Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 301 of 345
Found at i:90684986 original size:39 final size:37
Alignment explanation
Indices: 90684884--90684991 Score: 144
Period size: 39 Copynumber: 2.8 Consensus size: 37
90684874 GCTGGAAATT
* *
90684884 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
90684922 TAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T-ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
90684962 TATCCGGGCTAAGACCCGAAGGCATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC
90684992 ACGTGTTATA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
38 8 0.13
39 53 0.84
40 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:90696638 original size:24 final size:24
Alignment explanation
Indices: 90696611--90696673 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
90696601 CTTATTATGT
90696611 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
90696635 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
90696659 TCGCACACATAGTGC
1 TCGCACACATAGTGC
90696674 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:90697133 original size:2 final size:2
Alignment explanation
Indices: 90697126--90697161 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
90697116 CATACTTATG
90697126 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90697162 CATAACCGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:90711265 original size:17 final size:17
Alignment explanation
Indices: 90711245--90711302 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
90711235 GATTTCTTCA
90711245 AAAAATATTAATTAATT
1 AAAAATATTAATTAATT
*
90711262 AAAAACA-TAATATAATT
1 AAAAATATTAAT-TAATT
90711279 ACAAAATATTCAATT--TT
1 A-AAAATATT-AATTAATT
90711296 AAAAATA
1 AAAAATA
90711303 ATACAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 10 0.29
17 15 0.43
18 5 0.14
19 2 0.06
20 3 0.09
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATATTAATTAATT
Found at i:90713696 original size:3 final size:3
Alignment explanation
Indices: 90713690--90713717 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
90713680 AAAGAAAAAA
90713690 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
90713718 GAGACTGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:90718422 original size:164 final size:166
Alignment explanation
Indices: 90718096--90718427 Score: 420
Period size: 164 Copynumber: 2.0 Consensus size: 166
90718086 CTGTTTTTTT
* * * *
90718096 GGGGGGGTGGGGTGTTCAGTATTAATTGACAGGTGCACTTGAGTTGAGAACAGCTTCCTGTTATT
1 GGGGGGGTGGGGGGTTCAGAATTAATTGACAGGTGCACTTGAATTAAGAACAGCTTCCTGTTATT
* ** * *
90718161 GAGAAACCTAGTGATATCCATATTTATAGTTTTATAATGTTTGGGCTTTTAGGCTATTGAGTTCT
66 GAGAAACCTAGTGATATCCATACTTATAGTTTTATAACATTTGGACTTTTAAGCTATTGAGTTCT
* *
90718226 ATTTAAAATATGTATCTTAGTCACTTAAAAGAAAAA
131 ATTTAAAATATGAACCTTAGTCACTTAAAAGAAAAA
* * * * *
90718262 GGGGGGG-GGGGGGTTCGGAATTTATTGACAGGTGTATTTGAATTAAGAACAGCTTTCTGTTATT
1 GGGGGGGTGGGGGGTTCAGAATTAATTGACAGGTGCACTTGAATTAAGAACAGCTTCCTGTTATT
* * * *
90718326 -A-ACAATCTAGT-ATAATCCGTACTTCTAGTTTTATAACATTTGGACTTTTAAGCTATTTAGTT
66 GAGA-AACCTAGTGAT-ATCCATACTTATAGTTTTATAACATTTGGACTTTTAAGCTATTGAGTT
* *
90718388 TTATTTAGAATATGAACCTTAGTCACTTAAAAGAAAAA
129 CTATTTAAAATATGAACCTTAGTCACTTAAAAGAAAAA
90718426 GG
1 GG
90718428 TAGTTTAGGC
Statistics
Matches: 142, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
163 3 0.02
164 84 0.59
165 48 0.34
166 7 0.05
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.37
Consensus pattern (166 bp):
GGGGGGGTGGGGGGTTCAGAATTAATTGACAGGTGCACTTGAATTAAGAACAGCTTCCTGTTATT
GAGAAACCTAGTGATATCCATACTTATAGTTTTATAACATTTGGACTTTTAAGCTATTGAGTTCT
ATTTAAAATATGAACCTTAGTCACTTAAAAGAAAAA
Found at i:90723854 original size:45 final size:44
Alignment explanation
Indices: 90723769--90723854 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 44
90723759 TATGTAATTT
*
90723769 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
* *
90723813 GAACTCATTGAGTTGTGGTCTGAGTTCATTATATGTATGACA
1 GAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
90723855 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
Found at i:90730754 original size:13 final size:13
Alignment explanation
Indices: 90730736--90730762 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90730726 GAAGTAATCG
90730736 CACACGGGCGTGT
1 CACACGGGCGTGT
90730749 CACACGGGCGTGT
1 CACACGGGCGTGT
90730762 C
1 C
90730763 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:90740418 original size:21 final size:20
Alignment explanation
Indices: 90740381--90740419 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
90740371 TTAAAAATTA
**
90740381 ATTTAATTTTTTGAATTATT
1 ATTTAATTGATTGAATTATT
90740401 ATTTAATTGATTGTAATTA
1 ATTTAATTGATTG-AATTA
90740420 AACAATTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
ATTTAATTGATTGAATTATT
Found at i:90741389 original size:12 final size:12
Alignment explanation
Indices: 90741359--90741395 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
90741349 CCAACCACAC
90741359 GCCCGTGTGTCTA
1 GCCCGTGTG-CTA
90741372 GCCCGTGTGCTA
1 GCCCGTGTGCTA
*
90741384 GGCCGTGTGCTA
1 GCCCGTGTGCTA
90741396 CGCTGTGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.61
13 9 0.39
ACGTcount: A:0.08, C:0.30, G:0.35, T:0.27
Consensus pattern (12 bp):
GCCCGTGTGCTA
Found at i:90742340 original size:17 final size:17
Alignment explanation
Indices: 90742318--90742353 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
90742308 TCATAAATAC
90742318 ACAATTCATCAAATTGA
1 ACAATTCATCAAATTGA
90742335 ACAATTCATCAAATTGA
1 ACAATTCATCAAATTGA
90742352 AC
1 AC
90742354 TTGTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (17 bp):
ACAATTCATCAAATTGA
Found at i:90742622 original size:40 final size:40
Alignment explanation
Indices: 90742531--90742710 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
90742521 ATTCTCGCAA
**
90742531 ACTAAGTGCCAATACATAGCCGAAGCTAT-TTTAATCTCACAC
1 ACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAA--TCACAC
*
90742573 ACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCACAC
1 ACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCACAC
* * * **
90742613 GCTAAGTGCCATACATAGTCGAAGCTATCTCCAATCGTAC
1 ACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCACAC
*
90742653 ACTAAGTGCCATACATAGCTGAAGCTATCTCGAATCACAC
1 ACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCACAC
90742693 ACTAAGTGCCATACATAG
1 ACTAAGTGCCATACATAG
90742711 TCGGATTGTC
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 92 0.74
41 18 0.15
42 14 0.11
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (40 bp):
ACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCACAC
Found at i:90745103 original size:26 final size:26
Alignment explanation
Indices: 90745073--90745122 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
90745063 AAACTTTTCT
*
90745073 AAAAGAATACAC-AAGAGAAGTTCTTA
1 AAAAGAAAACACAAAGAGAA-TTCTTA
*
90745099 AAAAGAAAACTCAAAGAGAATTCT
1 AAAAGAAAACACAAAGAGAATTCT
90745123 ATTAACTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (26 bp):
AAAAGAAAACACAAAGAGAATTCTTA
Found at i:90746602 original size:28 final size:28
Alignment explanation
Indices: 90746538--90746603 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
90746528 AAAGAGTTTA
* * *
90746538 CCACAAGGCACTATTTTAACAGAGATGG
1 CCACAAAGCACTATTTTAACAAAGATAG
*
90746566 CAACAAAAGCA-TATTTTTAACAAAGATAG
1 CCAC-AAAGCACTA-TTTTAACAAAGATAG
90746595 CCACAAAGC
1 CCACAAAGC
90746604 CATCCTCTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (28 bp):
CCACAAAGCACTATTTTAACAAAGATAG
Found at i:90746643 original size:29 final size:29
Alignment explanation
Indices: 90746589--90746652 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
90746579 TTTTTAACAA
* *
90746589 AGATAGCCACAAAGCCATCCTCTTAA-TAG
1 AGATAGCCACAAAGACATCATCTTAACT-G
*
90746618 AGATAGCCATAAAGACATTCAT-TTAACTG
1 AGATAGCCACAAAGACA-TCATCTTAACTG
90746647 AGATAG
1 AGATAG
90746653 TGTAACACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (29 bp):
AGATAGCCACAAAGACATCATCTTAACTG
Found at i:90748170 original size:48 final size:47
Alignment explanation
Indices: 90748103--90748370 Score: 208
Period size: 48 Copynumber: 5.6 Consensus size: 47
90748093 GTGAATTATC
* * *
90748103 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGT-GAGCCA
* * * * * * *
90748151 GATGCTATGTCCAAGACATGGTCCTACACTAGCTCTCGTCTCAATGCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGT-GA-GCCA
* *
90748200 -ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTG-G-CG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC--A-CATGTGAGCCA
* * *
90748247 GATGCAATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTG-GCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCA-CATGTGAGCCA
* * *
90748296 -ATGCCATGTCCCAGACATGATCTTACACTAGCTTTCATAATATG-GCC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC--TCA-CATGTGAGCCA
*
90748343 GATGCCATGTCCCATACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
90748371 TTGGCACACA
Statistics
Matches: 181, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 170 0.94
49 4 0.02
50 3 0.02
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTGAGCCA
Found at i:90748268 original size:96 final size:95
Alignment explanation
Indices: 90748104--90748370 Score: 290
Period size: 96 Copynumber: 2.8 Consensus size: 95
90748094 TGAATTATCG
* * ** * * * *
90748104 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAT-GTCGAGGCAGATGCTATGTCCAAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAAT-GTGGCAGATGCAATGTCCCAGAC
* * *
90748168 ATGGTCCTACACTAGCTCTCGTCTCAA-T-GCCA
65 ATGGTCTTACACTAGCACTC--AT-AAGTGGCCA
*
90748200 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTGGCGGATGCAATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTGGCAGATGCAATGTCCCAGACA
*
90748265 TGGTCTTACACTGGCACTCATAATGTGGCCA
66 TGGTCTTACACTAGCACTCATAA-GTGGCCA
* * * * *
90748296 ATGCCATGTCCCAGACATGATCTTACACTAGCT-TTCATAATATGGCCGATGCCATGTCCCATAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTT-ATAATGTGGCAGATGCAATGTCCCAGAC
90748360 ATGGTCTTACA
65 ATGGTCTTACA
90748371 TTGGCACACA
Statistics
Matches: 148, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 3 0.02
96 141 0.95
97 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTGGCAGATGCAATGTCCCAGACA
TGGTCTTACACTAGCACTCATAAGTGGCCA
Found at i:90748376 original size:96 final size:96
Alignment explanation
Indices: 90748196--90748382 Score: 295
Period size: 96 Copynumber: 1.9 Consensus size: 96
90748186 TCGTCTCAAT
* * *
90748196 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTGGCGGATGCAATGTCCCA
1 GCCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTTATAATATGGCCGATGCAATGTCCCA
*
90748261 GACATGGTCTTACACTGGCACTCATAATGTG
66 GACATGGTCTTACACTGGCACACATAATGTG
*
90748292 GCCAATGCCATGTCCCAGACATGATCTTACACTAGCT-TTCATAATATGGCCGATGCCATGTCCC
1 GCCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTT-ATAATATGGCCGATGCAATGTCCC
* *
90748356 ATACATGGTCTTACATTGGCACACATA
65 AGACATGGTCTTACACTGGCACACATA
90748383 TCACCCAAAT
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 2 0.02
96 81 0.98
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (96 bp):
GCCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTTATAATATGGCCGATGCAATGTCCCA
GACATGGTCTTACACTGGCACACATAATGTG
Found at i:90755052 original size:30 final size:32
Alignment explanation
Indices: 90754990--90755052 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 32
90754980 GCACCAACCT
* *
90754990 ACACAATATCAACCAAAACCAATCTAAGCATA
1 ACACAATATCAACCAAAACCAACCTAACCATA
90755022 ACAC-ATAT-AACCAAAA-CAACCATAACCATA
1 ACACAATATCAACCAAAACCAACC-TAACCATA
90755052 A
1 A
90755053 GAAATTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 4 0.14
30 16 0.57
31 4 0.14
32 4 0.14
ACGTcount: A:0.56, C:0.29, G:0.02, T:0.14
Consensus pattern (32 bp):
ACACAATATCAACCAAAACCAACCTAACCATA
Found at i:90755852 original size:48 final size:47
Alignment explanation
Indices: 90755687--90755858 Score: 177
Period size: 48 Copynumber: 3.6 Consensus size: 47
90755677 GGTGAATTAT
* * * ** * * *
90755687 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATAT-AATGC
* * * *
90755735 AGATGCCATGTCCCAGACATGGTCCTACACTAGCTTTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATAT-AATGC
90755783 C-ATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATA-ATATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATA-AT-GC
*
90755830 CGATGTCATGTCCCAGACATGGTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
90755859 TTGGCACACA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
45 1 0.01
46 2 0.02
47 39 0.37
48 63 0.60
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATAATGC
Found at i:90757135 original size:29 final size:29
Alignment explanation
Indices: 90757067--90757178 Score: 109
Period size: 29 Copynumber: 3.9 Consensus size: 29
90757057 GGGGTGTTAC
* * * *
90757067 AGATAGCCACAAAGGATTCCTTTTAACAG
1 AGATTGCCATAAAGGCTTCCTTATAACAG
90757096 AGATTGCCATAAAGGCTTCCTTATAACAG
1 AGATTGCCATAAAGGCTTCCTTATAACAG
* * *
90757125 AGA-TGATCATAAAGGCTTCATTATAACAA
1 AGATTG-CCATAAAGGCTTCCTTATAACAG
* * * *
90757154 ATATTTCCACAAAGGCTCCCTTATA
1 AGATTGCCATAAAGGCTTCCTTATA
90757179 TGGAAACTAG
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.03
29 65 0.96
30 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (29 bp):
AGATTGCCATAAAGGCTTCCTTATAACAG
Found at i:90763428 original size:30 final size:29
Alignment explanation
Indices: 90763392--90763449 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
90763382 AATCGAAAGT
90763392 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
90763422 TTTGGCACTAAGTGTGCGATTTAACTAG
1 TTTGGCACTAAGTGTGCGATTTAACTAG
90763450 TTTCGACTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 6 0.21
30 22 0.79
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:90767854 original size:68 final size:68
Alignment explanation
Indices: 90767782--90767955 Score: 171
Period size: 68 Copynumber: 2.6 Consensus size: 68
90767772 CATCATGTGT
** * * *
90767782 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACAAGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACAAGTGTGATTCAAGGGAAGGA-CACC
90767844 ATGTAG
63 ATGTAG
* * *
90767850 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCACATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATGTAGCTAGGTCACAAGTGTGATT-CAAGGGAAGGACACC
90767915 ATGTAG
63 ATGTAG
*
90767921 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACA
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACA
90767956 TGGGTGGTAC
Statistics
Matches: 91, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
66 12 0.13
67 6 0.07
68 33 0.36
69 7 0.08
70 6 0.07
71 27 0.30
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACAAGTGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:90775526 original size:40 final size:40
Alignment explanation
Indices: 90775481--90775610 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
90775471 CGGAATATAA
90775481 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
90775521 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
90775561 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
90775601 CCGGATATAA
1 CCGGATATAA
90775611 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:90775625 original size:40 final size:39
Alignment explanation
Indices: 90775497--90775647 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
90775487 ATAACCATGT
* * *
90775497 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
90775537 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
90775577 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
90775616 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
90775648 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:90775631 original size:80 final size:79
Alignment explanation
Indices: 90775481--90775647 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
90775471 CGGAATATAA
*
90775481 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
90775546 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
90775561 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
90775623 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
90775640 CCGGATAT
1 CCGGATAT
90775648 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:90784037 original size:31 final size:31
Alignment explanation
Indices: 90783988--90784057 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
90783978 AACCCTTCCT
* *
90783988 GCATTAAATCCAACCAAAAATAGCAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
** *
90784019 GCATGAAATCCATTCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
90784050 GCATGAAA
1 GCATGAAA
90784058 AATAAAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.19, G:0.11, T:0.19
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:90784322 original size:21 final size:21
Alignment explanation
Indices: 90784298--90784373 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
90784288 TCTACTGCCA
*
90784298 TCGCTGTTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* * *
90784319 TCGCTGCTACCGCTGCCTCTC
1 TCGCTGCTGCCTCTGCCTCCC
* *
90784340 TCACTGCTGCCACTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
90784361 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
90784374 CGCTCTAAGT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.04, C:0.49, G:0.17, T:0.30
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:90789887 original size:9 final size:9
Alignment explanation
Indices: 90789870--90789941 Score: 60
Period size: 9 Copynumber: 8.2 Consensus size: 9
90789860 TAAGTATAAT
*
90789870 TAAGCTATG
1 TAAGTTATG
90789879 TAAGTTATG
1 TAAGTTATG
* * *
90789888 ATATGATATA
1 -TAAGTTATG
*
90789898 T-ATTTATG
1 TAAGTTATG
90789906 T-A-TTATG
1 TAAGTTATG
90789913 TAAGTTATG
1 TAAGTTATG
*
90789922 TAAATTATG
1 TAAGTTATG
90789931 TAAGTTATG
1 TAAGTTATG
90789940 TA
1 TA
90789942 TTATGTACGG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 6 0.12
8 6 0.12
9 32 0.64
10 6 0.12
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:90789913 original size:34 final size:34
Alignment explanation
Indices: 90789875--90789948 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
90789865 ATAATTAAGC
* *
90789875 TATGTAAGTTATG-ATATGATATATATTTATGTAT
1 TATGTAAGTTATGTAAATGATATA-AGTTATGTAT
* *
90789909 TATGTAAGTTATGTAAATTATGTAAGTTATGTAT
1 TATGTAAGTTATGTAAATGATATAAGTTATGTAT
90789943 TATGTA
1 TATGTA
90789949 CGGTATAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 28 0.80
35 7 0.20
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (34 bp):
TATGTAAGTTATGTAAATGATATAAGTTATGTAT
Found at i:90789930 original size:18 final size:18
Alignment explanation
Indices: 90789907--90789941 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
90789897 ATATTTATGT
90789907 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
90789925 ATTATGTAAGTTATGTA
1 ATTATGTAAGTTATGTA
90789942 TTATGTACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:90790088 original size:9 final size:9
Alignment explanation
Indices: 90790074--90790218 Score: 86
Period size: 9 Copynumber: 15.9 Consensus size: 9
90790064 TGTGTTAATT
90790074 TTATGTAAA
1 TTATGTAAA
*
90790083 TTATGTAAG
1 TTATGTAAA
90790092 TTATG-AAA
1 TTATGTAAA
*
90790100 TTTGATCTTTAAA
1 -TT-A--TGTAAA
*
90790113 TTATGTAAG
1 TTATGTAAA
*
90790122 TCATGT--A
1 TTATGTAAA
*
90790129 TTATGTAAG
1 TTATGTAAA
*
90790138 TTATGAAAA
1 TTATGTAAA
*
90790147 TTATGTAAG
1 TTATGTAAA
90790156 TTATG-AAA
1 TTATGTAAA
*
90790164 TTCGAACTTTAAA
1 TT---A-TGTAAA
* *
90790177 TTATATAAG
1 TTATGTAAA
90790186 TTATGT--A
1 TTATGTAAA
90790193 TTATGTAAA
1 TTATGTAAA
90790202 TTATGTAAA
1 TTATGTAAA
90790211 TTATGTAA
1 TTATGTAA
90790219 GTTGCTGGTG
Statistics
Matches: 103, Mismatches: 19, Indels: 28
0.69 0.13 0.19
Matches are distributed among these distances:
7 11 0.11
8 6 0.06
9 70 0.68
10 2 0.02
11 2 0.02
12 4 0.04
13 8 0.08
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (9 bp):
TTATGTAAA
Found at i:90790113 original size:30 final size:30
Alignment explanation
Indices: 90790079--90790190 Score: 118
Period size: 30 Copynumber: 3.6 Consensus size: 30
90790069 TAATTTTATG
*
90790079 TAAATTATGTAAGTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
* * *
90790109 TAAATTATGTAAGTCATG-TATTATGTAAGTT
1 TAAATTATGTAAGTTATGAAATT-TG-AACTT
*
90790140 ATGAAAATTATGTAAGTTATGAAATTCGAACTT
1 -T--AAATTATGTAAGTTATGAAATTTGAACTT
*
90790173 TAAATTATATAAGTTATG
1 TAAATTATGTAAGTTATG
90790191 TATTATGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
29 3 0.04
30 35 0.52
31 3 0.04
32 2 0.03
33 4 0.06
34 17 0.25
35 3 0.04
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:90790151 original size:64 final size:64
Alignment explanation
Indices: 90790074--90790221 Score: 242
Period size: 64 Copynumber: 2.3 Consensus size: 64
90790064 TGTGTTAATT
* * * *
90790074 TTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATTATGTAAG
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATATAAGTCATGTATTATGTAAA
* *
90790138 TTATGAAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATATAAGTTATGTATTATGTAAA
1 TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATATAAGTCATGTATTATGTAAA
90790202 TTATGTAAATTATGTAAGTT
1 TTATGTAAATTATGTAAGTT
90790222 GCTGGTGAAC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 77 1.00
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.45
Consensus pattern (64 bp):
TTATGTAAATTATGTAAGTTATGAAATTCGAACTTTAAATTATATAAGTCATGTATTATGTAAA
Found at i:90790152 original size:34 final size:33
Alignment explanation
Indices: 90790110--90790221 Score: 115
Period size: 34 Copynumber: 3.4 Consensus size: 33
90790100 TTTGATCTTT
* *
90790110 AAATTATGTAAGTCATGTATTATGTAAGTTATG
1 AAATTATGTAAGTTATGTATTATGTAAATTATG
* * *
90790143 AAAATTATGTAAGTTATGAAATT-CG-AACTT-T-
1 -AAATTATGTAAGTTATG-TATTATGTAAATTATG
*
90790174 AAATTATATAAGTTATGTATTATGTAAATTATG
1 AAATTATGTAAGTTATGTATTATGTAAATTATG
90790207 TAAATTATGTAAGTT
1 -AAATTATGTAAGTT
90790222 GCTGGTGAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 3 0.05
30 17 0.27
31 4 0.06
32 2 0.03
33 4 0.06
34 30 0.48
35 3 0.05
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (33 bp):
AAATTATGTAAGTTATGTATTATGTAAATTATG
Found at i:90790205 original size:16 final size:17
Alignment explanation
Indices: 90790074--90790218 Score: 77
Period size: 16 Copynumber: 9.0 Consensus size: 17
90790064 TGTGTTAATT
90790074 TTATGTAAATTATGTAA
1 TTATGTAAATTATGTAA
90790091 GTTATG-AAATT-TG--A
1 -TTATGTAAATTATGTAA
90790105 TCT-T-TAAATTATGTAA
1 T-TATGTAAATTATGTAA
*
90790121 GTCATGT--ATTATGTAA
1 -TTATGTAAATTATGTAA
*
90790137 GTTATGAAAATTATGTAA
1 -TTATGTAAATTATGTAA
*
90790155 GTTATG-AAATT-CG-AA
1 -TTATGTAAATTATGTAA
* *
90790170 CT-T-TAAATTATATAA
1 TTATGTAAATTATGTAA
90790185 GTTATGT--ATTATGTAAA
1 -TTATGTAAATTATGT-AA
90790202 TTATGTAAATTATGTAA
1 TTATGTAAATTATGTAA
90790219 GTTGCTGGTG
Statistics
Matches: 99, Mismatches: 9, Indels: 39
0.67 0.06 0.27
Matches are distributed among these distances:
13 13 0.13
14 5 0.05
15 4 0.04
16 31 0.31
17 17 0.17
18 29 0.29
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (17 bp):
TTATGTAAATTATGTAA
Found at i:90790430 original size:98 final size:99
Alignment explanation
Indices: 90790326--90791264 Score: 896
Period size: 99 Copynumber: 9.7 Consensus size: 99
90790316 AATAAAATAG
90790326 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90790391 ATTGAAATTATTTTTCGTGATTC-AAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
90790424 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90790489 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
* * *
90790523 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAAAATA--TAA--TAAAATATTAAAAT-T
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTT-AATTAGGTAATGTTAAA-A-TAAAATAA
* * ** ******* * **** *
90790583 ATTTTTCGTGATTCAAAAAAAATGAAATATTTA-AAATAA
63 AATATT-GAAATT-ATTTTTCGTG-ATTCAAAAAAAATGA
* * * ** * **
90790622 AAC-TTT-AAATACAA-TTT-ATTTTAATTAGGTAATGTTAA--A-ATAA-AATAAAATATTGAA
1 AATATTTAAAATAAAACTTTAAATACAATT---TAAT-TTAATTAGGTAATGTTAAAATA---AA
* * * ** ** *** * *** *
90790679 AT-TATTTTTCGTGATTCAAATTAAATGAAAT-ATTTAAAATAA
59 ATAAAATATT-GAAATT-ATTTTTCGTG-ATTCAAAAAAAATGA
* * **
90790721 AAC-TTT-AAATACAA-TTT-AATTTAATTAGGTAATGTTAA--A------------ATAAAATA
1 AATATTTAAAATAAAACTTTAAATACAATT---TAAT-TTAATTAGGTAATGTTAAAATAAAATA
**
90790768 AAATATTGAAATTATTTTTCGTGATTCAAATTAAATGA
62 AAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
*
90790806 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
90790871 ATTGAAATTATTTTTCGTAATT--AAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
*
90790903 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAACTAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
90790968 ATTGAAATTATTTTTCATGATTC-AAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
*
90791001 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAGTAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
* **
90791066 ATTAAAATTATTTTTCGTGATTCAAATTAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
*
90791100 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAGTAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90791165 ATTGAAATTATTTTTCGTGATT--AAAAAAATGA
66 ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
90791197 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90791262 ATT
66 ATT
90791265 TAAAATAAAA
Statistics
Matches: 731, Mismatches: 71, Indels: 79
0.83 0.08 0.09
Matches are distributed among these distances:
84 2 0.00
85 18 0.02
86 15 0.02
87 12 0.02
88 3 0.00
89 10 0.01
95 6 0.01
96 10 0.01
97 182 0.25
98 209 0.29
99 257 0.35
100 7 0.01
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (99 bp):
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
ATTGAAATTATTTTTCGTGATTCAAAAAAAATGA
Found at i:90790619 original size:99 final size:97
Alignment explanation
Indices: 90790549--90791264 Score: 1113
Period size: 99 Copynumber: 7.3 Consensus size: 97
90790539 CTTTAAATAC
* *
90790549 AATT-TAAT-TTAAAATATAATAAAATATTAAAATTATTTTTCGTGATTCAAAAAAAATGAAATA
1 AATTGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATA
*
90790612 TTTAAAATAAAACTTTAAATACAATTTATTTT
66 TTTAAAATAAAACTTTAAATACAATTTAATTT
**
90790644 AATTAGGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAATTAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90790709 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
**
90790743 AATTAGGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAATTAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90790808 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
* *
90790842 AATTAGGTAATGTTAAAATATAATAAAATATTGAAATTATTTTTCGTAATT--AAAAAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90790905 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
* *
90790939 AATTAGGTAATGTTAAACTAAAATAAAATATTGAAATTATTTTTCATGATTC-AAAAAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90791003 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
* * **
90791037 AATTAGGTAATGTTAAAATAAAGTAAAATATTAAAATTATTTTTCGTGATTCAAATTAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90791102 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
*
90791136 AATTAGGTAATGTTAAAGTAAAATAAAATATTGAAATTATTTTTCGTGATT--AAAAAAATGAAA
1 AATT--GTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAA
90791199 TATTTAAAATAAAACTTTAAATACAATTTAATTT
64 TATTTAAAATAAAACTTTAAATACAATTTAATTT
90791233 AATTAGGTAATGTTAAAATAAAATAAAATATT
1 AATT--GTAATGTTAAAATAAAATAAAATATT
90791265 TAAAATAAAA
Statistics
Matches: 590, Mismatches: 25, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
95 4 0.01
97 166 0.28
98 98 0.17
99 322 0.55
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.39
Consensus pattern (97 bp):
AATTGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAATGAAATA
TTTAAAATAAAACTTTAAATACAATTTAATTT
Found at i:90791094 original size:294 final size:295
Alignment explanation
Indices: 90790326--90791264 Score: 1622
Period size: 294 Copynumber: 3.2 Consensus size: 295
90790316 AATAAAATAG
90790326 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
*
90790391 ATTGAAATTATTTTTCGTGATTCAAA-AAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
66 ATTGAAATTATTTTTCATGATTCAAATAAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
* **
90790455 AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAAAAAAA
131 AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAATTAAA
90790520 TGAAATATTTAAAATAAAACTTTAAATAC----------AATT---TAAT-TTAAAATATAATAA
196 TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAA
*
90790571 AATATTAAAATTATTTTTCGTGATTCAAAAAAAATGA
261 AATATTGAAATTATTTTTCGTGATT--AAAAAAATGA
*
90790608 AATATTTAAAATAAAACTTTAAATACAATTTATTTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
* *
90790673 ATTGAAATTATTTTTCGTGATTCAAATTAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
66 ATTGAAATTATTTTTCATGATTCAAATAAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
*
90790738 AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTGAAATTATTTTTCGTGATTCAAATTAAA
131 AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAATTAAA
90790803 TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAA
196 TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAA
*
90790868 AATATTGAAATTATTTTTCGTAATTAAAAAAATGA
261 AATATTGAAATTATTTTTCGTGATTAAAAAAATGA
*
90790903 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAACTAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90790968 ATTGAAATTATTTTTCATGATTCAAA-AAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
66 ATTGAAATTATTTTTCATGATTCAAATAAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
*
90791032 AATTTAATTAGGTAATGTTAAAATAAAGTAAAATATTAAAATTATTTTTCGTGATTCAAATTAAA
131 AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAATTAAA
* *
90791097 TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAGTAAAATAA
196 TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAA
90791162 AATATTGAAATTATTTTTCGTGATTAAAAAAATGA
261 AATATTGAAATTATTTTTCGTGATTAAAAAAATGA
90791197 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
1 AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
90791262 ATT
66 ATT
90791265 TAAAATAAAA
Statistics
Matches: 626, Mismatches: 16, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
282 90 0.14
283 129 0.21
293 4 0.01
294 264 0.42
295 98 0.16
296 4 0.01
297 37 0.06
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (295 bp):
AATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATAAAATAAAAT
ATTGAAATTATTTTTCATGATTCAAATAAAATGAAATATTTAAAATAAAACTTTAAATACAATTT
AATTTAATTAGGTAATGTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAATTAAA
TGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAATATAATAA
AATATTGAAATTATTTTTCGTGATTAAAAAAATGA
Found at i:90791254 original size:5 final size:5
Alignment explanation
Indices: 90791246--90791295 Score: 50
Period size: 5 Copynumber: 10.4 Consensus size: 5
90791236 TAGGTAATGT
** **
90791246 TAAAA TAAAA TAAAA T-ATT TAAAA TAAAA T-ATT TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
90791294 TA
1 TA
90791296 TTAAAATTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (5 bp):
TAAAA
Found at i:90791262 original size:62 final size:63
Alignment explanation
Indices: 90791190--90791392 Score: 205
Period size: 62 Copynumber: 3.1 Consensus size: 63
90791180 CGTGATTAAA
* *
90791190 AAAATGAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAAAT
1 AAAATAAAATATTTAAAATAAAACTTTAAATAAAATTTAATTTAATTAGGTAATGTTCAAAAT
* ** ** **
90791252 AAAATAAAATATTTAAAATAAAATATTTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATT
1 AAAATAAAATATTTAAAATAAAA-CTTT-AAATAAAATTTAAT-TT--AATTA--GGTAATG-TT
90791317 CAAAA-
58 CAAAAT
* * *
90791322 AAAATAAAATATTTAAAATGAAACTTTAAATATAATTTAATTTAATTAGGTAAT-TTGAAAAT
1 AAAATAAAATATTTAAAATAAAACTTTAAATAAAATTTAATTTAATTAGGTAATGTTCAAAAT
90791384 AAAATAAAA
1 AAAATAAAA
90791393 GAGAACAAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
61 6 0.05
62 31 0.28
63 5 0.04
64 11 0.10
65 7 0.06
67 7 0.06
68 11 0.10
69 6 0.05
70 24 0.21
71 4 0.04
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (63 bp):
AAAATAAAATATTTAAAATAAAACTTTAAATAAAATTTAATTTAATTAGGTAATGTTCAAAAT
Found at i:90791267 original size:19 final size:18
Alignment explanation
Indices: 90791245--90791302 Score: 79
Period size: 14 Copynumber: 3.4 Consensus size: 18
90791235 TTAGGTAATG
90791245 TTAAAATAAAATAAAATA
1 TTAAAATAAAATAAAATA
90791263 TT----TAAAATAAAATA
1 TTAAAATAAAATAAAATA
90791277 TTTAAAATAAAATAAAATA
1 -TTAAAATAAAATAAAATA
90791296 TTAAAAT
1 TTAAAAT
90791303 TATTTTTCGT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 12 0.34
15 2 0.06
18 9 0.26
19 12 0.34
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTAAAATAAAATAAAATA
Found at i:90791270 original size:14 final size:14
Alignment explanation
Indices: 90791251--90791290 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
90791241 AATGTTAAAA
90791251 TAAAATAAAATATT
1 TAAAATAAAATATT
90791265 TAAAATAAAATATT
1 TAAAATAAAATATT
90791279 TAAAATAAAATA
1 TAAAATAAAATA
90791291 AAATATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAATAAAATATT
Found at i:90791297 original size:130 final size:131
Alignment explanation
Indices: 90791148--90791392 Score: 413
Period size: 132 Copynumber: 1.9 Consensus size: 131
90791138 TTAGGTAATG
* * *
90791148 TTAAAGTAAAATAAAATATTGAAATTATTTTTCGTGATT-AAAAAAATGAAATATTTAAAATAAA
1 TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTAAAAAAAATAAAATATTTAAAATAAA
90791212 ACTTTAAATACAATTTAATTTAATTAGGTAATGTT-AAAATAAAATAAAATATTTAAAATAAAAT
66 ACTTTAAATACAATTTAATTTAATTAGGTAAT-TTGAAAATAAAATAAAATATTTAAAATAAAAT
90791276 AT
130 AT
*
90791278 TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTCAAAAAAAATAAAATATTTAAAATGA
1 TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATT-AAAAAAAATAAAATATTTAAAATAA
*
90791343 AACTTTAAATATAATTTAATTTAATTAGGTAATTTGAAAATAAAATAAAA
65 AACTTTAAATACAATTTAATTTAATTAGGTAATTTGAAAATAAAATAAAA
90791393 GAGAACAAAA
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
130 37 0.35
131 2 0.02
132 68 0.64
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (131 bp):
TTAAAATAAAATAAAATATTAAAATTATTTTTCGTGATTAAAAAAAATAAAATATTTAAAATAAA
ACTTTAAATACAATTTAATTTAATTAGGTAATTTGAAAATAAAATAAAATATTTAAAATAAAATA
T
Found at i:90794645 original size:21 final size:21
Alignment explanation
Indices: 90794620--90794668 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
90794610 AAAGTTATAT
*
90794620 CCTAAACTCGAAAGCTTAAAC
1 CCTAAACTCGAAAGCCTAAAC
* *
90794641 CCTAAACTTGAAATCCTAAAC
1 CCTAAACTCGAAAGCCTAAAC
90794662 CCTAAAC
1 CCTAAAC
90794669 CCTAAACTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.31, G:0.06, T:0.20
Consensus pattern (21 bp):
CCTAAACTCGAAAGCCTAAAC
Found at i:90794665 original size:7 final size:7
Alignment explanation
Indices: 90794636--90794682 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
90794626 CTCGAAAGCT
90794636 TAAACCC
1 TAAACCC
*
90794643 TAAA-CT
1 TAAACCC
*
90794649 TGAAATCC
1 T-AAACCC
90794657 TAAACCC
1 TAAACCC
90794664 TAAACCC
1 TAAACCC
*
90794671 TAAACTC
1 TAAACCC
90794678 TAAAC
1 TAAAC
90794683 ACTAGCTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 2 0.06
7 30 0.88
8 2 0.06
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:90794729 original size:14 final size:14
Alignment explanation
Indices: 90794697--90794732 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
90794687 GCTAAACCTC
*
90794697 AAACACCAAACTTA
1 AAACCCCAAACTTA
90794711 AAACCCCAAACTTA
1 AAACCCCAAACTTA
90794725 AAACCCCA
1 AAACCCCA
90794733 GAACCATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.36, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCCCAAACTTA
Found at i:90795328 original size:21 final size:22
Alignment explanation
Indices: 90795303--90795353 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
90795293 AAAATTATAT
*
90795303 CCTAAACTCGAAAA-CTTAAAC
1 CCTAAACTCGAAAATCCTAAAC
*
90795324 CCTAAACT-TAAAATCCTAAAC
1 CCTAAACTCGAAAATCCTAAAC
90795345 CCTAAACTC
1 CCTAAACTC
90795354 TAAACCCTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.22
Consensus pattern (22 bp):
CCTAAACTCGAAAATCCTAAAC
Found at i:90803565 original size:20 final size:22
Alignment explanation
Indices: 90803520--90803567 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
90803510 TCTATTCTCT
**
90803520 ATGTTGCAACATCAGACTTCGT
1 ATGTTGCAACATCAGACTTCCA
90803542 ATGTTGCAACAT-AG-CTTCCA
1 ATGTTGCAACATCAGACTTCCA
90803562 ATGTTG
1 ATGTTG
90803568 GCCTAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.42
21 2 0.08
22 12 0.50
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (22 bp):
ATGTTGCAACATCAGACTTCCA
Found at i:90809338 original size:40 final size:39
Alignment explanation
Indices: 90809254--90809403 Score: 131
Period size: 40 Copynumber: 3.7 Consensus size: 39
90809244 TCGAATGATG
* * * * *
90809254 TCCGGGCTAAGTCCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT--CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
90809295 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
90809335 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* *
90809374 CCCGGGTTAAGTCCCGAAGGCATTCGTGCG
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCG
90809404 TGTCACTATA
Statistics
Matches: 88, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 33 0.38
40 39 0.44
41 15 0.17
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:90809355 original size:39 final size:40
Alignment explanation
Indices: 90809308--90809403 Score: 140
Period size: 39 Copynumber: 2.4 Consensus size: 40
90809298 GGACTAGGAT
*
90809308 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * * *
90809347 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
90809387 CCGAAGGCATTCGTGCG
1 CCGAAGGCATTCGTGCG
90809404 TGTCACTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 33 0.67
40 16 0.33
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
Found at i:90809419 original size:40 final size:40
Alignment explanation
Indices: 90809308--90809437 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
90809298 GGACTAGGAT
* * *
90809308 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
90809347 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
90809387 CCGAAGGCATTCGTGCGTGTCACTATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGG-TTAAGTC
*
90809427 CCAAAGGCATT
1 CCGAAGGCATT
90809438 TGAACGAGTC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.43
40 40 0.52
41 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:90809419 original size:79 final size:81
Alignment explanation
Indices: 90809254--90809439 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
90809244 TCGAATGATG
* * *
90809254 TCCGGGCTAAGTCCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCAT
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCAT
*
90809318 TCGTGCGAGTTAATAAA
65 TCGTGCGAGTCAATAAA
* **
90809335 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
90809397 TCGTGCGTGTCACTATAA
65 TCGTGCGAGTCAATA-AA
** *
90809415 -CCGGGCTTCGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90809440 AACGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 22 0.25
81 11 0.12
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:90817415 original size:38 final size:40
Alignment explanation
Indices: 90817370--90817464 Score: 122
Period size: 38 Copynumber: 2.4 Consensus size: 40
90817360 GGACTAGGAT
*
90817370 CCGAAGGCATTCGTGCGAGTTAAT-AATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * * *
90817408 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
*
90817448 CCAAAGGCATTCGTGCG
1 CCGAAGGCATTCGTGCG
90817465 TGTCACTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 21 0.45
39 11 0.23
40 15 0.32
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
Found at i:90817480 original size:40 final size:40
Alignment explanation
Indices: 90817373--90817482 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 40
90817363 CTAGGATCCG
* *
90817373 AAGGCATTCGTGCGAGTTA--ATAATCCGGGCTAAGCCCG
1 AAGGCATTCGTGCGAGTTACTATAACCCGGGCTAAGCCCA
* * *
90817411 AAGGCATTTGTGCAAGTTACTA-AACCCGGGTTAAGTCCCA
1 AAGGCATTCGTGCGAGTTACTATAACCCGGGCTAAG-CCCA
* *
90817451 AAGGCATTCGTGCGTGTCACTATAA-CCGGGCT
1 AAGGCATTCGTGCGAGTTACTATAACCCGGGCT
90817483 TCGTCCTGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
38 17 0.29
39 11 0.19
40 28 0.48
41 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
AAGGCATTCGTGCGAGTTACTATAACCCGGGCTAAGCCCA
Found at i:90823172 original size:63 final size:63
Alignment explanation
Indices: 90823057--90823182 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 63
90823047 ACCAAAAGAT
* ** * * * *
90823057 GACTCCCTATTGGTTGGTCTTTTGAAAAGCTTGTTATCTACCGTTGGGGTTGGAACATAGAGC
1 GACTCCCTATCGGTTGGTCTTTCAAAAAGCTTGTCATCTACCATTGGAGTTGGAACACAGAGC
*
90823120 GACTCCCTATCGGTTGGTCTTTCAAAAAGCTTGTCATTTACCATTGGAGTTGGAACACAGAGC
1 GACTCCCTATCGGTTGGTCTTTCAAAAAGCTTGTCATCTACCATTGGAGTTGGAACACAGAGC
90823183 CTATTGGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (63 bp):
GACTCCCTATCGGTTGGTCTTTCAAAAAGCTTGTCATCTACCATTGGAGTTGGAACACAGAGC
Found at i:90831414 original size:29 final size:29
Alignment explanation
Indices: 90831372--90831432 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
90831362 AAAAAGTGTA
90831372 CTTTGGTGTTTGAAGATGAAATATGAAAG
1 CTTTGGTGTTTGAAGATGAAATATGAAAG
90831401 CTTTGGTGTTTGAAGATGAAATATGAAAG
1 CTTTGGTGTTTGAAGATGAAATATGAAAG
90831430 CTT
1 CTT
90831433 GATGATAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (29 bp):
CTTTGGTGTTTGAAGATGAAATATGAAAG
Found at i:90833109 original size:23 final size:21
Alignment explanation
Indices: 90833053--90833108 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
90833043 TACGGCCTAG
90833053 CACACGAGCGTGTGACTTAGA
1 CACACGAGCGTGTGACTTAGA
*
90833074 CACACGAGCGTGTGACTTAGT
1 CACACGAGCGTGTGACTTAGA
*
90833095 CACACGAGTGTGTG
1 CACACGAGCGTGTG
90833109 TTCACCCGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (21 bp):
CACACGAGCGTGTGACTTAGA
Found at i:90842007 original size:42 final size:43
Alignment explanation
Indices: 90841968--90842071 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
90841958 TAGCCCAGCT
*
90841968 ATGATCTTACA-AAAATCAAACAATGATGCCAATGTCCCAGTC
1 ATGATCTTACACAAAATCAAACAATGATACCAATGTCCCAGTC
* ** * * *
90842010 ATGATCTTATACGTAATCACATAATGATACCAATGTCCCAGAC
1 ATGATCTTACACAAAATCAAACAATGATACCAATGTCCCAGTC
* * *
90842053 ATGGTCCTACACATAATCA
1 ATGATCTTACACAAAATCA
90842072 CATCTCGTTA
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
42 10 0.20
43 40 0.80
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (43 bp):
ATGATCTTACACAAAATCAAACAATGATACCAATGTCCCAGTC
Found at i:90842043 original size:43 final size:43
Alignment explanation
Indices: 90841989--90842074 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
90841979 AAAATCAAAC
* * * * *
90841989 AATGATGCCAATGTCCCAGTCATGATCTTATACGTAATCACAT
1 AATGATACCAATGTCCCAGACATGATCCTACACATAATCACAT
*
90842032 AATGATACCAATGTCCCAGACATGGTCCTACACATAATCACAT
1 AATGATACCAATGTCCCAGACATGATCCTACACATAATCACAT
90842075 CTCGTTAATC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
AATGATACCAATGTCCCAGACATGATCCTACACATAATCACAT
Found at i:90844134 original size:29 final size:29
Alignment explanation
Indices: 90844092--90844174 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
90844082 AGATAAACCA
90844092 ATTTGGCTTCGGGCCATGCATATCAGCTG
1 ATTTGGCTTCGGGCCATGCATATCAGCTG
*
90844121 ATTTGGCTTCGGGCCATGCATATCGGCTG
1 ATTTGGCTTCGGGCCATGCATATCAGCTG
*
90844150 ATTTGGCTTCGGTCCATG-ATATCAG
1 ATTTGGCTTCGGGCCATGCATATCAG
90844175 TATTTTGGAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 6 0.12
29 45 0.88
ACGTcount: A:0.17, C:0.23, G:0.28, T:0.33
Consensus pattern (29 bp):
ATTTGGCTTCGGGCCATGCATATCAGCTG
Found at i:90847371 original size:144 final size:142
Alignment explanation
Indices: 90847099--90847392 Score: 358
Period size: 144 Copynumber: 2.1 Consensus size: 142
90847089 ATATCCATGC
* * * * * * *
90847099 CATGACATTGGGTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCACGATA
1 CATGGCATTGGGTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGACATCGGACACGAGA
* * * * * * **
90847164 TGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTATGAGAGCCAGTGTAAGA
66 CGAGAGCCAGTATAAGACCATGTCTGGAACAAGGCATCGGCAATGACATGAGAGCCAGTGTAAGA
90847229 CCATGTCCGGGA
131 CCATGTCCGGGA
*
90847241 CATGGCATTGGTGTTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGACATC-GACATTG
1 CATGGCATTGG-G-TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGACATCGGACA-CG
* * *
90847305 AGACGAGAGCTAGTATAAGACCATGTCT-GAGACAAGGCATCGGCATTGACATGTGAGCCAGTGT
63 AGACGAGAGCCAGTATAAGACCATGTCTGGA-ACAAGGCATCGGCAATGACATGAGAGCCAGTGT
*
90847369 AAGACCATGTCTGGGA
127 AAGACCATGTCCGGGA
90847385 CATGGCAT
1 CATGGCAT
90847393 CGGCAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
142 10 0.08
143 6 0.05
144 112 0.88
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (142 bp):
CATGGCATTGGGTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGACATCGGACACGAGA
CGAGAGCCAGTATAAGACCATGTCTGGAACAAGGCATCGGCAATGACATGAGAGCCAGTGTAAGA
CCATGTCCGGGA
Found at i:90847397 original size:48 final size:48
Alignment explanation
Indices: 90847111--90847397 Score: 297
Period size: 48 Copynumber: 6.0 Consensus size: 48
90847101 TGACATTGGG
* * * *
90847111 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCA-
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT
* * * * * *
90847159 CGATATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTAA
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * **
90847207 TGTTATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATTGGTGT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * *
90847255 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGACATCGACAT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * *
90847303 TGAGACGAGAGCTAGTATAAGACCATGTCTGAGACAAGGCATCGGCAT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
*
90847351 TGACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
90847398 ATTTACCCTA
Statistics
Matches: 194, Mismatches: 44, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
47 1 0.01
48 193 0.99
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:90848979 original size:18 final size:18
Alignment explanation
Indices: 90848946--90848981 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
90848936 TTTGAGCTCA
90848946 GTTTTTGATAGTTTATAT
1 GTTTTTGATAGTTTATAT
90848964 GTTTTGTGATAG-TTATAT
1 GTTTT-TGATAGTTTATAT
90848982 CAAGTACTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.58
Consensus pattern (18 bp):
GTTTTTGATAGTTTATAT
Found at i:90858354 original size:25 final size:25
Alignment explanation
Indices: 90858320--90858382 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
90858310 ACTAGGATTG
*
90858320 CTCACACAAGGTTAGTTCGATGCTA
1 CTCACACAAGCTTAGTTCGATGCTA
*
90858345 CTCATACAAGCTTAGTTCGATGCTA
1 CTCACACAAGCTTAGTTCGATGCTA
*
90858370 CTTACACAAGCTT
1 CTCACACAAGCTT
90858383 CAAAAAATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (25 bp):
CTCACACAAGCTTAGTTCGATGCTA
Found at i:90869587 original size:39 final size:39
Alignment explanation
Indices: 90869506--90869657 Score: 259
Period size: 39 Copynumber: 3.9 Consensus size: 39
90869496 TATGGTAACC
* * * *
90869506 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
90869546 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
90869585 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
90869624 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
90869658 CAATTCGCAC
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:90877253 original size:40 final size:39
Alignment explanation
Indices: 90877209--90877351 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
90877199 GTTCAAAACA
* * ** * *
90877209 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
90877249 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
90877289 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
90877328 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
90877352 CACATTCGCA
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:90882470 original size:40 final size:40
Alignment explanation
Indices: 90882412--90882557 Score: 161
Period size: 39 Copynumber: 3.7 Consensus size: 40
90882402 CGTTCAAACA
* * ***
90882412 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
90882452 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * * *
90882492 CCTTCGGG-CTTAGCCCGGATATCATAGCTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
90882531 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
90882558 TTCGCACATT
Statistics
Matches: 92, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:90882527 original size:39 final size:39
Alignment explanation
Indices: 90882444--90882557 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
90882434 TGGTAACCCG
* * *
90882444 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCA
* *
90882484 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
90882523 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
90882558 TTCGCACATT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 52 0.78
40 15 0.22
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCA
Found at i:90897710 original size:38 final size:38
Alignment explanation
Indices: 90897662--90897737 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
90897652 CTAAAATGAT
90897662 AAAATTCACTACTTTAAATCATCACATTAACCAATATA
1 AAAATTCACTACTTTAAATCATCACATTAACCAATATA
90897700 AAAATTCACTACTTTAAATCATCACATTAACCAATATA
1 AAAATTCACTACTTTAAATCATCACATTAACCAATATA
90897738 TTCCATAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (38 bp):
AAAATTCACTACTTTAAATCATCACATTAACCAATATA
Found at i:90899494 original size:126 final size:126
Alignment explanation
Indices: 90899269--90899525 Score: 496
Period size: 126 Copynumber: 2.0 Consensus size: 126
90899259 ATTCATAACA
90899269 ACTCAGTAATTTGTTAACTTATGAACATACTCACCTACACAAATCCATTCATCTCTTAACATATC
1 ACTCAGTAATTTGTTAACTTATGAACATACTCACCTACACAAATCCATTCATCTCTTAACATATC
90899334 CCTATGTCAATTCAAACGATTAAACAGATTTTAATAAGCAAACATGTTATCGCACATACAT
66 CCTATGTCAATTCAAACGATTAAACAGATTTTAATAAGCAAACATGTTATCGCACATACAT
90899395 ACTCAGTAATTTGTTAACTTATGAACATACTCACCTACACAAATCCATTCATCTCTTAACATATC
1 ACTCAGTAATTTGTTAACTTATGAACATACTCACCTACACAAATCCATTCATCTCTTAACATATC
* *
90899460 CCTATGTCAATTCAAACGATTAAATAGATTTTAATAAGCAAACATGTTATTGCACATACAT
66 CCTATGTCAATTCAAACGATTAAACAGATTTTAATAAGCAAACATGTTATCGCACATACAT
90899521 ACTCA
1 ACTCA
90899526 TTAAATTGAA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 129 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (126 bp):
ACTCAGTAATTTGTTAACTTATGAACATACTCACCTACACAAATCCATTCATCTCTTAACATATC
CCTATGTCAATTCAAACGATTAAACAGATTTTAATAAGCAAACATGTTATCGCACATACAT
Found at i:90900945 original size:55 final size:53
Alignment explanation
Indices: 90900879--90901133 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 53
90900869 ATTAGGGTTT
*
90900879 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * *
90900934 AAGGATACCATGTAAGACCATGTCAATACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
90900989 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
90901042 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * *
90901091 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
90901134 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 39 0.23
54 12 0.07
55 69 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:90901061 original size:108 final size:110
Alignment explanation
Indices: 90900886--90901086 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
90900876 TTTAAGGATA
90900886 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
90900951 CCATGTCAATACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
90900996 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
90901058 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
90901087 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:90902668 original size:39 final size:39
Alignment explanation
Indices: 90902614--90902695 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
90902604 CAATGCTAAT
90902614 TTAAACTTCAGCTACCTTAGAAGAATAAACATGCATTGA
1 TTAAACTTCAGCTACCTTAGAAGAATAAACATGCATTGA
90902653 TTAAACTTCAGCTACCTTAGAAGAATAAACATGCATTGA
1 TTAAACTTCAGCTACCTTAGAAGAATAAACATGCATTGA
90902692 TTAA
1 TTAA
90902696 GTACTGTGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (39 bp):
TTAAACTTCAGCTACCTTAGAAGAATAAACATGCATTGA
Found at i:90904337 original size:36 final size:36
Alignment explanation
Indices: 90904297--90904371 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
90904287 GGTTTAGGGG
* *
90904297 TAGGTAGAAGATAGATAATTTTTAGGCTAAACACCC
1 TAGGTAGAAGATAAATAATTTTTAGGCTAAAAACCC
90904333 TAGGTAGAAGATAAATAATTTTTAGGCTAAAAACCC
1 TAGGTAGAAGATAAATAATTTTTAGGCTAAAAACCC
90904369 TAG
1 TAG
90904372 ACTTAGCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (36 bp):
TAGGTAGAAGATAAATAATTTTTAGGCTAAAAACCC
Found at i:90904495 original size:15 final size:15
Alignment explanation
Indices: 90904475--90904504 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
90904465 TCATGCTCTT
90904475 TTTTCTTTTCTTTTA
1 TTTTCTTTTCTTTTA
90904490 TTTTCTTTTCTTTTA
1 TTTTCTTTTCTTTTA
90904505 AATCGAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTCTTTTCTTTTA
Found at i:90914658 original size:14 final size:14
Alignment explanation
Indices: 90914639--90914666 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
90914629 AACCACTTTT
90914639 TCATAATTTATTAA
1 TCATAATTTATTAA
90914653 TCATAATTTATTAA
1 TCATAATTTATTAA
90914667 CCAAATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATAATTTATTAA
Found at i:90915081 original size:17 final size:17
Alignment explanation
Indices: 90915059--90915092 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
90915049 AATACACAGG
90915059 CCCATGTTCTAGGCCGT
1 CCCATGTTCTAGGCCGT
90915076 CCCATGTTCTAGGCCGT
1 CCCATGTTCTAGGCCGT
90915093 ATGGCACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.24, T:0.29
Consensus pattern (17 bp):
CCCATGTTCTAGGCCGT
Found at i:90921259 original size:6 final size:6
Alignment explanation
Indices: 90921248--90921290 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
90921238 TGCAAATGGA
* *
90921248 TCATTT TCATTT TCATTT TCATTT TCACTT CCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
90921291 TTTAAACCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63
Consensus pattern (6 bp):
TCATTT
Found at i:90922590 original size:52 final size:52
Alignment explanation
Indices: 90922512--90922743 Score: 234
Period size: 52 Copynumber: 4.5 Consensus size: 52
90922502 GGAATGGTAT
* * *
90922512 ATGAACTATCTTGCAATATAATGTTTATGCGAACTGTCATTACATCGATTGC
1 ATGAACTATCTTGCAATGTAATGTTTATGCGAACTGTCATTACATTGAATGC
* * * * * *
90922564 ATGAACTGTCTTGTAAGGTAATGTTTATGCAAAATGTCATTGCATTGAATGC
1 ATGAACTATCTTGCAATGTAATGTTTATGCGAACTGTCATTACATTGAATGC
* * * *
90922616 ATGAACTATCTTACAATGTAATGTTTATGTGAACTATCTTTACATTGAATGC
1 ATGAACTATCTTGCAATGTAATGTTTATGCGAACTGTCATTACATTGAATGC
* * * * * * *
90922668 AT-ATACTTTTTTGTAATATAATTTTTATGCGAAC-GATCATTGCATTAAATGC
1 ATGA-ACTATCTTGCAATGTAATGTTTATGCGAACTG-TCATTACATTGAATGC
* *
90922720 ATGAAATGTCTTGCAATGTAATGT
1 ATGAACTATCTTGCAATGTAATGT
90922744 GCTTACGATC
Statistics
Matches: 141, Mismatches: 36, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
51 1 0.01
52 139 0.99
53 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (52 bp):
ATGAACTATCTTGCAATGTAATGTTTATGCGAACTGTCATTACATTGAATGC
Found at i:90922695 original size:104 final size:104
Alignment explanation
Indices: 90922512--90922743 Score: 279
Period size: 104 Copynumber: 2.2 Consensus size: 104
90922502 GGAATGGTAT
* * *
90922512 ATGAACTATCTTGCAATATAATGTTTATGCGAACTGTCATTACATCGATTGCATGAACTGTCTTG
1 ATGAACTATCTTGCAATGTAATGTTTATGCGAACTATCATTACATCGAATGCATGAACTGTCTTG
* * *
90922577 TAAGGTAATGTTTATGCAAAATG-TCATTGCATTGAATGC
66 TAAGATAATGTTTATGC-AAACGATCATTGCATTAAATGC
* * * * * *
90922616 ATGAACTATCTTACAATGTAATGTTTATGTGAACTATCTTTACATTGAATGCAT-ATACTTTTTT
1 ATGAACTATCTTGCAATGTAATGTTTATGCGAACTATCATTACATCGAATGCATGA-ACTGTCTT
* * *
90922680 GTAATATAATTTTTATGCGAACGATCATTGCATTAAATGC
65 GTAAGATAATGTTTATGCAAACGATCATTGCATTAAATGC
* *
90922720 ATGAAATGTCTTGCAATGTAATGT
1 ATGAACTATCTTGCAATGTAATGT
90922744 GCTTACGATC
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
103 4 0.04
104 104 0.96
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (104 bp):
ATGAACTATCTTGCAATGTAATGTTTATGCGAACTATCATTACATCGAATGCATGAACTGTCTTG
TAAGATAATGTTTATGCAAACGATCATTGCATTAAATGC
Found at i:90923021 original size:16 final size:15
Alignment explanation
Indices: 90922997--90923111 Score: 61
Period size: 15 Copynumber: 7.4 Consensus size: 15
90922987 TGTAATAGAA
*
90922997 CGAGTTGTGTAATATG
1 CGAGCTGTGT-ATATG
90923013 CGAGCTGTGTATATG
1 CGAGCTGTGTATATG
* *
90923028 TGAGCTCTAGT-TATG
1 CGAGCTGT-GTATATG
* *
90923043 TCCGAGCTATGTATGTG
1 --CGAGCTGTGTATATG
* *
90923060 TGAGCTATGTAATATG
1 CGAGCTGTGT-ATATG
* * * *
90923076 CAACCTCTATATATG
1 CGAGCTGTGTATATG
* *
90923091 TGACCTGTGTATATG
1 CGAGCTGTGTATATG
90923106 CGAGCT
1 CGAGCT
90923112 CTAGTTTTGT
Statistics
Matches: 75, Mismatches: 19, Indels: 11
0.71 0.18 0.10
Matches are distributed among these distances:
15 44 0.59
16 22 0.29
17 9 0.12
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (15 bp):
CGAGCTGTGTATATG
Found at i:90931300 original size:39 final size:39
Alignment explanation
Indices: 90931217--90931338 Score: 199
Period size: 39 Copynumber: 3.1 Consensus size: 39
90931207 TGTGAATATA
90931217 TATATGCGAGAATTAATATCCGGACTTCATTGTCCGCAGGC
1 TATATGCGAGAATT-ATATCCGGACTTCA-TGTCCGCAGGC
90931258 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* * *
90931297 TATATGCGAGAATTATATCTGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
90931336 TAT
1 TAT
90931339 GTGCTGGACA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 50 0.64
40 14 0.18
41 14 0.18
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:90939633 original size:39 final size:39
Alignment explanation
Indices: 90939498--90939617 Score: 222
Period size: 39 Copynumber: 3.1 Consensus size: 39
90939488 TGTGAATATA
90939498 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
90939537 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* *
90939576 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
90939615 TAT
1 TAT
90939618 GTGCTGGACA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:90943576 original size:5 final size:5
Alignment explanation
Indices: 90943568--90943594 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
90943558 TTTTATTTTA
90943568 TTCTT TTCTT TTCTT TTCTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TT
90943595 TTCTTTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTCTT
Found at i:90948380 original size:21 final size:23
Alignment explanation
Indices: 90948351--90948394 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
90948341 TCTACAGAAA
90948351 CAATATAACACA-AATATA-AATT
1 CAATATAACA-ATAATATAGAATT
90948373 CAAT-TAACAATAATATAGAATT
1 CAATATAACAATAATATAGAATT
90948395 AATCAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.05
21 11 0.55
22 8 0.40
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (23 bp):
CAATATAACAATAATATAGAATT
Found at i:90949561 original size:38 final size:35
Alignment explanation
Indices: 90949519--90949613 Score: 93
Period size: 36 Copynumber: 2.6 Consensus size: 35
90949509 TTAATTATTT
* * *
90949519 AAATTTAAAAATTATTATAATATTATAATAAATTTAGA
1 AAATTTAAAAA-TAATAGAAAATTAT-A-AAATTTAGA
*
90949557 AAATTATAAAAATAATAGAAAATTATAAATTTTAGA
1 AAATT-TAAAAATAATAGAAAATTATAAAATTTAGA
*
90949593 AAATTTTAGAAATAA-AGAAAA
1 AAA-TTTAAAAATAATAGAAAA
90949614 ACCATAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
35 6 0.12
36 19 0.38
37 3 0.06
38 16 0.32
39 6 0.12
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (35 bp):
AAATTTAAAAATAATAGAAAATTATAAAATTTAGA
Found at i:90949564 original size:19 final size:18
Alignment explanation
Indices: 90949540--90949597 Score: 73
Period size: 19 Copynumber: 3.2 Consensus size: 18
90949530 TTATTATAAT
90949540 ATTATAATAAATTTAGAAA
1 ATTATAA-AAATTTAGAAA
*
90949559 ATTATAAAAATAATAGAAA
1 ATTATAAAAAT-TTAGAAA
*
90949578 ATTAT-AAATTTTAGAAA
1 ATTATAAAAATTTAGAAA
90949595 ATT
1 ATT
90949598 TTAGAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 9 0.26
18 8 0.23
19 18 0.51
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
ATTATAAAAATTTAGAAA
Found at i:90949592 original size:17 final size:17
Alignment explanation
Indices: 90949546--90949597 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
90949536 TAATATTATA
90949546 ATAAA-TTTAGAAAATT
1 ATAAATTTTAGAAAATT
**
90949562 ATAAAAATAATAGAAAATT
1 AT--AAATTTTAGAAAATT
90949581 ATAAATTTTAGAAAATT
1 ATAAATTTTAGAAAATT
90949598 TTAGAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 2 0.07
17 13 0.45
18 3 0.10
19 11 0.38
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
ATAAATTTTAGAAAATT
Found at i:90949606 original size:36 final size:34
Alignment explanation
Indices: 90949546--90949613 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 34
90949536 TAATATTATA
90949546 ATAAATTTAGAAAATTATAAAAATAATAGAAAATT
1 ATAAATTTAGAAAATTATAAAAATAA-AGAAAATT
* *
90949581 ATAAATTTTAGAAAATTTTAGAAATAAAGAAAA
1 ATAAA-TTTAGAAAATTATAAAAATAAAGAAAA
90949614 ACCATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (34 bp):
ATAAATTTAGAAAATTATAAAAATAAAGAAAATT
Found at i:90949621 original size:36 final size:35
Alignment explanation
Indices: 90949546--90949621 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
90949536 TAATATTATA
**
90949546 ATAAATTTAGAAAATTATAAAAATAATAGAAAATT
1 ATAAATTTAGAAAATTATAAAAATAATAGAAAACC
* *
90949581 ATAAATTTTAGAAAATTTTAGAAATAA-AGAAAAACC
1 ATAAA-TTTAGAAAATTATAAAAATAATAG-AAAACC
90949617 ATAAA
1 ATAAA
90949622 AATATTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 7 0.20
36 28 0.80
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (35 bp):
ATAAATTTAGAAAATTATAAAAATAATAGAAAACC
Found at i:90949693 original size:30 final size:31
Alignment explanation
Indices: 90949609--90949671 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
90949599 TAGAAATAAA
*
90949609 GAAAAACCATAAAAATATTATAAAGTATTGT
1 GAAAAACTATAAAAATATTATAAAGTATTGT
90949640 GAAAAACTATAAAAATATTATAAAGTATTGT
1 GAAAAACTATAAAAATATTATAAAGTATTGT
90949671 G
1 G
90949672 TAAGATATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (31 bp):
GAAAAACTATAAAAATATTATAAAGTATTGT
Found at i:90950121 original size:19 final size:18
Alignment explanation
Indices: 90950076--90950149 Score: 71
Period size: 18 Copynumber: 4.2 Consensus size: 18
90950066 TTTAATACCT
*
90950076 TTTTATATTTAT-AT-AA
1 TTTTATATTTTTAATAAA
* * *
90950092 TTTTCTATTTTTATTATA
1 TTTTATATTTTTAATAAA
90950110 TTTTATACTTTTTAATAAA
1 TTTTATA-TTTTTAATAAA
**
90950129 TTTTATATTTTCCATAAA
1 TTTTATATTTTTAATAAA
90950147 TTT
1 TTT
90950150 ATTATAGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
16 10 0.22
17 1 0.02
18 19 0.41
19 16 0.35
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTATATTTTTAATAAA
Found at i:90950233 original size:33 final size:33
Alignment explanation
Indices: 90950178--90950241 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
90950168 ATTTAAGCTT
* *
90950178 AAATAATTAAAAATATTTAATT-AGTCCCTCATA
1 AAATAATTAAAAATAGTCAATTAAG-CCCTCATA
90950211 AAATAATTTAAAAA-AGTCAATTAAGCCCTCA
1 AAATAA-TTAAAAATAGTCAATTAAGCCCTCA
90950242 AATTATATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 18 0.67
34 9 0.33
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (33 bp):
AAATAATTAAAAATAGTCAATTAAGCCCTCATA
Found at i:90952110 original size:12 final size:13
Alignment explanation
Indices: 90952089--90952123 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
90952079 AGGGGACATC
*
90952089 TGAAAATGAAAA-
1 TGAAATTGAAAAT
90952101 TGAAATTGAAAAT
1 TGAAATTGAAAAT
90952114 TGAAATTGAA
1 TGAAATTGAA
90952124 TTGAATTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26
Consensus pattern (13 bp):
TGAAATTGAAAAT
Found at i:90952112 original size:18 final size:18
Alignment explanation
Indices: 90952089--90952128 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
90952079 AGGGGACATC
90952089 TGAAAA-TGAAAATGAAAT
1 TGAAAATTGAAAATG-AAT
*
90952107 TGAAAATTGAAATTGAAT
1 TGAAAATTGAAAATGAAT
90952125 TGAA
1 TGAA
90952129 TTGATATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (18 bp):
TGAAAATTGAAAATGAAT
Found at i:90952212 original size:34 final size:34
Alignment explanation
Indices: 90952169--90952273 Score: 210
Period size: 34 Copynumber: 3.1 Consensus size: 34
90952159 GATGTTTAGA
90952169 ATTGATGAATTGAAATGAATTATTATAAATCGGG
1 ATTGATGAATTGAAATGAATTATTATAAATCGGG
90952203 ATTGATGAATTGAAATGAATTATTATAAATCGGG
1 ATTGATGAATTGAAATGAATTATTATAAATCGGG
90952237 ATTGATGAATTGAAATGAATTATTATAAATCGGG
1 ATTGATGAATTGAAATGAATTATTATAAATCGGG
90952271 ATT
1 ATT
90952274 TAAATCAATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 71 1.00
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (34 bp):
ATTGATGAATTGAAATGAATTATTATAAATCGGG
Found at i:90952878 original size:28 final size:28
Alignment explanation
Indices: 90952833--90952913 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
90952823 AAGCAACCCA
* **
90952833 AATATCACAACTTTTGTGAGCAAATTCA-
1 AATATCACAGCTCGTGTGAGCAAATT-AG
*
90952861 AATATCATAGCTCGTGTGAGCAAATTAG
1 AATATCACAGCTCGTGTGAGCAAATTAG
* * *
90952889 AATATTACAGCTTGTATGAGCAAAT
1 AATATCACAGCTCGTGTGAGCAAAT
90952914 CAATCTTATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (28 bp):
AATATCACAGCTCGTGTGAGCAAATTAG
Found at i:90953530 original size:20 final size:20
Alignment explanation
Indices: 90953505--90953549 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
90953495 AAATAAGAAG
90953505 AAAGAAACTAAGTAAGTTCA
1 AAAGAAACTAAGTAAGTTCA
* * *
90953525 AAAG-AACTTAGTGAGTTCC
1 AAAGAAACTAAGTAAGTTCA
90953544 AAAGAA
1 AAAGAA
90953550 GTGTAATCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (20 bp):
AAAGAAACTAAGTAAGTTCA
Found at i:90956680 original size:351 final size:352
Alignment explanation
Indices: 90955782--90956916 Score: 2130
Period size: 351 Copynumber: 3.2 Consensus size: 352
90955772 GAATGTGCAA
*
90955782 AACACAAAAATGGTATGCTTAAATGTTGAATTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
1 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
** * * *
90955847 CATTAACTTGAAAGTGTATAAGTTCAATCAGAGTGGTTTAGTGTCAAATAGGGCATGATGGTTAA
66 CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
90955912 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
131 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
90955977 TGCAAGTCTCAAATGTGCCTTAAAGTGCTTTGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
196 TGCAAGTCTCAAATGTGCCTTAAAGTGCTTTGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
90956042 TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
261 TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
90956107 CATTGAATGTGCAAATGGTATGAATTG
326 CATTGAATGTGCAAATGGTATGAATTG
90956134 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
1 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
90956199 CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
66 CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
90956264 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
131 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
*
90956329 TGCAAGTCTCAAATGTGCCTTAAAGTGCTTCGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
196 TGCAAGTCTCAAATGTGCCTTAAAGTGCTTTGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
90956394 TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
261 TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
90956459 CATTGAATGTGC-AATGGTATGAATTG
326 CATTGAATGTGCAAATGGTATGAATTG
*
90956485 AAAACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
1 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
90956550 CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
66 CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
90956615 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
131 ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
** *
90956680 TGCAAGTCTCATTTGTGCCTTAAAGTGCTTTGAGAATAAAAC-TTTTGTTGGGCATGAAACGGTT
196 TGCAAGTCTCAAATGTGCCTTAAAGTGCTTTGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
**
90956744 TCAAATGAAGGTTAAGACATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
261 TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
90956809 CATTGAATGTGCAAATGGTATGAATTG
326 CATTGAATGTGCAAATGGTATGAATTG
90956836 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
1 AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
*
90956901 CATTAACTTGGAAGTG
66 CATTAACTTGAAAGTG
90956917 ATTATAGAAC
Statistics
Matches: 766, Mismatches: 16, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
350 96 0.13
351 340 0.44
352 330 0.43
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (352 bp):
AACACAAAAATGGTATGCTTAAATGTTGATTTTGAATGGTTTAAAAACATGAATAAATGTTGGTT
CATTAACTTGAAAGTGTATAAGTTCAATTGGAGTGGTTTAGTGTCAAATGGGGCATGTTGGTTGA
ATTGATTGTGATTGACTTAATGTTATGTTTAATCATGTTTGTTATATGTTTAAAAGGGATTTTTA
TGCAAGTCTCAAATGTGCCTTAAAGTGCTTTGAGAATAAAACTTTTTGTTGGGCATGAAATGGTT
TCAAATGAAGGTTAAGGTATGTTTTGGTCATGTTTTGGGATCATTTGTATAGTGATTGAATGGTT
CATTGAATGTGCAAATGGTATGAATTG
Found at i:90958407 original size:98 final size:98
Alignment explanation
Indices: 90958233--90958413 Score: 213
Period size: 98 Copynumber: 1.8 Consensus size: 98
90958223 TGAACTTGTG
* * ***
90958233 ACTGCATAACCACCGTCAACTTGGACCTTGAGTTAAACTTAAACCCACGACCGTATAACTATCGT
1 ACTGCATAACCACCGTCAAATTGGACCTTGAGTTAAACTTAAACCCACGACCGTATAACCAAAAT
* *
90958298 CAACTAAGAGCCTTAGTTATACTTAAACCTGGT
66 AAACTAAGAGCCTGAGTTATACTTAAACCTGGT
* * * * *
90958331 ACTGTATAACCACCGT-AAATTGGAAGCCTT-AGTTATACTTGAACCCATGATCGTATAACCAAA
1 ACTGCATAACCACCGTCAAATTGG-A-CCTTGAGTTAAACTTAAACCCACGACCGTATAACCAAA
*
90958394 ATAAACTAGGAGCCTGAGTT
64 ATAAACTAAGAGCCTGAGTT
90958414 GCAATGTGAC
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
97 6 0.09
98 58 0.85
99 4 0.06
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (98 bp):
ACTGCATAACCACCGTCAAATTGGACCTTGAGTTAAACTTAAACCCACGACCGTATAACCAAAAT
AAACTAAGAGCCTGAGTTATACTTAAACCTGGT
Found at i:90958408 original size:49 final size:49
Alignment explanation
Indices: 90958299--90958413 Score: 110
Period size: 49 Copynumber: 2.3 Consensus size: 49
90958289 AACTATCGTC
* * ***
90958299 AACTAAGAGCCTTAGTTATACTTAAACCTGGTACTGTATAACCACCGTA
1 AACTAGGAGCCTTAGTTATACTTAAACCTGATACTGTATAACCAAAATA
* *
90958348 AA-TTGGAAGCCTTAGTTATACTTGAACCCATGAT-C-GTATAACCAAAATA
1 AACTAGG-AGCCTTAGTTATACTT-AAACC-TGATACTGTATAACCAAAATA
*
90958397 AACTAGGAGCCTGAGTT
1 AACTAGGAGCCTTAGTT
90958414 GCAATGTGAC
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
48 2 0.04
49 40 0.75
50 8 0.15
51 3 0.06
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (49 bp):
AACTAGGAGCCTTAGTTATACTTAAACCTGATACTGTATAACCAAAATA
Found at i:90965718 original size:5 final size:5
Alignment explanation
Indices: 90965694--90965718 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
90965684 AAATAAAAAA
90965694 TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT
90965719 CAATTGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:90968281 original size:12 final size:12
Alignment explanation
Indices: 90968264--90968291 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
90968254 ATATGTGTGA
90968264 AAAAAATAAAAT
1 AAAAAATAAAAT
90968276 AAAAAATAAAAT
1 AAAAAATAAAAT
90968288 AAAA
1 AAAA
90968292 TAAAGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:90968376 original size:28 final size:28
Alignment explanation
Indices: 90968334--90968390 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
90968324 TTTTGGGAAA
90968334 AAACCACGGCCAGAGGAGAAGAAAATTC
1 AAACCACGGCCAGAGGAGAAGAAAATTC
**
90968362 AAACCACGGGTAGAGGAGAAGAAAATTC
1 AAACCACGGCCAGAGGAGAAGAAAATTC
90968390 A
1 A
90968391 CTATGTCGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.26, T:0.09
Consensus pattern (28 bp):
AAACCACGGCCAGAGGAGAAGAAAATTC
Found at i:90973390 original size:6 final size:6
Alignment explanation
Indices: 90973379--90973404 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
90973369 GATTTTTTCC
90973379 AAAATG AAAATG AAAATG AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AA
90973405 GAAATGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:90975712 original size:89 final size:89
Alignment explanation
Indices: 90975545--90975709 Score: 226
Period size: 89 Copynumber: 1.8 Consensus size: 89
90975535 ATGGATGTGT
* * *
90975545 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTA
1 GCTAGTGCAAGACATGTCTAGGACATACATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTA
90975610 TGGGACATGGGCATTAAGACGAGA
66 TGGGACATGGGCATTAAGACGAGA
* * *
90975634 GCTAGTGCAAGACATGTCTAGGACATGCATCGGCCTCGAGATATGCA-AGCTAGTGTAAGA-CAT
1 GCTAGTGCAAGACATGTCTAGGACATACATCGGCCAC-A-ATATG-AGAGCCAGTGTAAGACCAT
*
90975697 GTCTGGGACATGG
63 GTATGGGACATGG
90975710 CATCGGCTGC
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 33 0.50
90 16 0.24
91 16 0.24
92 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (89 bp):
GCTAGTGCAAGACATGTCTAGGACATACATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTA
TGGGACATGGGCATTAAGACGAGA
Found at i:90983150 original size:28 final size:28
Alignment explanation
Indices: 90983117--90983244 Score: 152
Period size: 28 Copynumber: 4.6 Consensus size: 28
90983107 CCGATACCTT
* * *
90983117 GCACACTAAGTGTCGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTATC
* * *
90983145 GTACACTAAGTGCCATCCTCG-T-TACTTC
1 GCACACTAAGTGCCATTCTGGATGTA--TC
*
90983173 ACACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTATC
90983201 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTATC
*
90983229 GCATACTAAGTGCCAT
1 GCACACTAAGTGCCAT
90983245 CCCCATTATT
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 1 0.01
28 79 0.94
29 1 0.01
30 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTATC
Found at i:90989547 original size:56 final size:56
Alignment explanation
Indices: 90989346--90989563 Score: 264
Period size: 56 Copynumber: 3.9 Consensus size: 56
90989336 TGAATATTCA
* *
90989346 ATGTATCGCACACT-AGATGCCATACC-CGATACCTT-GCACACTAAGTGTCGTTTTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCTCGATA-CTTCGCACACTAAGTGCCATTTTGG
* * * * * * *
90989402 ATGTTTCGCACACTAAGTACCATCCTCGTTAATTCGCACACTAAATGCCATTCTAG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTTTGG
*
90989458 ATGTATCGCACACTAAGTGCCATCCTCGTTACTTCGCACACTAAGTGCCATTTTGG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTTTGG
**
90989514 ATGTATCGCACACTAAGTGCCATCC-CTGATACTTCGCACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCTC-GATACTTCGCACACTAAGTGCCA
90989564 CATATAATAT
Statistics
Matches: 140, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
55 5 0.04
56 133 0.95
57 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTTTGG
Found at i:90989550 original size:28 final size:28
Alignment explanation
Indices: 90989406--90989563 Score: 142
Period size: 28 Copynumber: 5.6 Consensus size: 28
90989396 TTTTGGATGT
* * *
90989406 TTCGCACACTAAGTACCATCCTCGTTAA
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * * *
90989434 TTCGCACACTAAATGCCATTCTAGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
90989461 TATCGCACACTAAGTGCCATCCTCGTTAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
** * *
90989490 TTCGCACACTAAGTGCCATTTTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
90989517 TATCGCACACTAAGTGCCATCC-CTGATAC
1 T-TCGCACACTAAGTGCCATCCTC-GATAC
**
90989546 TTCGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
90989564 CATATAATAT
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
27 2 0.02
28 99 0.96
29 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:90992849 original size:29 final size:29
Alignment explanation
Indices: 90992804--90992863 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
90992794 TCAAGTGGGA
90992804 GATAGAGTATTCCTAAAAGTATCTCCATG
1 GATAGAGTATTCCTAAAAGTATCTCCATG
*
90992833 GATAGAGTATTCTTAAAAGTATCTCCATG
1 GATAGAGTATTCCTAAAAGTATCTCCATG
90992862 GA
1 GA
90992864 AAAAAGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (29 bp):
GATAGAGTATTCCTAAAAGTATCTCCATG
Found at i:90997802 original size:24 final size:22
Alignment explanation
Indices: 90997757--90997802 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
90997747 GTGTCGAAGG
* *
90997757 CACACGGGCGTGTCCTTGTGTC
1 CACACGGGCGTGACCTTATGTC
90997779 CACACGGGCATGTGACCTTATGTC
1 CACACGGGC--GTGACCTTATGTC
90997803 ATGGAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.26
Consensus pattern (22 bp):
CACACGGGCGTGACCTTATGTC
Found at i:90999448 original size:6 final size:6
Alignment explanation
Indices: 90999434--90999480 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
90999424 AGCAGGCTAG
*
90999434 AAAAGA AAAATA AAAAGA AAAAGA ATAAA-A GAAAAGA AAAATGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA A-AAAGA -AAAAGA AAAA-GA AAA
90999481 GAATGAGGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
6 25 0.71
7 10 0.29
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (6 bp):
AAAAGA
Found at i:90999474 original size:25 final size:26
Alignment explanation
Indices: 90999434--90999484 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
90999424 AGCAGGCTAG
*
90999434 AAAAGAAAAATAAAAA-GAAAAAGAAT
1 AAAAGAAAAAGAAAAATG-AAAAGAAT
90999460 AAAAG-AAAAGAAAAATGAAAAGAAT
1 AAAAGAAAAAGAAAAATGAAAAGAAT
90999485 GAGGGAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (26 bp):
AAAAGAAAAAGAAAAATGAAAAGAAT
Found at i:90999907 original size:13 final size:13
Alignment explanation
Indices: 90999889--90999914 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90999879 TCATATATAA
90999889 TAAAAATTACATC
1 TAAAAATTACATC
90999902 TAAAAATTACATC
1 TAAAAATTACATC
90999915 ATAATAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAAAATTACATC
Found at i:91010539 original size:26 final size:27
Alignment explanation
Indices: 91010510--91010580 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 27
91010500 AGCATAGCTG
*
91010510 CCAGAAACAGTAAATGTGGCA-AGCCA
1 CCAGAAACAGTAAATGTGGCACAACCA
* * *
91010536 CCAGTATCAGTAATTGTGGCACAACCA
1 CCAGAAACAGTAAATGTGGCACAACCA
*
91010563 CCA-ATAACAGTTAATGTG
1 CCAGA-AACAGTAAATGTG
91010581 ACATAGTCAC
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 18 0.51
27 17 0.49
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (27 bp):
CCAGAAACAGTAAATGTGGCACAACCA
Found at i:91010573 original size:27 final size:26
Alignment explanation
Indices: 91010515--91010580 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
91010505 AGCTGCCAGA
* *
91010515 AACAGTAAATGTGGCAAGCCACCAGT
1 AACAGTAAATGTGGCAAACCACCAAT
* *
91010541 ATCAGTAATTGTGGCACAACCACCAAT
1 AACAGTAAATGTGGCA-AACCACCAAT
*
91010568 AACAGTTAATGTG
1 AACAGTAAATGTG
91010581 ACATAGTCAC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (26 bp):
AACAGTAAATGTGGCAAACCACCAAT
Found at i:91010839 original size:81 final size:81
Alignment explanation
Indices: 91010739--91010956 Score: 323
Period size: 81 Copynumber: 2.7 Consensus size: 81
91010729 TATAATTGTT
* * *
91010739 ATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAAGGGTATTACTGTTATTTTACCCTA
1 ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTA
91010804 CAAGGGCATTATGGCC
66 CAAGGGCATTATGGCC
*
91010820 ATTTTACCCTACAGGGGTATTAC-AGTCATTTTACCCTAC-AGAGATATTACGGTCATTTTACCC
1 ATTTTACCCTACAGGGGTATTACGA-TCATTTTACCCTACAAG-GGTATTACGGTCATTTTACCC
*
91010883 TACAAGGGCATTATGGTC
64 TACAAGGGCATTATGGCC
* * * *
91010901 ATCTTACCCTACAGTGGTATTACGGTCATTTTACCCTACAGGGGTATTACGGTCAT
1 ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAAGGGTATTACGGTCAT
91010957 ATTATAAATT
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
80 3 0.02
81 119 0.97
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTACAAGGGTATTACGGTCATTTTACCCTA
CAAGGGCATTATGGCC
Found at i:91010950 original size:27 final size:27
Alignment explanation
Indices: 91010739--91010956 Score: 283
Period size: 27 Copynumber: 8.1 Consensus size: 27
91010729 TATAATTGTT
* *
91010739 ATTTTACCATACAGGGGTATTACGATC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
91010766 ATTTTACCCTACAAGGGTATTACTGTT
1 ATTTTACCCTACAGGGGTATTACGGTC
* * * *
91010793 ATTTTACCCTACAAGGGCATTATGGCC
1 ATTTTACCCTACAGGGGTATTACGGTC
*
91010820 ATTTTACCCTACAGGGGTATTACAGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* *
91010847 ATTTTACCCTACAGAGATATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
91010874 ATTTTACCCTACAAGGGCATTATGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* *
91010901 ATCTTACCCTACAGTGGTATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
91010928 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
91010955 AT
1 AT
91010957 ATTATAAATT
Statistics
Matches: 161, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGTATTACGGTC
Found at i:91010990 original size:27 final size:28
Alignment explanation
Indices: 91010960--91011023 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
91010950 CGGTCATATT
* *
91010960 ATAAATTTA-GGGTATTTTGGTAATTTC
1 ATAAATTCAGGGGTATTTTGGTAACTTC
91010987 ATAAA-TCAGGGGTATTTTGGTAACTTC
1 ATAAATTCAGGGGTATTTTGGTAACTTC
*
91011014 ACAAA-TCAGG
1 ATAAATTCAGG
91011024 AATATTTCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (28 bp):
ATAAATTCAGGGGTATTTTGGTAACTTC
Done.