
1 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGTACCATTCAAATACTCATACACACAT-AATCAA
86790881 TAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATCACTAGCAT
65 TAATCATTACACATCCATATTTCATTTTCG-TACTAAGGCTCGAACACAAACATATCACTAGCAT
86790946 AATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCAT
129 AATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCAT
86791011 TACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
194 TACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86791061 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT-ATCAA
1 ACTAGCATAAATGCCTTCGGGACTTAGCCC-GGTACCATTCAAATACTCATACACACATAATCAA
*
86791125 TAATCATTACACATCCATATTTCA-TTTC-TACTAAGGCTC-AA-ACACA-ATATCACTAGCATA
65 TAATCATTACACATCCATATTTCATTTTCGTACTAAGGCTCGAACACAAACATATCACTAGCATA
*
86791185 ATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCAATAATCATT
130 ATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATT
86791250 ACACATCCATATTTCATTT
195 ACACATCCATATTTCATTT
86791269 CACATAATTC
Statistics
Matches: 199, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
238 97 0.49
239 4 0.02
240 2 0.01
241 11 0.06
243 4 0.02
244 29 0.15
245 28 0.14
246 24 0.12
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (243 bp):
ACTAGCATAAATGCCTTCGGGACTTAGCCCGGTACCATTCAAATACTCATACACACATAATCAAT
AATCATTACACATCCATATTTCATTTTCGTACTAAGGCTCGAACACAAACATATCACTAGCATAA
TTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTA
CACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86797847 original size:40 final size:39
Alignment explanation
Indices: 86797782--86797985 Score: 230
Period size: 40 Copynumber: 5.1 Consensus size: 39
86797772 CGGAATACAA
* *
86797782 CCGGATATAAACAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATAT-AACACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
86797822 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
86797862 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86797902 CCGGATATAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86797942 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
86797982 CCGG
1 CCGG
86797986 GTATCATTCA
Statistics
Matches: 143, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 139 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86798295 original size:245 final size:243
Alignment explanation
Indices: 86797954--86798411 Score: 819
Period size: 245 Copynumber: 1.9 Consensus size: 243
86797944 GGATATAATT
* * * *
86797954 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATGCTCATGCACACATAATCAAT
1 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTACCATTCAATACTCATACACACATAATCAAT
*
86798019 AATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATCACTAGCATA
66 AATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATA
86798084 ATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT-CACACATATATCAATAATCATT
131 ATTGCCTTCGGGACTTAG-CCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATT
86798148 ACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
195 ACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86798197 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTACCATTC-AATACTCATACACACATA-ATCA
86798262 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCA
64 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCA
*
86798327 TAATTGCCTTCGGGACTTAGCCGGGTACCATTCAAATACTCATACACACATATGTCAATAATCAT
129 TAATTGCCTTCGGGACTTAGCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCAT
86798392 TACACATCCATATTTCATTT
194 TACACATCCATATTTCATTT
86798412 CACATAATTC
Statistics
Matches: 205, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
243 38 0.19
244 39 0.19
245 128 0.62
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.30
Consensus pattern (243 bp):
ACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTACCATTCAATACTCATACACACATAATCAAT
AATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCACTAGCATA
ATTGCCTTCGGGACTTAGCCGGGTACCATTCAAATACTCATACACACATATATCAATAATCATTA
CACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86798313 original size:123 final size:123
Alignment explanation
Indices: 86797954--86798411 Score: 825
Period size: 122 Copynumber: 3.8 Consensus size: 123
86797944 GGATATAATT
* * * * *
86797954 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTC-AATGCTCATGCACACATA-ATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
86798017 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86798075 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT-CACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86798139 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86798197 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86798262 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86798320 ACTAGCATAATTGCCTTCGGGACTTAG-CCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86798384 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86798412 CACATAATTC
Statistics
Matches: 328, Mismatches: 6, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
121 46 0.14
122 184 0.56
123 98 0.30
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86805338 original size:40 final size:39
Alignment explanation
Indices: 86805294--86805474 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 39
86805284 CACACGGACG
* *
86805294 AATGCCCTCGGGTCTTAGCCCGGATATAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTAGCACA
* *
86805334 AATGCCTTCGGGTATTAGCCCGGATATAACAACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTAGCACA
* * *
86805374 AATGCCTTCGGGTATTAGCCCGGATATAGTCACTACCACA
1 AATGCCTTCGGGTCTTAGCCCGGATATA-ACACTAGCACA
* * * *
86805414 ATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATA
1 AATGCCTTCGGGTCTTAGCCCGGATATAA-CACTAGCACA
* *
86805454 AATGTCTTCGGGACTTAGCCC
1 AATGCCTTCGGGTCTTAGCCC
86805475 TGGTTTCATT
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 121 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATATAACACTAGCACA
Found at i:86805664 original size:123 final size:123
Alignment explanation
Indices: 86805445--86805906 Score: 827
Period size: 123 Copynumber: 3.8 Consensus size: 123
86805435 GGATATAATT
* * * ** * *
86805445 ACTAGCATAAATGTCTTCGGGACTTAGCCCTGGTTTCATTC-AATAACTCATGCACACATAAATC
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAAT-ACTCATACACACATATATC
*
86805509 AATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
65 AATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86805568 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86805633 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
86805691 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86805756 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
86805814 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
86805879 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
86805907 CACATAATTC
Statistics
Matches: 329, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
123 326 0.99
124 3 0.01
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:86807631 original size:25 final size:25
Alignment explanation
Indices: 86807603--86807682 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
86807593 CTCTTATGAT
*
86807603 CTTACTGATATTCAGCTCGGAGGAG
1 CTTACTGATATTCAACTCGGAGGAG
* * *
86807628 CTTAC-CATTATTTAACTTGGAGGAG
1 CTTACTGA-TATTCAACTCGGAGGAG
* * *
86807653 CTTACTGTTATTCAACTCAGAGAAG
1 CTTACTGATATTCAACTCGGAGGAG
86807678 CTTAC
1 CTTAC
86807683 CGTTTATAGC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.02
25 42 0.98
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
CTTACTGATATTCAACTCGGAGGAG
Found at i:86808724 original size:26 final size:26
Alignment explanation
Indices: 86808687--86808796 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
86808677 TGATACAAAT
86808687 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86808713 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86808739 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86808765 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86808791 TGATAA
1 TGATAA
86808797 GAATATCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:86808744 original size:52 final size:52
Alignment explanation
Indices: 86808687--86808796 Score: 220
Period size: 52 Copynumber: 2.1 Consensus size: 52
86808677 TGATACAAAT
86808687 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
86808739 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
86808791 TGATAA
1 TGATAA
86808797 GAATATCATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:86810557 original size:21 final size:21
Alignment explanation
Indices: 86810531--86810578 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
86810521 ATTCCCCACA
86810531 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
86810552 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
86810573 TTGAGT
1 TGGAGT
86810579 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:86810831 original size:137 final size:137
Alignment explanation
Indices: 86810585--86811008 Score: 812
Period size: 137 Copynumber: 3.1 Consensus size: 137
86810575 GAGTAGTCTC
86810585 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
86810650 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
86810715 ACTGTTA
131 ACTGTTA
86810722 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
86810787 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
86810852 ACTGTTA
131 ACTGTTA
86810859 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
86810924 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
86810989 ACTGTTA
131 ACTGTTA
**
86810996 CCTGAATGGGCTT
1 CCCAAATGGGCTT
86811009 AGGCCCAATA
Statistics
Matches: 282, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 282 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:86815613 original size:24 final size:23
Alignment explanation
Indices: 86815581--86815689 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
86815571 ACCAAACGTT
* **
86815581 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
86815605 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
86815629 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
86815653 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
86815677 GCACACATAGTGC
1 GCACACATAGTGC
86815690 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:86815655 original size:48 final size:48
Alignment explanation
Indices: 86815581--86815689 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
86815571 ACCAAACGTT
* **
86815581 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
86815629 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
86815677 GCACACATAGTGC
1 GCACACATAGTGC
86815690 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:86817445 original size:43 final size:43
Alignment explanation
Indices: 86817397--86817480 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
86817387 TGAGATATGT
*
86817397 AGCAT-CTGAGCTCGTTGAGAAGT-TCGAGTTCATTATGGATGCG
1 AGCATCCT-AGCTCGTTGAGAGGTCT-GAGTTCATTATGGATGCG
* * *
86817440 AGCATCCTAGCTTGTTGAGTGGTCTGATTTCATTATGGATG
1 AGCATCCTAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
86817481 TGTTACATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
43 32 0.91
44 3 0.09
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (43 bp):
AGCATCCTAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCG
Found at i:86831556 original size:26 final size:26
Alignment explanation
Indices: 86831526--86831598 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
86831516 CTCTTTTAAT
*
86831526 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
* * **
86831552 AACTGAGGCATAAACATTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
86831578 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86831599 GCACTTCCTC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:86831699 original size:20 final size:20
Alignment explanation
Indices: 86831648--86831704 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
86831638 TTATGAATAC
*
86831648 ATCATGTGCAGATCATACAT
1 ATCATGTGCATATCATACAT
* * ** *
86831668 ATCATATACATATTGTACGT
1 ATCATGTGCATATCATACAT
86831688 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
86831705 TCAATATTGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86839167 original size:26 final size:26
Alignment explanation
Indices: 86839137--86839209 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
86839127 CTCTTTTAAT
*
86839137 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
* **
86839163 AACTGGGGCATAAACATTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
86839189 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86839210 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:86839310 original size:20 final size:20
Alignment explanation
Indices: 86839259--86839315 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
86839249 TTATGAATAC
*
86839259 ATCATGTGCAGATCATACAT
1 ATCATGTGCATATCATACAT
* * ** *
86839279 ATCATATACATATTGTACGT
1 ATCATGTGCATATCATACAT
86839299 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
86839316 TCAATATTGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86845765 original size:21 final size:20
Alignment explanation
Indices: 86845736--86845774 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
86845726 AATTTTATGC
*
86845736 AATTTAGCTCATAGTTTTAGT
1 AATTAAGCTCAT-GTTTTAGT
*
86845757 AATTAAGCTGATGTTTTA
1 AATTAAGCTCATGTTTTA
86845775 TGACAGTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTAAGCTCATGTTTTAGT
Found at i:86854205 original size:43 final size:43
Alignment explanation
Indices: 86854145--86854228 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
86854135 TGAGGTATGT
*
86854145 AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCC
1 AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCC
* * *
86854188 AGCATCCGAGCTTGTTGAGTGGTCCGAGTTCATGATGGATG
1 AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATG
86854229 TGATTCATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.27
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCC
Found at i:86861565 original size:28 final size:27
Alignment explanation
Indices: 86861513--86861567 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
86861503 ATTTTGAGAA
86861513 ATATGATTAAATTTGCTACACAACTTTT
1 ATATGATTAAATTT-CTACACAACTTTT
*
86861541 ATATTATTAAATTT-TACAACTAACTTT
1 ATATGATTAAATTTCTAC-AC-AACTTT
86861568 GAATTTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 3 0.12
27 2 0.08
28 19 0.79
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (27 bp):
ATATGATTAAATTTCTACACAACTTTT
Found at i:86873652 original size:22 final size:22
Alignment explanation
Indices: 86873627--86873671 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
86873617 TAGAGAAGAA
86873627 AGATAGATCATTGAGATTATGC
1 AGATAGATCATTGAGATTATGC
*
86873649 AGATGGATCATTGAGATTATGC
1 AGATAGATCATTGAGATTATGC
86873671 A
1 A
86873672 TTGATTACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (22 bp):
AGATAGATCATTGAGATTATGC
Found at i:86878403 original size:46 final size:46
Alignment explanation
Indices: 86878346--86878614 Score: 222
Period size: 47 Copynumber: 5.7 Consensus size: 46
86878336 AATCGTGTGT
* * ***
86878346 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACCTTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
* * * * * *
86878392 GAGCCAGTGTAAGACCATATTTGGGATATGGCATC-GACATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGA
* * *
86878440 GAGCTAGTGTAAGTCATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-A
* *
86878487 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
* * * **
86878532 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGA
* *
86878578 TGAGCCAGTATAAGACCATGTCTAGGACATGACATCG
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCG
86878615 ACACCTTACC
Statistics
Matches: 180, Mismatches: 32, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 76 0.42
47 78 0.43
48 25 0.14
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
Found at i:86878567 original size:94 final size:92
Alignment explanation
Indices: 86878346--86878617 Score: 282
Period size: 94 Copynumber: 2.9 Consensus size: 92
86878336 AATCGTGTGT
* ***
86878346 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACCTTATG-AGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATGTA-AGCCAGTGTAAGACCAT
* * *
86878410 ATTTGGGATATGGCATCGACATTGAGACGA
64 GTCTGGGACAT-GCATCGACATTGAGACGA
*
86878440 GAGCTAGTGTAAGTCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATGTAAGCCAGTGTAAGACCATG
* *
86878504 TCTGGGACATGCATCGGC-TATGAGATGA
65 TCTGGGACATGCATCGACAT-TGAGACGA
* * * * * *
86878532 TAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAGCCAGTATAAGACCA
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTCGAGATGTAAGCCAGTGTAAGACCA
*
86878596 TGTCTAGGACATGACATCGACA
63 TGTCTGGGACATG-CATCGACA
86878618 CCTTACCCAT
Statistics
Matches: 150, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
91 2 0.01
92 24 0.16
93 46 0.31
94 71 0.47
95 7 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (92 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGTAAGCCAGTGTAAGACCATGT
CTGGGACATGCATCGACATTGAGACGA
Found at i:86878606 original size:140 final size:141
Alignment explanation
Indices: 86878351--86878614 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 141
86878341 TGTGTGAGCT
** *
86878351 AGTGTAAGACATGTCTGGGACATGCATCAGCCACCTTATGAGAGCCAGTGTAAGACCATATTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACCAGATGAGAGCCAGTGTAAGACCATATCTGG
* * * * *
86878416 GATATGGCATCGACATTGAGACGAGAGCTAGTGTAAGTCATGTCTGGGACATG-CATCGGCCTCG
66 GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGCCATGTCTAGGACATGACATCGGCCTCG
86878480 AGATGTAAGCC
131 AGATGTAAGCC
* * ** * * *
86878491 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACCAGATGAGAGCCAGTGTAAGACCATATCTGG
*
86878556 GACATGGCATCGAC-TTGAGA-TATGAGCCAGTATAAGACCATGTCTAGGACATGACATCG
66 GACATGGCATCGACATTGAGACGA-GAGCCAGTATAAG-CCATGTCTAGGACATGACATCG
86878615 ACACCTTACC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 82 0.78
141 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACCAGATGAGAGCCAGTGTAAGACCATATCTGG
GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGCCATGTCTAGGACATGACATCGGCCTCG
AGATGTAAGCC
Found at i:86881379 original size:28 final size:27
Alignment explanation
Indices: 86881316--86881385 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86881306 ATAGTGAGTC
*
86881316 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
86881343 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
86881371 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86881386 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86883949 original size:21 final size:20
Alignment explanation
Indices: 86883921--86883959 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
86883911 TAGTACACGG
* *
86883921 CCTAACCACATGGGTGTGCC
1 CCTAACCAAACGGGTGTGCC
86883941 CCTAGACCAAACGGGTGTG
1 CCTA-ACCAAACGGGTGTG
86883960 TGAGCCTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (20 bp):
CCTAACCAAACGGGTGTGCC
Found at i:86886715 original size:11 final size:11
Alignment explanation
Indices: 86886699--86886732 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
86886689 ATGTCAAATC
*
86886699 ATCAAGAATAA
1 ATCAAGAACAA
86886710 ATCAAGAACAA
1 ATCAAGAACAA
86886721 ATCAAGAACAA
1 ATCAAGAACAA
86886732 A
1 A
86886733 ACTAGATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.65, C:0.15, G:0.09, T:0.12
Consensus pattern (11 bp):
ATCAAGAACAA
Found at i:86891937 original size:11 final size:11
Alignment explanation
Indices: 86891921--86891955 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
86891911 CATGTCAAAT
86891921 AATCAAGAATA
1 AATCAAGAATA
*
86891932 AATCAAGAACA
1 AATCAAGAATA
86891943 AATCAAGAATA
1 AATCAAGAATA
86891954 AA
1 AA
86891956 ACTAGATGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.66, C:0.11, G:0.09, T:0.14
Consensus pattern (11 bp):
AATCAAGAATA
Found at i:86894088 original size:10 final size:10
Alignment explanation
Indices: 86894075--86894099 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86894065 CTTAATGTGG
86894075 TATTTATTGT
1 TATTTATTGT
86894085 TATTTATTGT
1 TATTTATTGT
86894095 TATTT
1 TATTT
86894100 GGTGTTAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
TATTTATTGT
Found at i:86894485 original size:162 final size:162
Alignment explanation
Indices: 86894218--86894526 Score: 444
Period size: 162 Copynumber: 1.9 Consensus size: 162
86894208 AAAATTATGA
*
86894218 TTTTAATGATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTTTTAAATAAACAATT
1 TTTTAATGATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTGTTAAATAAACAATT
* *
86894283 TAAAGGTGGTCGAATGAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATGG
66 TAAAAGTGGTCGAATGAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATAG
86894348 TTGACCAAATAATTGTACGCTGATATTTATAC
131 TTGACCAAATAATTGTACGCTGATATTTATAC
*** * ***
86894380 TTTTAATGATTAAATTGATATTTAA-ACTTG-TGGGTTGGCTTATTTCAATTGTTAAATAAGTGA
1 TTTTAATGATTAAATTGATATTTAAGA-TTGCT-GGTCACCTTATTTAAATTGTTAAATAAACAA
* ** *
86894443 TTTAAAAGTGG-CTGAATTAGGTATGTTTTGAGCCTAACTAATTAGCATGAATACAAAACTAGTA
64 TTTAAAAGTGGTC-GAATGAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTA
86894507 TAGTTGACCAAATAATTGTA
128 TAGTTGACCAAATAATTGTA
86894527 TGTTCATATT
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
161 3 0.02
162 127 0.98
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (162 bp):
TTTTAATGATTAAATTGATATTTAAGATTGCTGGTCACCTTATTTAAATTGTTAAATAAACAATT
TAAAAGTGGTCGAATGAGGTACATTTCGAGCCTAACTAATTAGCATGAATACAAAACTAGTATAG
TTGACCAAATAATTGTACGCTGATATTTATAC
Found at i:86899120 original size:27 final size:27
Alignment explanation
Indices: 86899089--86899209 Score: 138
Period size: 27 Copynumber: 4.5 Consensus size: 27
86899079 TTTGAAAAAA
86899089 GAAGCCTTTGTGGCAATCTATGAAATG
1 GAAGCCTTTGTGGCAATCTATGAAATG
* * *
86899116 GAAGCCTTTATGGAAATCGATGAAATG
1 GAAGCCTTTGTGGCAATCTATGAAATG
*
86899143 GAAGCTTTTGTGGCAATCTATGAAATG
1 GAAGCCTTTGTGGCAATCTATGAAATG
* ** *
86899170 GAAGGCTTTACGGCAAT-TGTGAAATAG
1 GAAGCCTTTGTGGCAATCTATGAAAT-G
*
86899197 G-AGCTTTTGTGGC
1 GAAGCCTTTGTGGC
86899210 GATCCATGGA
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 15 0.19
27 62 0.81
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (27 bp):
GAAGCCTTTGTGGCAATCTATGAAATG
Found at i:86899164 original size:54 final size:54
Alignment explanation
Indices: 86899089--86899209 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
86899079 TTTGAAAAAA
* *
86899089 GAAGCCTTTGTGGCAATCTATGAAATGGAAGCCTTTATGGAAATCGATGAAAT-G
1 GAAGCTTTTGTGGCAATCTATGAAATGGAAGCCTTTACGGAAATCG-TGAAATAG
* * *
86899143 GAAGCTTTTGTGGCAATCTATGAAATGGAAGGCTTTACGGCAATTGTGAAATAG
1 GAAGCTTTTGTGGCAATCTATGAAATGGAAGCCTTTACGGAAATCGTGAAATAG
86899197 G-AGCTTTTGTGGC
1 GAAGCTTTTGTGGC
86899210 GATCCATGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
53 18 0.30
54 43 0.70
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (54 bp):
GAAGCTTTTGTGGCAATCTATGAAATGGAAGCCTTTACGGAAATCGTGAAATAG
Found at i:86905927 original size:39 final size:40
Alignment explanation
Indices: 86905801--86905929 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
86905791 ATGCTGGAAA
* *
86905801 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
86905841 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
86905881 TTCTATCCGGGCTAAGA-CCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
86905920 TTATATCCGG
1 TTATATCCGG
86905930 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 30 0.40
40 44 0.59
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:86913609 original size:15 final size:15
Alignment explanation
Indices: 86913570--86913649 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
86913560 GTATCTTGGG
*
86913570 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
86913585 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
86913600 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
86913615 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
86913630 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
86913644 TTTCTT
1 TTTCTT
86913650 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86913639 original size:30 final size:30
Alignment explanation
Indices: 86913561--86913648 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
86913551 CATAGTATCG
* * *
86913561 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
86913591 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
86913621 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
86913649 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:86916073 original size:46 final size:46
Alignment explanation
Indices: 86916018--86916198 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
86916008 TAGGATGGTT
86916018 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
86916064 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
86916110 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
86916157 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86916199 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:86916179 original size:93 final size:93
Alignment explanation
Indices: 86916020--86916190 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
86916010 GGATGGTTGA
* *
86916020 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86916085 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
86916113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
86916178 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
86916191 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86922045 original size:40 final size:40
Alignment explanation
Indices: 86921988--86922151 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
86921978 TGAATGATAC
* * * *
86921988 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
86922028 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
86922068 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
86922108 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
86922148 CCGG
1 CCGG
86922152 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:86931903 original size:96 final size:96
Alignment explanation
Indices: 86931777--86931988 Score: 327
Period size: 96 Copynumber: 2.2 Consensus size: 96
86931767 TATCGATTCC
*
86931777 ATGTCCCAGGA-ATGGTCTTATACGAAATCACTTATTGATGCCGAAGCCATATCCCTGATATGGT
1 ATGTCCCA-GACATGGTCTTATACGAAATCACTTATTGACGCCGAAGCCATATCCCTGATATGGT
*
86931841 CTTACACGGGATCGTGTATCGATGCCGATGCA
65 CTTACACGGGATCGCGTATCGATGCCGATGCA
* * * *
86931873 ATGTCCCAGACATGGGCTTATACGTAATCACTTATTGACGCTGAAGCCATATCCTTGATATGGTC
1 ATGTCCCAGACATGGTCTTATACGAAATCACTTATTGACGCCGAAGCCATATCCCTGATATGGTC
* * *
86931938 TTACATGGGATCGCGTATCGATGCTGATGCC
66 TTACACGGGATCGCGTATCGATGCCGATGCA
86931969 ATGTCCCAGACATGGTCTTA
1 ATGTCCCAGACATGGTCTTA
86931989 CATGAGATCT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
95 2 0.02
96 103 0.98
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTATACGAAATCACTTATTGACGCCGAAGCCATATCCCTGATATGGTC
TTACACGGGATCGCGTATCGATGCCGATGCA
Found at i:86931992 original size:48 final size:48
Alignment explanation
Indices: 86931813--86931990 Score: 158
Period size: 48 Copynumber: 3.7 Consensus size: 48
86931803 ATCACTTATT
* * *
86931813 GATGCCGAAGCCATATCCCTGATATGGTCTTACACGGGATCGTGTATC
1 GATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATCGCGTATC
* * * * * ** * * *
86931861 GATGCCGATGCAATGTCCCAGACATGGGCTTATACGTAATCACTTATT
1 GATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATCGCGTATC
* * ** * *
86931909 GACGCTGAAGCCATATCCTTGATATGGTCTTACATGGGATCGCGTATC
1 GATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATCGCGTATC
* * *
86931957 GATGCTGATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCGAAGCCATATCCCAGACATGGTCTTACA
86931991 TGAGATCTAG
Statistics
Matches: 95, Mismatches: 35, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (48 bp):
GATGCCGAAGCCATATCCCAGACATGGTCTTACACGGGATCGCGTATC
Found at i:86934450 original size:11 final size:11
Alignment explanation
Indices: 86934434--86934468 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
86934424 GGAAGAGAGG
86934434 TTGATTTTTGC
1 TTGATTTTTGC
*
86934445 TTGATTTTAGC
1 TTGATTTTTGC
*
86934456 TTGATTCTTGC
1 TTGATTTTTGC
86934467 TT
1 TT
86934469 AACTGAAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (11 bp):
TTGATTTTTGC
Found at i:86938274 original size:49 final size:49
Alignment explanation
Indices: 86938158--86938282 Score: 146
Period size: 50 Copynumber: 2.5 Consensus size: 49
86938148 ACGAGATGTT
* * *
86938158 TCAGTGTAAGATCATGTCTAGGACATGGCATTGGCATGGATATGTGAGAG
1 TCAGTGTAAGACCATGTCT-GGACATGGCATCGGCATCGATATGTGAGAG
* * * *
86938208 -CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-TTTGATAG
1 TC-AGTGTAAGACCATGTCT-GGACATGGCATCGGCATCGATATGTGAGAG
86938257 TCAGTGTAAGACCATGTCTGGACATG
1 TCAGTGTAAGACCATGTCTGGACATG
86938283 ACATGATTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 7 0.11
49 24 0.37
50 34 0.52
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (49 bp):
TCAGTGTAAGACCATGTCTGGACATGGCATCGGCATCGATATGTGAGAG
Found at i:86941077 original size:49 final size:48
Alignment explanation
Indices: 86940960--86941085 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 48
86940950 TATTTGTGTA
86940960 CCAGTGTAAGACATGTCTGGGACAT-GCAT-TGGCCTCGACATGTAAG
1 CCAGTGTAAGACATGTCTGGGACATGGCATCTGGCCTCGACATGTAAG
**
86941006 CCAGTGTAAGACATGTCTGGGACATGGCATCT-GCCTCGATTTCG-ATAG
1 CCAGTGTAAGACATGTCTGGGACATGGCATCTGGCCTCGACAT-GTA-AG
* *
86941054 TCAGTATAAGACCATGTCTGGGACATGGCATC
1 CCAGTGTAAGA-CATGTCTGGGACATGGCATC
86941086 GTTTTGATGG
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
46 25 0.35
47 13 0.18
48 13 0.18
49 20 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (48 bp):
CCAGTGTAAGACATGTCTGGGACATGGCATCTGGCCTCGACATGTAAG
Found at i:86949938 original size:18 final size:18
Alignment explanation
Indices: 86949915--86949985 Score: 81
Period size: 18 Copynumber: 3.9 Consensus size: 18
86949905 AGGATGTGTC
86949915 ATTCATTTTCAAAACGTT
1 ATTCATTTTCAAAACGTT
* *
86949933 ATTCATTATCAAAAAGTT
1 ATTCATTTTCAAAACGTT
* *
86949951 ATAC-TCTTTCAAAACATT
1 ATTCAT-TTTCAAAACGTT
*
86949969 ATTAATTTTCAAAACGT
1 ATTCATTTTCAAAACGT
86949986 CACTTATTGC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 40 0.95
19 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.41
Consensus pattern (18 bp):
ATTCATTTTCAAAACGTT
Found at i:86950966 original size:17 final size:17
Alignment explanation
Indices: 86950941--86950979 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
86950931 ATCCCATGTA
86950941 GGCCCACACG-CCTGTGT
1 GGCCCACACGCCCT-TGT
*
86950958 GGCCTACACGCCCTTGT
1 GGCCCACACGCCCTTGT
86950975 GGCCC
1 GGCCC
86950980 CTACGACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.10, C:0.44, G:0.28, T:0.18
Consensus pattern (17 bp):
GGCCCACACGCCCTTGT
Found at i:86951908 original size:24 final size:22
Alignment explanation
Indices: 86951864--86951910 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
86951854 AACTCTAAAC
* *
86951864 ATATCCCTAAAAATTCTCCACA
1 ATATCCCCAAAAATTCGCCACA
86951886 ATATCCTCCAAAAATTCGGCCACA
1 ATATCC-CCAAAAATTC-GCCACA
86951910 A
1 A
86951911 CAACCCCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.23
Consensus pattern (22 bp):
ATATCCCCAAAAATTCGCCACA
Found at i:86954446 original size:6 final size:6
Alignment explanation
Indices: 86954428--86954577 Score: 76
Period size: 6 Copynumber: 24.3 Consensus size: 6
86954418 AAGAAACATT
* * *
86954428 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATTAG- GTCACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * * *
86954477 ATTAGA ATCAGT ATCAGGTA A-CCGA ATCAAA ATCAAA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
86954528 A-CAGA ATCAAA ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA
86954576 AT
1 AT
86954578 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 20, Indels: 28
0.70 0.13 0.18
Matches are distributed among these distances:
5 8 0.07
6 87 0.79
7 11 0.10
8 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:86954473 original size:31 final size:31
Alignment explanation
Indices: 86954437--86954577 Score: 192
Period size: 31 Copynumber: 4.5 Consensus size: 31
86954427 TATCAGAACT
* * * * *
86954437 AGAATCAGAATCAGAATTAGAATTAGGTCAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
86954468 AGAATCAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
86954499 CGAATCAAAATCAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
86954530 AGAATCAAAATCAGAATCAGTATCAAGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
86954561 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
86954578 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Done.