Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 292 of 345
Found at i:87728595 original size:42 final size:42
Alignment explanation
Indices: 87728536--87728619 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
87728526 AAAAGGAATC
87728536 AAGTAGACCCATAACCTCCTTAACCCAATGACCAATAATAGT
1 AAGTAGACCCATAACCTCCTTAACCCAATGACCAATAATAGT
*
87728578 AAGTAGACCCATAACCTCCTTAACCCAATGACCAGTAATAGT
1 AAGTAGACCCATAACCTCCTTAACCCAATGACCAATAATAGT
87728620 GGCATTCTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (42 bp):
AAGTAGACCCATAACCTCCTTAACCCAATGACCAATAATAGT
Found at i:87732071 original size:68 final size:68
Alignment explanation
Indices: 87731976--87732133 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
87731966 TTCACTTGGA
* *
87731976 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
87732041 CGT
66 CGT
87732044 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
87732109 CGT
66 CGT
87732112 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
87732134 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:87732150 original size:68 final size:67
Alignment explanation
Indices: 87731976--87732159 Score: 264
Period size: 68 Copynumber: 2.7 Consensus size: 67
87731966 TTCACTTGGA
* * *
87731976 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCC
87732041 CGT
65 CGT
*
87732044 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCC
87732109 CGT
65 CGT
*
87732112 ATCACACATGTGACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTAC-ATTTA-TATCTACGTAGCTC-TCTTGT
87732160 ACACGTGATG
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
67 1 0.01
68 100 0.92
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (67 bp):
ATCACACATGTGACCTAGCTACATTTATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCC
GT
Found at i:87742477 original size:29 final size:29
Alignment explanation
Indices: 87742445--87742575 Score: 138
Period size: 29 Copynumber: 4.5 Consensus size: 29
87742435 GACGAGATTN
*
87742445 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
* *
87742474 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
* * ***
87742503 GGCACTAAGTGTGCGAGCTCGAAGGGCAT
1 GGCACTAAGTGTGCGTGCTGGAAATACAT
* * * *
87742532 GGCACTATGTGTGCGGGCT-TAAATCGCAT
1 GGCACTAAGTGTGCGTGCTGGAAAT-ACAT
87742561 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
87742576 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATACAT
Found at i:87750331 original size:29 final size:29
Alignment explanation
Indices: 87750298--87750372 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
87750288 GGTGACGAGA
87750298 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
*
87750327 ATGGCACTAAGTGTGCATGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
87750356 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
87750373 AGCTCGAAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:87750388 original size:29 final size:29
Alignment explanation
Indices: 87750298--87750431 Score: 128
Period size: 29 Copynumber: 4.6 Consensus size: 29
87750288 GGTGACGAGA
* *
87750298 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGAGCTGGAAATAC
*
87750327 ATGGCACTAAGTGTGC-ATGCTGGAAATAT
1 ATGGCACTAAGTGTGCGA-GCTGGAAATAC
* ***
87750356 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTGGAAATAC
* * * *
87750385 ATGGCACTATGTGTGCGGGCT-TAAATCGC
1 ATGGCACTAAGTGTGCGAGCTGGAAAT-AC
*
87750414 ATGGCACTAAGAGTGCGA
1 ATGGCACTAAGTGTGCGA
87750432 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTGGAAATAC
Found at i:87752803 original size:13 final size:14
Alignment explanation
Indices: 87752787--87752815 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87752777 TTATAAATAT
87752787 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
87752800 TTATAATGGTTTAA
1 TTATAATGGTTTAA
87752814 TT
1 TT
87752816 CATCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:87754167 original size:49 final size:49
Alignment explanation
Indices: 87754098--87754218 Score: 154
Period size: 49 Copynumber: 2.5 Consensus size: 49
87754088 TGTTAGCTGT
* * *
87754098 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAAAT-AAGGGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAAATGAA-AGC
* * * * *
87754147 CAGTGTAAGACCTTTTTGGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAAATGAAAGC
87754196 CAGTGTAAGACCTGTTTGGGACA
1 CAGTGTAAGACCTGTTTGGGACA
87754219 CGACATTGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 60 0.97
50 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATAAATGAAAGC
Found at i:87755381 original size:22 final size:22
Alignment explanation
Indices: 87755351--87755402 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
87755341 TAAAGGACAC
*
87755351 GGGCATGTCCCTGTATCGCTTA
1 GGGCGTGTCCCTGTATCGCTTA
87755373 GGGCGTGTCCCTGTATCGCTTA
1 GGGCGTGTCCCTGTATCGCTTA
87755395 GGGCGTGT
1 GGGCGTGT
87755403 GAGCCACACG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.10, C:0.25, G:0.35, T:0.31
Consensus pattern (22 bp):
GGGCGTGTCCCTGTATCGCTTA
Found at i:87760435 original size:27 final size:27
Alignment explanation
Indices: 87760405--87760458 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
87760395 TTACAATGAT
*
87760405 AACTAACTTAACTAATTCCAAGAACAC
1 AACTAACTTAACTAACTCCAAGAACAC
*
87760432 AACTAACTTAACTAACTCTAAGAACAC
1 AACTAACTTAACTAACTCCAAGAACAC
87760459 TAAGAATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.48, C:0.26, G:0.04, T:0.22
Consensus pattern (27 bp):
AACTAACTTAACTAACTCCAAGAACAC
Found at i:87771400 original size:20 final size:20
Alignment explanation
Indices: 87771375--87771412 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87771365 GTTTATTCGC
*
87771375 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
87771395 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
87771413 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:87773058 original size:28 final size:28
Alignment explanation
Indices: 87773026--87773094 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
87773016 GCGTAGATCA
87773026 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
87773054 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
87773082 CGATA-TACCCCTA
1 CGAAATTACCCCTA
87773095 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:87782076 original size:20 final size:20
Alignment explanation
Indices: 87782034--87782076 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
87782024 TTTACATGCT
* *
87782034 AATTTGACATATTTTGTTCC
1 AATTTGACATACTTTGGTCC
* *
87782054 AATTTGACGTACTTTGGTGC
1 AATTTGACATACTTTGGTCC
87782074 AAT
1 AAT
87782077 AGAAAAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (20 bp):
AATTTGACATACTTTGGTCC
Found at i:87787739 original size:19 final size:19
Alignment explanation
Indices: 87787715--87787754 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
87787705 CAAAGGAATC
*
87787715 AAGGATATCATATGAGGGT
1 AAGGATATCATACGAGGGT
87787734 AAGGATATCATACGAGGGT
1 AAGGATATCATACGAGGGT
87787753 AA
1 AA
87787755 CACACACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (19 bp):
AAGGATATCATACGAGGGT
Found at i:87791847 original size:57 final size:56
Alignment explanation
Indices: 87791756--87791928 Score: 220
Period size: 57 Copynumber: 3.0 Consensus size: 56
87791746 GAAATACAAA
* *
87791756 ATCTTAACTAATATAGAATATCAATATTTTAGGTAACTAATTTCGTGAGAATCAGTT
1 ATCTTAACTAATATAAAATATCAATATTTTAGGTAACTAATTTC-TAAGAATCAGTT
* * * * *
87791813 GTCTTAACTAATATAAAATATCAGTATTTCAGGTAATTAATCTTCTAAGAATCAGCT
1 ATCTTAACTAATATAAAATATCAATATTTTAGGTAACTAAT-TTCTAAGAATCAGTT
** * *
87791870 ATCTTAACTTGTATAAAATATCATTATTTTAGGTAACTAATCTCCTAAGAATCAGTT
1 ATCTTAACTAATATAAAATATCAATATTTTAGGTAACTAAT-TTCTAAGAATCAGTT
87791927 AT
1 AT
87791929 ACAGTGCGAT
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 97 0.97
58 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (56 bp):
ATCTTAACTAATATAAAATATCAATATTTTAGGTAACTAATTTCTAAGAATCAGTT
Found at i:87805828 original size:40 final size:39
Alignment explanation
Indices: 87805739--87805877 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 39
87805729 AGACTAGGAT
* *
87805739 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* * *
87805778 ACGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
87805818 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
87805858 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
87805878 CGTTATATCC
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 32 0.38
40 48 0.57
41 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:87809379 original size:53 final size:54
Alignment explanation
Indices: 87809316--87809423 Score: 173
Period size: 53 Copynumber: 2.0 Consensus size: 54
87809306 CTATTAAATG
* *
87809316 AATACTTTATAATTCGATCCAACTCGATATTTG-TTTTCTGTTTCCCAAAATAA
1 AATACTTTATAATTCGATCCAACTCAATATTTGTTTTTCTATTTCCCAAAATAA
* *
87809369 AATACTTTATAATTCGATCCAAGTCAATATTTGTTTTTCTATTTCCTAAAATAA
1 AATACTTTATAATTCGATCCAACTCAATATTTGTTTTTCTATTTCCCAAAATAA
87809423 A
1 A
87809424 CTTTTCAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 31 0.62
54 19 0.38
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (54 bp):
AATACTTTATAATTCGATCCAACTCAATATTTGTTTTTCTATTTCCCAAAATAA
Found at i:87815344 original size:57 final size:57
Alignment explanation
Indices: 87815256--87815371 Score: 196
Period size: 57 Copynumber: 2.0 Consensus size: 57
87815246 GACATACAAA
* *
87815256 ATCTTAACTGATATAGAATATCAGAATTTTAGGTAATTAATTTCCTAAGAATCAACT
1 ATCTTAACTAATATAGAATATCAGAATTTTAGGTAACTAATTTCCTAAGAATCAACT
* *
87815313 ATCTTAACTAATATAGAATATCAGTATTTTAGGTAACTAATTTCTTAAGAATCAACT
1 ATCTTAACTAATATAGAATATCAGAATTTTAGGTAACTAATTTCCTAAGAATCAACT
87815370 AT
1 AT
87815372 ATAGTGTGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (57 bp):
ATCTTAACTAATATAGAATATCAGAATTTTAGGTAACTAATTTCCTAAGAATCAACT
Found at i:87816301 original size:2 final size:2
Alignment explanation
Indices: 87816294--87816325 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
87816284 GTTTAGATAG
*
87816294 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87816326 TTAACACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:87818489 original size:19 final size:19
Alignment explanation
Indices: 87818465--87818539 Score: 53
Period size: 19 Copynumber: 4.4 Consensus size: 19
87818455 TATATAAATA
87818465 TTAATATAAAATTATATTT
1 TTAATATAAAATTATATTT
87818484 TTAATAT----TT-TATTAT
1 TTAATATAAAATTATATT-T
*
87818499 TTAATTATATAA--ATA---
1 TTAA-TATAAAATTATATTT
87818514 TTAATATAAAATTATATTT
1 TTAATATAAAATTATATTT
87818533 TTAATAT
1 TTAATAT
87818540 TTTATTATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 24
0.63 0.01 0.35
Matches are distributed among these distances:
14 10 0.23
15 11 0.26
16 6 0.14
19 16 0.37
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAATATAAAATTATATTT
Found at i:87818507 original size:49 final size:49
Alignment explanation
Indices: 87818448--87818549 Score: 204
Period size: 49 Copynumber: 2.1 Consensus size: 49
87818438 TTTTAATTAA
87818448 ATTTAATTATATAAATATTAATATAAAATTATATTTTTAATATTTTATT
1 ATTTAATTATATAAATATTAATATAAAATTATATTTTTAATATTTTATT
87818497 ATTTAATTATATAAATATTAATATAAAATTATATTTTTAATATTTTATT
1 ATTTAATTATATAAATATTAATATAAAATTATATTTTTAATATTTTATT
87818546 ATTT
1 ATTT
87818550 TTAAACAGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (49 bp):
ATTTAATTATATAAATATTAATATAAAATTATATTTTTAATATTTTATT
Found at i:87829058 original size:16 final size:17
Alignment explanation
Indices: 87829037--87829070 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
87829027 TGCAATATTT
87829037 ATAAATTTAAAT-GGAA
1 ATAAATTTAAATAGGAA
87829053 ATAAATTTAAATAGGAA
1 ATAAATTTAAATAGGAA
87829070 A
1 A
87829071 ACTCATAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
ATAAATTTAAATAGGAA
Found at i:87831583 original size:41 final size:42
Alignment explanation
Indices: 87831538--87831617 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
87831528 ATACAGGGGA
87831538 CACACGGTCT-ATCAACATGCCCGTGT-ACAAGCCGTGTGTCT
1 CACACGGTCTGATC-ACATGCCCGTGTGACAAGCCGTGTGTCT
** *
87831579 CACACGGTCTGATCACATGCTTGTGTGACATGCCGTGTG
1 CACACGGTCTGATCACATGCCCGTGTGACAAGCCGTGTG
87831618 GACTCAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 20 0.59
42 14 0.41
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.26
Consensus pattern (42 bp):
CACACGGTCTGATCACATGCCCGTGTGACAAGCCGTGTGTCT
Found at i:87833547 original size:3 final size:3
Alignment explanation
Indices: 87833529--87833576 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
87833519 TTTACTTTTG
*
87833529 ATT ATT A-T ATT A-T ATT ATT ATT A-T ATT -TT AGTA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
87833571 ATT ATT
1 ATT ATT
87833577 TCTTATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 8 0.21
3 28 0.74
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:87840293 original size:26 final size:26
Alignment explanation
Indices: 87840264--87840316 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
87840254 TCAAACATGC
87840264 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
87840290 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
87840316 A
1 A
87840317 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:87841814 original size:26 final size:26
Alignment explanation
Indices: 87841784--87841839 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
87841774 TGAAATGCCC
87841784 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87841810 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87841836 ATCA
1 ATCA
87841840 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87853423 original size:31 final size:31
Alignment explanation
Indices: 87853385--87853463 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
87853375 TTTAACGGTT
87853385 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
87853416 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
87853447 ACTGGGCCAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
87853464 ATTGTAAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:87853547 original size:42 final size:42
Alignment explanation
Indices: 87853487--87853578 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
87853477 TGGCCCATAG
*
87853487 GCCCATTTCAATAACACATGAAATATCAATAAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
* *
87853529 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
*
87853571 GCCTATTT
1 GCCCATTT
87853579 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATAAATGTATGCAA
Found at i:87853794 original size:26 final size:26
Alignment explanation
Indices: 87853723--87853845 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
87853713 CCTCTTTAAT
**
87853723 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
87853748 AACTGGGGCA-AAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
87853773 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
87853799 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
87853825 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
87853846 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 32 0.36
26 57 0.64
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:87853835 original size:52 final size:51
Alignment explanation
Indices: 87853723--87853845 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
87853713 CCTCTTTAAT
87853723 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCATTTTCAATA
*
87853773 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCATTTTCAATA
87853825 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
87853846 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 10 0.14
51 25 0.36
52 35 0.50
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCATTTTCAATA
Found at i:87853920 original size:20 final size:20
Alignment explanation
Indices: 87853895--87853970 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
87853885 TTATGAATTC
*
87853895 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
87853915 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
87853935 ATCATGTGCATATCAGATCA-
1 ATCATGTGCATATCATA-CAT
87853955 ATCATGT--ATATCATAC
1 ATCATGTGCATATCATAC
87853971 CCCACGTATC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
17 1 0.02
18 7 0.14
20 40 0.80
21 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:87853926 original size:11 final size:11
Alignment explanation
Indices: 87853895--87853949 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
87853885 TTATGAATTC
87853895 ATCATGTGCAT
1 ATCATGTGCAT
* *
87853906 TTCA--TACAT
1 ATCATGTGCAT
87853915 ATCATGTGCAT
1 ATCATGTGCAT
87853926 ATCA--TGCAT
1 ATCATGTGCAT
87853935 ATCATGTGCAT
1 ATCATGTGCAT
87853946 ATCA
1 ATCA
87853950 GATCAATCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:87854698 original size:27 final size:27
Alignment explanation
Indices: 87854668--87854728 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
87854658 GGGCATATTC
87854668 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
87854695 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
87854722 GT-ATTTT
1 GTCATTTT
87854729 TACCTATTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.14
27 24 0.83
28 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:87854816 original size:27 final size:27
Alignment explanation
Indices: 87854763--87855176 Score: 210
Period size: 27 Copynumber: 15.3 Consensus size: 27
87854753 TTTCATCCTA
* * * **
87854763 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
87854790 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * * *
87854817 TAATGGTATTTCT-ATAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
*
87854846 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAC
* * ** *
87854873 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** * *
87854900 TGAGGGTATTTCGGTAATTTCAG-AAAC
1 CAAGGGTATTTTGGTAATTT-TGTAAAC
* * **
87854927 CAATGGTATTTTGGTAACTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
87854954 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
87854981 CAAGGGTATTTTAGTAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
87855008 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTT-GTAAAC
*
87855034 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
87855061 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ***** * * *
87855088 CGAGGGTAAAACAGTAATTCTGCAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*** *
87855115 CAAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *** *
87855142 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
87855169 CGAGGGTA
1 CAAGGGTA
87855177 AAACGGTAAT
Statistics
Matches: 311, Mismatches: 65, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.08
27 262 0.84
28 6 0.02
29 18 0.06
30 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:87854968 original size:81 final size:79
Alignment explanation
Indices: 87854873--87855080 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 79
87854863 TTTTGTAAAT
*** * * *
87854873 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCAGAAACCAATGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACC-AGGGTATTT
87854938 TGGTAACTTTACAAA
65 TGGTAACTTTACAAA
* * * *
87854953 CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAGACCAGGGTATTT
1 -TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAGGGTATTT
* **
87855018 TGGTAATTTTACTGA
65 TGGTAACTTTACAAA
* ** *
87855033 TCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 TAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTT
87855081 TGTAAATCGA
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 2 0.02
80 63 0.57
81 46 0.41
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (79 bp):
TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAGGGTATTTT
GGTAACTTTACAAA
Found at i:87855060 original size:80 final size:81
Alignment explanation
Indices: 87854763--87855081 Score: 277
Period size: 81 Copynumber: 3.9 Consensus size: 81
87854753 TTTCATCCTA
* * * * * ** * * *
87854763 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAACTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
* *
87854828 CTA-TAATTTTTAGAAAGT
66 -TAGTAA-TTTTACAAA-C
* ** ** * ***
87854846 CAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTT-TGGTAACTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
** * *
87854910 TCGGTAATTTCAGAAAC
65 TTAGTAATTTTACAAAC
* *
87854927 CAATGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAACTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
*
87854992 TAGTAATTTTACAGAC
66 TAGTAATTTTACAAAC
* * * *
87855008 C-AGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAAGGGTATTTTGGTAACTTTAC-AAACGAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
87855071 TTAGTAATTTT
65 TTAGTAATTTT
87855082 GTAAATCGAG
Statistics
Matches: 193, Mismatches: 39, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
80 64 0.33
81 69 0.36
82 8 0.04
83 51 0.26
84 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAACTTTACAAACGAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
TAGTAATTTTACAAAC
Found at i:87855090 original size:54 final size:54
Alignment explanation
Indices: 87854765--87855203 Score: 262
Period size: 54 Copynumber: 8.1 Consensus size: 54
87854755 TCATCCTACA
* * * ** *
87854765 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAA-CTA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATC-G
* * * * *
87854819 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT-T
1 AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAATCG
*** * * * *
87854874 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCAG-AAACCA
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT-TGTAAATCG
* * * * * * *
87854929 ATGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
* * * *
87854983 AGGGTATTTTAGTAATTTTACAGACC-AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAATCG
** *
87855036 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
***** * * * ***
87855090 AGGGTAAAACAGTAATTCTGCAAATCAAGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
*** ** * * **** *
87855144 AGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
87855198 AGGGTA
1 AGGGTA
87855204 AAACGGTAAT
Statistics
Matches: 309, Mismatches: 62, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
53 43 0.14
54 213 0.69
55 19 0.06
56 34 0.11
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAATCG
Found at i:87855134 original size:81 final size:79
Alignment explanation
Indices: 87855046--87855312 Score: 336
Period size: 81 Copynumber: 3.3 Consensus size: 79
87855036 AGGGTATTTT
* * * *
87855046 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGC
1 GGTAATTTTGTAAATCGAGGGTA--ATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
* *
87855111 AAATCAAGGGTAAAAT
64 AAATCGAGGGTAAAAC
* *
87855127 GGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGT--AATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
87855192 AAATCGAGGGTAAAAC
64 AAATCGAGGGTAAAAC
* * * * *
87855208 GGTAATTCTGTAAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTAATA-G-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
87855273 AAATCGAGGATAAAAC
64 AAATCGAGGGTAAAAC
* *
87855289 GGTAATTCTATAAATCGAGGGTAA
1 GGTAATTTTGTAAATCGAGGGTAA
87855313 AACGATAATT
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
79 2 0.01
80 1 0.01
81 160 0.98
83 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (79 bp):
GGTAATTTTGTAAATCGAGGGTAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAAC
Found at i:87855177 original size:27 final size:27
Alignment explanation
Indices: 87855074--87855336 Score: 373
Period size: 27 Copynumber: 9.7 Consensus size: 27
87855064 GGGTATTTTA
* *
87855074 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
87855101 GTAATTCTGCAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
87855128 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
87855155 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
87855182 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
87855209 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
87855236 ATAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
87855263 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
87855290 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
87855317 ATAATTCTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
87855337 CATTTCAGTA
Statistics
Matches: 213, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 213 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:87857067 original size:2 final size:2
Alignment explanation
Indices: 87857060--87857088 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
87857050 ATTGTATCTT
87857060 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
87857089 TACTTAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:87865245 original size:94 final size:93
Alignment explanation
Indices: 87865081--87865538 Score: 459
Period size: 94 Copynumber: 4.9 Consensus size: 93
87865071 TGATTTGTGC
* * * *
87865081 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCC-ACATTATGAGAGCTAGTATAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAC--TATGATAGCCAGTGTAAGACCATGT
* * *
87865145 CTGGGACATGGCATCGGCATC-CAGACGAGG
64 CTGGGACATGGCATCGGCA-CAGAGATGAGT
* * * * *
87865175 GCTAGTGTAAAACATGTTTAGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TACTATGATAGCCAGTGTAAGACCATGTC
*
87865240 TGGGACATGGCATCAGCACAGAGATGAGT
65 TGGGACATGGCATCGGCACAGAGATGAGT
** * * *
87865269 GCCAGTGTAAGATTTGTCTGGGACATGCATCGGCCT-CGAAAGAGATAACCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAC--TA-TGATAGCCAGTGTAAGACCATG
*
87865333 TCTGGGACATGGCATCGGTACAGAGATGAGT
63 TCTGGGACATGGCATCGGCACAGAGATGAGT
* * *
87865364 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAT-ATAGCCAGTGTAAGA-CGTG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT--AC-TATGATAGCCAGTGTAAGACCATG
** *
87865427 TCTGGGACA-CACATCGGCTA-AGAG-T-TGT
63 TCTGGGACATGGCATCGGC-ACAGAGATGAGT
* * * *
87865455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTA-TATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G--GCCTACTATGATAGCCAGTGTAAGACCATG
87865519 TCTGGGACATGGCATCGGCA
63 TCTGGGACATGGCATCGGCA
87865539 ATATATCTCA
Statistics
Matches: 303, Mismatches: 45, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
90 2 0.01
91 44 0.15
92 17 0.06
93 19 0.06
94 120 0.40
95 96 0.32
96 2 0.01
97 2 0.01
98 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACTATGATAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCACAGAGATGAGT
Found at i:87865431 original size:189 final size:186
Alignment explanation
Indices: 87865081--87865538 Score: 484
Period size: 189 Copynumber: 2.5 Consensus size: 186
87865071 TGATTTGTGC
* * * * * * *
87865081 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCA-CAT-TATGAGAGCTAGTATAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CAGCGTATAAGAGAACCAGTGTAAGACCATG
*
87865144 TCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAAACATGTTTAGGACATGCATCAGC
65 TCTGGGACATGGCATCGGCATCCAGACGAGGGCCAGTGTAAAACATGTTTAGGACATGCATCAGC
* **
87865209 CATACTATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACAGAGATGAGT
130 CATACGATGATAGCCAGTGTAAGACCATGTCTGGGACA-CACATCAGCTA-AGAG-T-AGT
** * **
87865269 GCCAGTGTAAGATTTGTCTGGGACATGCATCGGCCTCG-A-AAGAGATAACCAGTGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTATAAGAG--AACCAGTGTAAGACCAT
* * * * * * *
87865332 GTCTGGGACATGGCATCGGTA-CAGAGATGAGTGCCAGTGTAAGACATGTTTGGGACATGCATCG
64 GTCTGGGACATGGCATCGGCATC-CAGACGAGGGCCAGTGTAAAACATGTTTAGGACATGCATCA
* * *
87865396 GCC-TCGACAGAT-ATAGCCAGTGTAAGA-CGTGTCTGGGACACACATCGGCTAAGAGTTGT
128 GCCAT--AC-GATGATAGCCAGTGTAAGACCATGTCTGGGACACACATCAGCTAAGAGTAGT
* * * *
87865455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTATATGAGAGCTAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTATAAGAGAACCAGTGTAAGACCATGT
87865520 CTGGGACATGGCATCGGCA
66 CTGGGACATGGCATCGGCA
87865539 ATATATCTCA
Statistics
Matches: 226, Mismatches: 33, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
186 69 0.31
187 7 0.03
188 47 0.21
189 84 0.37
190 17 0.08
191 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (186 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTATAAGAGAACCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATCCAGACGAGGGCCAGTGTAAAACATGTTTAGGACATGCATCAGCC
ATACGATGATAGCCAGTGTAAGACCATGTCTGGGACACACATCAGCTAAGAGTAGT
Found at i:87865544 original size:47 final size:45
Alignment explanation
Indices: 87865081--87865541 Score: 297
Period size: 47 Copynumber: 9.8 Consensus size: 45
87865071 TGATTTGTGC
* *
87865081 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACAT-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CA-ATAGATGAGA
* * * *
87865127 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGC-ATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAAT--AGATGAGA
* * * * * * * *
87865175 GCTAGTGTAAAACATGTTTAGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATA-GATGAGA
* * *
87865221 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-ATAGATGAGA
** *
87865269 GCCAGTGTAAGATTTGTCTGGGACATGCATCGGCCTCGAA-AGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---C-AATAGATGAGA
* * * *
87865316 ACCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-ATAGATGAGA
* * * *
87865364 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAT-ATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---CAATAGATGAGA
* ** * * *
87865411 GCCAGTGTAAGACGTGTCTGGGACACACATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATAGATG-AGA
* * * *
87865455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--ATAGATGAGA
*
87865502 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAATA
87865542 TATCTCATGT
Statistics
Matches: 323, Mismatches: 62, Indels: 59
0.73 0.14 0.13
Matches are distributed among these distances:
43 3 0.01
44 31 0.10
45 4 0.01
46 44 0.14
47 129 0.40
48 92 0.28
49 19 0.06
50 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATAGATGAGA
Found at i:87872944 original size:94 final size:93
Alignment explanation
Indices: 87872783--87873140 Score: 367
Period size: 94 Copynumber: 3.8 Consensus size: 93
87872773 GATTTGTGCT
* * * * *
87872783 CTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATTAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
* * *
87872848 GGGACATGGCATCGGCATCCAGACGAGGG
66 GGGACATGGCATCAGCATCAAGA-GAGTG
* *
87872877 CTAGTGTAAAACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
87872942 GGGACATGGCATCAGCA-CAGAGATGAGTG
66 GGGACATGGCATCAGCATCA-AGA-GAGTG
* * *
87872971 CCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCTAGTGTAAGACGA-
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCAT
* *
87873032 GTCTGGGAAAT-GCATCAGC-T-AAGAGTTGTG
62 GTCTGGGACATGGCATCAGCATCAAGAG-AGTG
* * * *
87873062 CTAGTATAAGAC-TGTTTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACCATG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATG
*
87873125 TCTGGGACATGACATC
63 TCTGGGACATGGCATC
87873141 GGCAATATAT
Statistics
Matches: 225, Mismatches: 24, Indels: 31
0.80 0.09 0.11
Matches are distributed among these distances:
90 19 0.08
91 31 0.14
92 14 0.06
93 20 0.09
94 125 0.56
95 16 0.07
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCATCAAGAGAGTG
Found at i:87873048 original size:141 final size:137
Alignment explanation
Indices: 87872776--87873140 Score: 373
Period size: 141 Copynumber: 2.6 Consensus size: 137
87872766 ATTGGGTGAT
* * * *
87872776 TTGTGCTCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACA-TTATTAGAGCCAGTGTAAGA
1 TTGTGC-C-AGTGTAAGACATGTCTGGGACATGCATCAG-CACAGATATGAGAGCCAGTGTAAGA
* * *
87872840 CCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAAACATGTCTGGGACATGCA
63 CCATGTCTGGGACAT-GCATCAGCATCCAGACGAGAGCTAGTGTAAAACATGTCTGGGAAATGCA
* *
87872905 TCAGC-CATAC
127 TCAGCTAAGAC
* *
87872915 TATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGTGCCAGTGTAA
1 T-TG-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACAGATATGAGAGCCAGTGTAA
* * *
87872980 GA-CATGTCTGGGACATGCATCAGCCTCGACAGA-GATAGCTAGTGTAAGACGA-GTCTGGGAAA
61 GACCATGTCTGGGACATGCATCAGCATC--CAGACGAGAGCTAGTGTAAAAC-ATGTCTGGGAAA
*
87873042 TGCATCAGCTAAGAG
123 TGCATCAGCTAAGAC
* * * * *
87873057 TTGTGCTAGTATAAGAC-TGTTTGGGACATGCATCAGCACGCGTATATGAGAGCTAGTGTAAGAC
1 TTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCAC-AG-ATATGAGAGCCAGTGTAAGAC
87873121 CATGTCTGGGACATGACATC
64 CATGTCTGGGACATG-CATC
87873141 GGCAATATAT
Statistics
Matches: 190, Mismatches: 22, Indels: 27
0.79 0.09 0.11
Matches are distributed among these distances:
136 10 0.05
137 12 0.06
138 18 0.09
139 26 0.14
140 25 0.13
141 68 0.36
142 31 0.16
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (137 bp):
TTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACAGATATGAGAGCCAGTGTAAGACCA
TGTCTGGGACATGCATCAGCATCCAGACGAGAGCTAGTGTAAAACATGTCTGGGAAATGCATCAG
CTAAGAC
Found at i:87873150 original size:47 final size:46
Alignment explanation
Indices: 87872783--87873150 Score: 249
Period size: 47 Copynumber: 7.9 Consensus size: 46
87872773 GATTTGTGCT
* * *
87872783 CTAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCACAT-TATTAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAG-CA-ATATATGAGAG
* * * * *
87872829 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCCAGACGAGGG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCAAT--ATATGAGAG
* * *
87872877 CTAGTGTAA-AACATGTCTGGGACATGCATCAGCCATACTATGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGCAATA-TATGAGAG
* * * *
87872923 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGTG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCA-ATATATGAGAG
* * *
87872971 CCAGTGTAAGA-CATGTCTGGGACATGCATCAGC-CTCGACA-GAGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGCAAT--ATATGAG--AG
* * * *
87873018 CTAGTGTAAGACGA-GTCTGGGAAATGCATCAGCTAAGAGT-T--GTG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGC-AATA-TATGAGAG
* * *
87873062 CTAGTATAAGA-C-TGTTTGGGACATGCATCAGCACGCGTATATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGCA---ATATATGAGAG
*
87873109 CTAGTGTAAGACCATGTCTGGGACATGACATCGGCAATATAT
1 CTAGTGTAAGACCATGTCTGGGACATG-CATCAGCAATATAT
87873151 CCCATGTTGA
Statistics
Matches: 251, Mismatches: 42, Indels: 57
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.00
43 17 0.07
44 12 0.05
45 8 0.03
46 40 0.16
47 108 0.43
48 44 0.18
49 14 0.06
50 7 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATCAGCAATATATGAGAG
Found at i:87876429 original size:29 final size:27
Alignment explanation
Indices: 87876395--87876497 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
87876385 TACTCAATCA
*
87876395 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
87876424 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
87876453 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
87876482 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
87876498 ATCTCATCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:87883649 original size:29 final size:27
Alignment explanation
Indices: 87883615--87883717 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
87883605 TACTCAATCA
*
87883615 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
87883644 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
87883673 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
87883702 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
87883718 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:87885336 original size:39 final size:40
Alignment explanation
Indices: 87885244--87885434 Score: 176
Period size: 39 Copynumber: 4.8 Consensus size: 40
87885234 GGATATAACG
* ** *
87885244 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
87885284 ACTCGCACGAATGCCTT-GGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87885323 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** * * * *
87885362 ACTCGCATGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
87885402 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
87885435 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
38 2 0.02
39 60 0.50
40 50 0.41
41 9 0.07
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:87887412 original size:31 final size:31
Alignment explanation
Indices: 87887374--87887437 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
87887364 CCTTTTCATA
87887374 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
87887405 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
87887436 TT
1 TT
87887438 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:87887683 original size:47 final size:46
Alignment explanation
Indices: 87887629--87887766 Score: 154
Period size: 47 Copynumber: 3.0 Consensus size: 46
87887619 GCTTTATCAT
*
87887629 ATAACTGGACCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGACATAAGCC-CTTTT-ATAACTGGGGCAAAAGCCCTTTCA
* * **
87887676 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACT-GGACATAAGCCCTTTTATAACTGGGGCAAAAGCCCTTTCA
* * *
87887723 ATAACTGGGGCATAAGCCCTTTGATAACT-GGGCATAAGCCCTTT
1 ATAACT-GGACATAAGCCCTTTTATAACTGGGGCAAAAGCCCTTT
87887767 TTCACTTCCT
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
46 15 0.18
47 55 0.66
48 9 0.11
49 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (46 bp):
ATAACTGGACATAAGCCCTTTTATAACTGGGGCAAAAGCCCTTTCA
Found at i:87887706 original size:23 final size:23
Alignment explanation
Indices: 87887641--87887767 Score: 184
Period size: 24 Copynumber: 5.4 Consensus size: 23
87887631 AACTGGACCT
*
87887641 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTT-ATAACTGGGGCATA
*
87887666 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTT-TATAACTGGGGCATA
87887690 AGCCCTTTTATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
87887713 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTT-ATAACTGGGGCATA
*
87887737 AGCCCTTTGATAACT-GGGCATA
1 AGCCCTTTTATAACTGGGGCATA
87887759 AGCCCTTTT
1 AGCCCTTTT
87887768 TCACTTCCTC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
22 15 0.16
23 29 0.31
24 47 0.49
25 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (23 bp):
AGCCCTTTTATAACTGGGGCATA
Found at i:87887843 original size:20 final size:20
Alignment explanation
Indices: 87887818--87887877 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
87887808 TATGATTACC
87887818 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
87887838 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
87887858 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
87887878 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:87887848 original size:11 final size:11
Alignment explanation
Indices: 87887818--87887872 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
87887808 TATGATTACC
87887818 TCATGTGCATA
1 TCATGTGCATA
*
87887829 TCA--TACATA
1 TCATGTGCATA
87887838 TCATGTGCATA
1 TCATGTGCATA
* *
87887849 TCA--TACATT
1 TCATGTGCATA
87887858 TCATGTGCATA
1 TCATGTGCATA
87887869 TCAT
1 TCAT
87887873 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:87891502 original size:27 final size:27
Alignment explanation
Indices: 87891332--87891504 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
87891322 CCCCAAAATT
* *
87891332 GGTAAAATAACCATAATGCCCCT-TCAG
1 GGTAAAATGACCGTAATGCCCCTAT-AG
* * *
87891359 GGTAAAATAACTGTAATGCCACTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
87891386 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
87891413 GGTAAAATGAACGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
87891440 GGTAAAATGAACGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
87891467 GGTAAAATGACCGTAATACCCATGTAT
1 GGTAAAATGACCGTAATGCCCCTATAG
87891494 GGTAAAATGAC
1 GGTAAAATGAC
87891505 GATTATGCCC
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 128 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:87891513 original size:81 final size:81
Alignment explanation
Indices: 87891331--87891514 Score: 248
Period size: 81 Copynumber: 2.3 Consensus size: 81
87891321 ACCCCAAAAT
* *
87891331 TGGTAAAATAACCATAATGCCCCTTCAGGGTAAAATAACTGTAATGCCACTATAGGGTAAAATGA
1 TGGTAAAATGACGATAATGCCCCTTCAGGGTAAAATAACTGTAATGCCACTATAGGGTAAAATGA
* *
87891396 CCATAATGCCCCTGTA
66 CCATAATACCCATGTA
* *
87891412 GGGTAAAATGAACG-TAATGCCCCTAT-AGGGTAAAATGAAC-GTAATGCCCCTATAGGGTAAAA
1 TGGTAAAATG-ACGATAATGCCCCT-TCAGGGTAAAAT-AACTGTAATGCCACTATAGGGTAAAA
*
87891474 TGACCGTAATACCCATGTA
63 TGACCATAATACCCATGTA
*
87891493 TGGTAAAATGACGATTATGCCC
1 TGGTAAAATGACGATAATGCCC
87891515 TTATGTTTCG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
80 3 0.03
81 81 0.90
82 6 0.07
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
TGGTAAAATGACGATAATGCCCCTTCAGGGTAAAATAACTGTAATGCCACTATAGGGTAAAATGA
CCATAATACCCATGTA
Found at i:87891689 original size:27 final size:27
Alignment explanation
Indices: 87891640--87891703 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
87891630 TGGAGGAAGT
*
87891640 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGACTATGCCACATTC
* * *
87891666 ACTGTTACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGACTATGCCACATTC
*
87891693 ACTGTTTCTGG
1 ACTGTTACTGG
87891704 CAGCGATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
ACTGTTACTGGTGACTATGCCACATTC
Found at i:87893042 original size:18 final size:20
Alignment explanation
Indices: 87893016--87893052 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
87893006 CTTCATCAAT
87893016 TTTCAAC-T-TTCATAATCC
1 TTTCAACTTGTTCATAATCC
*
87893034 TTTCCACTTGTTCATAATC
1 TTTCAACTTGTTCATAATC
87893053 ACATCCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 1 0.06
20 9 0.56
ACGTcount: A:0.24, C:0.27, G:0.03, T:0.46
Consensus pattern (20 bp):
TTTCAACTTGTTCATAATCC
Found at i:87893629 original size:37 final size:37
Alignment explanation
Indices: 87893569--87893658 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 37
87893559 ATAAAGCCTG
* * *
87893569 CGGGTTTTAACCCGGATAAAATCTCCACACGTGGTCAT
1 CGGGTCTT-ACCCGGACAAAATCTCCACACGTAGTCAT
*
87893607 CGGGTCTTACCCGGACAGAATCTCCACACGTAGTCAT
1 CGGGTCTTACCCGGACAAAATCTCCACACGTAGTCAT
87893644 CGGGTCTTACCCGGA
1 CGGGTCTTACCCGGA
87893659 ATATATTTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
37 41 0.85
38 7 0.15
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (37 bp):
CGGGTCTTACCCGGACAAAATCTCCACACGTAGTCAT
Found at i:87893932 original size:48 final size:48
Alignment explanation
Indices: 87893817--87893942 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
87893807 TATTGCACAA
* * *
87893817 TAGCCATTCGGCTTTACCAAATATACATCTCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
87893865 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
87893913 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
87893943 ATTTACCTTG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:87896512 original size:33 final size:34
Alignment explanation
Indices: 87896475--87896540 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
87896465 CCCGCACTTT
*
87896475 TACTGTATAAGGCTAAGGCCCAGACTG-TACTGA
1 TACTGAATAAGGCTAAGGCCCAGACTGTTACTGA
* * *
87896508 TACTGAATAGGGCTCAGGCCTAGACTGTTACTG
1 TACTGAATAAGGCTAAGGCCCAGACTGTTACTG
87896541 CATGCACTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 23 0.82
34 5 0.18
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (34 bp):
TACTGAATAAGGCTAAGGCCCAGACTGTTACTGA
Found at i:87900825 original size:86 final size:85
Alignment explanation
Indices: 87900720--87900879 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 85
87900710 ATATGTGTTA
* *
87900720 TCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTATG
1 TCGTGTAAGACCATGTCTGGGACAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGTATG
87900783 GGACATTGGCATCGTATATGATT
63 GGACATTGGCATCGTATATGATT
* * *
87900806 TCGTGTAAGACCCTTTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCACGTATGGGA
**
87900871 TGTTGGCAT
66 CATTGGCAT
87900880 TGTACAAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 28 0.43
86 34 0.52
87 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCACGTATGGGA
CATTGGCATCGTATATGATT
Found at i:87900827 original size:42 final size:43
Alignment explanation
Indices: 87900720--87900879 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
87900710 ATATGTGTTA
* * *
87900720 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
*
87900763 TACGTGTAAGACCATGTATGGGACATTGGCATCG-TATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * *
87900806 TCGTGTAAGACCCTTTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * **
87900849 ACATGTAAGACCACGTCTGGGATGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
87900880 TGTACAAGCT
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 30 0.31
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
Found at i:87900868 original size:43 final size:43
Alignment explanation
Indices: 87900721--87900870 Score: 164
Period size: 44 Copynumber: 3.5 Consensus size: 43
87900711 TATGTGTTAT
*
87900721 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTA
* * * * *
87900765 CGTGTAAGACCATGTATGGGACATTGGCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
*
87900807 CGTGTAAGACC-CTTTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTA
*
87900850 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCACGTCTGGGA
87900871 TGTTGGCATT
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
42 29 0.33
43 29 0.33
44 31 0.35
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
Found at i:87901091 original size:19 final size:20
Alignment explanation
Indices: 87901059--87901097 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
87901049 TATGACAACG
87901059 AATGATATGAATG-TATATA
1 AATGATATGAATGTTATATA
87901078 AATGA-ATGATATGTTATATA
1 AATGATATGA-ATGTTATATA
87901098 TGCTCGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGATATGAATGTTATATA
Found at i:87907954 original size:86 final size:85
Alignment explanation
Indices: 87907859--87908018 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 85
87907849 ATATGTGTTA
* * * *
87907859 TCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTCTG
1 TCGTGTAAGACCATATCTGGAACAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGTCTG
87907922 GGACATTGGCATAGTATATGATT
63 GGACATTGGCATAGTATATGATT
* *
87907945 TCGTGTAAGACCCTATCTGGAACAGTGGCATCGATATTTGATTACATGTAAGACTACGTCTGGGA
1 TCGTGTAAGACCATATCTGGAACAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGA
**
87908010 TGTTGGCAT
66 CATTGGCAT
87908019 TGTACAAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 28 0.44
86 33 0.52
87 3 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (85 bp):
TCGTGTAAGACCATATCTGGAACAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGA
CATTGGCATAGTATATGATT
Found at i:87908017 original size:43 final size:43
Alignment explanation
Indices: 87907847--87908018 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
87907837 CATAGGATTC
*
87907847 CGATATGTG-TTATCGTGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCATGTCTGGGACGTTGGCAT
*
87907890 CGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATT-TGA-TTACGTGTAAGACCATGTCTGGGACGTTGGCAT
* * * * * *
87907934 AG-TATATGATTTCGTGTAAGACCCTATCTGGAACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCATGTCTGGGAC-GTTGGCAT
* * * *
87907976 CGATATTTGATTACATGTAAGACTACGTCTGGGATGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCAT
87908019 TGTACAAGCT
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 30 0.29
43 39 0.38
44 31 0.30
45 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCAT
Found at i:87910588 original size:12 final size:12
Alignment explanation
Indices: 87910571--87910596 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
87910561 GCATAAAAGC
87910571 GAAGAAGAGGAA
1 GAAGAAGAGGAA
87910583 GAAGAAGAGGAA
1 GAAGAAGAGGAA
87910595 GA
1 GA
87910597 TGATAAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (12 bp):
GAAGAAGAGGAA
Found at i:87915996 original size:13 final size:13
Alignment explanation
Indices: 87915978--87916002 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87915968 GTAAGTGATT
87915978 TTGATGATTTTTC
1 TTGATGATTTTTC
87915991 TTGATGATTTTT
1 TTGATGATTTTT
87916003 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:87919982 original size:41 final size:40
Alignment explanation
Indices: 87919932--87920040 Score: 164
Period size: 41 Copynumber: 2.7 Consensus size: 40
87919922 AGGTTCACCT
* *
87919932 TTAGTGGCACTTTTTAAAAAAGAGCCGCTAATGATCGAGTA
1 TTAGCGGCACTTTTTAAAAAACA-CCGCTAATGATCGAGTA
87919973 TTAGCGGCACTTTTTGAAAAAACACCGCTAATGATCGAGTA
1 TTAGCGGCACTTTTT-AAAAAACACCGCTAATGATCGAGTA
* *
87920014 TTAGCGGCACTTTTTGAAAAACCCCGC
1 TTAGCGGCACTTTTTAAAAAACACCGC
87920041 AAAAAATTTA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 10 0.16
41 46 0.73
42 7 0.11
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (40 bp):
TTAGCGGCACTTTTTAAAAAACACCGCTAATGATCGAGTA
Found at i:87920441 original size:26 final size:26
Alignment explanation
Indices: 87920402--87920511 Score: 179
Period size: 26 Copynumber: 4.2 Consensus size: 26
87920392 TGATACAAAT
*
87920402 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
87920428 TGATAAT-GGATTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTTCA
87920454 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
87920480 TGATAAT-GGTTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTTCA
87920506 TGATAA
1 TGATAA
87920512 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 4 0.05
26 74 0.93
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:87920459 original size:52 final size:52
Alignment explanation
Indices: 87920402--87920511 Score: 202
Period size: 52 Copynumber: 2.1 Consensus size: 52
87920392 TGATACAAAT
87920402 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
* *
87920454 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
87920506 TGATAA
1 TGATAA
87920512 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
Found at i:87921994 original size:28 final size:26
Alignment explanation
Indices: 87921952--87922026 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
87921942 AAAAGTAGCT
* *
87921952 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
87921980 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
87922006 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
87922027 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:87922166 original size:27 final size:27
Alignment explanation
Indices: 87922128--87922269 Score: 189
Period size: 27 Copynumber: 5.3 Consensus size: 27
87922118 TGGAGGAAGC
*
87922128 GTTCTGGTGGCTATGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACATATATCT
* * *
87922155 GTTCTGGAGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACATATATCT
*
87922182 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACATATATCT
87922209 GTTCTGGTGGCTCTGCCACGAT-TATCT
1 GTTCTGGTGGCTCTGCCAC-ATATATCT
* *
87922236 GTATCTGGTGACTCTGTCACAT-TATCT
1 GT-TCTGGTGGCTCTGCCACATATATCT
87922263 GTTCTGG
1 GTTCTGG
87922270 CAGCCATGCT
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACATATATCT
Found at i:87922355 original size:19 final size:22
Alignment explanation
Indices: 87922331--87922370 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
87922321 CTCCCCACAC
87922331 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
87922350 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
87922371 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:87923373 original size:80 final size:80
Alignment explanation
Indices: 87923289--87923444 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
87923279 TAGGTAGACA
* * *
87923289 TTTAGCGGCGATTTTCAAAAAG-CGCCTC-TAAAGAATTTTGCATA-ACGTCGTCGTTTTGTATT
1 TTTAGCGGCG-TTTTCAAAAAGACGCCGCAAAAAG-ATTTAGCA-AGACGTCGTCGTTTTGTATT
*
87923351 GAACCTTAGTGGCAAGAT
63 AAACCTTAGTGGCAAGAT
* ** * *
87923369 TTTAGCGGTGTTTTTTAAAAGACGCCGCAAAAAGATTTAGGAAGACGTCGTCGTTTTGTGTTAAA
1 TTTAGCGGCGTTTTCAAAAAGACGCCGCAAAAAGATTTAGCAAGACGTCGTCGTTTTGTATTAAA
87923434 CCTTAGTGGCA
66 CCTTAGTGGCA
87923445 TTAGCGGCGT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 10 0.16
80 50 0.78
81 4 0.06
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (80 bp):
TTTAGCGGCGTTTTCAAAAAGACGCCGCAAAAAGATTTAGCAAGACGTCGTCGTTTTGTATTAAA
CCTTAGTGGCAAGAT
Found at i:87923709 original size:28 final size:28
Alignment explanation
Indices: 87923672--87923740 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 28
87923662 CGTATACGAA
87923672 ATTTGAAAATAAAAACATATAAAA-A-TA-T
1 ATTT-AAAATAAAAA-AT-TAAAATACTATT
87923700 ATGTTAAAATGAAAAAATTAAAATACTATT
1 AT-TTAAAAT-AAAAAATTAAAATACTATT
87923730 ATTTAAAATAA
1 ATTTAAAATAA
87923741 TTTTAAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
27 5 0.14
28 12 0.33
29 16 0.44
30 3 0.08
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (28 bp):
ATTTAAAATAAAAAATTAAAATACTATT
Found at i:87923875 original size:7 final size:7
Alignment explanation
Indices: 87923854--87923893 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
87923844 TTAATTAGCA
*
87923854 TTATAGT
1 TTATGGT
*
87923861 TTAGGGT
1 TTATGGT
87923868 TTATGGT
1 TTATGGT
*
87923875 TTACGGT
1 TTATGGT
87923882 TTATGGT
1 TTATGGT
87923889 TTATG
1 TTATG
87923894 AGTTAATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.17, C:0.03, G:0.28, T:0.53
Consensus pattern (7 bp):
TTATGGT
Found at i:87924027 original size:38 final size:37
Alignment explanation
Indices: 87923966--87924051 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 37
87923956 AGTGGGTATG
* * *
87923966 GGTTATGGGTTATGGGTTTAATGGTTAAAGGGATAAA
1 GGTTAGGGGTTAGGGGTTTAATGGTTAAAGGGACAAA
* **
87924003 GGTTAGGGGTTAAGGGGTTTAATGGTTAAGGGGACATG
1 GGTTAGGGGTT-AGGGGTTTAATGGTTAAAGGGACAAA
87924041 GGTTAGGGGTT
1 GGTTAGGGGTT
87924052 TATGGTTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 10 0.24
38 32 0.76
ACGTcount: A:0.24, C:0.01, G:0.42, T:0.33
Consensus pattern (37 bp):
GGTTAGGGGTTAGGGGTTTAATGGTTAAAGGGACAAA
Found at i:87924058 original size:7 final size:7
Alignment explanation
Indices: 87924048--87924133 Score: 55
Period size: 7 Copynumber: 11.9 Consensus size: 7
87924038 ATGGGTTAGG
87924048 GGTTTAT
1 GGTTTAT
87924055 GGTTTAT
1 GGTTTAT
*
87924062 GAGTTAAT
1 G-GTTTAT
** *
87924070 ATTTTAA
1 GGTTTAT
87924077 GGTTTAT
1 GGTTTAT
*
87924084 GGATTAT
1 GGTTTAT
* *
87924091 CGATTTAG
1 -GGTTTAT
*
87924099 GGATTAT
1 GGTTTAT
*
87924106 GCGTTTAA
1 G-GTTTAT
*
87924114 GGGTTAT
1 GGTTTAT
87924121 GGTTTAT
1 GGTTTAT
87924128 GGTTTA
1 GGTTTA
87924134 AGGACTAGGA
Statistics
Matches: 56, Mismatches: 20, Indels: 6
0.68 0.24 0.07
Matches are distributed among these distances:
7 42 0.75
8 14 0.25
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:87924112 original size:15 final size:15
Alignment explanation
Indices: 87924078--87924126 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
87924068 ATATTTTAAG
*
87924078 GTTTATGGATTAT-C
1 GTTTAGGGATTATGC
87924092 GATTTAGGGATTATGC
1 G-TTTAGGGATTATGC
87924108 GTTTAAGGG-TTATG-
1 GTTT-AGGGATTATGC
87924122 GTTTA
1 GTTTA
87924127 TGGTTTAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 1 0.03
14 5 0.16
15 19 0.61
16 6 0.19
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.45
Consensus pattern (15 bp):
GTTTAGGGATTATGC
Found at i:87924221 original size:22 final size:21
Alignment explanation
Indices: 87924196--87924239 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 21
87924186 GGATAGTGGA
87924196 TATGGGTTATGGGGTCAGAGGT
1 TATGGGTTATGGGGTCAG-GGT
87924218 TATGGGTTATGGGGTCAGGGT
1 TATGGGTTATGGGGTCAGGGT
87924239 T
1 T
87924240 TAAAGGGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.16, C:0.05, G:0.45, T:0.34
Consensus pattern (21 bp):
TATGGGTTATGGGGTCAGGGT
Found at i:87924352 original size:26 final size:26
Alignment explanation
Indices: 87924323--87924423 Score: 141
Period size: 26 Copynumber: 3.9 Consensus size: 26
87924313 AATAATTTCA
*
87924323 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTA-AAT
* *
87924349 AATTTTCAAGAATTAAAATTTTAAAT
1 AATTTTCAAGATTTCAAATTTTAAAT
87924375 AATTTTCAAGATTTCAAATTTTAAAT
1 AATTTTCAAGATTTCAAATTTTAAAT
* *
87924401 AATTTTCAATATTTCAAAATTTA
1 AATTTTCAAGATTTCAAATTTTA
87924424 TCTAATTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 63 0.94
27 4 0.06
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
AATTTTCAAGATTTCAAATTTTAAAT
Found at i:87927470 original size:61 final size:64
Alignment explanation
Indices: 87927375--87927506 Score: 207
Period size: 61 Copynumber: 2.1 Consensus size: 64
87927365 CTCAATTTAT
*
87927375 AATGGCAAACCACATAGACAACTAAGATTAGCCA-T-T-GCTACTAGCATGCTTTACATCATAA
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGTAGCAACTAGCATGCTTTACATCATAA
87927436 AATGGCAAACCACATAGACAACTAAGATTAGCCATTGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATT---GTAGCAACTAGCATGCTTTACATCAT
87927501 AA
63 AA
87927503 AATG
1 AATG
87927507 TAGGTGTACG
Statistics
Matches: 64, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
61 34 0.53
62 1 0.02
66 1 0.02
67 28 0.44
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (64 bp):
AATGGCAAACCACATAGACAACTAAGATTAGCCATTGTAGCAACTAGCATGCTTTACATCATAA
Found at i:87927945 original size:24 final size:24
Alignment explanation
Indices: 87927918--87927964 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
87927908 ATTATTATTT
*
87927918 AAATATTCTCATACGTTTTATCAA
1 AAATATTATCATACGTTTTATCAA
*
87927942 AAATATTATCATCCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
87927965 TTTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.17, G:0.04, T:0.43
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAA
Found at i:87928231 original size:29 final size:29
Alignment explanation
Indices: 87928199--87928264 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
87928189 TAATTTGGAT
*
87928199 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAAAA
*
87928228 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAAAA
87928257 TAATTTTT
1 TAATTTTT
87928265 TTTGCATTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAAAA
Found at i:87928255 original size:15 final size:15
Alignment explanation
Indices: 87928201--87928255 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
87928191 ATTTGGATTA
*
87928201 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
87928216 ATTAAATTAATATAATT
1 ATTTAATTAA-AT-ATT
87928233 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
87928245 ATTTAATTAAA
1 ATTTAATTAAA
87928256 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
12 3 0.09
13 5 0.16
14 4 0.12
15 13 0.41
16 4 0.12
17 3 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:87928555 original size:9 final size:9
Alignment explanation
Indices: 87928538--87928685 Score: 224
Period size: 9 Copynumber: 16.4 Consensus size: 9
87928528 TATACTTGAG
87928538 CTTACATAA
1 CTTACATAA
*
87928547 CTCACATAA
1 CTTACATAA
87928556 CTTACATAA
1 CTTACATAA
*
87928565 CTTATATAA
1 CTTACATAA
87928574 CTTACATAA
1 CTTACATAA
87928583 CTTACATAA
1 CTTACATAA
87928592 CTTACATAA
1 CTTACATAA
*
87928601 CTCACATAA
1 CTTACATAA
*
87928610 CTCACATAA
1 CTTACATAA
*
87928619 CTCACATAA
1 CTTACATAA
*
87928628 CTTATATAA
1 CTTACATAA
87928637 CTTACATAA
1 CTTACATAA
87928646 CTTACATAA
1 CTTACATAA
*
87928655 CTTACAGAA
1 CTTACATAA
*
87928664 CTTACAGAA
1 CTTACATAA
87928673 CTTACATAA
1 CTTACATAA
87928682 CTTA
1 CTTA
87928686 ATTATACTTA
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 129 1.00
ACGTcount: A:0.44, C:0.24, G:0.01, T:0.31
Consensus pattern (9 bp):
CTTACATAA
Found at i:87934350 original size:29 final size:29
Alignment explanation
Indices: 87934317--87934448 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
87934307 GTGACGAGAT
*
87934317 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
87934346 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
87934375 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
87934404 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
87934433 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87934449 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:87942226 original size:29 final size:29
Alignment explanation
Indices: 87942193--87942266 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
87942183 GTGACGAGAT
87942193 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
87942222 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
87942251 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87942267 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:87942282 original size:29 final size:29
Alignment explanation
Indices: 87942250--87942327 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 29
87942240 CTGGAAATAT
* *
87942250 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
87942279 ATGGCACTGTATGTGTGCGGGCTTAAATCGC
1 ATGGCAC--TAAGTGTGCGAGCTCAAAGCGC
87942310 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
87942328 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 16 0.41
31 23 0.59
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:87943869 original size:24 final size:24
Alignment explanation
Indices: 87943842--87943956 Score: 162
Period size: 24 Copynumber: 4.8 Consensus size: 24
87943832 ATACCTCTTN
*
87943842 GGGCTTATGCCCCAGTTATCAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
87943866 GGGCTTATGCCCCAGTTA-TAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
*
87943889 GGGCTTATGCCCCAGTTATTGAAA
1 GGGCTTATGCCCCAGTTATTAAAA
*
87943913 GGGCTTTTGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
*
87943937 GAGGC-TAGGCCTCCAGTTAT
1 G-GGCTTATGCC-CCAGTTAT
87943957 ATGATAAAGC
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
23 22 0.27
24 49 0.60
25 11 0.13
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
GGGCTTATGCCCCAGTTATTAAAA
Found at i:87943903 original size:47 final size:48
Alignment explanation
Indices: 87943842--87943956 Score: 162
Period size: 47 Copynumber: 2.4 Consensus size: 48
87943832 ATACCTCTTN
87943842 GGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-TAAAA
1 GGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAA
** *
87943889 GGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAA
*
87943937 GAGGC-TAGGCCTCCAGTTAT
1 G-GGCTTATGCC-CCAGTTAT
87943957 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
47 39 0.64
48 11 0.18
49 11 0.18
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
GGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAA
Found at i:87944207 original size:30 final size:31
Alignment explanation
Indices: 87944147--87944209 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
87944137 CATTTACAGT
87944147 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
87944178 AAAGGCTTTGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
87944208 AA
1 AA
87944210 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 9 0.31
31 20 0.69
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:87949655 original size:12 final size:12
Alignment explanation
Indices: 87949625--87949663 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
87949615 CTTGCACCCT
*
87949625 TCCGCGACCACG
1 TCCGCGGCCACG
87949637 TCCGCGGCCACG
1 TCCGCGGCCACG
* *
87949649 TCTGCGGCCTCG
1 TCCGCGGCCACG
87949661 TCC
1 TCC
87949664 ACGAGTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.49, G:0.28, T:0.15
Consensus pattern (12 bp):
TCCGCGGCCACG
Found at i:87951230 original size:26 final size:26
Alignment explanation
Indices: 87951165--87951300 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
87951155 CTGGAGGCCT
87951165 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* **
87951189 AACCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
87951215 ATCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
87951241 AGCCCTTTTCGGTAAACTCGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
87951267 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
87951292 AGCCCTTTT
1 AGCCCTTTT
87951301 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 4 0.04
25 19 0.20
26 68 0.71
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:87951252 original size:52 final size:52
Alignment explanation
Indices: 87951165--87951300 Score: 208
Period size: 52 Copynumber: 2.7 Consensus size: 52
87951155 CTGGAGGCCT
* *
87951165 AGCCTCTTTT-AAT-AACTGGGGCA-AAACCCTTTTCGGTAAACTGGGGCATA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATA
*
87951215 ATCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATA
87951267 AGCCCTTTTCAATAAACTGGGGCAT-AGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
87951301 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
49 5 0.06
50 6 0.08
51 19 0.24
52 49 0.62
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTCGGGCATA
Found at i:87951375 original size:20 final size:20
Alignment explanation
Indices: 87951350--87951406 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
87951340 TTATGATTAC
*
87951350 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
87951370 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
87951390 ATCATGTGTATATCATA
1 ATCATGTGCATATCATA
87951407 TAATTCATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:87951414 original size:20 final size:21
Alignment explanation
Indices: 87951350--87951425 Score: 72
Period size: 20 Copynumber: 3.9 Consensus size: 21
87951340 TTATGATTAC
* * *
87951350 ATCATGTGCATTTCATA-CAT
1 ATCATGTGTATATCATATAAT
* *
87951370 ATCATGTGCATATCATA-CAT
1 ATCATGTGTATATCATATAAT
87951390 ATCATGTGTATATCATATAAT
1 ATCATGTGTATATCATATAAT
87951411 -TCA--TGTATATCATAT
1 ATCATGTGTATATCATAT
87951426 CCCACGTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 12 0.23
20 38 0.73
21 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (21 bp):
ATCATGTGTATATCATATAAT
Found at i:87953716 original size:38 final size:38
Alignment explanation
Indices: 87953660--87953739 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
87953650 GATGTGTATT
* * *
87953660 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
87953698 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
87953736 CGGG
1 CGGG
87953740 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:87953786 original size:43 final size:43
Alignment explanation
Indices: 87953711--87953982 Score: 437
Period size: 43 Copynumber: 6.4 Consensus size: 43
87953701 GATAAATCCC
* * *
87953711 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
87953752 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
87953795 GCAGGCTTAGTGCCGGTGATGTGTATT-GGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
87953837 GCAGGCTTAGTG-CGGTGATGTGTATT-GGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
87953878 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
87953921 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
87953964 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
87953983 AATGATATGT
Statistics
Matches: 218, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
41 55 0.25
42 42 0.19
43 121 0.56
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:87953879 original size:126 final size:127
Alignment explanation
Indices: 87953711--87953969 Score: 434
Period size: 126 Copynumber: 2.0 Consensus size: 127
87953701 GATAAATCCC
87953711 GCAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGT
1 GCAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGT
87953776 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATT-GGGCCTTCGTGCCTA
66 ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * * *
87953837 GCAGGCTTAGTGC-GGTGATGTGTATT-GGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGT
1 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGT
*
87953900 GTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
64 GTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
87953964 GCAGGC
1 GCAGGC
87953970 GTAATGCCGG
Statistics
Matches: 125, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
125 3 0.02
126 96 0.77
127 26 0.21
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (127 bp):
GCAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGT
ATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:87954365 original size:45 final size:42
Alignment explanation
Indices: 87954298--87954405 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
87954288 TTGACTTGAT
* *
87954298 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
87954343 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
87954385 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
87954406 ACAGGAAATG
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:87958230 original size:38 final size:38
Alignment explanation
Indices: 87958174--87958253 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
87958164 GATGTGTATT
* * *
87958174 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
87958212 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
87958250 CGGG
1 CGGG
87958254 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:87958364 original size:42 final size:43
Alignment explanation
Indices: 87958225--87958440 Score: 341
Period size: 43 Copynumber: 5.1 Consensus size: 43
87958215 GATAAATCCC
* *
87958225 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
87958266 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
87958309 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTT-GTGCCTA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
87958351 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
87958394 GCAGGCTTCGTACCGGTGATGTGTATTC-GGCCTTCGTGCCTA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
87958436 GCAGG
1 GCAGG
87958441 TGTAATGCCG
Statistics
Matches: 165, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
41 15 0.09
42 62 0.38
43 88 0.53
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:87958369 original size:85 final size:86
Alignment explanation
Indices: 87958225--87958454 Score: 344
Period size: 85 Copynumber: 2.7 Consensus size: 86
87958215 GATAAATCCC
* *
87958225 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGT
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGT
87958288 GTATTCGGGCCTTCGTGCCTA
66 GTATTCGGGCCTTCGTGCCTA
* *
87958309 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTT-GTGCCTAGCAGGCTTCGTGCTGGTGATGT
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGT
87958373 GTATTCGGGCCTTCGTGCCTA
66 GTATTCGGGCCTTCGTGCCTA
* * * *
87958394 GCAGGCTTCGTACCGGTGATGTGTATTC-GGCCTTCGTGCCTAGCAGG-TGTAATGCCGGTGA
1 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT-TAGTGCCGGTGA
87958455 AATGATATGT
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
84 23 0.17
85 96 0.73
86 13 0.10
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.31
Consensus pattern (86 bp):
GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGT
GTATTCGGGCCTTCGTGCCTA
Found at i:87958838 original size:45 final size:42
Alignment explanation
Indices: 87958771--87958878 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
87958761 TTGACTTGAT
* *
87958771 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
87958816 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
87958858 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
87958879 ACAGTGAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:87971956 original size:13 final size:13
Alignment explanation
Indices: 87971938--87971966 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
87971928 TCCTATTATG
87971938 AAAGGAAGTGATC
1 AAAGGAAGTGATC
87971951 AAAGGAAGTGATC
1 AAAGGAAGTGATC
87971964 AAA
1 AAA
87971967 CGATTGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.28, T:0.14
Consensus pattern (13 bp):
AAAGGAAGTGATC
Found at i:87972924 original size:54 final size:54
Alignment explanation
Indices: 87972842--87972950 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
87972832 CCTATTTACT
* *
87972842 ATGCAAGTAGAACTTTGACTGGAGCCCAACTCAATTAGATGGTCATTGAAAAGG
1 ATGCAAGTAGAACTTTGACTAGAGCCCAACTCAATTAGATGGTAATTGAAAAGG
*
87972896 ATGCAAGTAGAACTTTGACTAGAGCCCAACTCAATTATATGGTAATTGAAAAGG
1 ATGCAAGTAGAACTTTGACTAGAGCCCAACTCAATTAGATGGTAATTGAAAAGG
87972950 A
1 A
87972951 GCTCTTTGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (54 bp):
ATGCAAGTAGAACTTTGACTAGAGCCCAACTCAATTAGATGGTAATTGAAAAGG
Found at i:87981077 original size:55 final size:53
Alignment explanation
Indices: 87980955--87981209 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
87980945 ATTAGGGTTT
* * * *
87980955 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTCTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GT-TCATAAGAC
* * *
87981010 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGAC
* * * * *
87981065 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGAC
* *
87981118 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCA-A-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGAC
* * * *
87981167 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
87981210 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 40 0.24
51 2 0.01
52 5 0.03
53 44 0.26
54 8 0.05
55 67 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGAC
Found at i:87981161 original size:108 final size:110
Alignment explanation
Indices: 87980962--87981162 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
87980952 TTTAAGGATA
*
87980962 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTCTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
*
87981027 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
* * *
87981072 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAG
*
87981134 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
87981163 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 2 0.02
108 49 0.58
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
Found at i:87982948 original size:3 final size:3
Alignment explanation
Indices: 87982940--87982986 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
87982930 GCTCATGCTA
87982940 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
87982987 ACGACGAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:87986088 original size:47 final size:47
Alignment explanation
Indices: 87986025--87986507 Score: 723
Period size: 47 Copynumber: 10.3 Consensus size: 47
87986015 CCCTTCGGGA
* *
87986025 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
87986072 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
87986119 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
87986166 CTTATCACATATATACACTTTCACATTCATCACGTTAGCCACTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
87986213 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
87986260 CTTATCACATATACACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
87986307 CTTATCTCATATACACACTTTCACATTCATCACCTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
87986354 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
87986401 CTTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
87986448 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
87986495 CTTATCACATATA
1 CTTATCACATATA
87986508 CACATCTTGT
Statistics
Matches: 394, Mismatches: 42, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 394 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:87989720 original size:40 final size:40
Alignment explanation
Indices: 87989675--87989842 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
87989665 CGGAATATAA
87989675 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
87989715 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
87989755 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
87989795 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
87989835 CCGGATAT
1 CCGGATAT
87989843 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:87992298 original size:46 final size:46
Alignment explanation
Indices: 87992245--87992420 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
87992235 TATTTGGGCA
87992245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
87992291 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
87992338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
87992384 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87992421 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:87992400 original size:93 final size:93
Alignment explanation
Indices: 87992241--87992412 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87992231 GGGATATTTG
* *
87992241 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87992306 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
87992334 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87992399 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
87992413 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:87997465 original size:42 final size:42
Alignment explanation
Indices: 87997418--87997524 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
87997408 TATTGGTCTC
87997418 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
87997460 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
87997502 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
87997525 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:87997589 original size:27 final size:28
Alignment explanation
Indices: 87997532--87997601 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
87997522 AAAATTGTAC
**
87997532 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
87997560 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
87997587 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
87997602 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:87999776 original size:50 final size:50
Alignment explanation
Indices: 87999638--87999777 Score: 165
Period size: 50 Copynumber: 2.8 Consensus size: 50
87999628 TGAGGTCGCA
* *
87999638 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-ATACTGTGATCACG
* * * * ** *
87999689 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGT-TAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTGT-GATCACG
*
87999739 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAGCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
87999778 GCTTTGGCTA
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
49 1 0.01
50 42 0.57
51 31 0.42
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTGTGATCACG
Found at i:88002762 original size:17 final size:17
Alignment explanation
Indices: 88002735--88002776 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
88002725 AATAAATCAT
88002735 AAATAATAAATAATTAAA
1 AAATAA-AAATAATTAAA
*
88002753 AATTAAAAATAATTAAA
1 AAATAAAAATAATTAAA
88002770 AAATAAA
1 AAATAAA
88002777 TAACCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAAAAATAATTAAA
Done.