Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 303 of 345
Found at i:91297609 original size:40 final size:39
Alignment explanation
Indices: 91297551--91297636 Score: 127
Period size: 40 Copynumber: 2.2 Consensus size: 39
91297541 TATATATATA
* *
91297551 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCA-GTT
* *
91297591 TAGCCGAAGCTATTTCAAACTGCACACTAAGTGCCAGTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCAGTT
91297630 TAGCCGA
1 TAGCCGA
91297637 TAAATCGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 9 0.21
40 33 0.79
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCAGTT
Found at i:91301246 original size:67 final size:66
Alignment explanation
Indices: 91301138--91301266 Score: 181
Period size: 67 Copynumber: 1.9 Consensus size: 66
91301128 CACACTCGTT
* *
91301138 TCTTAGGCCGTGTGGACATTCGATATGAGGCACATAGTCGTGTCCCAGACC-GTGTAACTCTCCC
1 TCTTAAGCCGTGAGGACATTCGATATGAGG-ACATAGTCGTGTCCCAG-CCTGTGTAACTCTCCC
91301202 GTG
64 GTG
*
91301205 TCTTAAGCCGTGAGGACATTCGATGTGAGG-CATACGATCGTGTCCCAGCCTGTGTAACTCTC
1 TCTTAAGCCGTGAGGACATTCGATATGAGGACATA-G-TCGTGTCCCAGCCTGTGTAACTCTC
91301267 TGACTTGGGC
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
65 4 0.07
66 3 0.05
67 49 0.88
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.27
Consensus pattern (66 bp):
TCTTAAGCCGTGAGGACATTCGATATGAGGACATAGTCGTGTCCCAGCCTGTGTAACTCTCCCGT
G
Found at i:91301400 original size:72 final size:73
Alignment explanation
Indices: 91301283--91301436 Score: 238
Period size: 72 Copynumber: 2.1 Consensus size: 73
91301273 GGGCCGAACA
* **
91301283 GCCAAGACACACGCCCGTCTGCTAGGCCGTGTGAGCATATTAATTTGTGAAATTAAGGTGCAGGG
1 GCCAAGCCACACGCCCGTCTGCTAGGCCGTGTGAGCATATTAATTTGTGAAATTAAAATGCAGGG
* *
91301348 GTCCCA-T
66 GTCACACG
* *
91301355 GCCAAGCCACATGCCCGTGTGCTAGGCCGTGTGAGCATATTAATTTGTGAAATTAAAATGCAGGG
1 GCCAAGCCACACGCCCGTCTGCTAGGCCGTGTGAGCATATTAATTTGTGAAATTAAAATGCAGGG
91301420 GTCACACG
66 GTCACACG
91301428 GCCAAGCCA
1 GCCAAGCCA
91301437 TACACTTGTG
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 65 0.88
73 9 0.12
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (73 bp):
GCCAAGCCACACGCCCGTCTGCTAGGCCGTGTGAGCATATTAATTTGTGAAATTAAAATGCAGGG
GTCACACG
Found at i:91301959 original size:42 final size:42
Alignment explanation
Indices: 91301912--91302074 Score: 130
Period size: 42 Copynumber: 3.9 Consensus size: 42
91301902 TCAGAAGCCC
* *
91301912 AAAGGTTGAATAGAAGCACATAAGTGCTAAACAGAAACCCAT
1 AAAGGTTGAACAGAAGCACATAAGAGCTAAACAGAAACCCAT
* * * * *
91301954 AAAGGTTGAACGGAAGCTCATAAGAGCTGAACGGAAACTCAT
1 AAAGGTTGAACAGAAGCACATAAGAGCTAAACAGAAACCCAT
** * * * * * *
91301996 ACGGGTTAAACAGAAGCTCAAAAGAGCTTAACGGAAACTCAT
1 AAAGGTTGAACAGAAGCACATAAGAGCTAAACAGAAACCCAT
* * * * *
91302038 -ATGAGTTGAACAGAAGCTCGTGAGAGCTAAACGGAAA
1 AAAG-GTTGAACAGAAGCACATAAGAGCTAAACAGAAA
91302075 GTAAACACGA
Statistics
Matches: 100, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 1 0.01
42 99 0.99
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
AAAGGTTGAACAGAAGCACATAAGAGCTAAACAGAAACCCAT
Found at i:91301975 original size:21 final size:22
Alignment explanation
Indices: 91301951--91302056 Score: 80
Period size: 21 Copynumber: 5.0 Consensus size: 22
91301941 AACAGAAACC
91301951 CATAAAG-GTTGAACGGAAGCT
1 CATAAAGAGTTGAACGGAAGCT
* *
91301972 CAT-AAGAGCTGAACGGAAACT
1 CATAAAGAGTTGAACGGAAGCT
* * * *
91301993 CAT-ACGGGTTAAACAGAAGCT
1 CATAAAGAGTTGAACGGAAGCT
*
91302014 CA-AAAGAGCTT-AACGGAAACT
1 CATAAAGAG-TTGAACGGAAGCT
* *
91302035 CAT-ATGAGTTGAACAGAAGCT
1 CATAAAGAGTTGAACGGAAGCT
91302056 C
1 C
91302057 GTGAGAGCTA
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
20 5 0.08
21 58 0.89
22 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (22 bp):
CATAAAGAGTTGAACGGAAGCT
Found at i:91319333 original size:20 final size:21
Alignment explanation
Indices: 91319294--91319333 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
91319284 CATGTTTGCT
* *
91319294 TTCCGTTTAGCTCTTATGAGC
1 TTCCGTTTAACTCATATGAGC
91319315 TTCCG-TTAACTCATATGAG
1 TTCCGTTTAACTCATATGAG
91319334 TTTCAGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (21 bp):
TTCCGTTTAACTCATATGAGC
Found at i:91320615 original size:115 final size:116
Alignment explanation
Indices: 91320411--91320642 Score: 385
Period size: 115 Copynumber: 2.0 Consensus size: 116
91320401 GGACAATTAA
* *
91320411 ACAAACTTGTTTATTCTTTCAAAAGCACTCACAAAAATCTCATTCCACAATAAGCAAATAAATGC
1 ACAAACTTATTTATTCTTTCAAAAGCACTCACAAAAA-CTCATTCCACAATAAACAAATAAATGC
* **
91320476 TCTCAATCCCCTATACAAATCCTATGTAACTCTCTTAATATATAAGAGTTTT
65 TCTCAATCCCCTATACAAAACCTATACAACTCTCTTAATATATAAGAGTTTT
* *
91320528 ACAAACTTATTTATTCTTTCAAATGCACTCACAAAAA-TCATTCCACAATAAACAAATAAGTGCT
1 ACAAACTTATTTATTCTTTCAAAAGCACTCACAAAAACTCATTCCACAATAAACAAATAAATGCT
91320592 CTCAATCCCCTATACAAAACCTATACAACTCTCTTAATATATAAGAGTTTT
66 CTCAATCCCCTATACAAAACCTATACAACTCTCTTAATATATAAGAGTTTT
91320643 TGAGACTTCC
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
115 73 0.68
117 35 0.32
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (116 bp):
ACAAACTTATTTATTCTTTCAAAAGCACTCACAAAAACTCATTCCACAATAAACAAATAAATGCT
CTCAATCCCCTATACAAAACCTATACAACTCTCTTAATATATAAGAGTTTT
Found at i:91321187 original size:17 final size:17
Alignment explanation
Indices: 91321164--91321207 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
91321154 TACGAACTTT
*
91321164 TAATTTTTTATATTTTA
1 TAATTTTTAATATTTTA
* *
91321181 TATTTTTTAATTTTTTA
1 TAATTTTTAATATTTTA
91321198 TAATTTTTAA
1 TAATTTTTAA
91321208 ATTATTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TAATTTTTAATATTTTA
Found at i:91321188 original size:9 final size:9
Alignment explanation
Indices: 91321161--91321206 Score: 55
Period size: 8 Copynumber: 5.6 Consensus size: 9
91321151 TTTTACGAAC
91321161 TTTTA-ATT
1 TTTTATATT
91321169 TTTTATA--
1 TTTTATATT
91321176 TTTTATATT
1 TTTTATATT
91321185 TTTTA-ATT
1 TTTTATATT
*
91321193 TTTTATAAT
1 TTTTATATT
91321202 TTTTA
1 TTTTA
91321207 AATTATTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
7 7 0.21
8 13 0.39
9 13 0.39
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTATATT
Found at i:91329926 original size:20 final size:20
Alignment explanation
Indices: 91329901--91329938 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91329891 CTGTTTCATG
* *
91329901 AAAAATTTTCTAAGTTTTTC
1 AAAAATTTCCAAAGTTTTTC
91329921 AAAAATTTCCAAAGTTTT
1 AAAAATTTCCAAAGTTTT
91329939 CGGTTTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (20 bp):
AAAAATTTCCAAAGTTTTTC
Found at i:91332402 original size:44 final size:44
Alignment explanation
Indices: 91332280--91332404 Score: 178
Period size: 44 Copynumber: 2.8 Consensus size: 44
91332270 TTGATTTGAG
* * *
91332280 AAAAGGGAAAAACCATGATTGAAAGATATCATGACATTATACTC
1 AAAAAGGAAATACCATGATTGAAAGATATCATGGCATTATACTC
* * *
91332324 AAAAAGGAAATACAATGATTCAAAGATATCATGGCATTATATTC
1 AAAAAGGAAATACCATGATTGAAAGATATCATGGCATTATACTC
* *
91332368 AAAAAGGAAATACCATGGTTGAAAGATATTATGGCAT
1 AAAAAGGAAATACCATGATTGAAAGATATCATGGCAT
91332405 CCCTGAAACA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (44 bp):
AAAAAGGAAATACCATGATTGAAAGATATCATGGCATTATACTC
Found at i:91337841 original size:2 final size:2
Alignment explanation
Indices: 91337781--91337821 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
91337771 GTGTATTCTT
*
91337781 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91337822 TTTTTATTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:91338873 original size:39 final size:39
Alignment explanation
Indices: 91338819--91338896 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
91338809 CAGCTTGGCG
91338819 ACTCCACTGGGGACAAATAAGAGGGTCAAGCCACGATTT
1 ACTCCACTGGGGACAAATAAGAGGGTCAAGCCACGATTT
91338858 ACTCCACTGGGGACAAATAAGAGGGTCAAGCCACGATTT
1 ACTCCACTGGGGACAAATAAGAGGGTCAAGCCACGATTT
91338897 GATTAATTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (39 bp):
ACTCCACTGGGGACAAATAAGAGGGTCAAGCCACGATTT
Found at i:91345331 original size:80 final size:80
Alignment explanation
Indices: 91345214--91345363 Score: 275
Period size: 80 Copynumber: 1.9 Consensus size: 80
91345204 TCATATTGAG
91345214 CAAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATAA-AGATAATTATTCTTAGAT
1 CAAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATAAGA-ATAATTATTCTTAGAT
91345278 TCTTTTGACTTTCTTT
65 TCTTTTGACTTTCTTT
*
91345294 CAAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACGAATAATTATTCTTAGATT
1 CAAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATAAGAATAATTATTCTTAGATT
91345359 CTTTT
66 CTTTT
91345364 ATTCTTTGGA
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
80 67 0.99
81 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (80 bp):
CAAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATAAGAATAATTATTCTTAGATT
CTTTTGACTTTCTTT
Found at i:91346550 original size:19 final size:21
Alignment explanation
Indices: 91346506--91346552 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
91346496 ATTGAGTGGT
91346506 TAATTAGACTTTAATTAAGTA
1 TAATTAGACTTTAATTAAGTA
*
91346527 AAATTAG-C-TTAATTAAG-A
1 TAATTAGACTTTAATTAAGTA
91346545 GTAATTAG
1 -TAATTAG
91346553 TGGAAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 1 0.04
21 6 0.26
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (21 bp):
TAATTAGACTTTAATTAAGTA
Found at i:91346886 original size:5 final size:5
Alignment explanation
Indices: 91346862--91346917 Score: 67
Period size: 5 Copynumber: 10.6 Consensus size: 5
91346852 AAGAAATTGT
* *
91346862 TATTA TATGA TATTA TTATTA TATTA TAGTA TATTA TATTATA TATTA
1 TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TA-T-TA TATTA
91346910 TATTA TAT
1 TATTA TAT
91346918 AAATAAGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
5 33 0.75
6 7 0.16
7 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:91346908 original size:12 final size:12
Alignment explanation
Indices: 91346865--91346918 Score: 65
Period size: 12 Copynumber: 4.3 Consensus size: 12
91346855 AAATTGTTAT
*
91346865 TATATGATATTA
1 TATATTATATTA
91346877 T-TATTATATTATA
1 TATATTATA-T-TA
91346890 GTATATTATATTA
1 -TATATTATATTA
91346903 TATATTATATTA
1 TATATTATATTA
91346915 TATA
1 TATA
91346919 AATAAGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
11 6 0.16
12 18 0.49
13 4 0.11
14 2 0.05
15 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (12 bp):
TATATTATATTA
Found at i:91348035 original size:15 final size:15
Alignment explanation
Indices: 91348015--91348071 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
91348005 CGATGAATTT
91348015 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
91348030 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
91348045 ATTGAATTTATATTG
1 ATTGAATTTATATTG
91348060 ATTGAA-TTATAT
1 ATTGAATTTATAT
91348072 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:91348474 original size:23 final size:23
Alignment explanation
Indices: 91348444--91348530 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
91348434 GCTTTACCGA
* *
91348444 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
91348467 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
91348488 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
91348510 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
91348531 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:91352814 original size:19 final size:21
Alignment explanation
Indices: 91352770--91352816 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
91352760 ATTGAGTGGT
91352770 TAATTAGACTTTAATTAAGTA
1 TAATTAGACTTTAATTAAGTA
*
91352791 AAATTAG-C-TTAATTAAG-A
1 TAATTAGACTTTAATTAAGTA
91352809 GTAATTAG
1 -TAATTAG
91352817 TGGAAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 1 0.04
21 6 0.26
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (21 bp):
TAATTAGACTTTAATTAAGTA
Found at i:91353022 original size:21 final size:22
Alignment explanation
Indices: 91352992--91353032 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
91352982 TTATTTTATT
*
91352992 ATATTGTAAT-TTATATTAATG
1 ATATTATAATATTATATTAATG
*
91353013 ATATTATAATATTATTTTAA
1 ATATTATAATATTATATTAA
91353033 CAATTGTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (22 bp):
ATATTATAATATTATATTAATG
Found at i:91353149 original size:5 final size:5
Alignment explanation
Indices: 91353125--91353180 Score: 67
Period size: 5 Copynumber: 10.6 Consensus size: 5
91353115 AAGAAATTGT
* *
91353125 TATTA TATGA TATTA TTATTA TATTA TAGTA TATTA TATTATA TATTA
1 TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TA-T-TA TATTA
91353173 TATTA TAT
1 TATTA TAT
91353181 AAATAAGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
5 33 0.75
6 7 0.16
7 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:91353171 original size:12 final size:12
Alignment explanation
Indices: 91353128--91353181 Score: 65
Period size: 12 Copynumber: 4.3 Consensus size: 12
91353118 AAATTGTTAT
*
91353128 TATATGATATTA
1 TATATTATATTA
91353140 T-TATTATATTATA
1 TATATTATA-T-TA
91353153 GTATATTATATTA
1 -TATATTATATTA
91353166 TATATTATATTA
1 TATATTATATTA
91353178 TATA
1 TATA
91353182 AATAAGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
11 6 0.16
12 18 0.49
13 4 0.11
14 2 0.05
15 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (12 bp):
TATATTATATTA
Found at i:91354298 original size:15 final size:15
Alignment explanation
Indices: 91354278--91354334 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
91354268 CGATGAATTT
91354278 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
91354293 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
91354308 ATTGAATTTATATTG
1 ATTGAATTTATATTG
91354323 ATTGAA-TTATAT
1 ATTGAATTTATAT
91354335 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:91354735 original size:23 final size:23
Alignment explanation
Indices: 91354705--91354791 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
91354695 GCTTTACCAA
* *
91354705 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
91354728 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
91354749 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
91354771 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
91354792 ACTGACCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:91358718 original size:65 final size:65
Alignment explanation
Indices: 91358614--91358809 Score: 311
Period size: 65 Copynumber: 3.0 Consensus size: 65
91358604 ATCTTACCCA
*
91358614 TATTGAATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTACGCTCTCAATAAATTTCCTTCT
1 TATTGAATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
* * * *
91358679 TATTGTATTTTCTATATTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATTAATTTCCTTCT
1 TATTGAATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
* * * *
91358744 TATTGCATTTGCTATCTTTGATTAATTTATTCATTTCGAGCTATGCTCCCAATCAATTTCCTTCT
1 TATTGAATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
91358809 T
1 T
91358810 GTCCACTGTA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 120 1.00
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.50
Consensus pattern (65 bp):
TATTGAATTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATAAATTTCCTTCT
Found at i:91359635 original size:44 final size:44
Alignment explanation
Indices: 91359331--91359730 Score: 236
Period size: 44 Copynumber: 9.0 Consensus size: 44
91359321 CCATAGAGAG
* * * * **
91359331 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCTATTAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAA
* * * * * **
91359375 CCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCTATTAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAA
* * * * ***
91359419 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATAGTGGA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAA
* * ** *
91359464 TCTTATTTCCCTGAAGTTACAGTGGAATAGATTACAAGTTACAAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATT-GAAGTTACAAA
** * ** * *
91359509 TCCCATACCCCTGAAGTTATAGTGG-GACGGATTGAAGTTATTATGACAAT
1 TCTTATATCCCTGAAGTTGCAGTGGAG-CAGATTGAAG----T-T-ACAAA
* * *
91359559 TCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAA
* * **
91359603 TCTCATATCCCTGAAGTTGCAGAGGAGCAGATT--A-CCACAAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAA
* * * *
91359644 TCTTATCTCCCT-AAGGTGGCAGTGGAGCAGAGTGAAGATAGCAAA
1 TCTTATATCCCTGAA-GTTGCAGTGGAGCAGATTGAAGTTA-CAAA
* * * *
91359689 TCTTAT-TTCCTAAAGTTGCAGTGGAACAGATTAAAGTTACAA
1 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAA
91359731 GTCATAAATT
Statistics
Matches: 282, Mismatches: 58, Indels: 33
0.76 0.16 0.09
Matches are distributed among these distances:
40 2 0.01
41 30 0.11
42 1 0.00
43 4 0.01
44 139 0.49
45 67 0.24
46 6 0.02
48 1 0.00
49 1 0.00
50 30 0.11
51 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
TCTTATATCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAA
Found at i:91359705 original size:85 final size:85
Alignment explanation
Indices: 91359554--91359721 Score: 205
Period size: 85 Copynumber: 2.0 Consensus size: 85
91359544 AGTTATTATG
* * * * * * *
91359554 ACAATTCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAATCTCATATCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTGGCAGTGGAGCAGAGTGAAGATACAAATCTCATATCCCTAAAG
*
91359619 TTGCAGAGGAGCAGATTACC
66 TTGCAGAGGAACAGATTACC
* *
91359639 ACAAATCTTATCTCCCT-AAGGTGGCAGTGGAGCAGAGTGAAGATAGCAAATCTTAT-TTCCTAA
1 ACAAATCTTATCTCCCTGAA-GTGGCAGTGGAGCAGAGTGAAGATA-CAAATCTCATATCCCTAA
*
91359702 AGTTGCAGTGGAACAGATTA
64 AGTTGCAGAGGAACAGATTA
91359722 AAGTTACAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 2 0.03
85 59 0.84
86 9 0.13
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (85 bp):
ACAAATCTTATCTCCCTGAAGTGGCAGTGGAGCAGAGTGAAGATACAAATCTCATATCCCTAAAG
TTGCAGAGGAACAGATTACC
Found at i:91364292 original size:18 final size:20
Alignment explanation
Indices: 91364269--91364309 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
91364259 GTAAAATATT
91364269 AAAAAATAAAT-A-TTTTTA
1 AAAAAATAAATAATTTTTTA
*
91364287 AAAAAATACATAATTTTTTA
1 AAAAAATAAATAATTTTTTA
91364307 AAA
1 AAA
91364310 TTACTTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 1 0.05
20 9 0.45
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAATAAATAATTTTTTA
Found at i:91370151 original size:24 final size:24
Alignment explanation
Indices: 91370021--91370178 Score: 113
Period size: 24 Copynumber: 6.6 Consensus size: 24
91370011 CAACCGATTT
* ** *
91370021 CGCACACATAGTGCTAAACAAATT
1 CGCACACATAGTGCCATTCAAATC
* *
91370045 CGCACACATAGTGCCATGCTACA-C
1 CGCACACATAGTGCCATTC-AAATC
* *
91370069 CGCACACATAGTGCC-TTGAAGATT
1 CGCACACATAGTGCCATTCAA-ATC
* * ** * * *
91370093 CACTCATGTATTGACATCCAAATC
1 CGCACACATAGTGCCATTCAAATC
** *
91370117 AACACACATAGTGCCATTCAATTC
1 CGCACACATAGTGCCATTCAAATC
91370141 CGCACACATAGTGCCATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
91370165 CGCACACTTAGTGC
1 CGCACACATAGTGC
91370179 TAATGTTGAC
Statistics
Matches: 100, Mismatches: 30, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 92 0.92
25 5 0.05
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATC
Found at i:91372688 original size:18 final size:17
Alignment explanation
Indices: 91372647--91372689 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
91372637 TTCAAAACTC
*
91372647 AATTTAATACCTTTTTT
1 AATTTAATACCTTATTT
*
91372664 AAATTAATACACTTATTT
1 AATTTAATAC-CTTATTT
*
91372682 ATTTTAAT
1 AATTTAAT
91372690 TCAACCGATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTTAATACCTTATTT
Found at i:91380571 original size:14 final size:15
Alignment explanation
Indices: 91380522--91380572 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
91380512 TAAACGTTTT
*
91380522 TGAATTTGAATGTGTA
1 TGAATTT-AATATGTA
* *
91380538 TGATTTTTATATGT-
1 TGAATTTAATATGTA
91380552 TGAATTTAAT-TGTA
1 TGAATTTAATATGTA
91380566 TGAATTT
1 TGAATTT
91380573 CTATGGTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 3 0.10
14 15 0.52
15 5 0.17
16 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (15 bp):
TGAATTTAATATGTA
Found at i:91380581 original size:28 final size:30
Alignment explanation
Indices: 91380521--91380583 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
91380511 ATAAACGTTT
* *
91380521 TTGAATTTGAATGTGTATGATTTTTATATG
1 TTGAATTTGAATGTGTATGATTTCTATAGG
91380551 TTGAATTT-AAT-TGTATGAATTTCTAT-GG
1 TTGAATTTGAATGTGTATG-ATTTCTATAGG
91380579 TTGAA
1 TTGAA
91380584 GCCGAATGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 12 0.40
29 10 0.33
30 8 0.27
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.51
Consensus pattern (30 bp):
TTGAATTTGAATGTGTATGATTTCTATAGG
Found at i:91380702 original size:39 final size:42
Alignment explanation
Indices: 91380659--91380783 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 42
91380649 ATAAGATTAA
91380659 CTTTG-TAACAGTG-AT-ATATCAAGCTTATTGCCTAGCAGG
1 CTTTGATAACAGTGTATGATATCAAGCTTATTGCCTAGCAGG
** * *
91380698 CTTTGATGCCGGTGTATGATATCAGGCTTATTGCCTAGCAGG
1 CTTTGATAACAGTGTATGATATCAAGCTTATTGCCTAGCAGG
** * * * *
91380740 CTTTGATGCCGGTGTATGATATCAGGTTTATTACCTAGCAGG
1 CTTTGATAACAGTGTATGATATCAAGCTTATTGCCTAGCAGG
91380782 CT
1 CT
91380784 CTGTGCCAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 5 0.06
40 5 0.06
41 2 0.03
42 65 0.84
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (42 bp):
CTTTGATAACAGTGTATGATATCAAGCTTATTGCCTAGCAGG
Found at i:91380721 original size:42 final size:42
Alignment explanation
Indices: 91380674--91380783 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
91380664 TAACAGTGAT
*
91380674 ATATCAAGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
91380716 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
91380758 ATATCAGGTTTATTACCTAGCAGGCT
1 ATATCAGGCTTATTGCCTAGCAGGCT
91380784 CTGTGCCAGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:91385185 original size:26 final size:26
Alignment explanation
Indices: 91385155--91385262 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
91385145 TGAAATTCCC
91385155 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91385181 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
91385207 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
91385233 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91385259 ATCA
1 ATCA
91385263 ATTTTTATTA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91389298 original size:25 final size:25
Alignment explanation
Indices: 91389270--91389326 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
91389260 CTTCCCGATT
* *
91389270 ATGGCTCTCATGAGATCCCCGTTAC
1 ATGGCTCACATGAGATCCCCATTAC
* * *
91389295 ATGGCTCACATGAGCTTCCCATTAT
1 ATGGCTCACATGAGATCCCCATTAC
91389320 ATGGCTC
1 ATGGCTC
91389327 GAAAGAGCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (25 bp):
ATGGCTCACATGAGATCCCCATTAC
Found at i:91389363 original size:25 final size:25
Alignment explanation
Indices: 91389295--91389363 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
91389285 TCCCCGTTAC
91389295 ATGGCTC-ACATGAGCTTCCCATTAT
1 ATGGCTCGA-ATGAGCTTCCCATTAT
* *
91389320 ATGGCTCGAAAGAGCTTCCCGTTAT
1 ATGGCTCGAATGAGCTTCCCATTAT
* *
91389345 GT-GCTCGTATGAGCATTCC
1 ATGGCTCGAATGAGC-TTCC
91389364 TGAATATGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 10 0.27
25 26 0.70
26 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (25 bp):
ATGGCTCGAATGAGCTTCCCATTAT
Found at i:91391340 original size:11 final size:10
Alignment explanation
Indices: 91391318--91391351 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
91391308 ATGAGATATT
91391318 TTATTATTTA
1 TTATTATTTA
91391328 TTATTATTTTA
1 TTATTA-TTTA
91391339 TTATTAATTTA
1 TTATT-ATTTA
91391350 TT
1 TT
91391352 TAATATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.27
11 15 0.68
12 1 0.05
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTATTTA
Found at i:91394063 original size:13 final size:13
Alignment explanation
Indices: 91394025--91394063 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
91394015 AAAAGTTTAA
91394025 AAAAATAAAAAAT
1 AAAAATAAAAAAT
91394038 AAAAA-AATAAAAT
1 AAAAATAA-AAAAT
*
91394051 AAAAATAAGAAAT
1 AAAAATAAAAAAT
91394064 GAAATAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:91394124 original size:3 final size:3
Alignment explanation
Indices: 91394118--91394176 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
91394108 AGAAGAAGTG
91394118 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91394166 ATA ATA ATA AT
1 ATA ATA ATA AT
91394177 GTAATAAGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:91394183 original size:8 final size:7
Alignment explanation
Indices: 91394113--91394187 Score: 69
Period size: 6 Copynumber: 11.9 Consensus size: 7
91394103 ACAAAAGAAG
*
91394113 AAGTGAT
1 AAGTAAT
91394120 AA-TAAT
1 AAGTAAT
91394126 AA-TAAT
1 AAGTAAT
91394132 AA-TAAT
1 AAGTAAT
91394138 AA-TAAT
1 AAGTAAT
91394144 AA-TAAT
1 AAGTAAT
91394150 AA-TAAT
1 AAGTAAT
91394156 AA-TAAT
1 AAGTAAT
91394162 AA-TAAT
1 AAGTAAT
91394168 AA-TAAT
1 AAGTAAT
91394174 AATGTAAT
1 AA-GTAAT
91394182 AAGTAA
1 AAGTAA
91394188 ATAAACATAA
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
6 53 0.82
7 6 0.09
8 6 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (7 bp):
AAGTAAT
Found at i:91394374 original size:35 final size:35
Alignment explanation
Indices: 91394335--91394404 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
91394325 CAATGCTAAT
91394335 AATATAT-TAAATTAACTAACTTAAAAATAAAATAG
1 AATATATAT-AATTAACTAACTTAAAAATAAAATAG
*
91394370 AATATATATAATTAACTAACTTAAAATTAAAATAG
1 AATATATATAATTAACTAACTTAAAAATAAAATAG
91394405 CAAAAGTAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 32 0.97
36 1 0.03
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.33
Consensus pattern (35 bp):
AATATATATAATTAACTAACTTAAAAATAAAATAG
Found at i:91396009 original size:88 final size:88
Alignment explanation
Indices: 91395875--91396140 Score: 374
Period size: 88 Copynumber: 3.0 Consensus size: 88
91395865 GGTTTGTGAT
* * * * *
91395875 TTGTAGCTTCAATC-GCTCCAATGCCATTTCAGGGAGAAGAGGTTTGTAGCTTCGATCCACTCCG
1 TTGTGGCTTCAAGCAGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
*
91395939 CTGGAACTTCAAAGAGATACGAA
66 CTGGAACTTCAAGGAGATACGAA
** * *
91395962 TTGTGGCTTTGAGCAGCTCCAGTACCATTTCAGGGAAAAGAGATTTGTAGCTTCGATCTACTCCG
1 TTGTGGCTTCAAGCAGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
91396027 CTGGAACTTCAAGGAGATACGAA
66 CTGGAACTTCAAGGAGATACGAA
** *
91396050 TTGTGGCTTCAAGCTTC-CCTAGTGCCATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
1 TTGTGGCTTCAAGCAGCTCC-AGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC
* *
91396114 GTTGAAACTTCAAGGAGATACGAA
65 GCTGGAACTTCAAGGAGATACGAA
91396138 TTG
1 TTG
91396141 ATGATTTCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
87 12 0.08
88 146 0.92
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (88 bp):
TTGTGGCTTCAAGCAGCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCG
CTGGAACTTCAAGGAGATACGAA
Found at i:91396171 original size:88 final size:87
Alignment explanation
Indices: 91395905--91396175 Score: 291
Period size: 88 Copynumber: 3.1 Consensus size: 87
91395895 ATGCCATTTC
* * * *
91395905 AGGGAGAAGAGGTTTGTAGCTTCGATCCACTCCGCTGGAACTTCAAAGAGATACGAATTGTGGCT
1 AGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGT-GAT
* * ***
91395970 TT-GAGC-AGCTCCAGTACCATTT
65 TTCAAGCTA-CTCCACTACTGCTT
* **
91395992 CAGGGAAAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGC
1 -AGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGAT
*
91396057 TTCAAGCT--TCC-CTAGTGCCATTTT
65 TTCAAGCTACTCCACTACTG-C---TT
* *
91396081 AGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGTTGAAACTTCAAGGAGATACGAATTGATGAT
1 AGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTG-TGAT
*
91396146 TTCAACCTACTCCACTACTGCTT
65 TTCAAGCTACTCCACTACTGCTT
91396169 AGGGAGA
1 AGGGAGA
91396176 TAGGATGGTG
Statistics
Matches: 154, Mismatches: 19, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 3 0.02
88 126 0.82
89 11 0.07
91 4 0.03
92 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (87 bp):
AGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATACGAATTGTGATT
TCAAGCTACTCCACTACTGCTT
Found at i:91396340 original size:86 final size:87
Alignment explanation
Indices: 91396192--91396396 Score: 295
Period size: 86 Copynumber: 2.4 Consensus size: 87
91396182 GGTGGCTTAA
* * * *
91396192 ATCTACTCCACTATTGCTTAGGGAGACAAGATTTGTAATTTTCAGCCTGTTACCCTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAA-TTTCAGCCTGTTACCCTACTGCTTAG
* *
91396257 GGGGTTAAGGCTCACCGTCTTTG
65 GGGGTTAAGGCCCACCATCTTTG
* * *
91396280 ATTTACTCCACTACTGCTTAGGGAGATAAGATCTATAA-TTCAGCCTGTTACCCTATTGCTTATG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATTTCAGCCTGTTACCCTACTGCTTAGG
*
91396344 GGGTTAAGGCCCATCATCTTTG
66 GGGTTAAGGCCCACCATCTTTG
*
91396366 ATCTATTCCACTACTGCTTAGGGAGATAAGA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGA
91396397 CTTGCTATCT
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 72 0.69
88 33 0.31
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (87 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCCCACCATCTTTG
Found at i:91396440 original size:45 final size:45
Alignment explanation
Indices: 91396385--91396490 Score: 176
Period size: 45 Copynumber: 2.4 Consensus size: 45
91396375 ACTACTGCTT
91396385 AGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACCGCAACTTC
1 AGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACCGCAACTTC
* * *
91396430 AGGGAGATAAGACCTGCTATTTTTAGTCTGCTCCACTGCAACTTC
1 AGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACCGCAACTTC
*
91396475 AGGAAGATAAGACTTG
1 AGGGAGATAAGACTTG
91396491 TGACCTCAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (45 bp):
AGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACCGCAACTTC
Found at i:91396757 original size:45 final size:43
Alignment explanation
Indices: 91396582--91396783 Score: 181
Period size: 44 Copynumber: 4.6 Consensus size: 43
91396572 ATTTGTAATT
* *
91396582 TTCAACCTGTTACCCTACTGCTTAAGGGGGTTAAGGCTCATCGTC
1 TTCAATCTGTTACCCTACTGCTT-A-GGGGTTAAGGCCCATCGTC
* * ** * ** *
91396627 TTCGATCTGTT-CCCTTACTGCTTAGGGTGATAAGATCTATAATT
1 TTCAATCTGTTACCC-TACTGCTTAGGG-GTTAAGGCCCATCGTC
** *
91396671 TTCAGCCTGTTACCCTATTGCTTAGGAGGTTAAGGCCCATCGTC
1 TTCAATCTGTTACCCTACTGCTTAGG-GGTTAAGGCCCATCGTC
*
91396715 TTCAATCTGCTCTACCCTACTGCTTAGGGGTTAAGGCCCATCGCC
1 TTCAATCTG-T-TACCCTACTGCTTAGGGGTTAAGGCCCATCGTC
* * *
91396760 TTCGATCTGTTTCCTTACTGCTTA
1 TTCAATCTGTTACCCTACTGCTTA
91396784 AGGTGATAAG
Statistics
Matches: 123, Mismatches: 28, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
43 15 0.12
44 47 0.38
45 46 0.37
46 15 0.12
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (43 bp):
TTCAATCTGTTACCCTACTGCTTAGGGGTTAAGGCCCATCGTC
Found at i:91396850 original size:133 final size:135
Alignment explanation
Indices: 91396592--91396840 Score: 405
Period size: 133 Copynumber: 1.9 Consensus size: 135
91396582 TTCAACCTGT
* * *
91396592 TACCCTACTGCTTAAGGGGGTTAAGGCTCATCGTCTTCGATCTGTTCCCTTACTGCTTAGGGTGA
1 TACCCTACTGCTTAAGGGGGTTAAGGCCCATCGCCTTCGATCTGTTCCCTTACTGCTTAAGGTGA
* *
91396657 TAAGATCTATAATTTTCAGCCTGTTACCCTATTGCTTAGGAGGTTAAGGCCCATCGTCTTCAATC
66 TAAGATCTAAAATTTTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCCCATCGTCTTCAATC
91396722 TGCTC
131 TGCTC
*
91396727 TACCCTACTGCTT-A-GGGGTTAAGGCCCATCGCCTTCGATCTGTTTCCTTACTGCTTAAGGTGA
1 TACCCTACTGCTTAAGGGGGTTAAGGCCCATCGCCTTCGATCTGTTCCCTTACTGCTTAAGGTGA
*
91396790 TAAGATCTAAAATATTT-AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCC
66 TAAGATCTAAAAT-TTTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCC
91396841 ATTTGTCTTC
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
133 89 0.84
134 4 0.04
135 13 0.12
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (135 bp):
TACCCTACTGCTTAAGGGGGTTAAGGCCCATCGCCTTCGATCTGTTCCCTTACTGCTTAAGGTGA
TAAGATCTAAAATTTTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCCCATCGTCTTCAATC
TGCTC
Found at i:91396852 original size:88 final size:88
Alignment explanation
Indices: 91396727--91397455 Score: 1041
Period size: 88 Copynumber: 8.3 Consensus size: 88
91396717 CAATCTGCTC
* * * * * *
91396727 TACCCTACTGCTTA-GGGGTTAAGGCCCATCGCCTTCGATCTGTTTCC-TTACTGCTTAAGGTGA
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGGGAGA
* **
91396790 TAAGATCTAAAATATTT-AGCCTGT
65 CAAGATCTGTAAT-TTTCAGCCTGT
* * * * *
91396814 TACCCTACTGCTTAGGGGGTTAAGGCCATTTGTCTTCGATCTACTCCACTACTACTTAAGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
*
91396879 AAGATCTGTAATTTTCAGCCTAT
66 AAGATCTGTAATTTTCAGCCTGT
*
91396902 TACCCTACTACTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
*
91396967 GAGATCTGTAATTTTCAGCCTGT
66 AAGATCTGTAATTTTCAGCCTGT
* * * * * *
91396990 TACCTTACTGCTTAAGGGGTTAAGGCTCTTTGTCTTCGATCTGGTCTACTACTGCTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
*
91397055 AAGATCTGTAATTTTCAACCTGT
66 AAGATCTGTAATTTTCAGCCTGT
* * * *
91397078 TACCCTACTACTTAAGGGGTTAAGGCCCTTCGCCTTCGATCTGCTCCACTATTGCTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
91397143 AAGATCTGTAATTTTCAGCCTGT
66 AAGATCTGTAATTTTCAGCCTGT
*
91397166 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGGTCCACTACTGCTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
*
91397231 GAGATCTGTAATTTTCAGCCTGT
66 AAGATCTGTAATTTTCAGCCTGT
* *
91397254 TACCCTACTGCTTAGAGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCATTACTGCTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
* * *
91397319 GAGATTTGTAATTTTCAGCCTAT
66 AAGATCTGTAATTTTCAGCCTGT
* * * * *
91397342 TACCTTACTGCTTAGAGGGTTAAGGCCCTTCTTCTTCGATCTGCTTCACTACTACTTAGGGAGAC
1 TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
91397407 AAGATCTGTAATTTTCAGCCTGT
66 AAGATCTGTAATTTTCAGCCTGT
* *
91397430 TACCCTACTACTTAAGGGGTTAAGGC
1 TACCCTACTGCTTAGGGGGTTAAGGC
91397456 TTACGAATTC
Statistics
Matches: 577, Mismatches: 62, Indels: 5
0.90 0.10 0.01
Matches are distributed among these distances:
87 20 0.03
88 557 0.97
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (88 bp):
TACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAC
AAGATCTGTAATTTTCAGCCTGT
Found at i:91398282 original size:4 final size:4
Alignment explanation
Indices: 91398273--91398320 Score: 87
Period size: 4 Copynumber: 11.8 Consensus size: 4
91398263 ACCTCTTCTT
91398273 TTTA TTTA TTTA TTTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
91398321 TTAGGCGAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 39 0.91
5 4 0.09
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:91409040 original size:3 final size:3
Alignment explanation
Indices: 91409034--91409101 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
91409024 AGAAGAAGTG
91409034 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91409082 ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
91409102 GTAATAAATA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:91409308 original size:33 final size:35
Alignment explanation
Indices: 91409260--91409327 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 35
91409250 CAATGCTAAT
*
91409260 AATATATTAAATTAACTAACTTCAAACTAAAATAG
1 AATATATTAAATTAACTAACTTAAAACTAAAATAG
* *
91409295 AATATA-T-AATTAACTAATTTAAAATTAAAATAG
1 AATATATTAAATTAACTAACTTAAAACTAAAATAG
91409328 CAAAAGTAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 23 0.77
34 1 0.03
35 6 0.20
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (35 bp):
AATATATTAAATTAACTAACTTAAAACTAAAATAG
Found at i:91410549 original size:40 final size:40
Alignment explanation
Indices: 91410489--91410577 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
91410479 GTGTGTATAG
* * * * *
91410489 ATAGGATTTGTTCCTGATTCACTATGGTAATTTAAAGTGA
1 ATAGGATTTATTCCTAATTCACTACGGTAACTTAAAGCGA
* *
91410529 ATAGGATTTATTCCTAATTCACTACGGTAACTTAAGGCGG
1 ATAGGATTTATTCCTAATTCACTACGGTAACTTAAAGCGA
91410569 ATAGGATTT
1 ATAGGATTT
91410578 GACCTGAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.37
Consensus pattern (40 bp):
ATAGGATTTATTCCTAATTCACTACGGTAACTTAAAGCGA
Found at i:91410663 original size:78 final size:79
Alignment explanation
Indices: 91410556--91410770 Score: 308
Period size: 78 Copynumber: 2.7 Consensus size: 79
91410546 TTCACTACGG
* * *** *
91410556 TAACTTAAGGCGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACGGTTACGTGATAT
1 TAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACAGTTACACAATAC
*
91410621 ATGATTCATTATGT
66 ATGATTCATTATGA
*
91410635 TAACCTAAGGTGGAT-GGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACAGTTACACAATAC
1 TAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACAGTTACACAATAC
*
91410699 ATGATTCCTTATGA
66 ATGATTCATTATGA
* **
91410713 TAACTTAAGGTGGGTAGGATTTGACCTGAAAA-GGTAATCCTGATTCATTACAGTTACA
1 TAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACAGTTACA
91410771 TGAGATGTGA
Statistics
Matches: 122, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
78 93 0.76
79 29 0.24
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (79 bp):
TAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTACAGTTACACAATAC
ATGATTCATTATGA
Found at i:91412837 original size:16 final size:17
Alignment explanation
Indices: 91412799--91412837 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
91412789 ATAAAATAAG
91412799 ATTCAAAAAATTGATTA
1 ATTCAAAAAATTGATTA
* *
91412816 ACTCAAAAAATT-TTTA
1 ATTCAAAAAATTGATTA
91412832 ATTCAA
1 ATTCAA
91412838 TTTGATTGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (17 bp):
ATTCAAAAAATTGATTA
Found at i:91415775 original size:15 final size:15
Alignment explanation
Indices: 91415728--91415780 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
91415718 CTTATATAGT
91415728 TTAATTAAAT-TTAA
1 TTAATTAAATCTTAA
* * *
91415742 TTAATCATA-CTTTAT
1 TTAATTAAATC-TTAA
91415757 TTAATTAAATCTTAA
1 TTAATTAAATCTTAA
91415772 TTAATTAAA
1 TTAATTAAA
91415781 AGTTAATTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 7 0.23
15 22 0.73
16 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAATTAAATCTTAA
Found at i:91422759 original size:56 final size:56
Alignment explanation
Indices: 91422690--91422802 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
91422680 TTATGAAAGT
91422690 AAGCCATTTCCCCCACCCACCCCATGTAAAGACTGCAAACAATAGTTGTTGATGAG
1 AAGCCATTTCCCCCACCCACCCCATGTAAAGACTGCAAACAATAGTTGTTGATGAG
91422746 AAGCCATTTCCCCCACCCACCCCATGTAAAGACTGCAAACAATAGTTGTTGATGAG
1 AAGCCATTTCCCCCACCCACCCCATGTAAAGACTGCAAACAATAGTTGTTGATGAG
91422802 A
1 A
91422803 TGCACATGCC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (56 bp):
AAGCCATTTCCCCCACCCACCCCATGTAAAGACTGCAAACAATAGTTGTTGATGAG
Found at i:91436322 original size:11 final size:11
Alignment explanation
Indices: 91436308--91436354 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
91436298 GTTTTAGTGC
91436308 TATTTTGCTGT
1 TATTTTGCTGT
*
91436319 TATTTTGCTAT
1 TATTTTGCTGT
* *
91436330 TATATTGCTGC
1 TATTTTGCTGT
*
91436341 TA-TTTGTTGT
1 TATTTTGCTGT
91436351 TATT
1 TATT
91436355 GTTTAGATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.15, C:0.09, G:0.15, T:0.62
Consensus pattern (11 bp):
TATTTTGCTGT
Found at i:91437259 original size:29 final size:29
Alignment explanation
Indices: 91437226--91437287 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
91437216 AAGATAGTTA
91437226 ATTATAATATTTTTTAAACAATCCTTACT
1 ATTATAATATTTTTTAAACAATCCTTACT
91437255 ATTATAATATTTTTTAAACAATCCTTACT
1 ATTATAATATTTTTTAAACAATCCTTACT
91437284 -TTAT
1 ATTAT
91437288 TTGTTCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (29 bp):
ATTATAATATTTTTTAAACAATCCTTACT
Found at i:91438972 original size:40 final size:40
Alignment explanation
Indices: 91438917--91438996 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
91438907 CTTCACTTAC
91438917 TCCACACTACATCTGTCGATATTTGTACCTGCACTACACA
1 TCCACACTACATCTGTCGATATTTGTACCTGCACTACACA
91438957 TCCACACTACATCTGTCGATATTTGTACCTGCACTACACA
1 TCCACACTACATCTGTCGATATTTGTACCTGCACTACACA
91438997 CCCAATTGCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.30
Consensus pattern (40 bp):
TCCACACTACATCTGTCGATATTTGTACCTGCACTACACA
Found at i:91444118 original size:58 final size:56
Alignment explanation
Indices: 91444055--91444218 Score: 165
Period size: 58 Copynumber: 2.9 Consensus size: 56
91444045 TTTTTATAGT
* * *
91444055 ATTATATATTATGATTT-TTTAATTCATA-TAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTAT--TTTATTAAATT-ATATTAATAATAATTATATTAA-AATATGATTAA
* *
91444113 ATTATATATTATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGGTTAA
1 ATTATATATTATTTTATTAAATTATA-TTAATAATAATTATATTAAAATATGATTAA
* *
91444170 ATTATTTATTATTTTTATTAAATTATTTTTAATAAT-ATCT-TATTAAAAT
1 ATTATATATTA-TTTTATTAAATTA-TATTAATAATAAT-TATATTAAAAT
91444219 TTAATAACAA
Statistics
Matches: 92, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
56 6 0.07
57 34 0.37
58 51 0.55
59 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (56 bp):
ATTATATATTATTTTATTAAATTATATTAATAATAATTATATTAAAATATGATTAA
Found at i:91444216 original size:57 final size:57
Alignment explanation
Indices: 91444083--91444218 Score: 177
Period size: 58 Copynumber: 2.4 Consensus size: 57
91444073 TTAATTCATA
* **
91444083 TAATAATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGGTTAAATTATATATTATTTTATTAAATTATATT
* * *
91444141 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATATTAAAATATGGTTAAATTATATATTA-TTTTATTAAATTATATT
91444199 TAATAAT-ATCT-TATTAAAAT
1 TAATAATAAT-TATATTAAAAT
91444219 TTAATAACAA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
57 28 0.41
58 41 0.59
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (57 bp):
TAATAATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATT
Found at i:91444403 original size:46 final size:44
Alignment explanation
Indices: 91444311--91444404 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
91444301 ATTACAACAT
*
91444311 CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATAAGAATACTATTACAGCTCTATTC
* *
91444355 CATTCCATTTAACCAAACAGT-TGAATTACTTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACA-TAAGAA-TAC-TATTACAGCTCTATTC
91444401 CATT
1 CATT
91444405 ACAGCCCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 21 0.48
45 4 0.09
46 19 0.43
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (44 bp):
CATTCCATTCAACCAAACATAAGAATACTATTACAGCTCTATTC
Found at i:91444407 original size:16 final size:16
Alignment explanation
Indices: 91444386--91444424 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
91444376 TGAATTACTT
*
91444386 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCC
*
91444402 ATTACAGCCCTATTCT
1 ATTACAGCCCTATTCC
91444418 ATTACAG
1 ATTACAG
91444425 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:91455218 original size:47 final size:47
Alignment explanation
Indices: 91455109--91455219 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
91455099 CCGGGATAAG
* *
91455109 CACATAGTGCTTCATTGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
91455156 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
91455203 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
91455220 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:91461823 original size:12 final size:12
Alignment explanation
Indices: 91461803--91461838 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
91461793 ATTCATTTAA
91461803 CATTCATGCATT
1 CATTCATGCATT
*
91461815 CATTTATGCATT
1 CATTCATGCATT
*
91461827 CATTCATTCATT
1 CATTCATGCATT
91461839 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:91468822 original size:70 final size:69
Alignment explanation
Indices: 91468704--91469124 Score: 401
Period size: 70 Copynumber: 6.2 Consensus size: 69
91468694 GAGTTAAGCC
*
91468704 TTTT-AATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
91468768 GAGGTA
64 GAGGTA
* * ** * *
91468774 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
91468839 AGGTA
65 AGGTA
* *
91468844 TTTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
91468908 GAGGTA
64 GAGGTA
* * * ** * * *
91468914 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
91468970 ---A
66 GGTA
*** ** *
91468971 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
91469032 GGTA
66 GGTA
* * *
91469036 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
91469101 TGAGGTA
63 TGAGGTA
*
91469108 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
91469125 CAATTTACGT
Statistics
Matches: 283, Mismatches: 44, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
68 3 0.01
69 37 0.13
70 112 0.40
71 22 0.08
72 56 0.20
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:91469047 original size:262 final size:255
Alignment explanation
Indices: 91468537--91469127 Score: 1029
Period size: 262 Copynumber: 2.3 Consensus size: 255
91468527 TTTCAAGGAA
91468537 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TTGT
91468602 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
65 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
91468667 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAACTC
130 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAACTC
91468732 ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
195 ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
91468793 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
*
91468858 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTT
66 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--TT
91468923 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT
126 TA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG-TTTTCAAAAT
91468988 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTT
189 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTT
91469053 TT
254 TT
* * * * *
91469055 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
91469120 GTTTTCAA
63 GTTTTCAA
91469128 TTTACGTTGT
Statistics
Matches: 319, Mismatches: 6, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
255 60 0.19
256 60 0.19
258 2 0.01
260 4 0.01
261 51 0.16
262 79 0.25
264 54 0.17
265 9 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (255 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGTT
TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTCAAAATCAACTCA
TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:91469086 original size:72 final size:71
Alignment explanation
Indices: 91468965--91469130 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
91468955 GAGTTAAGCC
** * *
91468965 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
91469029 TGAGGTA
65 TGAGGTA
*
91469036 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
91469101 TGAGGTA
65 TGAGGTA
* *
91469108 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
91469131 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:91469461 original size:74 final size:76
Alignment explanation
Indices: 91469355--91469499 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
91469345 TTTTTGCCTT
*
91469355 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
91469417 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
91469429 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
91469494 AATTTC
66 AATTTC
91469500 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:91469467 original size:165 final size:166
Alignment explanation
Indices: 91469195--91469672 Score: 714
Period size: 165 Copynumber: 2.9 Consensus size: 166
91469185 CTACTTTTTC
91469195 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
91469260 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
* *
91469325 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
91469360 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
91469425 GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
91469490 TTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTC-----AAAA
*
91469531 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * ** * *
91469596 GTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
91469657 TTTCAATTTCTGTTTT
131 TTTCAATTTCCGTTTT
91469673 CAAAAAATCA
Statistics
Matches: 287, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
165 154 0.54
167 27 0.09
169 34 0.12
171 72 0.25
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (166 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
Found at i:91469613 original size:72 final size:73
Alignment explanation
Indices: 91469529--91470035 Score: 406
Period size: 72 Copynumber: 6.5 Consensus size: 73
91469519 TTCAAAAAAA
*
91469529 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
91469594 CTGTTTTC
66 CTGTTTTC
* * ** ** *
91469602 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
91469666 CTGTTTTC
66 CTGTTTTC
* * * ** *
91469674 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
91469739 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
91469750 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
91469815 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
91469829 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
91469893 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
91469906 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
91469971 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
91469998 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
91470036 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 57
0.76 0.12 0.12
Matches are distributed among these distances:
72 64 0.18
73 33 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
81 5 0.01
82 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:91469852 original size:79 final size:76
Alignment explanation
Indices: 91469528--91470245 Score: 427
Period size: 88 Copynumber: 9.0 Consensus size: 76
91469518 TTTCAAAAAA
** *
91469528 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
91469591 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
91469602 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
91469663 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
91469674 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
91469738 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
91469750 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
91469815 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
91469829 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
91469893 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
91469906 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
91469971 GCTATTTTCAATTTCTGTTTTTTTTTC
55 GGTATTTTCAATTTCTG-----TTTTC
* * * * * *
91469998 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
91470062 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
91470085 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
91470146 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
91470160 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
91470225 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
91470246 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 101
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
75 36 0.07
76 5 0.01
77 63 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 7 0.01
82 30 0.06
83 1 0.00
84 31 0.06
85 7 0.01
86 1 0.00
87 11 0.02
88 120 0.24
89 3 0.01
90 1 0.00
91 13 0.03
92 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:91469906 original size:14 final size:13
Alignment explanation
Indices: 91469887--91469922 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
91469877 TGTCGAGGTA
91469887 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
91469900 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
91469914 TTTTCAAAA
1 TTTTCAAAA
91469923 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:91470053 original size:30 final size:30
Alignment explanation
Indices: 91470017--91470078 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
91470007 CAACTCATAT
91470017 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
91470047 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
91470077 TG
1 TG
91470079 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:91470179 original size:254 final size:248
Alignment explanation
Indices: 91469668--91470246 Score: 762
Period size: 254 Copynumber: 2.3 Consensus size: 248
91469658 TTCAATTTCT
* * *
91469668 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
91469733 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* *
91469794 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
91469859 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
91469913 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
91469977 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
91470042 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
*
91470104 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
91470167 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
91470231 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
91470247 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 28, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 146 0.50
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:91470894 original size:16 final size:15
Alignment explanation
Indices: 91470874--91470956 Score: 59
Period size: 16 Copynumber: 5.7 Consensus size: 15
91470864 ATTAAGCCCC
91470874 CCAAAAAAAACCTAA
1 CCAAAAAAAACCTAA
*
91470889 CCCAAAAAAAAAC-AA
1 -CCAAAAAAAACCTAA
** **
91470904 AGAAAAAAAA-AGAA
1 CCAAAAAAAACCTAA
91470918 --AAAGAAAAACCT-A
1 CCAAA-AAAAACCTAA
91470931 CCAAAAAAAACCTAA
1 CCAAAAAAAACCTAA
91470946 CCCAAAAAAAA
1 -CCAAAAAAAA
91470957 AAGAAGAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
12 3 0.06
13 6 0.11
14 18 0.33
15 6 0.11
16 21 0.39
ACGTcount: A:0.72, C:0.20, G:0.04, T:0.04
Consensus pattern (15 bp):
CCAAAAAAAACCTAA
Found at i:91471553 original size:2 final size:2
Alignment explanation
Indices: 91471548--91471588 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
91471538 TAAATACTAT
*
91471548 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91471589 TTTAAATACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:91488875 original size:16 final size:16
Alignment explanation
Indices: 91488844--91488880 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
91488834 ATGTGAATAA
91488844 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
91488860 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
91488876 TATTA
1 TATTA
91488881 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:91488932 original size:22 final size:22
Alignment explanation
Indices: 91488892--91488947 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
91488882 AATAAAATTG
*
91488892 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
91488912 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
91488934 TATTAATAATTTAT
1 AAATAATAAATTAT
91488948 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:91489826 original size:18 final size:19
Alignment explanation
Indices: 91489781--91489826 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
91489771 GGAGAAGGAC
91489781 CCATTGATGGCGGTGGTGAA
1 CCATTGATGGCGGTGGTG-A
91489801 CTCATTGATGG-GGTTGGTG-
1 C-CATTGATGGCGG-TGGTGA
91489820 CCATTGA
1 CCATTGA
91489827 AGAAGGGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 6 0.25
19 1 0.04
20 3 0.12
21 14 0.58
ACGTcount: A:0.17, C:0.15, G:0.37, T:0.30
Consensus pattern (19 bp):
CCATTGATGGCGGTGGTGA
Found at i:91493320 original size:3 final size:3
Alignment explanation
Indices: 91493307--91493340 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
91493297 TTCCAAGAAT
*
91493307 ACA ATA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
91493341 AAAATTCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.29, G:0.00, T:0.03
Consensus pattern (3 bp):
ACA
Found at i:91493702 original size:22 final size:22
Alignment explanation
Indices: 91493656--91493702 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
91493646 TATACATCTC
*
91493656 TATTTCATTCTCATCGAATATA
1 TATTTCATTCTCATCGAATAAA
91493678 TATTTCATT-TCAGT-GAATCAAA
1 TATTTCATTCTCA-TCGAAT-AAA
91493700 TAT
1 TAT
91493703 GTTTCTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (22 bp):
TATTTCATTCTCATCGAATAAA
Found at i:91494903 original size:30 final size:30
Alignment explanation
Indices: 91494867--91494952 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 30
91494857 TAATAGTTAG
91494867 AATTAAATTTTAAAATATAAAAAGTAAGTA
1 AATTAAATTTTAAAATATAAAAAGTAAGTA
*
91494897 AATTAAATTTTTAAAA-AT-AAAAGT-ATTA
1 AATTAAA-TTTTAAAATATAAAAAGTAAGTA
*
91494925 AGACTAAATTTTAAAATTATAAAAAGTA
1 A-ATTAAATTTTAAAA-TATAAAAAGTA
91494953 GAACCACGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
28 12 0.25
29 11 0.23
30 11 0.23
31 14 0.29
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (30 bp):
AATTAAATTTTAAAATATAAAAAGTAAGTA
Found at i:91496221 original size:69 final size:69
Alignment explanation
Indices: 91496115--91496276 Score: 234
Period size: 69 Copynumber: 2.3 Consensus size: 69
91496105 TTGAATAATT
* *
91496115 TACTAAAGAGAGGACCTTTTCACCCAATTTTTATTAGATGGTTGAGTCATTTGATGACAGAGCTT
1 TACTAAAGAGAGGACC-TTTCACCCAATTGTTATTAGATGGTTGAGTCATTTGATGAAAGAGCTT
*
91496180 GACTC
65 AACTC
* *
91496185 TATTAAAGAGAGGACCTTTCACCCAATTGTTGTTAGATGGTTGAGTCATTTGATGAAAGAGCTTA
1 TACTAAAGAGAGGACCTTTCACCCAATTGTTATTAGATGGTTGAGTCATTTGATGAAAGAGCTTA
*
91496250 ACTT
66 ACTC
* * *
91496254 TACTATAGATAGGATCTTTCACC
1 TACTAAAGAGAGGACCTTTCACC
91496277 TGATGTACCC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
69 67 0.82
70 15 0.18
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (69 bp):
TACTAAAGAGAGGACCTTTCACCCAATTGTTATTAGATGGTTGAGTCATTTGATGAAAGAGCTTA
ACTC
Found at i:91496820 original size:342 final size:333
Alignment explanation
Indices: 91496188--91496823 Score: 796
Period size: 342 Copynumber: 1.9 Consensus size: 333
91496178 TTGACTCTAT
* *
91496188 TAAAGAGAGGACCTTTCACCCAATTGTTGTTAGATGGTTGAGTCATTTGATGAAAGAGCTTAACT
1 TAAAGAGAGGACCTTTCACCCAATTGCTGTTAGATGGTTGAGCCATTTGATGAAAGAGCTTAACT
* * * * * *
91496253 TTACTATAGATAGGATCTTTCACCTGATGTACCCCTTGGCTTGTGAACTCGGGCTTTTGGTAGAG
66 TTACTAAAGAGAGGACCTTTCACCTGATGTACCCCTTGGCCTATGAACTCGGGCTGTTGGTAGAG
*
91496318 TCGAGGTTAGCTCAAGTTGTAACATGCTCATGTGAACTCTTCAATTTGCACATGTTTCTGTCTGC
131 TCGAGGTTAGCTCAAGTTGTAACATGCTCATGTGAACTCTTCAATTTGCACATGTTTCTATCTGC
**
91496383 TCAGGCACTCCGAGTCATTCTCACTCTATGAACCTGCTAAGGCTTTCGGTAGAGTAGAGAGACAA
196 TCAGGCACTCCGAGTCATTCTCACTCTATGAACCTGCTAAGGCTTTCGCCAGAGTAGAGAGACAA
***
91496448 AACCCCGGCAAGGGATAATACCAAACTTGTTGAGGGTCTAACCCATGGGAATCGAGGAAGTTGAA
261 AACCCAAACAAGGGATAATACCAAACTTGTTGAGGGTCTAACCCATGGGAATCGAGGAAGTTGAA
91496513 TAATTTAC
326 TAATTTAC
*
91496521 TAAAGAGAGGACCTTTTCACCCAATTGCTGTTAGATGGTTGAGCCATTTGATGAAAGAGCTTAAT
1 TAAAGAGAGGACC-TTTCACCCAATTGCTGTTAGATGGTTGAGCCATTTGATGAAAGAGCTTAAC
* * *
91496586 TTTACTAAAGAGAGGACCTTTTATCCAATTGGTTGATGTA-CCTTTCGGCCTATGAACTCGGTCT
65 TTTACTAAAGAGAGGACCTTTCA-CC-------TGATGTACCCCTT-GGCCTATGAACTCGGGCT
* * * * ***
91496650 GTTGGTGGAGTCGAGGTTAGCTCAATTTGTATCATGCTCCTAG-GAACTCTTCAATTTGTGTATG
121 GTTGGTAGAGTCGAGGTTAGCTCAAGTTGTAACATGCTCAT-GTGAACTCTTCAATTTGCACATG
* * * * * * *
91496714 TTTTTATCTGTTCAGGCACTCCGAGT-GTCTGTCACTTTGTGAACCT-CTTAATG-TTCTCGCCA
185 TTTCTATCTGCTCAGGCACTCCGAGTCAT-TCTCACTCTATGAACCTGC-TAAGGCTT-TCGCCA
* **
91496776 GAGTAGAGAGACAAAACCCAAACAAGGGATAATATCGGACTTGTTGAG
247 GAGTAGAGAGACAAAACCCAAACAAGGGATAATACCAAACTTGTTGAG
91496824 CCTTGACAAA
Statistics
Matches: 254, Mismatches: 35, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
333 13 0.05
334 67 0.26
335 2 0.01
341 8 0.03
342 163 0.64
343 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (333 bp):
TAAAGAGAGGACCTTTCACCCAATTGCTGTTAGATGGTTGAGCCATTTGATGAAAGAGCTTAACT
TTACTAAAGAGAGGACCTTTCACCTGATGTACCCCTTGGCCTATGAACTCGGGCTGTTGGTAGAG
TCGAGGTTAGCTCAAGTTGTAACATGCTCATGTGAACTCTTCAATTTGCACATGTTTCTATCTGC
TCAGGCACTCCGAGTCATTCTCACTCTATGAACCTGCTAAGGCTTTCGCCAGAGTAGAGAGACAA
AACCCAAACAAGGGATAATACCAAACTTGTTGAGGGTCTAACCCATGGGAATCGAGGAAGTTGAA
TAATTTAC
Found at i:91500154 original size:13 final size:14
Alignment explanation
Indices: 91500136--91500164 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
91500126 GTTGAATTTT
91500136 TTTTTGTTT-TGGG
1 TTTTTGTTTGTGGG
91500149 TTTTTGTTTGTGGG
1 TTTTTGTTTGTGGG
91500163 TT
1 TT
91500165 GTTTTGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (14 bp):
TTTTTGTTTGTGGG
Found at i:91500509 original size:4 final size:4
Alignment explanation
Indices: 91500500--91500531 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
91500490 AGCAATGGAA
*
91500500 ATGT ATGT ATGC ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
91500532 GAAAGTTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:91500641 original size:151 final size:150
Alignment explanation
Indices: 91500381--91500735 Score: 471
Period size: 151 Copynumber: 2.3 Consensus size: 150
91500371 GGGAAAGTTC
* * * * * *
91500381 AAAGTTCCATGATTCAGTTCTATTGTTATATGATGAACTAGGGGAAGGGAAAAAAATATAGGTGT
1 AAAGTT-CATGATTCAATGCTATGGTTATGTGATGAACTAGGGGAAGGAAAAAAAATATAGGTGC
* *
91500446 AAAGGATTGGTTGTGGTGTTGAATTTCAGGTTCTGATTGGAGGAAGCAATGGAAATGTATGTATG
65 AAAAGATTGGTTGTGGTGTTGAATTTCAGGTTCTGATTGGAGGAAACAATGGAAATGTATGTATG
91500511 CATGTATGTATGTATGTATGT
130 CATGTATGTATGTATGTATGT
* *
91500532 GAAAGTTCATGATTCAATGCTATGGTTATGTGATGAATTAGGGGAAGGAAAAAAAATATGGGTGC
1 -AAAGTTCATGATTCAATGCTATGGTTATGTGATGAACTAGGGGAAGGAAAAAAAATATAGGTGC
* *
91500597 AAAAGATTGGTT-T-GTGTTGAATTTCAGGTTTTGATTGGGAAGGAAACAATGGAGATGTATGTA
65 AAAAGATTGGTTGTGGTGTTGAATTTCAGGTTCTGATT-GG-AGGAAACAATGGAAATGTATGTA
*
91500660 TGTATGTATGTATGTATGTATGT
128 TGCATGTATGTATGTATGTATGT
** * * ** *
91500683 ATGGTTCATTGATTAAATGCTATGATTATGTGATGAACTCCGGGAGGGAAAAA
1 AAAGTTCA-TGATTCAATGCTATGGTTATGTGATGAACTAGGGGAAGGAAAAA
91500736 GGTAAAAGTA
Statistics
Matches: 179, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
149 22 0.12
150 9 0.05
151 142 0.79
152 6 0.03
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (150 bp):
AAAGTTCATGATTCAATGCTATGGTTATGTGATGAACTAGGGGAAGGAAAAAAAATATAGGTGCA
AAAGATTGGTTGTGGTGTTGAATTTCAGGTTCTGATTGGAGGAAACAATGGAAATGTATGTATGC
ATGTATGTATGTATGTATGT
Found at i:91500658 original size:4 final size:4
Alignment explanation
Indices: 91500651--91500685 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
91500641 AACAATGGAG
91500651 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
91500686 GTTCATTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:91503073 original size:28 final size:26
Alignment explanation
Indices: 91503041--91503103 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 26
91503031 AAATTTTATC
91503041 ATTTTAAGTACAAGGACTAAATATCAAA
1 ATTTTAAGTACAAGGACT-AATA-CAAA
*
91503069 ATTTTCAAAGTACAAGGACTAATAGAAA
1 ATTTT--AAGTACAAGGACTAATACAAA
91503097 ATTTTAA
1 ATTTTAA
91503104 CCTTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 2 0.06
28 13 0.41
29 4 0.12
30 13 0.41
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (26 bp):
ATTTTAAGTACAAGGACTAATACAAA
Found at i:91515589 original size:24 final size:24
Alignment explanation
Indices: 91515551--91515627 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
91515541 GATATTTTGA
91515551 TATTTTA-TAATTATTTAATTAGAT
1 TATTTTATTAA-TATTTAATTAGAT
*
91515575 TATTTTATTAATATTTTAATAAGA-
1 TATTTTATTAATA-TTTAATTAGAT
91515599 TATTTTATT-AT-TTT-ATT--AT
1 TATTTTATTAATATTTAATTAGAT
91515618 TATTTTATTA
1 TATTTTATTA
91515628 GTATATAAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.02
19 9 0.19
20 2 0.04
21 3 0.06
23 2 0.04
24 18 0.38
25 12 0.26
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (24 bp):
TATTTTATTAATATTTAATTAGAT
Found at i:91515591 original size:11 final size:11
Alignment explanation
Indices: 91515550--91515627 Score: 61
Period size: 11 Copynumber: 7.0 Consensus size: 11
91515540 AGATATTTTG
91515550 ATATTTTA-TA
1 ATATTTTATTA
*
91515560 ATTATTTAATTA
1 A-TATTTTATTA
91515572 GATTATTTTATTA
1 -A-TATTTTATTA
*
91515585 ATATTTTAATA
1 ATATTTTATTA
* *
91515596 AGATATT-TTA
1 ATATTTTATTA
*
91515606 TTATTTTATTA
1 ATATTTTATTA
*
91515617 TTATTTTATTA
1 ATATTTTATTA
91515628 GTATATAAAG
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
10 7 0.13
11 34 0.62
12 3 0.05
13 11 0.20
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (11 bp):
ATATTTTATTA
Found at i:91515601 original size:13 final size:13
Alignment explanation
Indices: 91515564--91515605 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
91515554 TTTATAATTA
91515564 TTTAATTAGATTAT
1 TTTAATTAGA-TAT
91515578 TTT-ATTA-ATAT
1 TTTAATTAGATAT
*
91515589 TTTAATAAGATAT
1 TTTAATTAGATAT
91515602 TTTA
1 TTTA
91515606 TTATTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 6 0.24
12 4 0.16
13 12 0.48
14 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (13 bp):
TTTAATTAGATAT
Found at i:91517500 original size:42 final size:43
Alignment explanation
Indices: 91517452--91517536 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
91517442 GTTGTTAAAG
* * * *
91517452 AATGCTTTTATTTTAGTTAC-CAAGTATTAAATCCCTAATGAC
1 AATGCTTTCATTTTAGTCACTCAAGCATTAAATCCATAATGAC
91517494 AATGCTTTCATTTTAGTCACTCAAGCATTAAATCCATAATGAC
1 AATGCTTTCATTTTAGTCACTCAAGCATTAAATCCATAATGAC
91517537 TTTTTTATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
42 18 0.47
43 20 0.53
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (43 bp):
AATGCTTTCATTTTAGTCACTCAAGCATTAAATCCATAATGAC
Found at i:91518281 original size:22 final size:22
Alignment explanation
Indices: 91518256--91518297 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
91518246 ACATCTTACA
91518256 TTAAAAA-AATAAAATAAAAAAG
1 TTAAAAATAA-AAAATAAAAAAG
*
91518278 TTAAAAATAAAACATAAAAA
1 TTAAAAATAAAAAATAAAAA
91518298 CAAGATGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (22 bp):
TTAAAAATAAAAAATAAAAAAG
Found at i:91527596 original size:4 final size:4
Alignment explanation
Indices: 91527583--91527613 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
91527573 TTGATTTTGG
91527583 GTTT -TTT GTTT GTTT GTTT GTTT GTTT GTTT
1 GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT
91527614 AGATTAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
GTTT
Found at i:91531852 original size:41 final size:42
Alignment explanation
Indices: 91531807--91531886 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 42
91531797 ATGCAGGGGA
* *
91531807 CACACGGTGT-ATCAACATGCCCGTGTG-CAAGCCGTGTGTCT
1 CACACGGTCTGATC-ACACGCCCGTGTGACAAGCCGTGTGTCT
91531848 CACACGGTCTGATCACACGCCCGTGTGACAAGCCGTGTG
1 CACACGGTCTGATCACACGCCCGTGTGACAAGCCGTGTG
91531887 GACTCAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 21 0.60
42 14 0.40
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (42 bp):
CACACGGTCTGATCACACGCCCGTGTGACAAGCCGTGTGTCT
Found at i:91533192 original size:30 final size:30
Alignment explanation
Indices: 91533145--91533204 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91533135 TTCCCGAGCC
91533145 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
91533175 TAGGGGTAAAACG-GTAATTTTGCCAAAGTT
1 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
91533205 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:91533677 original size:47 final size:46
Alignment explanation
Indices: 91533626--91533802 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
91533616 TGGTTGAACA
*
91533626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AAACG
* * *
91533673 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
*
91533720 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*
91533766 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91533803 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 9, Indels: 17
0.81 0.06 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.04
45 5 0.04
46 34 0.30
47 58 0.51
48 3 0.03
50 6 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:91535459 original size:6 final size:6
Alignment explanation
Indices: 91535448--91535473 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
91535438 ACGAATTCGG
91535448 AACAGT AACAGT AACAGT AACAGT AA
1 AACAGT AACAGT AACAGT AACAGT AA
91535474 GGCGACACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AACAGT
Found at i:91536466 original size:20 final size:18
Alignment explanation
Indices: 91536428--91536466 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
91536418 ACTTTATATT
*
91536428 ATTATATTATATTTTTTA
1 ATTATATTATATTTCTTA
91536446 ATTATAATTATTATTTCTTA
1 ATTAT-ATTA-TATTTCTTA
91536466 A
1 A
91536467 ATAATAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTATATTATATTTCTTA
Found at i:91538221 original size:5 final size:5
Alignment explanation
Indices: 91538211--91538247 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
91538201 AAATAGCTGA
91538211 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AA
91538248 ACAACCAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:91539284 original size:26 final size:28
Alignment explanation
Indices: 91539249--91539300 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
91539239 GTTAATAAAA
*
91539249 TTCTCTTTGAGTTTTTTTTTA-AAGAAT
1 TTCTCTTTGAGTTTTCTTTTAGAAGAAT
91539276 TTCTC-TTGAGTTTTCTTTTAGAAGA
1 TTCTCTTTGAGTTTTCTTTTAGAAGA
91539301 GTTTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (28 bp):
TTCTCTTTGAGTTTTCTTTTAGAAGAAT
Found at i:91541694 original size:29 final size:29
Alignment explanation
Indices: 91541639--91541695 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
91541629 AGATTAAGTA
* ** **
91541639 AAAATTTTAAAAATTTTAGGGGTTTAATT
1 AAAATTTTAAAAAATTTAAAGACTTAATT
91541668 AAAATTTTAAAAAATTTAAAGACTTAAT
1 AAAATTTTAAAAAATTTAAAGACTTAAT
91541696 AAGAAATTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (29 bp):
AAAATTTTAAAAAATTTAAAGACTTAATT
Found at i:91551374 original size:27 final size:27
Alignment explanation
Indices: 91551335--91551389 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
91551325 AGGTATTAGG
* *
91551335 ACTTAATTCATTGGTTGTACTCTGAGA
1 ACTTAAATAATTGGTTGTACTCTGAGA
91551362 ACTTAAATAATTGGTTGTACTCTGAGA
1 ACTTAAATAATTGGTTGTACTCTGAGA
91551389 A
1 A
91551390 AGATATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
ACTTAAATAATTGGTTGTACTCTGAGA
Found at i:91551716 original size:156 final size:157
Alignment explanation
Indices: 91551424--91551725 Score: 389
Period size: 156 Copynumber: 1.9 Consensus size: 157
91551414 AGGCGTTGCA
* * * *
91551424 GACATAGACTGAGGTTGAACTGTATAAATAATCTTGGTGTTCATTTTAACTTTTGTGCACCTTTT
1 GACATAGACTGAGGTTGAACTGCATAAATAATCTTGGGGTTCATTTTAACTATTGTGCA-C-TGT
* * *
91551489 TTTTTTTTAATTTCATTGTTAAAACTATGATGATAGTTCCAAACACTATTTTACCAACCGTTTCT
64 TTTTTTTTAATTTCATGGTTAAAACTATGATGATAGTTCCAAACACTATTTTACCAA-CATTTCA
91551554 GTTTGCAAAGCAAGTAGCCCTCGTTCCGCT
128 GTTTGCAAAGCAAGTAGCCCTCGTTCCGCT
* * *
91551584 GACATAGACTGAGGTTGAACTGCAT-ATTCAATCTTGGGGTTCATTTTTACTATTGTTCA-TGTT
1 GACATAGACTGAGGTTGAACTGCATAAAT-AATCTTGGGGTTCATTTTAACTATTGTGCACTGTT
* * *
91551647 TTTTTTT-ATTTCGTGGTTAAAATTATGATG-TCAGTTTCAAACACTATTTTAGCCATA-ATTTC
65 TTTTTTTAATTTCATGGTTAAAACTATGATGAT-AGTTCCAAACACTATTTTA-CCA-ACATTTC
91551709 AGTTTGCAAAGCAAGTA
127 AGTTTGCAAAGCAAGTA
91551726 CTCCTCATTC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
155 1 0.01
156 58 0.46
157 13 0.10
158 1 0.01
159 2 0.02
160 50 0.40
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (157 bp):
GACATAGACTGAGGTTGAACTGCATAAATAATCTTGGGGTTCATTTTAACTATTGTGCACTGTTT
TTTTTTAATTTCATGGTTAAAACTATGATGATAGTTCCAAACACTATTTTACCAACATTTCAGTT
TGCAAAGCAAGTAGCCCTCGTTCCGCT
Found at i:91552144 original size:30 final size:30
Alignment explanation
Indices: 91552108--91552167 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
91552098 CAGTCATACA
**
91552108 TTAGCTATTTTTGTCCCTTCATATAAAACT
1 TTAGCTATTTTTGTCCCCACATATAAAACT
91552138 TTAGCTATTTTTGTCCCCACATATAAAACT
1 TTAGCTATTTTTGTCCCCACATATAAAACT
91552168 AACACCGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (30 bp):
TTAGCTATTTTTGTCCCCACATATAAAACT
Found at i:91553999 original size:18 final size:18
Alignment explanation
Indices: 91553978--91554082 Score: 147
Period size: 18 Copynumber: 5.8 Consensus size: 18
91553968 CGTTTATGGT
*
91553978 ACTATTCACGTATATGGC
1 ACTATTCACGTATACGGC
91553996 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
* * *
91554014 ACTATTTACGTATACAGA
1 ACTATTCACGTATACGGC
*
91554032 ACTATTCACGTATACAGC
1 ACTATTCACGTATACGGC
*
91554050 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
91554068 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
91554083 AGTAGTTGGG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 78 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:91554060 original size:54 final size:54
Alignment explanation
Indices: 91553978--91554084 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
91553968 CGTTTATGGT
** *
91553978 ACTATTCACGTATATGGCACTATTCACGTATACGGCACTATTTACGTATACAGA
1 ACTATTCACGTATACAGCACTATTCACGTATACGGCACTATTCACGTATACAGA
* *
91554032 ACTATTCACGTATACAGCACTATTCACGTATACGGTACTGTTCACGTATACAG
1 ACTATTCACGTATACAGCACTATTCACGTATACGGCACTATTCACGTATACAG
91554085 TAGTTGGGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (54 bp):
ACTATTCACGTATACAGCACTATTCACGTATACGGCACTATTCACGTATACAGA
Found at i:91561331 original size:43 final size:43
Alignment explanation
Indices: 91561270--91561453 Score: 287
Period size: 43 Copynumber: 4.3 Consensus size: 43
91561260 CGCTATATGC
* *
91561270 AACGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCGCA
1 AACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCTCA
* *
91561313 AACGCTGCTAAAGACCATGACCTTTAGCGGCACTTTTTTCTCA
1 AACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCTCA
*
91561356 AACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTCTCA
1 AACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCTCA
* * * *
91561399 AACGCCGCTAAAGATCATAACCTTTAACGGCACTTTTCTCACA
1 AACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCTCA
91561442 AACGCCGCTAAA
1 AACGCCGCTAAA
91561454 AATAATGATT
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 131 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (43 bp):
AACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCTCA
Found at i:91564559 original size:24 final size:23
Alignment explanation
Indices: 91564510--91564555 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
91564500 ATGCTCAATA
91564510 AGGCGTTTCAGAGGGGGAAAATT
1 AGGCGTTTCAGAGGGGGAAAATT
91564533 AGGCGTTTCAGAGGGGGAAAATT
1 AGGCGTTTCAGAGGGGGAAAATT
91564556 TAGGGATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.39, T:0.22
Consensus pattern (23 bp):
AGGCGTTTCAGAGGGGGAAAATT
Found at i:91565617 original size:24 final size:24
Alignment explanation
Indices: 91565589--91565637 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91565579 CCAAAATAAC
91565589 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
91565613 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
91565637 A
1 A
91565638 TAAATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:91565640 original size:11 final size:12
Alignment explanation
Indices: 91565596--91565641 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
91565586 AACAATTAAT
91565596 TTTTATATAAAC
1 TTTTATATAAAC
* * *
91565608 TTTTAAATTAAT
1 TTTTATATAAAC
91565620 TTTTATATAAAC
1 TTTTATATAAAC
91565632 TTTTA-ATAAA
1 TTTTATATAAA
91565642 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:91566298 original size:41 final size:40
Alignment explanation
Indices: 91566253--91566346 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 40
91566243 TTACATGACT
* *
91566253 TTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTC-AGTC
* * * * *
91566294 TTTAGCAGCATTTTACCAAAAGCGCCACTATTGCTCAGTT
1 TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCAGTC
91566334 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
91566347 TTGTCAAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 13 0.30
41 31 0.70
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (40 bp):
TTTAGCGGCGTTTCACCAAAAGCGCCACTAATGCTCAGTC
Found at i:91569063 original size:84 final size:83
Alignment explanation
Indices: 91568916--91569250 Score: 625
Period size: 84 Copynumber: 4.0 Consensus size: 83
91568906 AAAATGCATT
91568916 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGGACCACAACATAATTTTTTATTTAAG
1 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGGACCACAACATAATTTTTTATTTAAG
91568981 AGAGGGCCAACCTATCTA
66 AGAGGGCCAACCTATCTA
*
91568999 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGGAACCGCAACATAATTTTTTATTTAA
1 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGG-ACCACAACATAATTTTTTATTTAA
91569064 GAGAGGGCCAACCTATCTA
65 GAGAGGGCCAACCTATCTA
91569083 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGTGACCACAACATAATTTTTTATTTAA
1 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAG-GACCACAACATAATTTTTTATTTAA
91569148 GAGAGGGCCAACCTATCTA
65 GAGAGGGCCAACCTATCTA
*
91569167 TTTATTCACAATAACTTTTATTTTTTATAATTTATTAAGGGACCACAACATAATTTTTTATTTAA
1 TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAA-GGACCACAACATAATTTTTTATTTAA
91569232 GAGAGGGCCAACCTATCTA
65 GAGAGGGCCAACCTATCTA
91569251 CTCCCTCTAA
Statistics
Matches: 246, Mismatches: 3, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
83 40 0.16
84 204 0.83
85 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (83 bp):
TTTTTTCACAATAACTTTTATTTTTTATAATTTATTAAGGACCACAACATAATTTTTTATTTAAG
AGAGGGCCAACCTATCTA
Found at i:91571054 original size:50 final size:51
Alignment explanation
Indices: 91570960--91571059 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 51
91570950 ATTTTTTTTT
* * *
91570960 CTTTTACATTTTTAATGCAATGATTATATTTCAATTGGGTTCCTT-TATTTC
1 CTTTTACA-TTTTAATACAATGATTAAATTTCAATTCGGTTCCTTATATTTC
91571011 CTTTTACA-TTTAATACAAATGATTAAATTTCAAATTCGG-TCCTTATATT
1 CTTTTACATTTTAATAC-AATGATTAAATTTC-AATTCGGTTCCTTATATT
91571060 ACAATCAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
49 7 0.16
50 18 0.42
51 18 0.42
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (51 bp):
CTTTTACATTTTAATACAATGATTAAATTTCAATTCGGTTCCTTATATTTC
Found at i:91574525 original size:26 final size:26
Alignment explanation
Indices: 91574496--91574549 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
91574486 TTTTATCAAT
* * **
91574496 TTAAAATTTTTAATTAAATGTAATTA
1 TTAAAATTTTAAAATAAATCAAATTA
*
91574522 TTAATATTTTAAAATAAATCAAATTA
1 TTAAAATTTTAAAATAAATCAAATTA
91574548 TT
1 TT
91574550 TTTAATGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
TTAAAATTTTAAAATAAATCAAATTA
Found at i:91588107 original size:24 final size:24
Alignment explanation
Indices: 91588057--91588112 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
91588047 TAAAATAAAA
* *
91588057 TTTTAATATATAAAATTTTATTAT
1 TTTTATTATATAAAATTTTAATAT
* * *
91588081 TTTTATTATTTAATATTTTAATCT
1 TTTTATTATATAAAATTTTAATAT
*
91588105 TTTAATTA
1 TTTTATTA
91588113 CACCAAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTATTATATAAAATTTTAATAT
Done.