Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 305 of 345
Found at i:91904729 original size:24 final size:24
Alignment explanation
Indices: 91904699--91904746 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
91904689 TAAGTAATCC
*
91904699 CTAAAACTTCCCGTTTCATTTAAA
1 CTAAAACTCCCCGTTTCATTTAAA
91904723 CTAAAACTCCCCGTTTCATTTAAA
1 CTAAAACTCCCCGTTTCATTTAAA
91904747 AGAGTTGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.35
Consensus pattern (24 bp):
CTAAAACTCCCCGTTTCATTTAAA
Found at i:91905133 original size:45 final size:47
Alignment explanation
Indices: 91905026--91905134 Score: 123
Period size: 46 Copynumber: 2.3 Consensus size: 47
91905016 CTGAGACAAT
* * *
91905026 AAGACTGAGAACGAAAAAGGACGGGATTTTTGGGTTTCAAGCAAAGAG
1 AAGAATGAGAA-GAAAAAGGACGGGATTTTGGGGTTTCAAGCAAAGAA
** * * *
91905074 AAGTCTGGGAAGAAAAGGGAC-GGCTTTTGGGGTTTCAAGCAAAGAA
1 AAGAATGAGAAGAAAAAGGACGGGATTTTGGGGTTTCAAGCAAAGAA
91905120 AAGAATGAG-AGAAAA
1 AAGAATGAGAAGAAAA
91905135 TAATTCGTGC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
45 6 0.12
46 28 0.54
47 9 0.17
48 9 0.17
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.17
Consensus pattern (47 bp):
AAGAATGAGAAGAAAAAGGACGGGATTTTGGGGTTTCAAGCAAAGAA
Found at i:91905289 original size:41 final size:42
Alignment explanation
Indices: 91905216--91905334 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 42
91905206 CGTCTTTTAA
* *
91905216 ATAAACGCTGCTATTGC-TTACCTTTTGCGGCGTTTTTC-CC
1 ATAAACGCCGCTATTGCTTTACCTATTGCGGCGTTTTTCTCC
*
91905256 ATAAACGCCGCGATTGCTTTACCTATTGCGGCG-TTTTCTCC
1 ATAAACGCCGCTATTGCTTTACCTATTGCGGCGTTTTTCTCC
* ** * *
91905297 ATAAACGTCATTATTGCTTTACTTATTGCAGCGTTTTT
1 ATAAACGCCGCTATTGCTTTACCTATTGCGGCGTTTTT
91905335 TTTATTAGCG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.30
41 43 0.64
42 4 0.06
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.40
Consensus pattern (42 bp):
ATAAACGCCGCTATTGCTTTACCTATTGCGGCGTTTTTCTCC
Found at i:91911067 original size:14 final size:14
Alignment explanation
Indices: 91911048--91911076 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91911038 AATGTATTGT
91911048 TTGTTGTGTTTTTA
1 TTGTTGTGTTTTTA
91911062 TTGTTGTGTTTTTA
1 TTGTTGTGTTTTTA
91911076 T
1 T
91911077 GGAAGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.21, T:0.72
Consensus pattern (14 bp):
TTGTTGTGTTTTTA
Found at i:91915294 original size:18 final size:18
Alignment explanation
Indices: 91915269--91915315 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
91915259 GTATCCATCG
*
91915269 ATTATTCAATAACGGTCA
1 ATTATTCAATAACAGTCA
* *
91915287 ATTGTTCAGTAACAGTCA
1 ATTATTCAATAACAGTCA
91915305 ATTATTCAATA
1 ATTATTCAATA
91915316 CCTTTAGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (18 bp):
ATTATTCAATAACAGTCA
Found at i:91920533 original size:44 final size:44
Alignment explanation
Indices: 91920470--91920560 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
91920460 AACTCTGTTT
* *
91920470 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTGATCAATGTAGGTTATTTTAATA
**
91920514 TTAGTTTCTTACTTAAACTCTGATCAATGTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTGATCAATGTAGGTTATTTTAATA
91920558 TTA
1 TTA
91920561 TTTGACCTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTGATCAATGTAGGTTATTTTAATA
Found at i:91924412 original size:22 final size:22
Alignment explanation
Indices: 91924384--91924441 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
91924374 CACTAGTTTT
*
91924384 CACACGGGCATGTGAAGGGCTG
1 CACACGGGCGTGTGAAGGGCTG
91924406 CACACGGGCGTGTGAAGGGCTG
1 CACACGGGCGTGTGAAGGGCTG
91924428 CACACGGGCGTGTG
1 CACACGGGCGTGTG
91924442 GGTAATTGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.19, C:0.24, G:0.43, T:0.14
Consensus pattern (22 bp):
CACACGGGCGTGTGAAGGGCTG
Found at i:91925665 original size:46 final size:46
Alignment explanation
Indices: 91925613--91925871 Score: 349
Period size: 46 Copynumber: 5.6 Consensus size: 46
91925603 TGGCATAGTG
* *
91925613 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATGTCATGTTGCCATGGTA
** * * *
91925659 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCACGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
** ** *
91925705 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
* * *
91925751 TCTTTCAACCATGGTCTTACACATTTCATATTATGTTGCCATTGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
* *
91925797 TCTTTCAACCACGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
91925843 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
91925872 TTCAAAGAGC
Statistics
Matches: 189, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 4 0.02
46 185 0.98
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
Found at i:91928249 original size:16 final size:16
Alignment explanation
Indices: 91928228--91928260 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
91928218 GGGTTATTAC
91928228 ATTATTTATCTTTTAA
1 ATTATTTATCTTTTAA
91928244 ATTATTTATCTTTTAA
1 ATTATTTATCTTTTAA
91928260 A
1 A
91928261 ATTCCATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTATTTATCTTTTAA
Found at i:91931115 original size:44 final size:44
Alignment explanation
Indices: 91931049--91931137 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
91931039 CTCTGTTTTA
* * *
91931049 AGTTTCTCACTTAAACTCTGATTAGTGTAGGCTATTTTAATATT
1 AGTTTCTCACTTAAAATATGATTAGTGTAAGCTATTTTAATATT
* *
91931093 AGTTTTTCACTTAAAATATGATTAGTGTAAGTTATTTTAATATT
1 AGTTTCTCACTTAAAATATGATTAGTGTAAGCTATTTTAATATT
91931137 A
1 A
91931138 TTTGACCTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (44 bp):
AGTTTCTCACTTAAAATATGATTAGTGTAAGCTATTTTAATATT
Found at i:91932669 original size:29 final size:30
Alignment explanation
Indices: 91932621--91932679 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
91932611 GAATTTGATC
* *
91932621 AAATCAAATTTTCATGTATAAAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
91932651 AAATCAAAATTT-ATATATAAAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
91932680 TTAGACAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTGCACA
Found at i:91937861 original size:19 final size:19
Alignment explanation
Indices: 91937839--91937884 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
91937829 CATAATATAC
*
91937839 ATATATAT-ATATATATAAA
1 ATATATATGAGATAT-TAAA
91937858 ATATATATGAGATATTAAA
1 ATATATATGAGATATTAAA
*
91937877 ATGTATAT
1 ATATATAT
91937885 TCATGGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
ATATATATGAGATATTAAA
Found at i:91954691 original size:2 final size:2
Alignment explanation
Indices: 91954684--91954718 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
91954674 AGAGATGAGA
*
91954684 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91954719 GCTTGAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:91957304 original size:3 final size:3
Alignment explanation
Indices: 91957296--91957352 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
91957286 AGTAGCAAGT
*
91957296 AGA AGA AG- AGA AAA AGAA AGA A-A ATG- AGA AG- AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AG-A AGA AGA A-GA AGA AGA AGA AGA AGA AGA
*
91957339 AGA AGA AGG AGA AG
1 AGA AGA AGA AGA AG
91957353 GAAAAAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.16
3 34 0.77
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:91957325 original size:26 final size:26
Alignment explanation
Indices: 91957296--91957361 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
91957286 AGTAGCAAGT
*
91957296 AGAAGA-AGAGAAAAAGAAAGAA-AATG
1 AGAAGAGA-AGAAAAAG-AAGAAGAAGG
*
91957322 AGAAGAGAAGAAGAAGAAGAAGAAGG
1 AGAAGAGAAGAAAAAGAAGAAGAAGG
*
91957348 AGAAG-GAAAAAAAA
1 AGAAGAGAAGAAAAA
91957362 TAGAAATGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 12 0.35
26 21 0.62
27 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (26 bp):
AGAAGAGAAGAAAAAGAAGAAGAAGG
Found at i:91957447 original size:13 final size:12
Alignment explanation
Indices: 91957425--91957480 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
91957415 GTGTTTTTGC
91957425 TGTTATTATTAT
1 TGTTATTATTAT
91957437 TGTTGATTATTAT
1 TGTT-ATTATTAT
* * *
91957450 TGTTTTTTGTTGT
1 TG-TTATTATTAT
91957463 TAGTTATTATTAT
1 T-GTTATTATTAT
91957476 TGTTA
1 TGTTA
91957481 GTAAAAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 8 0.23
13 24 0.69
14 3 0.09
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (12 bp):
TGTTATTATTAT
Found at i:91957500 original size:25 final size:26
Alignment explanation
Indices: 91957466--91957533 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
91957456 TTGTTGTTAG
*
91957466 TTATTATTATTGTTAGTA-AAAAACT
1 TTATTATTATTGTTAGTACAAAAACC
*
91957491 TTATTATTATTGTTAGTACAAAACCC
1 TTATTATTATTGTTAGTACAAAAACC
91957517 TTATTATTATTGTTAGT
1 TTATTATTATTGTTAGT
91957534 TATTATCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 18 0.45
26 22 0.55
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (26 bp):
TTATTATTATTGTTAGTACAAAAACC
Found at i:91957538 original size:16 final size:16
Alignment explanation
Indices: 91957517--91957549 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
91957507 TACAAAACCC
*
91957517 TTATTATTATTGTTAG
1 TTATTATCATTGTTAG
91957533 TTATTATCATTGTTAG
1 TTATTATCATTGTTAG
91957549 T
1 T
91957550 AAAAAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61
Consensus pattern (16 bp):
TTATTATCATTGTTAG
Found at i:91957545 original size:42 final size:41
Alignment explanation
Indices: 91957491--91957618 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 41
91957481 GTAAAAAACT
*
91957491 TTATTATTATTGTTAGTACAAAACCCTTATTATTATTGTTAG
1 TTATTA-TATTGTTAGTAAAAAACCCTTATTATTATTGTTAG
** ** *
91957533 TTATTATCATTGTTAGTAAAAAACTATTATTAGGATTGTTGG
1 TTATTAT-ATTGTTAGTAAAAAACCCTTATTATTATTGTTAG
*
91957575 TTA-TA-ATTGTTAGTAAAAAAAACC-TA--ATTATTGTTAG
1 TTATTATATTGTTAGT-AAAAAACCCTTATTATTATTGTTAG
91957612 TTATTAT
1 TTATTAT
91957619 TATCGTTGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
37 11 0.16
38 2 0.03
39 11 0.16
40 6 0.09
41 3 0.04
42 37 0.53
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (41 bp):
TTATTATATTGTTAGTAAAAAACCCTTATTATTATTGTTAG
Found at i:91959851 original size:17 final size:17
Alignment explanation
Indices: 91959829--91959862 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91959819 TATGTTGGAG
91959829 TACGTACCAGAGACTGT
1 TACGTACCAGAGACTGT
91959846 TACGTACCAGAGACTGT
1 TACGTACCAGAGACTGT
91959863 CATTGAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (17 bp):
TACGTACCAGAGACTGT
Found at i:91961379 original size:17 final size:17
Alignment explanation
Indices: 91961327--91961384 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
91961317 TTGCAAAGTT
*
91961327 TGTTCCAATTAGATTAA
1 TGTTCCAATTAAATTAA
**
91961344 TGTTGTAATGTATTTAATTAA
1 TGTTCCAAT-TA---AATTAA
91961365 TGTTCCAATTAAATTAA
1 TGTTCCAATTAAATTAA
91961382 TGT
1 TGT
91961385 ATTTAATTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
17 16 0.50
18 2 0.06
20 2 0.06
21 12 0.38
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (17 bp):
TGTTCCAATTAAATTAA
Found at i:91961760 original size:50 final size:50
Alignment explanation
Indices: 91961685--91961785 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
91961675 CATGGAAGAG
*
91961685 AAGTCATATGGCTCGAATGGCATCGATAAACTTGAGCCGGGAGGAGTGTC
1 AAGTCATATGGCTCGAATGGCATCGATAAACTTGAGCCAGGAGGAGTGTC
* *
91961735 AAGTCATATGGCTCGAATTGCATCGATGAACTTGAGCCAGGAGGAGTGTC
1 AAGTCATATGGCTCGAATGGCATCGATAAACTTGAGCCAGGAGGAGTGTC
91961785 A
1 A
91961786 TGCTGTGATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.23
Consensus pattern (50 bp):
AAGTCATATGGCTCGAATGGCATCGATAAACTTGAGCCAGGAGGAGTGTC
Found at i:91964113 original size:13 final size:13
Alignment explanation
Indices: 91964091--91964127 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
91964081 TTTTTTAAAA
91964091 TATATTATTTTCG
1 TATATTATTTTCG
* *
91964104 TATTTTATTTTCT
1 TATATTATTTTCG
91964117 TATATTATTTT
1 TATATTATTTT
91964128 AGTAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (13 bp):
TATATTATTTTCG
Found at i:91964507 original size:149 final size:148
Alignment explanation
Indices: 91964040--91964577 Score: 796
Period size: 151 Copynumber: 3.6 Consensus size: 148
91964030 TTGTTCGGTG
* * *
91964040 ATTTTGGCCCTTTGTTGGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGT
1 ATTTTGGCCCTTTGTTGGTATTTTTTAATTTTCAGATTTTATTTTTTAAAATATAATATTTTCGT
* *
91964105 ATTTTATTTTCTTATATTATTTTAGTAAATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATA
66 ATTTTATTTT-TTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTT-TA
*
91964170 TTAATTTAATAAATAACCCTA
128 TTAATTTAGTAAATAACCCTA
* * *
91964191 ATTTTGGCACTTTGTTGGTATTTTTTTATTTTCAGATTTTATTTTTTAATATATAATATTTTCGT
1 ATTTTGGCCCTTTGTTGGTATTTTTTAATTTTCAGATTTTATTTTTTAAAATATAATATTTTCGT
*
91964256 ATTTTATTTTTTTATATTATTTTAGTACATTATGTTTCAAATGTATTATTTTAG--TTTTTTATT
66 ATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATT
*
91964319 AATTTAGTAAATAACCCTG
130 AATTTAGTAAATAACCCTA
* * * *
91964338 ATTTTGGCCCTTTGTTTGTATTTTTTAAATTTTCGGATTTTA-TTTTTAAAATATACTATTTTCA
1 ATTTTGGCCCTTTGTTGGTATTTTTT-AATTTTCAGATTTTATTTTTTAAAATATAATATTTTCG
*
91964402 TATTTTATTTTTTATATTATTTTAGTACATAATGTTTTAAATGTATTATTTTAGTATTTTTTTAT
65 TATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTTTAT
91964467 TAATTTAGTAAATAACCCTA
129 TAATTTAGTAAATAACCCTA
* * * * *
91964487 ATTTTGGCCTTTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATAGTATTTTTG
1 ATTTTGGCCCTTTGTTGGTATTTTT-TAATTTTCAGATTTTATTTTTTAAAATATAATATTTTCG
91964552 TATTTTA-TTTTTATATTATTTTAGTA
65 TATTTTATTTTTTATATTATTTTAGTA
91964578 AAAAACCCGC
Statistics
Matches: 355, Mismatches: 25, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
146 45 0.13
147 71 0.20
148 18 0.05
149 84 0.24
150 26 0.07
151 107 0.30
152 4 0.01
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (148 bp):
ATTTTGGCCCTTTGTTGGTATTTTTTAATTTTCAGATTTTATTTTTTAAAATATAATATTTTCGT
ATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATTA
ATTTAGTAAATAACCCTA
Found at i:91964634 original size:17 final size:16
Alignment explanation
Indices: 91964611--91964651 Score: 73
Period size: 17 Copynumber: 2.5 Consensus size: 16
91964601 CCCAAAAAAG
91964611 TTTTTTTCGTATTTTA
1 TTTTTTTCGTATTTTA
91964627 TTTCTTTTCGTATTTTA
1 TTT-TTTTCGTATTTTA
91964644 TTTTTTTC
1 TTTTTTTC
91964652 ATTAAGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTTTTCGTATTTTA
Found at i:91965208 original size:28 final size:27
Alignment explanation
Indices: 91965177--91965235 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
91965167 TGCCACCTCC
91965177 TTCTCCTTC-TT-CTTCTACTCTTCTTCT
1 TTCTCCTTCTTTCCTTCT--TCTTCTTCT
91965204 ATTCTCCTTCTTTCCTTCTTCTTCTTCT
1 -TTCTCCTTCTTTCCTTCTTCTTCTTCT
91965232 TTCT
1 TTCT
91965236 TCCCGAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 4 0.14
28 18 0.62
29 2 0.07
30 5 0.17
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.61
Consensus pattern (27 bp):
TTCTCCTTCTTTCCTTCTTCTTCTTCT
Found at i:91965222 original size:14 final size:13
Alignment explanation
Indices: 91965174--91965235 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
91965164 CGGTGCCACC
91965174 TCCTTCTCCTTCT
1 TCCTTCTCCTTCT
91965187 T-CTTCTACTCTTCT
1 TCCTTCT-C-CTTCT
*
91965201 TCTATTCTCCTTCTT
1 TC-CTTCTCCTTC-T
*
91965216 TCCTTCTTCTTCT
1 TCCTTCTCCTTCT
*
91965229 TCTTTCT
1 TCCTTCT
91965236 TCCCGAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
12 5 0.12
13 9 0.22
14 18 0.45
15 4 0.10
16 4 0.10
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60
Consensus pattern (13 bp):
TCCTTCTCCTTCT
Found at i:91965527 original size:11 final size:11
Alignment explanation
Indices: 91965511--91965540 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
91965501 TTTTTTTGTT
91965511 GTATTATTTTA
1 GTATTATTTTA
91965522 GTATTATTTTA
1 GTATTATTTTA
*
91965533 TTATTATT
1 GTATTATT
91965541 ATTATTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
GTATTATTTTA
Found at i:91965545 original size:17 final size:16
Alignment explanation
Indices: 91965514--91965548 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
91965504 TTTTGTTGTA
91965514 TTATTTTAGTATTATT
1 TTATTTTAGTATTATT
*
91965530 TTATTATTATTATTATT
1 TTATT-TTAGTATTATT
91965547 TT
1 TT
91965549 GTAAAAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTATTTTAGTATTATT
Found at i:91967002 original size:7 final size:7
Alignment explanation
Indices: 91966990--91967019 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
91966980 TGCCATTTAT
91966990 AAATAAA
1 AAATAAA
91966997 AAATAAA
1 AAATAAA
91967004 AAATAAA
1 AAATAAA
91967011 AAATAAA
1 AAATAAA
91967018 AA
1 AA
91967020 TTTACTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAATAAA
Found at i:91967944 original size:6 final size:6
Alignment explanation
Indices: 91967933--91967960 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
91967923 AGTGAAGAAA
91967933 CGGAGC CGGAGC CGGAGC CGGAGC CGGA
1 CGGAGC CGGAGC CGGAGC CGGAGC CGGA
91967961 CTCTGAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.50, T:0.00
Consensus pattern (6 bp):
CGGAGC
Found at i:91970073 original size:2 final size:2
Alignment explanation
Indices: 91970066--91970106 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
91970056 TACTTTCACA
*
91970066 AT AT AT AT AT -T AT AT AT -T TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91970106 A
1 A
91970107 AATTTTAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:91971574 original size:51 final size:51
Alignment explanation
Indices: 91971514--91971618 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
91971504 CAAGCTTTAA
91971514 AACATATATCAAATTTAGCTTGCTAACATAGAATCTAAGTAAATACAAAGT
1 AACATATATCAAATTTAGCTTGCTAACATAGAATCTAAGTAAATACAAAGT
91971565 AACATATATCAAATTTAGCTTGCTAACATAGAATCTAAGTAAATACAAAGT
1 AACATATATCAAATTTAGCTTGCTAACATAGAATCTAAGTAAATACAAAGT
91971616 AAC
1 AAC
91971619 TCACTGAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (51 bp):
AACATATATCAAATTTAGCTTGCTAACATAGAATCTAAGTAAATACAAAGT
Found at i:91973623 original size:21 final size:22
Alignment explanation
Indices: 91973597--91973645 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
91973587 TATTGCAAAC
*
91973597 TTTTGGCACATCTCAACTTAGT
1 TTTTGGCACATCTCAACCTAGT
*
91973619 TTTGGTGGTACATCTCAACCTAGT
1 TTT--TGGCACATCTCAACCTAGT
91973643 TTT
1 TTT
91973646 GGTATCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
24 20 0.87
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (22 bp):
TTTTGGCACATCTCAACCTAGT
Found at i:91985797 original size:29 final size:29
Alignment explanation
Indices: 91985764--91985825 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
91985754 TGACTAACGG
*
91985764 AAGTACTAATTTGAGAAAAAAAG-TAGTTT
1 AAGTAC-AATTTGAGAAAAAAAGAAAGTTT
* * *
91985793 AAGTACCATTTGTGACAAAAAGAAAGTTT
1 AAGTACAATTTGAGAAAAAAAGAAAGTTT
91985822 AAGT
1 AAGT
91985826 GCCAAGATCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (29 bp):
AAGTACAATTTGAGAAAAAAAGAAAGTTT
Found at i:91991569 original size:33 final size:34
Alignment explanation
Indices: 91991515--91991593 Score: 124
Period size: 33 Copynumber: 2.3 Consensus size: 34
91991505 ATTGAAAAAG
91991515 TTAATTTATCCATTCAATTTAAATTAAATAAA-TTT
1 TTAATTT-T-CATTCAATTTAAATTAAATAAATTTT
*
91991550 TTAATTTTCATTCAGTTTAAATTAAATAAATTTT
1 TTAATTTTCATTCAATTTAAATTAAATAAATTTT
91991584 TTAATTTTCA
1 TTAATTTTCA
91991594 AATGTAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 21 0.50
34 14 0.33
35 7 0.17
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.52
Consensus pattern (34 bp):
TTAATTTTCATTCAATTTAAATTAAATAAATTTT
Found at i:91991669 original size:52 final size:52
Alignment explanation
Indices: 91991613--91991721 Score: 134
Period size: 52 Copynumber: 2.1 Consensus size: 52
91991603 TAACTTTTCC
* * *
91991613 AAATAATTT-TATAAAATAATTTATTT-ATTGTAAAATTTTCAAATATTAGATA
1 AAATAATTTATATAAAATAATTTATTTAAAT-TAAAAATTTCAAAT-TTAAATA
* *
91991665 AAAT-ATTTATATAAATTAATTTATTTAAATTAAAAATTTCAAATTTAAATT
1 AAATAATTTATATAAAATAATTTATTTAAATTAAAAATTTCAAATTTAAATA
91991716 AAATAA
1 AAATAA
91991722 ATTCAATGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
51 13 0.27
52 34 0.69
53 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (52 bp):
AAATAATTTATATAAAATAATTTATTTAAATTAAAAATTTCAAATTTAAATA
Found at i:91998854 original size:20 final size:21
Alignment explanation
Indices: 91998814--91998853 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
91998804 AAAAACATAT
91998814 AAAAAAAACAAAAAGGAAAAG
1 AAAAAAAACAAAAAGGAAAAG
91998835 AAAAAAAGA-AAAAAGGAAA
1 AAAAAAA-ACAAAAAGGAAA
91998854 GGCCAAGGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (21 bp):
AAAAAAAACAAAAAGGAAAAG
Found at i:91999746 original size:46 final size:46
Alignment explanation
Indices: 91999692--91999797 Score: 140
Period size: 46 Copynumber: 2.3 Consensus size: 46
91999682 TGAAAAAGCC
* * *
91999692 ACAAATCCTGTACTACTAAGCTGTAGCGGAATGGATTGAAGAAGAT
1 ACAAATCCTATACCACTAAGCTGCAGCGGAATGGATTGAAGAAGAT
* * * * *
91999738 ACAAATCCTATACCCCTAAGTTGCAGTGGGATGGATTGAAGATGAT
1 ACAAATCCTATACCACTAAGCTGCAGCGGAATGGATTGAAGAAGAT
91999784 ACAAATCCTATACC
1 ACAAATCCTATACC
91999798 CTTGAGTTGC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (46 bp):
ACAAATCCTATACCACTAAGCTGCAGCGGAATGGATTGAAGAAGAT
Found at i:91999798 original size:46 final size:46
Alignment explanation
Indices: 91999722--91999826 Score: 174
Period size: 46 Copynumber: 2.3 Consensus size: 46
91999712 CTGTAGCGGA
91999722 ATGGATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGG
1 ATGGATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGG
* * *
91999768 ATGGATTGAAGATGATACAAATCCTATACCCTTGAGTTGCAGTGGG
1 ATGGATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGG
*
91999814 ATGGATGGAAGAA
1 ATGGATTGAAGAA
91999827 ACCAAAAATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (46 bp):
ATGGATTGAAGAAGATACAAATCCTATACCCCTAAGTTGCAGTGGG
Found at i:92002110 original size:3 final size:3
Alignment explanation
Indices: 92002104--92002179 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
92002094 ATCCTCCTCC
92002104 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92002152 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
92002180 TACATTTATC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:92007237 original size:20 final size:18
Alignment explanation
Indices: 92007204--92007260 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 18
92007194 TATATAGATT
92007204 TTTAAAA-T-TTTTAATA
1 TTTAAAATTATTTTAATA
92007220 TTTAAAATCTGATTTTAAT-
1 TTTAAAAT-T-ATTTTAATA
*
92007239 TTTTAAATTATTTT-ATA
1 TTTAAAATTATTTTAATA
92007256 TTTAA
1 TTTAA
92007261 TGCTCAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 9 0.26
17 9 0.26
18 2 0.06
19 7 0.21
20 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTAAAATTATTTTAATA
Found at i:92025717 original size:42 final size:42
Alignment explanation
Indices: 92025568--92025804 Score: 224
Period size: 44 Copynumber: 5.5 Consensus size: 42
92025558 ATTCATAAGC
* * * *
92025568 CTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGA-TGA-AGAT
* * *
92025612 CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGATGAA-GAT
* * * * *
92025655 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTT-AACCCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
* *
92025697 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAAC-CCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
* * * * **
92025740 CTTAACCCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGC
1 CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGATGA-AGAT
92025783 CTTAACCCCCTAAGCAGTAGGG
1 CTTAA-CCCCTAAGCAGTAGGG
92025805 TAATAGCCTG
Statistics
Matches: 159, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.01
42 59 0.37
43 25 0.16
44 73 0.46
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (42 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGACCGAAGATGAAGAT
Found at i:92025724 original size:86 final size:86
Alignment explanation
Indices: 92025568--92025767 Score: 271
Period size: 86 Copynumber: 2.3 Consensus size: 86
92025558 ATTCATAAGC
* *
92025568 CTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGTAGGG
1 CTTAACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCTAAGCAGTAGGG
*
92025633 AAACAGATCGAAGACGAAGGGT
66 AAACAGATCGAAGACGAA-GAT
* * * *
92025655 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTT-AACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAAC-CCCTAAGCAGTAG
*
92025717 GGAAACAGATCGAAGATGAAGAT
64 GGAAACAGATCGAAGACGAAGAT
*
92025740 CTTAACCCCTAAGCAGTAGGGAAACAGA
1 CTTAACCCCTAAGCAGTAGGGTAACAGA
92025768 TCAAAGAAGA
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
84 22 0.22
85 17 0.17
86 33 0.33
87 4 0.04
88 24 0.24
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (86 bp):
CTTAACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATCTTAACCCCTAAGCAGTAGGG
AAACAGATCGAAGACGAAGAT
Found at i:92025787 original size:128 final size:130
Alignment explanation
Indices: 92025574--92025807 Score: 348
Period size: 128 Copynumber: 1.8 Consensus size: 130
92025564 AAGCCTTAAC
* *
92025574 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGAAACAGGCTGAAGATTGACAGATCTTAACCCCTAAGCAGTAGGGAAACAG
* * * * *
92025639 ATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGACCGAATTGCAGATCTTATCT
66 ATCAAAGAAGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATCT
*
92025704 CCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-AGATCTTAACCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGAAACAGGCT-GAAGATTGACAGATCTTAACCCCTAAGCAGTAGGGAAACA
* *
92025766 GATCAAAGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAA
65 GATCAAAGAAGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAA
92025808 TAGCCTGAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
128 65 0.70
129 4 0.04
130 24 0.26
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (130 bp):
CCCTAAGCAGTAGGGAAACAGGCTGAAGATTGACAGATCTTAACCCCTAAGCAGTAGGGAAACAG
ATCAAAGAAGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATCT
Found at i:92025794 original size:86 final size:86
Alignment explanation
Indices: 92025571--92025804 Score: 235
Period size: 86 Copynumber: 2.7 Consensus size: 86
92025561 CATAAGCCTT
* * * **
92025571 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGTAGGGAA
1 AACCCCTAAGCAGTAGGGAAACAGACCG-A-ATAGA-AGATCTTAACCCCCTAAGCAGTAGGGAA
*
92025635 ACAGATCGAAGACGAAGGGTCTTA
63 ACAGATCGAAGACGAAGGATCTTA
* * * * * * *
92025659 AACCCCTAATCGGTAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGGGAAACA
1 AACCCCTAAGCAGTAGGGAAACAGACCGAATAGAAGATCTTAACCCCCTAAGCAGTAGGGAAACA
*
92025724 GATCGAAGATGAA-GATCTT-
66 GATCGAAGACGAAGGATCTTA
*
92025743 AACCCCTAAGCAGTAGGGAAACAGATC-AA-AGAAGATGGGCCTTAACCCCCTAAGCAGTAGGG
1 AACCCCTAAGCAGTAGGGAAACAGACCGAATAGAAGAT----CTTAACCCCCTAAGCAGTAGGG
92025805 TAATAGCCTG
Statistics
Matches: 123, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
82 5 0.04
83 2 0.02
84 23 0.19
85 13 0.11
86 55 0.45
87 1 0.01
88 24 0.20
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (86 bp):
AACCCCTAAGCAGTAGGGAAACAGACCGAATAGAAGATCTTAACCCCCTAAGCAGTAGGGAAACA
GATCGAAGACGAAGGATCTTA
Found at i:92026294 original size:86 final size:86
Alignment explanation
Indices: 92026094--92026380 Score: 364
Period size: 86 Copynumber: 3.3 Consensus size: 86
92026084 TTCATAAGGT
* ***
92026094 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
* *
92026159 TGTAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
92026180 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
92026245 AGCAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* * * ***
92026266 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTATACAGATC-TAAAACCCTAAGCAGTAG-G
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAAT-TGCAGATCTTATCTCCCTAAGCAGTAGTG
* * * *
92026329 GAAACAGATCAAAGATGACA-AGC
65 G-AGCAGATCGAAGACGA-AGAAC
* *
92026352 CTTAATCCCTTAAGCAGTAGGGTAACAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGG
92026381 CTGAAAATTA
Statistics
Matches: 180, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
85 2 0.01
86 170 0.94
87 8 0.04
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGAAC
Found at i:92028333 original size:2 final size:2
Alignment explanation
Indices: 92028297--92028325 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92028287 GTATTTTCAT
92028297 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92028326 GTTATATAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92039060 original size:20 final size:21
Alignment explanation
Indices: 92039029--92039074 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
92039019 TTCGATGCCC
92039029 TTAAAGTTTTGAGCTCTGGTT
1 TTAAAGTTTTGAGCTCTGGTT
*
92039050 TTAAA-TTTTGAGCTTTGGTT
1 TTAAAGTTTTGAGCTCTGGTT
92039070 TTAAA
1 TTAAA
92039075 ACAAATTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.24, C:0.07, G:0.20, T:0.50
Consensus pattern (21 bp):
TTAAAGTTTTGAGCTCTGGTT
Found at i:92039547 original size:20 final size:20
Alignment explanation
Indices: 92039522--92039578 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
92039512 TTAATCACCT
92039522 AATTAACTTAAATTAATCAA-
1 AATTAACTTAAATTAAT-AAC
*
92039542 AATTAA-TTAAACTTAGTAAC
1 AATTAACTTAAA-TTAATAAC
92039562 AATT-ACTTAAAATTAAT
1 AATTAACTT-AAATTAAT
92039579 GTATGTTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 8 0.26
20 20 0.65
21 3 0.10
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.37
Consensus pattern (20 bp):
AATTAACTTAAATTAATAAC
Found at i:92040043 original size:22 final size:23
Alignment explanation
Indices: 92040008--92040056 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
92039998 TTTTCTTTAG
*
92040008 TTTTGTTTTGCTTT-TGTATTTTC
1 TTTTCTTTTGCTTTAT-TATTTTC
92040031 TTTTCTTTT-CTTTATTATTTTC
1 TTTTCTTTTGCTTTATTATTTTC
92040053 TTTT
1 TTTT
92040057 TATTTAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.06, C:0.10, G:0.06, T:0.78
Consensus pattern (23 bp):
TTTTCTTTTGCTTTATTATTTTC
Found at i:92043950 original size:4 final size:4
Alignment explanation
Indices: 92043941--92043978 Score: 67
Period size: 4 Copynumber: 9.2 Consensus size: 4
92043931 AAAATCACAG
92043941 CATA CATA CATA CATA CAATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA C-ATA CATA CATA CATA CATA C
92043979 CTGAAGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:92043964 original size:17 final size:17
Alignment explanation
Indices: 92043942--92043975 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92043932 AAATCACAGC
92043942 ATACATACATACATACA
1 ATACATACATACATACA
92043959 ATACATACATACATACA
1 ATACATACATACATACA
92043976 TACCTGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (17 bp):
ATACATACATACATACA
Found at i:92044812 original size:17 final size:18
Alignment explanation
Indices: 92044777--92044811 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92044767 ACTTTTTTTC
*
92044777 TTTTTCTTTCTCCCAAAA
1 TTTTACTTTCTCCCAAAA
*
92044795 TTTTACTTTTTCCCAAA
1 TTTTACTTTCTCCCAAA
92044812 TCCCAAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTACTTTCTCCCAAAA
Found at i:92045014 original size:21 final size:22
Alignment explanation
Indices: 92044984--92045026 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
92044974 ATTTTCTGTT
92044984 GGTATCAATTTCACATTTTATC
1 GGTATCAATTTCACATTTTATC
92045006 GGTA-CAATTTCACATTTTATC
1 GGTATCAATTTCACATTTTATC
92045027 TTTAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (22 bp):
GGTATCAATTTCACATTTTATC
Found at i:92045441 original size:36 final size:36
Alignment explanation
Indices: 92045394--92045467 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
92045384 TCGACTCAAT
*
92045394 TGAACGCTCACCTCTAACTCCAACATGCACGACATG
1 TGAACGCTCACCTCTAACTCCAACACGCACGACATG
92045430 TGAACGCTCACCTCTAACTCCAACACGCACGACATG
1 TGAACGCTCACCTCTAACTCCAACACGCACGACATG
92045466 TG
1 TG
92045468 CCTAAGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.19
Consensus pattern (36 bp):
TGAACGCTCACCTCTAACTCCAACACGCACGACATG
Found at i:92045891 original size:2 final size:2
Alignment explanation
Indices: 92045884--92045920 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92045874 TAAAGATCTT
92045884 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92045921 TAGATCAGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92046202 original size:41 final size:40
Alignment explanation
Indices: 92046121--92046305 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
92046111 TGAGCATTAG
** * *
92046121 CGGCGCTTTACAAAAAACGCCGCTA-AAG-ATCAACTATTAA
1 CGGCGCTTTTTAAAAAACGCCGCTATATGTA-CACCT-TTAA
* * *
92046161 CGGCGCTTTTTTAAAAAATGCCACAATATGTACACCTTTAA
1 CGGCGC-TTTTTAAAAAACGCCGCTATATGTACACCTTTAA
* * *
92046202 CGGCGCTTTTTGAAAAACGCCGCTATAAGTACACCTTTAG
1 CGGCGCTTTTTAAAAAACGCCGCTATATGTACACCTTTAA
* * *
92046242 CAGCGCTTTTTGAAAAACGCCGCTATATGTACACCTTTAG
1 CGGCGCTTTTTAAAAAACGCCGCTATATGTACACCTTTAA
*
92046282 CGGCGTTTTTTGAAAAAACGCCGC
1 CGGCGCTTTTT-AAAAAACGCCGC
92046306 AAAAATTTTT
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 81 0.66
41 35 0.28
42 6 0.05
43 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
CGGCGCTTTTTAAAAAACGCCGCTATATGTACACCTTTAA
Found at i:92046208 original size:81 final size:80
Alignment explanation
Indices: 92046121--92046305 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 80
92046111 TGAGCATTAG
* * *
92046121 CGGCGCTTTACAAAAAACGCCGCTA-AAG-ATCAACTATTAACGGCGCTTTTTTAAAAAATGCCA
1 CGGCGCTTTTCAAAAAACGCCGCTATAAGTA-CAACT-TTAACAGCGC-TTTTTAAAAAACGCCA
92046184 CAATATGTACACCTTTAA
63 CAATATGTACACCTTTAA
** * * * * *
92046202 CGGCGCTTTTTGAAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGAAAAACGCCGCTA
1 CGGCGCTTTTCAAAAAACGCCGCTATAAGTACAACTTTAACAGCGCTTTTTAAAAAACGCCACAA
*
92046267 TATGTACACCTTTAG
66 TATGTACACCTTTAA
* *
92046282 CGGCGTTTTTTGAAAAAACGCCGC
1 CGGCG-CTTTTCAAAAAACGCCGC
92046306 AAAAATTTTT
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 34 0.39
81 45 0.52
82 7 0.08
83 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (80 bp):
CGGCGCTTTTCAAAAAACGCCGCTATAAGTACAACTTTAACAGCGCTTTTTAAAAAACGCCACAA
TATGTACACCTTTAA
Found at i:92046292 original size:80 final size:82
Alignment explanation
Indices: 92046132--92046305 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 82
92046122 GGCGCTTTAC
* *
92046132 AAAAAACGCCGCTAAAGATCAACTATTAACGGCGCTTTTTTAAAAAATGCCACAATATGTACACC
1 AAAAAACGCCGCTAAAGATCAACTATTAACAGCGCTTTTTTAAAAAACGCCACAATATGTACACC
92046197 TTTAACGGCGCTTTTTG
66 TTTAACGGCGCTTTTTG
* * * * *
92046214 -AAAAACGCCGCTATAAG-TACACCT-TTAGCAGCGC-TTTTTGAAAAACGCCGCTATATGTACA
1 AAAAAACGCCGCTA-AAGAT-CAACTATTAACAGCGCTTTTTTAAAAAACGCCACAATATGTACA
* *
92046275 CCTTTAGCGGCGTTTTTTG
64 CCTTTAACGGCGCTTTTTG
92046294 AAAAAACGCCGC
1 AAAAAACGCCGC
92046306 AAAAATTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
80 40 0.50
81 33 0.41
82 7 0.09
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (82 bp):
AAAAAACGCCGCTAAAGATCAACTATTAACAGCGCTTTTTTAAAAAACGCCACAATATGTACACC
TTTAACGGCGCTTTTTG
Found at i:92046386 original size:39 final size:39
Alignment explanation
Indices: 92046343--92046450 Score: 155
Period size: 40 Copynumber: 2.7 Consensus size: 39
92046333 CTTTTGGTGG
*
92046343 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTATAC
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACAC
* *
92046382 CTTTAGCGGCGCTTCTTGAAAAACGCCGCTATATGTACAC
1 CTTTAGCGGCGCTT-TTTAAAAACGCCGCTATAGGTACAC
92046422 CTTTAGCGGCG-TTTTTCAAAAAACGCCGC
1 CTTTAGCGGCGCTTTTT--AAAAACGCCGC
92046451 AAAAAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.03
39 16 0.26
40 44 0.71
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (39 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACAC
Found at i:92046548 original size:143 final size:146
Alignment explanation
Indices: 92046196--92046551 Score: 585
Period size: 143 Copynumber: 2.5 Consensus size: 146
92046186 ATATGTACAC
*
92046196 CTTTAACGGCGCTTTTTGAAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGAAAAACG
1 CTTTAGCGGCGCTTTTT-AAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGAAAAACG
* *
92046261 CCGCTATATGTACACCTTTAGCGGCGTTTTTTGAAAAAACGCCGCAAAAATTTTTGCAAAACTCC
65 CCGCTATATGTACACCTTTAGCGGCGTTTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACTCC
92046326 ACGTGAGCTTTTGGTGG
130 ACGTGAGCTTTTGGTGG
* * * *
92046343 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTATACCTTTAGCGGCGCTTCTTGAAAAACGC
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGAAAAACGC
92046408 CGCTATATGTACACCTTTAGCGGCG-TTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACT-C-
66 CGCTATATGTACACCTTTAGCGGCGTTTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACTCCA
92046470 CGTGAGCTTTTGGTGG
131 CGTGAGCTTTTGGTGG
* *
92046486 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATATGTACACCTTTAGCAGCG-TTTTTCATAAAACG
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGA-AAAACG
92046550 CC
65 CC
92046552 ACAAAAAATA
Statistics
Matches: 196, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
142 5 0.03
143 71 0.36
144 1 0.01
145 34 0.17
146 69 0.35
147 16 0.08
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (146 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAAGTACACCTTTAGCAGCGCTTTTTGAAAAACGC
CGCTATATGTACACCTTTAGCGGCGTTTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACTCCA
CGTGAGCTTTTGGTGG
Found at i:92046750 original size:21 final size:21
Alignment explanation
Indices: 92046704--92046755 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
92046694 TTAATTATCA
* *
92046704 TTATAGTTTAGGGCTTACAGT
1 TTATGGTTAAGGGCTTACAGT
*
92046725 ATATGGTTAAGGGCTTA-ATGT
1 TTATGGTTAAGGGCTTACA-GT
92046746 TTATGAGTTA
1 TTATG-GTTA
92046756 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.27, C:0.06, G:0.25, T:0.42
Consensus pattern (21 bp):
TTATGGTTAAGGGCTTACAGT
Found at i:92046797 original size:14 final size:13
Alignment explanation
Indices: 92046765--92046825 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 13
92046755 ACTATTTTAA
*
92046765 GGTTTATGGATTG
1 GGTTTAAGGATTG
*
92046778 GGTTTAAGGATTAT
1 GGTTTAAGGATT-G
*
92046792 GGTTTAAGG-GT-
1 GGTTTAAGGATTG
*
92046803 GGTTTAAGGGTTGG
1 GGTTTAAGGATT-G
92046817 GGTTTAAGG
1 GGTTTAAGG
92046826 TTTAGGTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 9 0.22
12 1 0.03
13 12 0.30
14 18 0.45
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (13 bp):
GGTTTAAGGATTG
Found at i:92046808 original size:25 final size:25
Alignment explanation
Indices: 92046778--92046825 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92046768 TTATGGATTG
*
92046778 GGTTTAAGGATTATGGTTTAAGGGT
1 GGTTTAAGGATTAGGGTTTAAGGGT
* *
92046803 GGTTTAAGGGTTGGGGTTTAAGG
1 GGTTTAAGGATTAGGGTTTAAGG
92046826 TTTAGGTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.38
Consensus pattern (25 bp):
GGTTTAAGGATTAGGGTTTAAGGGT
Found at i:92046923 original size:7 final size:7
Alignment explanation
Indices: 92046803--92046923 Score: 68
Period size: 7 Copynumber: 17.0 Consensus size: 7
92046793 GTTTAAGGGT
92046803 GGTTTAAG
1 GGTTT-AG
*
92046811 GG-TTGG
1 GGTTTAG
*
92046817 GGTTTAA
1 GGTTTAG
92046824 GGTTTA-
1 GGTTTAG
92046830 GGTGTTAGG
1 GGT-TTA-G
*
92046839 GGTTAAG
1 GGTTTAG
92046846 GG-TTAG
1 GGTTTAG
* *
92046852 TGGTTCAT
1 -GGTTTAG
92046860 GGTTTAG
1 GGTTTAG
*
92046867 GGTTTAT
1 GGTTTAG
*
92046874 GTTTTAG
1 GGTTTAG
*
92046881 GATTTAG
1 GGTTTAG
*
92046888 GATTTAG
1 GGTTTAG
*
92046895 GGTTTAA
1 GGTTTAG
*
92046902 GGATTACG
1 GGTTTA-G
*
92046910 AGTTTAG
1 GGTTTAG
92046917 GGTTTAG
1 GGTTTAG
92046924 ATTAATTAAT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
6 9 0.10
7 64 0.74
8 10 0.12
9 3 0.03
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:92047039 original size:7 final size:7
Alignment explanation
Indices: 92047018--92047098 Score: 65
Period size: 7 Copynumber: 11.4 Consensus size: 7
92047008 TTAATTATCA
*
92047018 TTATAGT
1 TTATGGT
*
92047025 TTAGGGT
1 TTATGGT
92047032 TTATGGT
1 TTATGGT
*
92047039 TTAAGGT
1 TTATGGT
**
92047046 TTAAAGT
1 TTATGGT
92047053 TTATGAG-
1 TTATG-GT
*
92047060 TTACTGTT
1 TTA-TGGT
*
92047068 TTAAGGT
1 TTATGGT
*
92047075 TTATGGA
1 TTATGGT
92047082 TTATGGT
1 TTATGGT
92047089 TTATGGT
1 TTATGGT
92047096 TTA
1 TTA
92047099 AGGGCTGGGG
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
7 52 0.90
8 6 0.10
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (7 bp):
TTATGGT
Found at i:92047047 original size:21 final size:20
Alignment explanation
Indices: 92047018--92047098 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
92047008 TTAATTATCA
* *
92047018 TTATAGTTTAGGGTTTATGG
1 TTATGGTTTAAGGTTTATGG
* *
92047038 TTTAAGGTTTAAAGTTTATGAG
1 -TTATGGTTTAAGGTTTATG-G
*
92047060 TTACTGTTTTAAGGTTTATGG
1 TTA-TGGTTTAAGGTTTATGG
*
92047081 ATTATGGTTTATGGTTTA
1 -TTATGGTTTAAGGTTTA
92047099 AGGGCTGGGG
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
21 31 0.65
22 17 0.35
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (20 bp):
TTATGGTTTAAGGTTTATGG
Found at i:92047934 original size:8 final size:8
Alignment explanation
Indices: 92047923--92048033 Score: 131
Period size: 8 Copynumber: 14.0 Consensus size: 8
92047913 TTTAAAATTT
92047923 AAAATTAA
1 AAAATTAA
92047931 AAAATTAA
1 AAAATTAA
92047939 AAAATTAA
1 AAAATTAA
92047947 AAAATTAA
1 AAAATTAA
92047955 AAAATTAA
1 AAAATTAA
92047963 AAAATTAA
1 AAAATTAA
*
92047971 AAAATAAAAA
1 AAAAT--TAA
*
92047981 AAAAATAA
1 AAAATTAA
92047989 AAAA-TAA
1 AAAATTAA
92047996 AAAA-TAA
1 AAAATTAA
92048003 AAAA-TAA
1 AAAATTAA
92048010 AAAA-TAA
1 AAAATTAA
*
92048017 CAAACTTAA
1 -AAAATTAA
*
92048026 AAATTTAA
1 AAAATTAA
92048034 TATTTAATAT
Statistics
Matches: 94, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
7 24 0.26
8 61 0.65
9 3 0.03
10 6 0.06
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATTAA
Found at i:92048101 original size:17 final size:19
Alignment explanation
Indices: 92048059--92048103 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
92048049 TTCATATTTC
92048059 ATATTAAAAAGTAAAAAAT
1 ATATTAAAAAGTAAAAAAT
92048078 ATATTAAAAA-TAAAAAA-
1 ATATTAAAAAGTAAAAAAT
*
92048095 ATTTTAAAA
1 ATATTAAAA
92048104 TTAAGTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.32
18 7 0.28
19 10 0.40
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
ATATTAAAAAGTAAAAAAT
Found at i:92051355 original size:15 final size:16
Alignment explanation
Indices: 92051335--92051367 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
92051325 TATTATTTTT
92051335 AATATATATGAT-TAA
1 AATATATATGATCTAA
92051350 AATATATATGATCTAA
1 AATATATATGATCTAA
92051366 AA
1 AA
92051368 GCAAGAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (16 bp):
AATATATATGATCTAA
Found at i:92052966 original size:44 final size:42
Alignment explanation
Indices: 92052816--92052999 Score: 235
Period size: 42 Copynumber: 4.3 Consensus size: 42
92052806 GGTAATAATT
**
92052816 TTTAGCGGCGTTT-TTCAGAAAAGCGCGCTAAAGGTCCTGATC
1 TTTAGCGGCGTTTGTGGA-AAAAGCGCGCTAAAGGTCCTGATC
* * * *
92052858 TTTAGCGGCGTTTATAGAAAAAGCGCGCTAAAAGTCCTGATA
1 TTTAGCGGCGTTTGTGGAAAAAGCGCGCTAAAGGTCCTGATC
*
92052900 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATC
1 TTTAGCGGCGTTTGTGGAAAAAGCG-CGCTAAAGGTCCTGATC
* *
92052943 TTTTAGCGGCGTTTGTGGAAAAAGCACCGCTAAAGGTCATGATC
1 -TTTAGCGGCGTTTGTGGAAAAAGC-GCGCTAAAGGTCCTGATC
*
92052987 TTTAGCGACGTTT
1 TTTAGCGGCGTTT
92053000 TTTCAAATAA
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
42 57 0.46
43 29 0.23
44 39 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGCGCTAAAGGTCCTGATC
Found at i:92053219 original size:22 final size:22
Alignment explanation
Indices: 92053191--92053242 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
92053181 AAAAAAAACC
92053191 TGCTATTTTTTTATTGCTTTCT
1 TGCTATTTTTTTATTGCTTTCT
*
92053213 TGCTA-TTTTTTATTGTTTTCT
1 TGCTATTTTTTTATTGCTTTCT
92053234 T-CGTATTTT
1 TGC-TATTTT
92053243 CTTAGTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 18 0.67
22 8 0.30
ACGTcount: A:0.10, C:0.12, G:0.10, T:0.69
Consensus pattern (22 bp):
TGCTATTTTTTTATTGCTTTCT
Found at i:92056616 original size:21 final size:21
Alignment explanation
Indices: 92056592--92056632 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
92056582 TACCTATAGT
*
92056592 GGTATCGCGAAATCCACCTTA
1 GGTATCACGAAATCCACCTTA
*
92056613 GGTATCACGATATCCACCTT
1 GGTATCACGAAATCCACCTT
92056633 CCAAGAGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (21 bp):
GGTATCACGAAATCCACCTTA
Found at i:92058882 original size:16 final size:17
Alignment explanation
Indices: 92058861--92058904 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
92058851 GTCTCTTGCT
*
92058861 AAAAGAAG-GAGAAAGA
1 AAAAGAAGAGAAAAAGA
92058877 AAAAGAAGAGAAAAAG-
1 AAAAGAAGAGAAAAAGA
*
92058893 AAAGGAAGAGAA
1 AAAAGAAGAGAA
92058905 GTGGTGTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
AAAAGAAGAGAAAAAGA
Found at i:92066515 original size:9 final size:9
Alignment explanation
Indices: 92066503--92066545 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
92066493 ATAACATAAA
*
92066503 AATAATTCT
1 AATAATACT
92066512 AATAATACT
1 AATAATACT
*
92066521 AATAATAAT
1 AATAATACT
92066530 AATAATAAC-
1 AATAAT-ACT
92066539 AATAATA
1 AATAATA
92066546 ATTGGGGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (9 bp):
AATAATACT
Found at i:92066526 original size:3 final size:3
Alignment explanation
Indices: 92066511--92066547 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
92066501 AAAATAATTC
* *
92066511 TAA TAA TAC TAA TAA TAA TAA TAA TAA CAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
92066548 TGGGGTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:92066764 original size:15 final size:15
Alignment explanation
Indices: 92066734--92066786 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
92066724 GGAGAGGGGA
* *
92066734 AAAAGTGAAGGAAAG
1 AAAAGAGAAAGAAAG
92066749 AAGAA-AGAAAGAAAG
1 AA-AAGAGAAAGAAAG
*
92066764 AAAAGAGAAGGAAAG
1 AAAAGAGAAAGAAAG
92066779 -AAAGAGAA
1 AAAAGAGAA
92066787 GGGAAAAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 10 0.30
15 21 0.64
16 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (15 bp):
AAAAGAGAAAGAAAG
Found at i:92066766 original size:19 final size:19
Alignment explanation
Indices: 92066745--92066798 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
92066735 AAAGTGAAGG
92066745 AAAGAAGAAAGAAAGAAAGA
1 AAAG-AGAAAGAAAGAAAGA
*
92066765 AAAGAGAAGGAAAGAAAGA
1 AAAGAGAAAGAAAGAAAGA
* *
92066784 GAAGGGAAA-AAAGAA
1 AAAGAGAAAGAAAGAA
92066799 GAGAGGGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 6 0.20
19 20 0.67
20 4 0.13
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAGAGAAAGAAAGAAAGA
Found at i:92075595 original size:47 final size:49
Alignment explanation
Indices: 92075532--92075669 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 49
92075522 CATTGGCCTC
* * *
92075532 GAGATGTGTCAGTGTAAGACCATTTCTGGGACATGGCATCGCA-TG-TAT
1 GAGA-GTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGCACAGATAT
92075580 -AGAGGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATAT
1 GAGA-GTGTTAGTGTAAGACCATGTCTGGGACATGGCATC-GCACAGATAT
* * *
92075630 GTGAGAGATAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGAGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCG
92075670 GCCTCAATTT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
47 36 0.46
48 3 0.04
49 2 0.03
50 36 0.46
51 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (49 bp):
GAGAGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGCACAGATAT
Found at i:92075654 original size:50 final size:48
Alignment explanation
Indices: 92075542--92075671 Score: 174
Period size: 50 Copynumber: 2.7 Consensus size: 48
92075532 GAGATGTGTC
* * * *
92075542 AGTGTAAGACCATTTCTGGGACATGGCATC-GCATGTATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAGTATAGAGGAGAT
*
92075589 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAG-ATATGTGAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-AGTATA-GAG-GAGAT
92075639 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
92075672 CTCAATTTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
47 29 0.39
48 6 0.08
49 3 0.04
50 36 0.49
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAGTATAGAGGAGAT
Found at i:92076930 original size:20 final size:21
Alignment explanation
Indices: 92076891--92076930 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
92076881 GTCAAAGTGG
92076891 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
92076912 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
92076931 GTTTCAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:92081473 original size:49 final size:50
Alignment explanation
Indices: 92081409--92081541 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 50
92081399 CTGGTACGCA
* * ** *
92081409 TAGTAGCCTGCACTTAGTACTACACATGCGATC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
* * * *
92081458 TAGTAGCCTCCACTTAGTGCTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
*
92081508 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
92081542 CATAATAGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 28 0.39
50 44 0.61
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCGATACACG
Found at i:92084735 original size:49 final size:49
Alignment explanation
Indices: 92084649--92084894 Score: 287
Period size: 49 Copynumber: 5.0 Consensus size: 49
92084639 GCAGCCGAAG
* *
92084649 CTATCTGGTA-AGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACA-CGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
92084698 TTATCCGGTACATGTAGTAGCCTGCACTTAGTGCTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
92084748 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
92084798 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* *
92084848 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
92084895 TCACAATAGC
Statistics
Matches: 163, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 78 0.48
50 47 0.29
51 38 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:92084885 original size:100 final size:99
Alignment explanation
Indices: 92084663--92084894 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 99
92084653 CTGGTAAGCA
* * * **
92084663 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
92084728 GTGCTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACAATCTGATACACG
* *
92084762 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* *
92084827 TAGTACTACACATGCGACC-AACAATCTGGTACACG
64 TAGTACTACACACGCGACCTAACAATCTGATACACG
92084862 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
92084895 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 48 0.41
101 40 0.34
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCTGATACACG
Found at i:92086841 original size:24 final size:24
Alignment explanation
Indices: 92086805--92086851 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
92086795 CCCTTATCGA
**
92086805 TTATTTTTTATAGAGATCCGAGGT
1 TTATTTTGGATAGAGATCCGAGGT
92086829 TTATTTTGGATAGAGATCCGAGG
1 TTATTTTGGATAGAGATCCGAGG
92086852 ATTACCTCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (24 bp):
TTATTTTGGATAGAGATCCGAGGT
Found at i:92089179 original size:47 final size:49
Alignment explanation
Indices: 92088983--92089207 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 49
92088973 CGAGATGTGT
* * * *
92088983 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACA-CGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGA-ATCGTATGGATGAGC
* * *
92089031 CAGTGTAAGGCCATGTCTGGGACATGGCATCGGCA-CGGGTATGTGA-GAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGAATC--GTATG-GATGAGC
* * * * ** * **
92089081 TAGTGTATGACTATGTCTAGG-CATGGCATCAGCCTCGATTTCAAT-AG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGAATCG-TATGGATGAGC
*
92089128 CAGTGTAAGACCATGTCTGGGACATGGCATC-GAATTG-ATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGAATCGTATGGATGAGC
* *
92089175 CAGTGTAAGACCATGTTTTGGACATGGCATCAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAG
92089208 CGTTATACCC
Statistics
Matches: 139, Mismatches: 27, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
45 3 0.02
46 2 0.01
47 49 0.35
48 46 0.33
49 14 0.10
50 23 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGAATCGTATGGATGAGC
Found at i:92093443 original size:58 final size:58
Alignment explanation
Indices: 92093377--92093490 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 58
92093367 GTGGCCTTTA
*
92093377 GGCTTCAGGTTATTGGGTTTTAAGGTTTTGTGTTAGCAGATTGGGTCTAAGGTTATCG
1 GGCTTCAGGTTATTGGGTTTTAAGGTTTTGGGTTAGCAGATTGGGTCTAAGGTTATCG
*
92093435 GGCTTCAGGTTATTGGGTTTTAAGGTTTTGGGTTAGCAGATTGGGTCTAGGGTTAT
1 GGCTTCAGGTTATTGGGTTTTAAGGTTTTGGGTTAGCAGATTGGGTCTAAGGTTAT
92093491 ATATTTGGGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.17, C:0.08, G:0.34, T:0.41
Consensus pattern (58 bp):
GGCTTCAGGTTATTGGGTTTTAAGGTTTTGGGTTAGCAGATTGGGTCTAAGGTTATCG
Found at i:92105610 original size:48 final size:48
Alignment explanation
Indices: 92105370--92105588 Score: 366
Period size: 48 Copynumber: 4.6 Consensus size: 48
92105360 TGCCTCATGT
*
92105370 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAACGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
92105418 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
* * **
92105466 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTTACATAATAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
* *
92105514 CGATGCCATGTCCCAGACATGGTCTTACACTGGTTCACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
*
92105562 CGATGCCATGTCCCATACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
92105589 TACGGGATCA
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGC
Found at i:92108837 original size:2 final size:2
Alignment explanation
Indices: 92108830--92108860 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
92108820 GAGACTAGTC
92108830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92108861 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92108950 original size:15 final size:16
Alignment explanation
Indices: 92108914--92108943 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
92108904 ACATATAATT
92108914 TATTTCATTATATCAA
1 TATTTCATTATATCAA
92108930 TATTTCA-TATATCA
1 TATTTCATTATATCA
92108944 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:92110674 original size:38 final size:38
Alignment explanation
Indices: 92110616--92110709 Score: 145
Period size: 38 Copynumber: 2.4 Consensus size: 38
92110606 TCAAACATGT
* *
92110616 ACTGGGCC-ACAGCCCTTTTCATATTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCAAATTTCATATTACATAAC
92110655 ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
1 ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
92110693 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
92110710 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
38 41 0.79
39 10 0.19
40 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCAAATTTCATATTACATAAC
Found at i:92110949 original size:24 final size:24
Alignment explanation
Indices: 92110902--92111113 Score: 328
Period size: 23 Copynumber: 9.0 Consensus size: 24
92110892 GCTTTATCAT
*
92110902 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
92110927 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
92110951 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
92110974 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
92110997 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
92111020 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
92111044 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
92111067 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
92111091 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
92111114 TCACTTCCTC
Statistics
Matches: 179, Mismatches: 3, Indels: 11
0.93 0.02 0.06
Matches are distributed among these distances:
23 91 0.51
24 74 0.41
25 14 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:92110977 original size:47 final size:47
Alignment explanation
Indices: 92110923--92111112 Score: 330
Period size: 47 Copynumber: 4.1 Consensus size: 47
92110913 CCTAGCCTCT
92110923 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
*
92110970 TTTAATAATTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
92111016 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
92111063 TTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
92111110 TTT
1 TTT
92111113 TTCACTTCCT
Statistics
Matches: 137, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
46 45 0.33
47 86 0.63
48 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:92111113 original size:47 final size:47
Alignment explanation
Indices: 92110902--92111113 Score: 322
Period size: 47 Copynumber: 4.5 Consensus size: 47
92110892 GCTTTATCAT
*
92110902 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCC-TTTTA
* *
92110951 ATAACTGGGGCATAAGCCCTTTAATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
*
92110997 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
*
92111044 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
92111091 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
92111114 TCACTTCCTC
Statistics
Matches: 154, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
46 45 0.29
47 83 0.54
48 14 0.09
49 12 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:92111187 original size:9 final size:9
Alignment explanation
Indices: 92111173--92111229 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
92111163 ATCTCGTGTG
92111173 CATATCATA
1 CATATCATA
*
92111182 CATATCATGTG
1 CATATCA--TA
92111193 CATATCATA
1 CATATCATA
* *
92111202 CATGTCATGTG
1 CATATCA--TA
92111213 CATATCATA
1 CATATCATA
92111222 CATATCAT
1 CATATCAT
92111230 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:92111192 original size:20 final size:20
Alignment explanation
Indices: 92111169--92111231 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
92111159 GAACATCTCG
92111169 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
92111189 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
92111209 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
92111229 TGT
1 TGT
92111232 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:92111314 original size:25 final size:25
Alignment explanation
Indices: 92111268--92111315 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
92111258 ATATATAAAC
* * * *
92111268 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
92111293 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
92111316 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:92112541 original size:27 final size:27
Alignment explanation
Indices: 92112479--92112556 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
92112469 GGGCATATTC
92112479 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
92112506 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
92112533 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
92112557 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:92112627 original size:27 final size:27
Alignment explanation
Indices: 92112574--92112799 Score: 152
Period size: 27 Copynumber: 8.3 Consensus size: 27
92112564 TTTCATCCTA
* * * *
92112574 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
**
92112601 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
92112628 CAATGGTATTTTTA-TAATTTTTAGAAAGT
1 CAAGGGTA-TTTTAGTAA-TTTTACAAA-C
** ** *
92112657 CAAGGGTATTTCT-GTAACGTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAC
* * *
92112684 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** *
92112711 TGAGGGTA-TTTAGGTAATTTCACAAAC
1 CAAGGGTATTTTA-GTAATTTTACAAAC
*
92112738 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * *
92112765 TAGGGGTATTTTAGTAATTTTGCAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
92112792 CGAGGGTA
1 CAAGGGTA
92112800 AAACAGTAAT
Statistics
Matches: 153, Mismatches: 38, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
26 4 0.03
27 115 0.75
28 23 0.15
29 11 0.07
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:92112798 original size:54 final size:54
Alignment explanation
Indices: 92112574--92112799 Score: 204
Period size: 54 Copynumber: 4.1 Consensus size: 54
92112564 TTTCATCCTA
* * * * *
92112574 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGCAAAC
* ** * * ** * *
92112628 CAATGGTATTTTTATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACGTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAACT-AAGGGTATTT-TAGTAATTTTGCAAAC
* * * **
92112684 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTTAGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTA-GTAATTTTGCAAAC
* *
92112738 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGCAAAC
*
92112792 CGAGGGTA
1 CAAGGGTA
92112800 AAACAGTAAT
Statistics
Matches: 133, Mismatches: 33, Indels: 12
0.75 0.19 0.07
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 76 0.57
55 19 0.14
56 34 0.26
57 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGCAAAC
Found at i:92112807 original size:27 final size:27
Alignment explanation
Indices: 92112777--92112988 Score: 216
Period size: 27 Copynumber: 7.9 Consensus size: 27
92112767 GGGGTATTTT
* *
92112777 AGTAATTTTGCAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
92112804 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
92112831 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
92112858 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
92112885 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
92112912 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* *
92112939 -GATAATTATGTAAAT-TAGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* *
92112966 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
92112989 TTTTGGTAAT
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 160 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:92112918 original size:81 final size:81
Alignment explanation
Indices: 92112779--92112988 Score: 239
Period size: 81 Copynumber: 2.6 Consensus size: 81
92112769 GGTATTTTAG
* * * * * * *
92112779 TAATTTTGCAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTATATAA
92112844 ATCAAGGGTAAAATAG-
66 ATCAAGGGTAAAA-AGA
* *
92112860 TAATTCA-GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGA-TAATTATGT
1 TAATT-ATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-GAGTAATTATAT
* *
92112923 AAATCAGGGGTAAAACGA
64 AAATCAAGGGTAAAAAGA
* *
92112941 TAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAATCGGGGGTA
1 TAATTATGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTA
92112989 TTTTGGTAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
80 3 0.03
81 106 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTATATAA
ATCAAGGGTAAAAAGA
Found at i:92113015 original size:27 final size:26
Alignment explanation
Indices: 92112985--92113083 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
92112975 GTAAATCGGG
*
92112985 GGTATTTTGGTAATTTTACAAGTCGAA
1 GGTATTTCGGTAATTTTACAA-TCGAA
* *
92113012 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTAC-AATCGAA
* * * *
92113039 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCGGTAATTTTACAATCGAA
*
92113065 GGGTATTTTGGTAATTTTA
1 -GGTATTTCGGTAATTTTA
92113084 GTAAACTAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 4 0.07
27 52 0.90
28 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAATCGAA
Found at i:92113070 original size:54 final size:54
Alignment explanation
Indices: 92112977--92113083 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
92112967 GTAATTCTGT
* ** *
92112977 AAATCGGGGGTATTTTGGTAATTTTACAAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
* * * *
92113031 AAATCGAGGGTATTTCAGTATTTTTACAA-ACTAAGGGTATTTTGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAGACGAA-GGTATTTCGGTAAATTTA
92113084 GTAAACTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 3 0.07
54 41 0.93
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
Found at i:92123802 original size:35 final size:37
Alignment explanation
Indices: 92123731--92123828 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
92123721 ATAATCTTCA
92123731 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
92123769 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
92123804 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
92123829 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:92123828 original size:17 final size:19
Alignment explanation
Indices: 92123731--92123821 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
92123721 ATAATCTTCA
92123731 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92123750 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92123769 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92123786 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92123804 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92123822 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92123847 original size:22 final size:22
Alignment explanation
Indices: 92123731--92123844 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
92123721 ATAATCTTCA
92123731 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92123750 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92123769 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92123786 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92123804 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
92123826 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
92123845 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:92136253 original size:78 final size:78
Alignment explanation
Indices: 92136141--92136669 Score: 767
Period size: 78 Copynumber: 6.8 Consensus size: 78
92136131 CGAAGAAACA
** * * * * *
92136141 GATTTGGCATCTCCATATTCGACGGAGAGTAGATCGAAGACGTAGCAGATCT-GACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
* *
92136205 ATCGGATCCAAGAT
65 AGCAGATCCAAGAT
* * ** *
92136219 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGTAGATCT-AACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
92136283 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
92136297 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
92136362 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
92136375 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
92136440 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
92136453 AATTTGGCATCTCTATATTAGACAGGGAGTAGATCAAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
92136518 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
92136531 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCGAAGACATAATAGATTGGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
92136596 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
92136609 GATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGACATAGCAGATCT-GACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCAT
92136670 GTGTTTACAT
Statistics
Matches: 409, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
77 1 0.00
78 407 1.00
79 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:92136274 original size:298 final size:298
Alignment explanation
Indices: 92135738--92136277 Score: 879
Period size: 298 Copynumber: 1.8 Consensus size: 298
92135728 ATTCGACGGA
* *
92135738 GAGCAGATCGAAGACATAGCAGATTTGGCTTTAACGTGTTTATGCTGAAACAGATCTAAGATGAT
1 GAGCAGATCAAAGACATAGCAGATTTAGCTTTAACGTGTTTATGCTGAAACAGATCTAAGATGAT
*
92135803 TTAACATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGACATCTTCATATTCGACGG
66 TTAACATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGACATCTCCATATTCGACGG
* * *
92135868 AGAGAAGATCAAAGACATTATAGATTGGACCTTCATTGAAGGAGATCCAAGATGATTTGGCATCT
131 AGAGAAGATCAAAGACAGTACAGATTGGACCTTCATTGAACGAGATCCAAGATGATTTGGCATCT
* *
92135933 CTGTATTAGACGGGGAACAAATCGAAGACATAGTAGATCTAACCTTCGGATGTTTTCACATCGAA
196 CTGTATTAGACGGGGAACAAATCAAAGACACAGTAGATCTAACCTTCGGATGTTTTCACATCGAA
92135998 GTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAG
261 GTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAG
* **
92136036 GAGCAGATCAAAGACATAGCAGATTTAGCTTTCACGTGTTTATGCTGAAGTAGATCTAAGATGAT
1 GAGCAGATCAAAGACATAGCAGATTTAGCTTTAACGTGTTTATGCTGAAACAGATCTAAGATGAT
* *
92136101 TTAACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTAACATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGACATCTCCATATTCGACGG
* *
92136166 AGAGTAGATCGAAGAC-GTAGCAGATCT-GACCTTCATTGAATCG-GATCCAAGATGATTTGGCA
131 AGAGAAGATCAAAGACAGTA-CAGAT-TGGACCTTCATTGAA-CGAGATCCAAGATGATTTGGCA
* *
92136228 TCTCTGTATTAGACGGGGAGCAGATCAAAGACACAGTAGATCTAACCTTC
193 TCTCTGTATTAGACGGGGAACAAATCAAAGACACAGTAGATCTAACCTTC
92136278 ATTGAAGCAG
Statistics
Matches: 222, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
297 2 0.01
298 218 0.98
299 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (298 bp):
GAGCAGATCAAAGACATAGCAGATTTAGCTTTAACGTGTTTATGCTGAAACAGATCTAAGATGAT
TTAACATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGACATCTCCATATTCGACGG
AGAGAAGATCAAAGACAGTACAGATTGGACCTTCATTGAACGAGATCCAAGATGATTTGGCATCT
CTGTATTAGACGGGGAACAAATCAAAGACACAGTAGATCTAACCTTCGGATGTTTTCACATCGAA
GTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAG
Found at i:92136764 original size:45 final size:45
Alignment explanation
Indices: 92136686--92136965 Score: 375
Period size: 45 Copynumber: 6.3 Consensus size: 45
92136676 ACATCGAAGT
* * **
92136686 AGATCCAAGATGACAGATTTGGTATCTCTGTATTAGACGGGGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
* * * * *
92136731 AAATCGGAGATAATAGATTTGGCATATCTGTATTAGACGGGGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
* *
92136776 AGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
*
92136820 AGATCGAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
* * * *
92136865 AGATTGAAGA-AGCAGATTTGGCGTCTCTGTTTTAGACGGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
* *
92136909 AAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGATGGGGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
*
92136954 AGATCAAAGATA
1 AGATCGAAGATA
92136966 GTAGATATCG
Statistics
Matches: 203, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
44 77 0.38
45 126 0.62
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (45 bp):
AGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
Found at i:92136810 original size:89 final size:89
Alignment explanation
Indices: 92136699--92136957 Score: 419
Period size: 89 Copynumber: 2.9 Consensus size: 89
92136689 TCCAAGATGA
** * * * *
92136699 CAGATTTGGTATCTCTGTATTAGACGGGGAGCAAATCGGAGATAATAGATTTGGCATATCTGTAT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAT
92136764 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* *
92136788 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAT
92136853 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* *
92136877 CAGATTTGGCGTCTCTGTTTTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAT
*
92136942 TAGATGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
92136958 CAAAGATAGT
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 157 1.00
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (89 bp):
CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAT
TAGACGGGGAGCAGATTGAAGAAG
Found at i:92136852 original size:134 final size:134
Alignment explanation
Indices: 92136686--92136965 Score: 391
Period size: 134 Copynumber: 2.1 Consensus size: 134
92136676 ACATCGAAGT
* * * *
92136686 AGATCCAAGATGACAGATTTGGTATCTCTGTATTAGACGGGGAGCAAATCGGAGATAATAGATTT
1 AGATCAAAGATAACAGATTTGGTATCTCTGTATTAGACGGGGAGCAAATCGAAGA-AACAGATTT
* * * *
92136751 GGCATATCTGTATTAGACGGGGAGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGG
65 GGCATATCTGTATTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGG
92136815 GGAGC
130 GGAGC
* * * * *
92136820 AGATCGAAGATAACAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATTGAAGAAGCAGATTTG
1 AGATCAAAGATAACAGATTTGGTATCTCTGTATTAGACGGGGAGCAAATCGAAGAAACAGATTTG
* * * *
92136885 GCGTCTCTGTTTTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGATGGG
66 GCATATCTGTATTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGG
92136950 GAGC
131 GAGC
92136954 AGATCAAAGATA
1 AGATCAAAGATA
92136966 GTAGATATCG
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
133 36 0.28
134 92 0.72
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (134 bp):
AGATCAAAGATAACAGATTTGGTATCTCTGTATTAGACGGGGAGCAAATCGAAGAAACAGATTTG
GCATATCTGTATTAGACGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGG
GAGC
Found at i:92137331 original size:17 final size:19
Alignment explanation
Indices: 92137309--92137386 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
92137299 ATGGAAATAT
92137309 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
92137326 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
92137345 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
92137362 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
92137380 AATCTTA
1 AATCTTA
92137387 GAAGATATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
17 22 0.39
18 9 0.16
19 25 0.45
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:92137341 original size:19 final size:19
Alignment explanation
Indices: 92137317--92137388 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
92137307 ATAATCTTCA
92137317 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92137336 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92137355 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92137372 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92137389 AGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.31
18 10 0.20
19 25 0.49
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92137624 original size:20 final size:20
Alignment explanation
Indices: 92137587--92137624 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92137577 TCCCTCTTAC
*
92137587 GTTCTTATTTTCTACTTTTT
1 GTTCTTATTTTATACTTTTT
*
92137607 GTTCTTATTTTATTCTTT
1 GTTCTTATTTTATACTTT
92137625 GTTCATCTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.13, G:0.05, T:0.71
Consensus pattern (20 bp):
GTTCTTATTTTATACTTTTT
Found at i:92139759 original size:7 final size:7
Alignment explanation
Indices: 92139747--92139829 Score: 166
Period size: 7 Copynumber: 11.9 Consensus size: 7
92139737 TAAAATAAAT
92139747 TCTTGAA
1 TCTTGAA
92139754 TCTTGAA
1 TCTTGAA
92139761 TCTTGAA
1 TCTTGAA
92139768 TCTTGAA
1 TCTTGAA
92139775 TCTTGAA
1 TCTTGAA
92139782 TCTTGAA
1 TCTTGAA
92139789 TCTTGAA
1 TCTTGAA
92139796 TCTTGAA
1 TCTTGAA
92139803 TCTTGAA
1 TCTTGAA
92139810 TCTTGAA
1 TCTTGAA
92139817 TCTTGAA
1 TCTTGAA
92139824 TCTTGA
1 TCTTGA
92139830 GAAATTTCAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 76 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.43
Consensus pattern (7 bp):
TCTTGAA
Found at i:92142749 original size:2 final size:2
Alignment explanation
Indices: 92142742--92142770 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92142732 TTTAATTGTG
92142742 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92142771 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92144199 original size:24 final size:24
Alignment explanation
Indices: 92144171--92144230 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
92144161 AAAAATAATC
92144171 TTTCAATTAAACTTTGTTTACTTG
1 TTTCAATTAAACTTTGTTTACTTG
92144195 TTTCAATTAAACTTTGTTTACTTG
1 TTTCAATTAAACTTTGTTTACTTG
*
92144219 TTTCAATCAAAC
1 TTTCAATTAAAC
92144231 ACTGATTAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (24 bp):
TTTCAATTAAACTTTGTTTACTTG
Found at i:92153279 original size:30 final size:30
Alignment explanation
Indices: 92153223--92153280 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
92153213 TACGAGCCTT
*
92153223 GGGGCAAAAGTGTAAATATGTGAAAGTTTA
1 GGGGCAAAAGTGTAAATATGTCAAAGTTTA
* *
92153253 GGGGCAAAA-TAGTAATTTTGTCAAAGTT
1 GGGGCAAAAGT-GTAAATATGTCAAAGTT
92153281 CGTACTAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.38, C:0.05, G:0.28, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGTCAAAGTTTA
Done.