Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 306 of 345
Found at i:92153776 original size:47 final size:47
Alignment explanation
Indices: 92153707--92153823 Score: 225
Period size: 47 Copynumber: 2.5 Consensus size: 47
92153697 GAGTTCCGAA
92153707 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATTCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATTCGAG
*
92153754 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATTCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATTCGAG
92153801 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
92153824 ACTTATGGAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAACTAGGCATTCGAG
Found at i:92156358 original size:100 final size:100
Alignment explanation
Indices: 92156235--92156492 Score: 246
Period size: 100 Copynumber: 2.6 Consensus size: 100
92156225 ATCTTTATGA
* * * * * * *
92156235 AGATGAGATTTGTTATTGTAGTTTCAATCCAATCCACTGCATCTTCAGGGATACGGGATTTCAAT
1 AGATGAGATTTGCTACTGAAGTTTTAATCCAATCCACTACATCTTCAGGGATACAGGATTTCAAC
* * * * * * * *
92156300 TTGTAGCTTCATTTTGCCCCACTGCATCTTCGTTG
66 TTATAACTTCATCTAGCCCCACTACATCTACATAG
* ** * * * * *
92156335 AGATGAGATCTGCTACTGAAGTTTTAATCTGATCCATTAAATCTTCAGGGATATAGGATTTGAGC
1 AGATGAGATTTGCTACTGAAGTTTTAATCCAATCCACTACATCTTCAGGGATACAGGATTTCAAC
92156400 TTATAACTTCATCTAGCCCCACTACATCTACATAG
66 TTATAACTTCATCTAGCCCCACTACATCTACATAG
* * * * * * *
92156435 ACATGAGATTTGCTACTGCAGTTTTGATCCATTCCACTACAACTCCAGGGATATAGGA
1 AGATGAGATTTGCTACTGAAGTTTTAATCCAATCCACTACATCTTCAGGGATACAGGA
92156493 GTCATTGTTT
Statistics
Matches: 124, Mismatches: 34, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
100 124 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (100 bp):
AGATGAGATTTGCTACTGAAGTTTTAATCCAATCCACTACATCTTCAGGGATACAGGATTTCAAC
TTATAACTTCATCTAGCCCCACTACATCTACATAG
Found at i:92160409 original size:18 final size:18
Alignment explanation
Indices: 92160386--92160441 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
92160376 CCGCCACCAA
92160386 CTCCACTAGCCACAATTG
1 CTCCACTAGCCACAATTG
*
92160404 CTCCACCA--C-CAA---
1 CTCCACTAGCCACAATTG
*
92160416 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACAATTG
92160434 CTCCACTA
1 CTCCACTA
92160442 CCTACTCCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 7 0.24
14 1 0.03
15 5 0.17
16 1 0.03
18 15 0.52
ACGTcount: A:0.27, C:0.46, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACAATTG
Found at i:92160414 original size:30 final size:30
Alignment explanation
Indices: 92160379--92160474 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
92160369 GCCTTTGCCG
*
92160379 CCACCAACTCCACTAGCCACAATTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
92160409 CCACCAACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
* *
92160439 CTACCTACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
92160469 CCACCA
1 CCACCA
92160475 CTTGTACCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCAACTCCACTAGCCACACTTGCTCCA
Found at i:92160469 original size:18 final size:18
Alignment explanation
Indices: 92160416--92160469 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
92160406 CCACCACCAA
92160416 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
92160434 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
92160446 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
92160464 CTCCAC
1 CTCCAC
92160470 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:92161006 original size:24 final size:23
Alignment explanation
Indices: 92160958--92161009 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
92160948 TTTTTTTTGT
*
92160958 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
92160981 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
92161005 TATTA
1 TATTA
92161010 GGTATTTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:92161017 original size:46 final size:45
Alignment explanation
Indices: 92160966--92161104 Score: 118
Period size: 48 Copynumber: 2.9 Consensus size: 45
92160956 GTTATTATTA
*
92160966 TATTTCTTAATATTATATTATATATATATTCTTTTAATATATTAGG
1 TATTTCTTAATATTATATTATATATATATT-TTATAATATATTAGG
* * * *
92161012 TATTTCTAAAT-TCTATATTACATATATATATTTTATACTATTTTATG
1 TATTTCTTAATAT-TATATT--ATATATATATTTTATAATATATTAGG
* * *
92161059 TATATATCTGTAATACTATATTATTTATATATATATATATATATAT
1 TAT-T-TCT-TAATATTATATTATATATATAT-TTTATA-ATATAT
92161105 ATTTACATGT
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
45 1 0.01
46 16 0.22
47 14 0.19
48 21 0.29
49 8 0.11
50 13 0.18
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (45 bp):
TATTTCTTAATATTATATTATATATATATTTTATAATATATTAGG
Found at i:92161103 original size:25 final size:25
Alignment explanation
Indices: 92161024--92161109 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
92161014 TTTCTAAATT
** *
92161024 CTATATTACATATATATATTTTATA
1 CTATATTATTTATATATATTATATA
* * *
92161049 CTATTTTATGTATATATCTGTA-ATA
1 CTATATTATTTATATATAT-TATATA
92161074 CTATATTATTTATATATA-TATATA
1 CTATATTATTTATATATATTATATA
92161098 -TATATATATTTA
1 CTATAT-TATTTA
92161110 CATGTTATCT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
23 7 0.14
24 9 0.18
25 33 0.66
26 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.53
Consensus pattern (25 bp):
CTATATTATTTATATATATTATATA
Found at i:92161139 original size:22 final size:22
Alignment explanation
Indices: 92161114--92161221 Score: 80
Period size: 22 Copynumber: 4.9 Consensus size: 22
92161104 TATTTACATG
*
92161114 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
92161136 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
92161161 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* *
92161184 -TATTATCATGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
92161204 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
92161222 ATGTAGTATT
Statistics
Matches: 69, Mismatches: 11, Indels: 15
0.73 0.12 0.16
Matches are distributed among these distances:
19 10 0.14
20 2 0.03
21 2 0.03
22 17 0.25
23 13 0.19
24 13 0.19
25 12 0.17
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:92161170 original size:25 final size:23
Alignment explanation
Indices: 92161120--92161211 Score: 80
Period size: 24 Copynumber: 3.8 Consensus size: 23
92161110 CATGTTATCT
92161120 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAA-TATATTATG
92161146 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-A-TATATTATG
** *
92161171 TACATA-TTTTTAATATTATCATG
1 TATGTATTTTTTAATA-TATTATG
*
92161194 TATTTATTTTTT-ATATAT
1 TATGTATTTTTTAATATAT
92161212 GTACATATTT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.09
23 14 0.25
24 16 0.28
25 15 0.26
26 7 0.12
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (23 bp):
TATGTATTTTTTAATATATTATG
Found at i:92161220 original size:19 final size:20
Alignment explanation
Indices: 92161162--92161221 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 20
92161152 TTTTTTACAC
92161162 TATAT-TATGTACATATTTT
1 TATATATATGTACATATTTT
**
92161181 TAATATTATCATGTATTTATTTT
1 T-ATA-TAT-ATGTACATATTTT
92161204 T-TATATATGTACATATTT
1 TATATATATGTACATATTT
92161222 ATGTAGTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 11 0.33
20 6 0.18
21 3 0.09
22 1 0.03
23 12 0.36
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
TATATATATGTACATATTTT
Found at i:92161362 original size:16 final size:15
Alignment explanation
Indices: 92161338--92161372 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
92161328 TAATTATTAT
92161338 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
92161354 TATTTTAATATTTTA
1 TATTCTAATATTTTA
92161369 TATT
1 TATT
92161373 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:92171038 original size:46 final size:46
Alignment explanation
Indices: 92170982--92171149 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
92170972 TGGTTGAGCA
*
92170982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAACG
* ** * * * *
92171028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGCTA-ACG
* * *
92171075 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAACG
* * *
92171121 CCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
92171150 GCTTATGGGC
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 65 0.66
47 34 0.34
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAACG
Found at i:92171138 original size:93 final size:93
Alignment explanation
Indices: 92170979--92171150 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
92170969 GGATGGTTGA
* * * * *
92170979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCTAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
92171044 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
92171072 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
92171137 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
92171151 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:92174287 original size:72 final size:72
Alignment explanation
Indices: 92174167--92174333 Score: 226
Period size: 72 Copynumber: 2.3 Consensus size: 72
92174157 ATTTCCGTTT
* *
92174167 TTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACAC
1 TTTCAATTTATGCTTTTC---AAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACAC
*
92174232 GCTGAGGTAA
63 GCCGAGGTAA
* *
92174242 TTTCAATTTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCC
1 TTTCAATTTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCC
*
92174307 GAGGTAT
66 GAGGTAA
* * *
92174314 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
92174334 TTTCTGCTTT
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
72 65 0.78
75 18 0.22
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTCAATTTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCC
GAGGTAA
Found at i:92174335 original size:14 final size:13
Alignment explanation
Indices: 92174313--92174357 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
92174303 CGCCGAGGTA
92174313 TTTTTAATTTCTG
1 TTTTTAATTTCTG
92174326 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
92174340 CTTTTAATTTCTA
1 TTTTTAATTTCTG
92174353 TTTTT
1 TTTTT
92174358 TAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:92174348 original size:13 final size:13
Alignment explanation
Indices: 92174314--92174351 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
92174304 GCCGAGGTAT
*
92174314 TTTTAATTTCTGT
1 TTTTAATTTCTGC
92174327 TTTTCAATTTCTGC
1 TTTT-AATTTCTGC
92174341 TTTTAATTTCT
1 TTTTAATTTCT
92174352 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.16, C:0.13, G:0.05, T:0.66
Consensus pattern (13 bp):
TTTTAATTTCTGC
Found at i:92174358 original size:14 final size:13
Alignment explanation
Indices: 92174313--92174360 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
92174303 CGCCGAGGTA
92174313 TTTTTAATTTCTGT
1 TTTTTAATTTCT-T
* *
92174327 TTTTCAATTTCTG
1 TTTTTAATTTCTT
*
92174340 CTTTTAATTTCTAT
1 TTTTTAATTTCT-T
92174354 TTTTTAA
1 TTTTTAA
92174361 AAATCAACTC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.19, C:0.10, G:0.04, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTT
Found at i:92174432 original size:14 final size:14
Alignment explanation
Indices: 92174413--92174439 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92174403 CGCTGAGGTA
92174413 TTTTCAATTTTTGT
1 TTTTCAATTTTTGT
92174427 TTTTCAATTTTTG
1 TTTTCAATTTTTG
92174440 CCTTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTCAATTTTTGT
Found at i:92174496 original size:99 final size:98
Alignment explanation
Indices: 92174252--92174528 Score: 349
Period size: 100 Copynumber: 2.8 Consensus size: 98
92174242 TTTCAATTTA
* * *
92174252 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTT
1 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
* ** *
92174317 TAATTTCTGTTTTTCAATTTCTGCTTTTAATTTC
65 CAATTTCTGTTTTTCAATTTCTGCTTACAAATTC
** * *
92174351 TATTTTTTAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
1 T-GCTTTT-CAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* *
92174416 TCAATTTTTGTTTTTCAATTTTTGCCTTACAAATTC
64 TCAATTTCTGTTTTTCAATTTCTG-CTTACAAATTC
* * * *
92174452 TGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTAAGATATTTTC
1 TGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
*
92174517 AA-TTCTATTTTT
66 AATTTCTGTTTTT
92174529 ATCAAAAAAA
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
98 8 0.05
99 55 0.36
100 80 0.53
101 9 0.06
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (98 bp):
TGCTTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
AATTTCTGTTTTTCAATTTCTGCTTACAAATTC
Found at i:92174648 original size:75 final size:73
Alignment explanation
Indices: 92174460--92174684 Score: 297
Period size: 76 Copynumber: 3.0 Consensus size: 73
92174450 TCTGCTTTTC
* * * *
92174460 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTAAGATATTTTCAATTCTAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGTTGAGGTATTTTCAATTCT-G
92174525 TTTTATCAAAA
65 TTTT-T-AAAA
92174536 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGTTGAGGTATTTTCAA-TTCTG
92174601 CTTTTTAAAA
65 -TTTTTAAAA
* * * **
92174611 GAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGTTGAGGTATTTTC-AATTC
92174676 TGTTTTTAA
63 TGTTTTTAA
92174685 TTTCTTTTTT
Statistics
Matches: 135, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
75 41 0.30
76 64 0.47
77 28 0.21
78 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGTTGAGGTATTTTCAATTCTGT
TTTTAAAA
Found at i:92174899 original size:71 final size:71
Alignment explanation
Indices: 92174799--92174936 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
92174789 CTGTTTTAAT
* *
92174799 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
92174864 TTATCA
66 TTATCA
* * *
92174870 TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
92174935 TT
66 TT
92174937 CTGCTCAATT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:92175039 original size:155 final size:155
Alignment explanation
Indices: 92174708--92175458 Score: 672
Period size: 151 Copynumber: 4.8 Consensus size: 155
92174698 AATTTATGTG
* * *
92174708 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
* * * *
92174771 CATTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
66 AATTTC--TGTTCAATTTATG--TT--TTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** *
92174836 CCTCAAGTCACATTGAGGTATTTTCAA-TT-TA-T
124 CCTC-A--CACGCTGAGGTGTTTTCAATTTCTATT
** * * *
92174868 CATC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
*
92174932 AATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAC
66 AATTTCTGTTCAATTTATG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAC
*
92174997 ATGCTGAGGTGTTTTCAATTTCTATT
130 ACGCTGAGGTGTTTTCAATTTCTATT
* **
92175023 TTTC-AAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGGC-TTACACGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAAGACACGCTGAGGTA-T
***
92175086 TTTCAATTTCTG------TT-TG-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
62 TTTCAATTTCTGTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-
* *
92175143 CGGGTCACACGCTGAGGTGTTTTCAACTTCTGTT
125 C---TCACACGCTGAGGTGTTTTCAATTTCTATT
* * * *
92175177 TTTCAAAAAAATCAACTCATGTTGGGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAGTTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTT
* *
92175242 -AATTTCTGTTC-A-TCA-------AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG
65 CAATTTCTGTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-C--
* *
92175297 GTCACACGCTGAGGTGTTTTCAATTTATGTT
126 -TCACACGCTGAGGTGTTTTCAATTTCTATT
* * *
92175328 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGGCACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
* * * * **
92175393 AATTAATGATTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCT
66 AATT--T-CTGTTCAATTTATG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
92175458 C
127 C
92175459 GGGTCACATA
Statistics
Matches: 503, Mismatches: 53, Indels: 71
0.80 0.08 0.11
Matches are distributed among these distances:
149 35 0.07
150 5 0.01
151 130 0.26
152 26 0.05
153 19 0.04
154 39 0.08
155 112 0.22
156 7 0.01
157 11 0.02
158 17 0.03
159 51 0.10
160 2 0.00
161 18 0.04
162 1 0.00
163 1 0.00
164 29 0.06
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (155 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AATTTCTGTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACA
CGCTGAGGTGTTTTCAATTTCTATT
Found at i:92175168 original size:77 final size:76
Alignment explanation
Indices: 92174941--92175396 Score: 594
Period size: 77 Copynumber: 6.1 Consensus size: 76
92174931 CAATTTCTGC
* *
92174941 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-C---TCACATG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
92175000 CTGAGGTGTTT
66 CTGAGGTGTTT
* * * * *
92175011 TCAATTTCTATTTTTCAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
*
92175076 CTGAGGTATTTT
66 CTGAGGT-GTTT
*
92175088 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
92175153 GCTGAGGTGTTT
65 GCTGAGGTGTTT
* * * *
92175165 TCAACTTCTGTTTTTCAAAAAAATCAACTCATGTTGGGAGAGGTGAGTTGAGCCTCAGG--ACAC
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
*
92175228 GTTGAGGTAGTTT
65 GCTGAGGT-GTTT
** *
92175241 T-AATTTCTGTTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
92175305 CTGAGGTGTTT
66 CTGAGGTGTTT
* *
92175316 TCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGG---CA
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACA
*
92175378 CGCTGAGGTATTT
64 CGCTGAGGTGTTT
92175391 TCAATT
1 TCAATT
92175397 AATGATTTTC
Statistics
Matches: 338, Mismatches: 34, Indels: 23
0.86 0.09 0.06
Matches are distributed among these distances:
70 14 0.04
71 33 0.10
72 1 0.00
74 38 0.11
75 47 0.14
76 39 0.12
77 111 0.33
78 55 0.16
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (76 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
CTGAGGTGTTT
Found at i:92175286 original size:229 final size:221
Alignment explanation
Indices: 92174949--92175394 Score: 635
Period size: 229 Copynumber: 2.0 Consensus size: 221
92174939 GCTCAATTTA
*
92174949 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGGTGTTTTCA
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACACGCTGAGGTGTTTTCA
** * * * *
92175014 ATTTCTATTTTTCAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGGCTTACACGCTG
66 ATTTCTATTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACACGCTG
* *
92175079 AGGTATTTTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
131 AGGT-GTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
92175144 -GGGTCACACGCTGAGGTGTTTTCAACTTC
195 AGGG---CACGCTGAGGTATTTTCAACTTC
* * *
92175173 TGTTTTTCAAAAAAATCAACTCATGTTGGGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAG
1 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACACGCTGAGGT-G
* *
92175238 TTTT-AATTTCTGTTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCAC
60 TTTTCAATTTCTATTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCAC
*
92175302 ACGCTGAGGTGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
125 ACGCTGAGGTGTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
92175367 GTCTCAGGGCACGCTGAGGTATTTTCAA
190 GCCTCAGGGCACGCTGAGGTATTTTCAA
92175395 TTAATGATTT
Statistics
Matches: 198, Mismatches: 17, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
224 8 0.04
226 54 0.27
228 56 0.28
229 75 0.38
230 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (221 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACACGCTGAGGTGTTTTCA
ATTTCTATTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACACGCTG
AGGTGTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGGCACGCTGAGGTATTTTCAACTTC
Found at i:92175406 original size:14 final size:14
Alignment explanation
Indices: 92175387--92175422 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
92175377 ACGCTGAGGT
92175387 ATTTTCAATTAATG
1 ATTTTCAATTAATG
*
92175401 ATTTTCAATTTATG
1 ATTTTCAATTAATG
*
92175415 CTTTTCAA
1 ATTTTCAA
92175423 GAATCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.53
Consensus pattern (14 bp):
ATTTTCAATTAATG
Found at i:92175478 original size:89 final size:87
Alignment explanation
Indices: 92175313--92175629 Score: 269
Period size: 87 Copynumber: 3.6 Consensus size: 87
92175303 CGCTGAGGTG
** *
92175313 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGG-C
1 TTTTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGTC
*
92175377 AC-GCTGAGGTATTTTCAATTAATGA
63 ACTTC-GAGGTATTTTCAATTAATGA
* * *
92175402 TTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCAC-
92175467 TATCGAGGTATTTTCAA--AATCTG-
65 T-TCGAGGTATTTTCAATTAA--TGA
* * * *
92175490 TTTTACAAATTT-TG-TTTT-AAAAATCAACTCATTTTGCGAGAAGTGAGTTGAGCCTTGGCTCA
1 TTTT-C-AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCA
* * **
92175552 CGTGCTGAGCTATTTTCAATTTCT-A
64 C-TTC-GAGGTATTTTCAATTAATGA
* * * *
92175577 TTTT-AATGTCTGTTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTCAATTTATGTTTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGC
92175630 TCATGATCAC
Statistics
Matches: 190, Mismatches: 23, Indels: 32
0.78 0.09 0.13
Matches are distributed among these distances:
84 4 0.02
85 2 0.01
86 11 0.06
87 123 0.65
88 8 0.04
89 36 0.19
90 6 0.03
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (87 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACT
TCGAGGTATTTTCAATTAATGA
Found at i:92176323 original size:30 final size:30
Alignment explanation
Indices: 92176288--92176383 Score: 156
Period size: 30 Copynumber: 3.2 Consensus size: 30
92176278 GCCTTTGCCG
*
92176288 CCACCAACTCCACTAGCCACAATTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
*
92176318 CCACCAACTCCACTAGCTACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
* *
92176348 CTACCTACTCCACTAGCCACACTTGCTCCA
1 CCACCAACTCCACTAGCCACACTTGCTCCA
92176378 CCACCA
1 CCACCA
92176384 CTTGTACCTA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCAACTCCACTAGCCACACTTGCTCCA
Found at i:92176903 original size:23 final size:23
Alignment explanation
Indices: 92176866--92176993 Score: 93
Period size: 23 Copynumber: 5.5 Consensus size: 23
92176856 CTTTTTTTGT
*
92176866 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
92176889 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
92176911 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
92176934 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
92176957 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
92176982 TATTATATATAT
1 TATTATATATAT
92176994 ATATATATAT
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:92176948 original size:2 final size:2
Alignment explanation
Indices: 92176941--92177013 Score: 64
Period size: 2 Copynumber: 37.5 Consensus size: 2
92176931 CTATATTACG
* * * *
92176941 TA TA TA TA T- TA TA CTA T- TT TA TG TA TA TA TC TT TA -A TA CTA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
92176982 TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92177014 TACATGTTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
1 4 0.07
2 51 0.86
3 4 0.07
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (2 bp):
TA
Found at i:92176969 original size:25 final size:25
Alignment explanation
Indices: 92176941--92177013 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
92176931 CTATATTACG
* *
92176941 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATATA
*
92176966 TATATCT-TTAATACTATATTATATA
1 TATATATATT-ATACTATATTATATA
92176991 TATATATA-TATA-TATA-TATATA
1 TATATATATTATACTATATTATATA
92177013 T
1 T
92177014 TACATGTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 7 0.17
23 4 0.10
24 5 0.12
25 26 0.62
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (25 bp):
TATATATATTATACTATATTATATA
Found at i:92177050 original size:22 final size:23
Alignment explanation
Indices: 92176995--92177086 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 23
92176985 TATATATATA
* *
92176995 TATATATATATATATATATTACATGT
1 TATAT-TATGTATATATTTTACA--T
*
92177021 TATCTTATGTATATATTTTA-AT
1 TATATTATGTATATATTTTACAT
* *
92177043 TATATTATGTATGTATTTTTTACAC
1 TATATTATGTA--TATATTTTACAT
*
92177068 TATATTATGTACATATTTT
1 TATATTATGTATATATTTT
92177087 TAATATTATC
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
22 11 0.20
23 6 0.11
24 9 0.16
25 25 0.45
26 4 0.07
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (23 bp):
TATATTATGTATATATTTTACAT
Found at i:92181227 original size:2 final size:2
Alignment explanation
Indices: 92181220--92181246 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
92181210 TTATCAACTT
92181220 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
92181247 GCAGCAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92185695 original size:36 final size:35
Alignment explanation
Indices: 92185632--92185704 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 35
92185622 ATACGTATTG
* *
92185632 TTATTATTATTAATTTCAAACTTTACATTTTATTAT
1 TTATTATTATTAATTTCAAACTATACATATTA-TAT
* *
92185668 TTATTATATATTATTTTTAAAC-ATACATATTATAT
1 TTATTAT-TATTAATTTCAAACTATACATATTATAT
92185703 TT
1 TT
92185705 TAAATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 5 0.16
36 15 0.47
37 12 0.38
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (35 bp):
TTATTATTATTAATTTCAAACTATACATATTATAT
Found at i:92187960 original size:2 final size:2
Alignment explanation
Indices: 92187953--92187989 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
92187943 AATGTGTCTT
92187953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92187990 TTGTGTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92192390 original size:3 final size:3
Alignment explanation
Indices: 92192382--92192412 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
92192372 GGAACTTGTA
92192382 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
92192413 GTATGGCCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:92196553 original size:56 final size:56
Alignment explanation
Indices: 92196480--92196611 Score: 156
Period size: 56 Copynumber: 2.4 Consensus size: 56
92196470 TCCGTGCCCG
* * * **
92196480 TGTGGGTATACTAACTTGTGACACACGACCAAGCCATACGCCCGTGTGCTAGGCCA
1 TGTGAGTATACTGACTTGTGACACACGACCAAGCCATAAGCCCGTGTGCTAAACCA
* ** * * *
92196536 TGTGAGTATACTGACTTGGGTTACACGGCCAAGCCATAAGCCTGTGTGCTAAACCG
1 TGTGAGTATACTGACTTGTGACACACGACCAAGCCATAAGCCCGTGTGCTAAACCA
*
92196592 TGTGAGCATACTGACTTGTG
1 TGTGAGTATACTGACTTGTG
92196612 CTCTTTAAAA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (56 bp):
TGTGAGTATACTGACTTGTGACACACGACCAAGCCATAAGCCCGTGTGCTAAACCA
Found at i:92197739 original size:25 final size:25
Alignment explanation
Indices: 92197693--92197778 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
92197683 TACATGTATA
92197693 CTCATACGAGCT--ATAACCGGTAAG
1 CTCATACGAGCTGAATAA-CGGTAAG
*
92197717 CTCCT-CTGAGCTGAATAACGGTAAG
1 CTCATAC-GAGCTGAATAACGGTAAG
* *
92197742 CTCATACGAGCTGAGTATCGGTAAG
1 CTCATACGAGCTGAATAACGGTAAG
*
92197767 CTCATAAGAGCT
1 CTCATACGAGCT
92197779 AAAATCGGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 9 0.17
25 38 0.72
26 5 0.09
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
CTCATACGAGCTGAATAACGGTAAG
Found at i:92199439 original size:24 final size:26
Alignment explanation
Indices: 92199412--92199475 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 26
92199402 AACACACCAT
92199412 AGCTTTCATGAGCTTTTC-GAT-TAC
1 AGCTTTCATGAGCTTTTCTGATATAC
92199436 AGCTCTT-ATGAGC-TTTCTGATATAC
1 AGCT-TTCATGAGCTTTTCTGATATAC
* *
92199461 AACTTGCATGAGCTT
1 AGCTTTCATGAGCTT
92199476 CCCGTTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 4 0.12
24 14 0.42
25 14 0.42
26 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (26 bp):
AGCTTTCATGAGCTTTTCTGATATAC
Found at i:92199495 original size:25 final size:25
Alignment explanation
Indices: 92199467--92199528 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
92199457 ATACAACTTG
* *
92199467 CATGAGCTTCCCGTTATTTAGCTCA
1 CATGAGCTTCCCGTTATATAACTCA
92199492 CATGAGCTTCCCGTTATATAACTCA
1 CATGAGCTTCCCGTTATATAACTCA
* *
92199517 AAAGAGCTTCCC
1 CATGAGCTTCCC
92199529 ATTTACATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
CATGAGCTTCCCGTTATATAACTCA
Found at i:92200638 original size:56 final size:56
Alignment explanation
Indices: 92200548--92200679 Score: 158
Period size: 56 Copynumber: 2.4 Consensus size: 56
92200538 GCTCAAATTG
* * * ** * *
92200548 CTCACATGGCCTAGCATACGGGTGTGTGGTTTGGCCGTGTGACCTAAGTCAGTATA
1 CTCACACGGCCTAGCACACGAGCATGTGGCTTGGCCGTGTGACCCAAGTCAGTATA
*
92200604 CTCACACGGCCTAGCACACGAGCATGTGGCTTGGCCGTGTGTCCCAAGTCAGTATA
1 CTCACACGGCCTAGCACACGAGCATGTGGCTTGGCCGTGTGACCCAAGTCAGTATA
* *
92200660 TTCACACAGGCATAG-ACACG
1 CTCACAC-GGCCTAGCACACG
92200680 GGCTGGGACA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
56 59 0.91
57 6 0.09
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (56 bp):
CTCACACGGCCTAGCACACGAGCATGTGGCTTGGCCGTGTGACCCAAGTCAGTATA
Found at i:92202543 original size:41 final size:39
Alignment explanation
Indices: 92202414--92202635 Score: 126
Period size: 44 Copynumber: 5.3 Consensus size: 39
92202404 TCCTAGCATA
* * *
92202414 TTTGTTTAGCATTTGAAG-AATTTTTTTTATTCGTATAATT
1 TTTGTTTAGCATAT-AAGAAATATTTTTTATTCTTAT-ATT
* * * * *
92202454 TTTGTTTAGCAGT-TGATGAAATTTTTTTCAGTATTCGTAAAATA
1 TTTGTTTAGCA-TAT-AAGAAATATTTTT---TATTC-TTATATT
92202498 TTTGTTTAGCATATAAAGAAATATTTTTTATTCTTATATCT
1 TTTGTTTAGCATAT-AAGAAATATTTTTTATTCTTATAT-T
* * * *
92202539 TTTGTTTAGCAGT-TGATGAAATTTTTTTTAGTATTCTTAAAATA
1 TTTGTTTAGCA-TAT-AAGAAA-TATTTTT--TATTCTT-ATATT
* *
92202583 TTTGTTTAGCATATGAGAAATATTTTTTTTATTCGTATAATT
1 TTTGTTTAGCATATAAGAAATA--TTTTTTATTCTTAT-ATT
92202625 TTTGTTTAGCA
1 TTTGTTTAGCA
92202636 GCTGATGATT
Statistics
Matches: 143, Mismatches: 22, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
40 19 0.13
41 33 0.23
42 27 0.19
43 6 0.04
44 54 0.38
45 4 0.03
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (39 bp):
TTTGTTTAGCATATAAGAAATATTTTTTATTCTTATATT
Found at i:92202557 original size:85 final size:85
Alignment explanation
Indices: 92202393--92202787 Score: 472
Period size: 85 Copynumber: 4.6 Consensus size: 85
92202383 TTCTTTAGTA
* * ** * *
92202393 TTTTTTAGTTTTCCTAGCATATTTGTTTAGCATTTGAAG-AATTTTTTTTATTCGTATAATTTTT
1 TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATATTTTTTATTCGTATAATTTTT
92202457 GTTTAGCAGTTGATGAAATT
66 GTTTAGCAGTTGATGAAATT
* * *
92202477 TTTTTCAGTATTCGTAAAATATTTGTTTAGCATATAAAGAAATATTTTTTATTCTTAT-ATCTTT
1 TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATATTTTTTATTCGTATAAT-TTT
92202541 TGTTTAGCAGTTGATGAAATT
65 TGTTTAGCAGTTGATGAAATT
*
92202562 TTTTTTAGTATTCTTAAAATATTTGTTTAGCATATG-AGAAATATTTTTTTTATTCGTATAATTT
1 TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATA--TTTTTTATTCGTATAATTT
* **
92202626 TTGTTTAGCAGCTGATGATTTT
64 TTGTTTAGCAGTTGATGAAATT
*
92202648 TTTTTTAGTATTTGTAAAATATTTGTTTAGCATATGAAGAAATATTTTGTTTCTATTCGTATAAT
1 TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATA--TT-TTT-TATTCGTATAAT
* * ** *
92202713 ATATGTTTATTAGTCGATGAAATAT
62 TTTTGTTTAGCAGTTGATGAAAT-T
* * * * * *
92202738 TGTTTTAGTATTTGTATAATATTTGTCTAGCATCTTAAGAAATATTTTTT
1 TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATATTTTTT
92202788 TTGTACTTGT
Statistics
Matches: 271, Mismatches: 31, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
84 41 0.15
85 73 0.27
86 69 0.25
87 16 0.06
88 5 0.02
89 27 0.10
90 40 0.15
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (85 bp):
TTTTTTAGTATTCGTAAAATATTTGTTTAGCATATGAAGAAATATTTTTTATTCGTATAATTTTT
GTTTAGCAGTTGATGAAATT
Found at i:92202676 original size:22 final size:22
Alignment explanation
Indices: 92202651--92202811 Score: 85
Period size: 22 Copynumber: 7.2 Consensus size: 22
92202641 TGATTTTTTT
92202651 TTTAGTATTTGTAAAATATTTG
1 TTTAGTATTTGTAAAATATTTG
* * *
92202673 TTTAGCATATGAAGAAATATTTTG
1 TTTAGTATTTGTA-AAATA-TTTG
* * * *
92202697 TTT-CTATTCGTATAATATATG
1 TTTAGTATTTGTAAAATATTTG
* * * *
92202718 TTTATTAGTCGATGAAATA-TTG
1 TTTAGTATTTG-TAAAATATTTG
*
92202740 TTTTAGTATTTGTATAATATTTG
1 -TTTAGTATTTGTAAAATATTTG
* * * *
92202763 TCTAGCATCTT-AAGAAATATTTT
1 TTTAGTAT-TTGTA-AAATATTTG
* *
92202786 TTTTGTACTTGTAAAATATTTG
1 TTTAGTATTTGTAAAATATTTG
92202808 TTTA
1 TTTA
92202812 CCATCTTAAG
Statistics
Matches: 98, Mismatches: 32, Indels: 18
0.66 0.22 0.12
Matches are distributed among these distances:
21 6 0.06
22 46 0.47
23 39 0.40
24 7 0.07
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (22 bp):
TTTAGTATTTGTAAAATATTTG
Found at i:92202676 original size:171 final size:175
Alignment explanation
Indices: 92202393--92202789 Score: 504
Period size: 171 Copynumber: 2.3 Consensus size: 175
92202383 TTCTTTAGTA
* * ** *
92202393 TTTTTTAGTTTTCCTAGCATATTTGTTTAGCATTTGA-AGA-ATTTTTTTTATTCGTATAATTTT
1 TTTTTTAGTATTCTTAAAATATTTGTTTAGCATTTGAGAAATATTTTTTTTATTCGTATAATTTT
*
92202456 TGTTTAGCAGTTGATGAAATTTTTTTCAGTATTCGTAAAATATTTGTTTAGCATATAAAGAAATA
66 TGTTTAGCAGCTGATGAAATTTTTTTCAGTATTCGTAAAATATTTGTTTAGCATATAAAGAAATA
* * * *
92202521 -TT-TTT-TATTCTTAT-ATCTTTTGTTTAGCAGTTGATGAAAT-T
131 TTTGTTTCTATTCGTATAAT-ATATGTTTAGCAGTCGATGAAATAT
*
92202562 TTTTTTAGTATTCTTAAAATATTTGTTTAGCATATGAGAAATATTTTTTTTATTCGTATAATTTT
1 TTTTTTAGTATTCTTAAAATATTTGTTTAGCATTTGAGAAATATTTTTTTTATTCGTATAATTTT
** * * *
92202627 TGTTTAGCAGCTGATGATTTTTTTTTTAGTATTTGTAAAATATTTGTTTAGCATATGAAGAAATA
66 TGTTTAGCAGCTGATGAAATTTTTTTCAGTATTCGTAAAATATTTGTTTAGCATATAAAGAAATA
**
92202692 TTTTGTTTCTATTCGTATAATATATGTTTATTAGTCGATGAAATAT
131 -TTTGTTTCTATTCGTATAATATATGTTTAGCAGTCGATGAAATAT
* * * *
92202738 TGTTTTAGTATT-TGTATAATATTTGTCTAGCATCTTAAGAAATATTTTTTTT
1 TTTTTTAGTATTCT-TAAAATATTTGTTTAGCAT-TTGAGAAATATTTTTTTT
92202790 GTACTTGTAA
Statistics
Matches: 195, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
169 32 0.16
170 2 0.01
171 82 0.42
173 2 0.01
174 3 0.02
175 27 0.14
176 31 0.16
177 16 0.08
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (175 bp):
TTTTTTAGTATTCTTAAAATATTTGTTTAGCATTTGAGAAATATTTTTTTTATTCGTATAATTTT
TGTTTAGCAGCTGATGAAATTTTTTTCAGTATTCGTAAAATATTTGTTTAGCATATAAAGAAATA
TTTGTTTCTATTCGTATAATATATGTTTAGCAGTCGATGAAATAT
Found at i:92202755 original size:45 final size:43
Alignment explanation
Indices: 92202411--92202846 Score: 159
Period size: 45 Copynumber: 10.1 Consensus size: 43
92202401 TTTTCCTAGC
* * *
92202411 ATATTTGTTTAGCATTTGAAG-AAT-TTTTTT--TATTCGTATA
1 ATATATGTTTA-CATATGAAGAAATATTTTTTAGTATTTGTATA
* * * * *
92202451 ATTTTTGTTTAGCAGT-TGATGAAAT-TTTTTTCAGTATTCGTAAA
1 ATATATGTTTA-CA-TATGAAGAAATATTTTTT-AGTATTTGTATA
* * *
92202495 ATATTTGTTTAGCATATAAAGAAATATTTTTTA-T-TCT-TAT-
1 ATATATGTTTA-CATATGAAGAAATATTTTTTAGTATTTGTATA
* * * * *
92202535 ATCTTTTGTTTAGCAGT-TGATGAAATTTTTTTTAGTATTCT-TAAA
1 AT-ATATGTTTA-CA-TATGAAGAAATATTTTTTAGTATT-TGTATA
* * *
92202580 ATATTTGTTTAGCATATG-AGAAATATTTTTT-TTATTCGTATA
1 ATATATGTTTA-CATATGAAGAAATATTTTTTAGTATTTGTATA
* * ** * ** * *
92202622 ATTTTTGTTTAGCAGCTGATGATTTTTTTTTTAGTATTTGTAAA
1 ATATATGTTTA-CATATGAAGAAATATTTTTTAGTATTTGTATA
* ** *
92202666 ATATTTGTTTAGCATATGAAGAAATATTTTGTTTCTATTCGTATA
1 ATATATGTTTA-CATATGAAGAAATATTTT-TTAGTATTTGTATA
* *
92202711 ATATATGTTTA-TTAGTCGATGAAATATTGTTTTAGTATTTGTATA
1 ATATATGTTTACATA-T-GAAGAAATATT-TTTTAGTATTTGTATA
* * * * * * *
92202756 ATATTTGTCTAGCATCTTAAGAAATATTTTTTTTGTACTTGTAAA
1 ATATATGTTTA-CATATGAAGAAATA-TTTTTTAGTATTTGTATA
* * * * * *
92202801 ATATTTGTTTACCATCTTAAGGATTATTTTTT-G-ACTTGTATA
1 ATATATGTTTA-CATATGAAGAAATATTTTTTAGTATTTGTATA
92202843 ATAT
1 ATAT
92202847 TTATTTATCA
Statistics
Matches: 310, Mismatches: 62, Indels: 46
0.74 0.15 0.11
Matches are distributed among these distances:
40 19 0.06
41 37 0.12
42 37 0.12
43 27 0.09
44 84 0.27
45 100 0.32
46 5 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
ATATATGTTTACATATGAAGAAATATTTTTTAGTATTTGTATA
Found at i:92202846 original size:42 final size:42
Alignment explanation
Indices: 92202749--92202902 Score: 141
Period size: 42 Copynumber: 3.6 Consensus size: 42
92202739 GTTTTAGTAT
* * * *
92202749 TTGTATAATATTTGTCTAGCATCTTAAGAAATATTTTTTTTGTAC
1 TTGTATAATATTTGTTTACCATCTTAAG-GAT-TATTTTTTG-AC
*
92202794 TTGTAAAATATTTGTTTACCATCTTAAGGATTATTTTTTGAC
1 TTGTATAATATTTGTTTACCATCTTAAGGATTATTTTTTGAC
* * * * *
92202836 TTGTATAATATTTATTTATCATGTTGAGGAATATTAATTTT-A-
1 TTGTATAATATTTGTTTACCATCTTAAGGATTATT--TTTTGAC
*
92202878 TTCGTATAATATTTGCTTACCATCT
1 TT-GTATAATATTTGTTTACCATCT
92202903 CAGCATAGGG
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 33 0.36
43 27 0.30
44 6 0.07
45 25 0.27
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (42 bp):
TTGTATAATATTTGTTTACCATCTTAAGGATTATTTTTTGAC
Found at i:92204538 original size:25 final size:25
Alignment explanation
Indices: 92204497--92204544 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
92204487 TTTATGCATG
*
92204497 AAAATTTAATTTAATTTAATTTTTA
1 AAAATTTAATATAATTTAATTTTTA
*
92204522 AAAATTATAATAT-ATTTACTTTT
1 AAAATT-TAATATAATTTAATTTT
92204545 ATATATTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
AAAATTTAATATAATTTAATTTTTA
Found at i:92204919 original size:28 final size:28
Alignment explanation
Indices: 92204879--92204938 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
92204869 ATAAATGATA
* *
92204879 AATTGATGCTCAAAATGAGCCACTTGTG
1 AATTGATGCTCAAAATAAGCCACCTGTG
*
92204907 AATTGATGCTCAAAGTAAGCCACCTGTG
1 AATTGATGCTCAAAATAAGCCACCTGTG
92204935 AATT
1 AATT
92204939 ATGTTGAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (28 bp):
AATTGATGCTCAAAATAAGCCACCTGTG
Found at i:92207310 original size:21 final size:22
Alignment explanation
Indices: 92207262--92207344 Score: 88
Period size: 21 Copynumber: 4.0 Consensus size: 22
92207252 CAAAAACACC
*
92207262 AACAGAAGCTCG-AA-AG-CTA
1 AACAGAAGCTCGTAAGAGTCTG
*
92207281 AACAGAAGCTCATAAGAGT-TG
1 AACAGAAGCTCGTAAGAGTCTG
* *
92207302 AACAAAAGCTCGTAAGA-TCTT
1 AACAGAAGCTCGTAAGAGTCTG
92207323 AACAGAAGCTCGTAAGAG-CTG
1 AACAGAAGCTCGTAAGAGTCTG
92207344 A
1 A
92207345 TCCACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
19 11 0.21
20 3 0.06
21 38 0.73
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (22 bp):
AACAGAAGCTCGTAAGAGTCTG
Found at i:92218794 original size:43 final size:43
Alignment explanation
Indices: 92218605--92218799 Score: 214
Period size: 43 Copynumber: 4.5 Consensus size: 43
92218595 TGTCATATCT
* * * * *
92218605 CAGATATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCC
1 CAGACATGGTCTTACATGTAATCTCAATA-CAATGCCAATGTCC
* * * * * *
92218648 CAGACAGGGTCTTACACGAAATC-GATTAACGATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCTCAAT-ACAATGCCAATGTCC
* *
92218691 CAGACATGGTCTTACACGTAATCTCAGTACAATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCTCAATACAATGCCAATGTCC
*
92218734 CAGACATGGTCTGACATGTAATCTCAATACAATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCTCAATACAATGCCAATGTCC
**
92218777 CAGACATTTTCTTACATGTAATC
1 CAGACATGGTCTTACATGTAATC
92218800 ACATCTCGAT
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 127 0.98
44 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCTCAATACAATGCCAATGTCC
Found at i:92220181 original size:23 final size:23
Alignment explanation
Indices: 92220150--92220203 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
92220140 GCAAGCCGCT
*
92220150 TGTATAGGTAGATGGGACCTGGC
1 TGTACAGGTAGATGGGACCTGGC
92220173 TGTACAGGTAGATGGGACCTGGC
1 TGTACAGGTAGATGGGACCTGGC
*
92220196 TTTACAGG
1 TGTACAGG
92220204 AAATGTACGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (23 bp):
TGTACAGGTAGATGGGACCTGGC
Found at i:92221770 original size:16 final size:18
Alignment explanation
Indices: 92221727--92221777 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 18
92221717 TAAATTTGCG
92221727 AAAATTTATTATATTAATT
1 AAAATTTATT-TATTAATT
*
92221746 AAAAATTATTT-TT-ATT
1 AAAATTTATTTATTAATT
* *
92221762 TAAATTTATTTCTTAA
1 AAAATTTATTTATTAA
92221778 AATATATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 12 0.44
17 4 0.15
18 2 0.07
19 9 0.33
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
AAAATTTATTTATTAATT
Found at i:92223175 original size:13 final size:13
Alignment explanation
Indices: 92223157--92223197 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
92223147 CCTCTTTACT
92223157 ATATTTAAATTTA
1 ATATTTAAATTTA
92223170 ATATTTAAGATTT-
1 ATATTTAA-ATTTA
*
92223183 ATATTTTAATTTA
1 ATATTTAAATTTA
92223196 AT
1 AT
92223198 TTAATTTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
ATATTTAAATTTA
Found at i:92225082 original size:2 final size:2
Alignment explanation
Indices: 92225077--92225115 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
92225067 AAAAAACTTT
92225077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92225116 TGAGTAGGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92225580 original size:15 final size:15
Alignment explanation
Indices: 92225560--92225595 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
92225550 TTAATATAAA
92225560 AAGAAAGGGGAAAAG
1 AAGAAAGGGGAAAAG
*
92225575 AAGAAAGGGGAGAAG
1 AAGAAAGGGGAAAAG
92225590 AAGAAA
1 AAGAAA
92225596 AAGAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (15 bp):
AAGAAAGGGGAAAAG
Found at i:92228792 original size:22 final size:22
Alignment explanation
Indices: 92228753--92228797 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
92228743 TGGCATGTAT
*
92228753 ATATTTGGCTTTAAAATGGTTG
1 ATATTTGGCTTTAAAATGCTTG
*
92228775 ATATCTTGGC-TTATAATGCTTG
1 ATAT-TTGGCTTTAAAATGCTTG
92228797 A
1 A
92228798 ATGATTGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (22 bp):
ATATTTGGCTTTAAAATGCTTG
Found at i:92230854 original size:8 final size:8
Alignment explanation
Indices: 92230841--92230865 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
92230831 ATTATGGACT
92230841 AAAATGTG
1 AAAATGTG
92230849 AAAATGTG
1 AAAATGTG
92230857 AAAATGTG
1 AAAATGTG
92230865 A
1 A
92230866 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:92231197 original size:21 final size:20
Alignment explanation
Indices: 92231168--92231208 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
92231158 CTTTGAAATG
92231168 GGGCACACGCCCGTGTGGAA
1 GGGCACACGCCCGTGTGGAA
*
92231188 GGGCAACACGCCTGTGTGGAA
1 GGGC-ACACGCCCGTGTGGAA
92231209 TTAATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAA
Found at i:92232394 original size:44 final size:45
Alignment explanation
Indices: 92232344--92232490 Score: 131
Period size: 46 Copynumber: 3.2 Consensus size: 45
92232334 CTCAGATATG
* * *
92232344 GTCTTACACTGAC-ACCTCTCGTA-GCCGATGCATGTCCCAGACAT
1 GTCTTACACTGACTACATCTCG-AGGCCGAAGCATGTCCCAAACAT
*
92232388 GTCTTACACTGGCTTACATCTCGAGGCCGAAGCATGTCCCAAACAT
1 GTCTTACACTGAC-TACATCTCGAGGCCGAAGCATGTCCCAAACAT
* * * *
92232434 GTCTTACATTAGCACT-CGTCTCAATGCC-AATGCCATGTCCCAAACAT
1 GTCTTACACT-G-ACTACATCTCGAGGCCGAA-G-CATGTCCCAAACAT
*
92232481 GTCATACACT
1 GTCTTACACT
92232491 AGCACTCGTC
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
44 12 0.14
45 3 0.04
46 45 0.53
47 24 0.28
48 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (45 bp):
GTCTTACACTGACTACATCTCGAGGCCGAAGCATGTCCCAAACAT
Found at i:92232417 original size:46 final size:46
Alignment explanation
Indices: 92232272--92232441 Score: 127
Period size: 46 Copynumber: 3.7 Consensus size: 46
92232262 GGGGTCAAGT
* ** * *
92232272 GCCGATGCCATGTCCCCGACATGGTCTTACACAAGCTCAGCATATCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-A-CATCTCGA
* * * * *
92232320 TGTCGATGTCATG-CCTCAGATATGGTCTTACACTGAC-ACCTCTCGTA
1 -GCCGATGCCATGTCC-CAGACATGGTCTTACACTGGCTACATCTCG-A
92232367 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGA
* *
92232412 GGCCGAAG-CATGTCCCAAACAT-GTCTTACA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACA
92232442 TTAGCACTCG
Statistics
Matches: 99, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.12
45 11 0.11
46 46 0.46
47 2 0.02
48 2 0.02
49 26 0.26
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGA
Found at i:92232478 original size:47 final size:47
Alignment explanation
Indices: 92232420--92232535 Score: 151
Period size: 47 Copynumber: 2.4 Consensus size: 47
92232410 GAGGCCGAAG
*
92232420 CATGTCCCAAACATGTCTTACATTAGCACTCGTCTCAATGCCAATGC
1 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCCAATGC
* * * * *
92232467 CATGTCCCAAACATGTCATACACTAGCACTCGTCTGAATGTCGATTC
1 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCCAATGC
* *
92232514 CATATGCCAAACATGGTCTTAC
1 CATGTCCCAAACAT-GTCTTAC
92232536 GTTGGCTCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 53 0.90
48 6 0.10
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (47 bp):
CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCCAATGC
Found at i:92242087 original size:18 final size:18
Alignment explanation
Indices: 92242056--92242090 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92242046 TTTAACTTCT
*
92242056 TTAGTGACTATGGACAAC
1 TTAGTCACTATGGACAAC
*
92242074 TTAGTCACTCTGGACAA
1 TTAGTCACTATGGACAA
92242091 TATCGCATCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (18 bp):
TTAGTCACTATGGACAAC
Found at i:92245468 original size:5 final size:5
Alignment explanation
Indices: 92245458--92245489 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
92245448 TATAGTGTGA
92245458 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
92245490 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:92245483 original size:9 final size:9
Alignment explanation
Indices: 92245459--92245489 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
92245449 ATAGTGTGAA
92245459 AAATAAAAT
1 AAATAAAAT
92245468 AAAATAAAAT
1 -AAATAAAAT
92245478 AAATAAAAT
1 AAATAAAAT
92245487 AAA
1 AAA
92245490 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:92261601 original size:16 final size:16
Alignment explanation
Indices: 92261553--92261619 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
92261543 GGCTCACTGG
*
92261553 AATGGAATAGAGCTAT
1 AATGGAATAGAGCTGT
92261569 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
* *
92261585 AATGGAATAAAGTTGT
1 AATGGAATAGAGCTGT
* *
92261601 AATGTAATAGAACTGT
1 AATGGAATAGAGCTGT
92261617 AAT
1 AAT
92261620 CAGAAATTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.28
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:92264694 original size:19 final size:18
Alignment explanation
Indices: 92264654--92264694 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
92264644 AATTTTACAC
*
92264654 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
92264672 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
92264691 ATTT
1 ATTT
92264695 TACTTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:92267584 original size:27 final size:27
Alignment explanation
Indices: 92267534--92267587 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
92267524 TGTCATGTGA
* *
92267534 AATTGAATGGTAAATTATTGTTACATG
1 AATTGAATGGTAAATTACTATTACATG
*
92267561 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGTAAATTACTATTACATG
92267588 GGTTGTATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.41
Consensus pattern (27 bp):
AATTGAATGGTAAATTACTATTACATG
Found at i:92278887 original size:47 final size:47
Alignment explanation
Indices: 92278818--92278913 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
92278808 AGTGGAAGGC
*
92278818 TTGTTAATTAGGAACTTTTAATGGTTTTTAAAGGGTAAAATAATAAA
1 TTGTTAATTAGGAACTTTTAATGATTTTTAAAGGGTAAAATAATAAA
*
92278865 TTGTTAATTAGGAGCTTTTAATGATTTTTAAAGGGTAAAATAATAAA
1 TTGTTAATTAGGAACTTTTAATGATTTTTAAAGGGTAAAATAATAAA
92278912 TT
1 TT
92278914 AATAATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.42
Consensus pattern (47 bp):
TTGTTAATTAGGAACTTTTAATGATTTTTAAAGGGTAAAATAATAAA
Found at i:92293748 original size:3 final size:3
Alignment explanation
Indices: 92293740--92293764 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
92293730 GCAGCGGGTT
92293740 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
92293765 GTAACAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:92300872 original size:56 final size:58
Alignment explanation
Indices: 92300804--92300927 Score: 191
Period size: 56 Copynumber: 2.2 Consensus size: 58
92300794 ATTTGCAGGT
* *
92300804 CATTTTCATTTTCATTTTGGAGAAAAC-ATAATCATTTCCAAAT-TATT-TCATTTCTT
1 CATTTTCATTTTCATTTTGAAGAAAACTATAATCATTTCCAAATAT-TTCTCATTTCTC
*
92300860 TATTTTCATTTTCATTTTGAAGAAAACTATAATCATTTCCAAATATTTCTCATTTCTC
1 CATTTTCATTTTCATTTTGAAGAAAACTATAATCATTTCCAAATATTTCTCATTTCTC
92300918 CATTTTCATT
1 CATTTTCATT
92300928 ATTTCTATTC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
56 25 0.41
57 18 0.30
58 18 0.30
ACGTcount: A:0.30, C:0.17, G:0.04, T:0.49
Consensus pattern (58 bp):
CATTTTCATTTTCATTTTGAAGAAAACTATAATCATTTCCAAATATTTCTCATTTCTC
Found at i:92309517 original size:22 final size:22
Alignment explanation
Indices: 92309489--92309554 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 22
92309479 TATATTTGAA
92309489 ATTATTTTTTAAAATTTTAAAT
1 ATTATTTTTTAAAATTTTAAAT
92309511 ATTA-TTTTT--AATTTTAAAT
1 ATTATTTTTTAAAATTTTAAAT
* *
92309530 A-TATTTTTTAATAATATAAAAT
1 ATTATTTTTTAA-AATTTTAAAT
92309552 ATT
1 ATT
92309555 TAAATATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 2 0.05
19 16 0.43
21 5 0.14
22 13 0.35
23 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTATTTTTTAAAATTTTAAAT
Found at i:92309517 original size:58 final size:54
Alignment explanation
Indices: 92309424--92309533 Score: 125
Period size: 57 Copynumber: 2.0 Consensus size: 54
92309414 ATTTTAAAAA
92309424 ATTTGAAATGTATATTTGAAATATTTTATAATATTTTTTAAAATTTTTAAATATATAT
1 ATTTGAAATGTATATTTGAAATATTTTATAATA-TTTTT--AA-TTTTAAATATATAT
* * *
92309482 ATTTGAAAT-TATTTTTTAAA-ATTTTAAATATTATTTTTAATTTTAAATATAT
1 ATTTGAAATGTATATTTGAAATATTTT--ATAATATTTTTAATTTTAAATATAT
92309534 TTTTTAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
54 12 0.26
55 2 0.04
56 5 0.11
57 14 0.30
58 14 0.30
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (54 bp):
ATTTGAAATGTATATTTGAAATATTTTATAATATTTTTAATTTTAAATATATAT
Found at i:92309538 original size:19 final size:19
Alignment explanation
Indices: 92309482--92309541 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
92309472 AAATATATAT
*
92309482 ATTTGAAAT-TATTTTTTAAA
1 ATTTTAAATATATTTTTT--A
92309502 ATTTTAAATAT-TATTTTTA
1 ATTTTAAATATAT-TTTTTA
92309521 ATTTTAAATATATTTTTTA
1 ATTTTAAATATATTTTTTA
92309540 AT
1 AT
92309542 AATATAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 20 0.56
20 10 0.28
21 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTAAATATATTTTTTA
Found at i:92309644 original size:18 final size:20
Alignment explanation
Indices: 92309618--92309662 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
92309608 TAGATGTATA
* *
92309618 TTTTAAATTTTA-A-ATATT
1 TTTTTAATTTTACATATAAT
92309636 TTTTTAATTTTACATATAAT
1 TTTTTAATTTTACATATAAT
92309656 TTTTTAA
1 TTTTTAA
92309663 ATTATGACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 1 0.04
20 11 0.48
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTAATTTTACATATAAT
Found at i:92309736 original size:21 final size:20
Alignment explanation
Indices: 92309712--92309750 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92309702 TTTTAAATTT
*
92309712 TATTTAAATTTTAAAAAATAA
1 TATTT-AATTTAAAAAAATAA
*
92309733 TATTTTATTTAAAAAAAT
1 TATTTAATTTAAAAAAAT
92309751 GAAATTTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTTAATTTAAAAAAATAA
Found at i:92309806 original size:19 final size:19
Alignment explanation
Indices: 92309782--92309819 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
92309772 AAATAAAAAA
*
92309782 TTATTTGTTAAAAAAATAT
1 TTATTTATTAAAAAAATAT
92309801 TTATTTATTAAAAAAATAT
1 TTATTTATTAAAAAAATAT
92309820 GACTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
TTATTTATTAAAAAAATAT
Found at i:92309826 original size:19 final size:18
Alignment explanation
Indices: 92309776--92309838 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 18
92309766 TAGAAAAAAT
*
92309776 AAAAAAT-T-ATTTGTTA
1 AAAAAATATGATTTATTA
*
92309792 AAAAAATATTTATTTATTA
1 AAAAAATA-TGATTTATTA
*
92309811 AAAAAATATGACTTTATTT
1 AAAAAATATGA-TTTATTA
*
92309830 AAAATATAT
1 AAAAAATAT
92309839 ATTAAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
16 7 0.18
18 3 0.08
19 29 0.74
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAAAATATGATTTATTA
Found at i:92309882 original size:20 final size:20
Alignment explanation
Indices: 92309828--92309882 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
92309818 ATGACTTTAT
*
92309828 TTAAAATATATATTAAAAAA
1 TTAAAAAATATATTAAAAAA
* *
92309848 -TAAAAATTTAAATTAAAAAA
1 TTAAAAA-ATATATTAAAAAA
92309868 TTAAAAAATATATTA
1 TTAAAAAATATATTA
92309883 TAACTGGTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 5 0.18
20 17 0.61
21 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TTAAAAAATATATTAAAAAA
Found at i:92312646 original size:30 final size:30
Alignment explanation
Indices: 92312610--92312711 Score: 132
Period size: 30 Copynumber: 3.4 Consensus size: 30
92312600 GTCGCAGAGC
* * *
92312610 AGTTCATGTCACCTGGACATTGGCGGTTCA
1 AGTTCATATCACCCGGACATAGGCGGTTCA
* *
92312640 AGTTCATATCACCCGGACATGGGCAGTTCA
1 AGTTCATATCACCCGGACATAGGCGGTTCA
* *
92312670 AGTTCATATCACCCGAACATAGGCGGTTCG
1 AGTTCATATCACCCGGACATAGGCGGTTCA
*
92312700 AGTTCATTTCAC
1 AGTTCATATCAC
92312712 TTAGAGCAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (30 bp):
AGTTCATATCACCCGGACATAGGCGGTTCA
Found at i:92316036 original size:8 final size:8
Alignment explanation
Indices: 92316016--92316053 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
92316006 CTCCACCAAA
*
92316016 TAAAATAT
1 TAAAATTT
92316024 T-AAATTT
1 TAAAATTT
92316031 TAAAATTT
1 TAAAATTT
92316039 TAAAATTT
1 TAAAATTT
92316047 TAAAATT
1 TAAAATT
92316054 AATTTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TAAAATTT
Found at i:92316130 original size:15 final size:15
Alignment explanation
Indices: 92316093--92316124 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
92316083 AATTAATTTC
92316093 AAAATTAATAATTAA
1 AAAATTAATAATTAA
92316108 AAAATTAATAATTAA
1 AAAATTAATAATTAA
92316123 AA
1 AA
92316125 TTTTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATTAATAATTAA
Found at i:92316335 original size:21 final size:20
Alignment explanation
Indices: 92316311--92316375 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 20
92316301 ATTTAAATGT
92316311 TTTATATTATTAAAAAATATA
1 TTTA-ATTATTAAAAAATATA
*
92316332 TTTAA-AATTAAAAAATTAATA
1 TTTAATTATTAAAAAA-T-ATA
92316353 TTTAAAATT-TTAAAAAATA-A
1 TTT--AATTATTAAAAAATATA
92316373 TTT
1 TTT
92316376 CAAATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
19 9 0.24
20 6 0.16
21 11 0.30
22 1 0.03
23 10 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAATTATTAAAAAATATA
Found at i:92316341 original size:22 final size:22
Alignment explanation
Indices: 92316316--92316380 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 22
92316306 AATGTTTTAT
92316316 ATTATTAAAAAATATATTTAAA
1 ATTATTAAAAAATATATTTAAA
*
92316338 ATTA--AAAAATTAATATTTAAA
1 ATTATTAAAAAAT-ATATTTAAA
*
92316359 ATT-TTAAAAAATA-ATTTCAA
1 ATTATTAAAAAATATATTTAAA
92316379 AT
1 AT
92316381 ATATATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 14 0.38
21 13 0.35
22 10 0.27
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTATTAAAAAATATATTTAAA
Found at i:92316370 original size:23 final size:20
Alignment explanation
Indices: 92316319--92316361 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
92316309 GTTTTATATT
92316319 ATTAAAAAA-TATATTTAAA
1 ATTAAAAAATTATATTTAAA
92316338 ATTAAAAAATTAATATTTAAA
1 ATTAAAAAATT-ATATTTAAA
92316359 ATT
1 ATT
92316362 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 9 0.41
20 1 0.05
21 12 0.55
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTAAAAAATTATATTTAAA
Found at i:92316398 original size:42 final size:42
Alignment explanation
Indices: 92316320--92316401 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
92316310 TTTTATATTA
*
92316320 TTAAAAAATATATTTAAAATTAAAAAATTAATATTTAAAATT
1 TTAAAAAATATATTTAAAATTAAAAAATTAAAATTTAAAATT
* * * *
92316362 TTAAAAAATA-ATTTCAAATATATATATTTAAAATTTAAAA
1 TTAAAAAATATATTTAAAAT-TAAAAAATTAAAATTTAAAA
92316402 AAAAACATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 8 0.24
42 26 0.76
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (42 bp):
TTAAAAAATATATTTAAAATTAAAAAATTAAAATTTAAAATT
Found at i:92316536 original size:25 final size:24
Alignment explanation
Indices: 92316477--92316543 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 24
92316467 TAAATAAGGA
**
92316477 TAAATAAAAAAACTTA-AAAAAAG
1 TAAATAAAAAAACAAAGAAAAAAG
*
92316500 TAAATAAAAAAAGAAAGAAAAAAG
1 TAAATAAAAAAACAAAGAAAAAAG
92316524 T-AATAAAACAAAACAAAGAA
1 TAAAT-AAA-AAAACAAAGAA
92316544 TCTGACGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.43
24 11 0.30
25 10 0.27
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.12
Consensus pattern (24 bp):
TAAATAAAAAAACAAAGAAAAAAG
Found at i:92324410 original size:16 final size:16
Alignment explanation
Indices: 92324382--92324414 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92324372 CATTAGATTA
92324382 TTATATGAAAAATAAT
1 TTATATGAAAAATAAT
92324398 TTATA-GAACAAATAAT
1 TTATATGAA-AAATAAT
92324414 T
1 T
92324415 AATAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (16 bp):
TTATATGAAAAATAAT
Found at i:92325312 original size:19 final size:17
Alignment explanation
Indices: 92325284--92325322 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
92325274 AAATGGCAAC
92325284 TATTAATTTCATTAAATTT
1 TATTAATTTCA--AAATTT
*
92325303 TATTATTTTCAAAATTT
1 TATTAATTTCAAAATTT
92325320 TAT
1 TAT
92325323 ACGTCAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
19 10 0.53
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTAATTTCAAAATTT
Found at i:92341014 original size:43 final size:44
Alignment explanation
Indices: 92340895--92341015 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 44
92340885 AGCTCGTACA
* * *
92340895 ATGCCAACGTCCC-GGCGTAGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATCG
* * * *
92340937 ATGCC-ACTGTCCTAAATAG-GGTTTTACACG-AAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAAATATCG
92340979 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA
92341016 TAAGTCGATG
Statistics
Matches: 61, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
41 3 0.05
42 32 0.52
43 25 0.41
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATCG
Found at i:92345034 original size:30 final size:30
Alignment explanation
Indices: 92344998--92345057 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
92344988 TTCCCGAGCC
92344998 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
1 TAGGGGCAAAA-TAGTAATTATGCAAAAGTT
* *
92345028 TAGGGGCAAAATAGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATAGTAATTATGCAAAAGTT
92345058 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATAGTAATTATGCAAAAGTT
Found at i:92345534 original size:47 final size:47
Alignment explanation
Indices: 92345483--92345655 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 47
92345473 TGAACATCTA
*
92345483 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACGTCCG
* * * * *
92345530 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGT-AACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CGTCCG
* *
92345577 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCG-AACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACGTCC-G
*
92345623 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92345656 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
43 2 0.02
44 4 0.04
45 3 0.03
46 35 0.34
47 53 0.51
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACGTCCG
Found at i:92349365 original size:10 final size:10
Alignment explanation
Indices: 92349346--92349395 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
92349336 TTAAATTCTC
92349346 AAAGATAAAT
1 AAAGATAAAT
92349356 ACAA-ATAAAT
1 A-AAGATAAAT
92349366 AAAGATAAAT
1 AAAGATAAAT
92349376 AAAGATAAAT
1 AAAGATAAAT
92349386 GAAA-ATAAAT
1 -AAAGATAAAT
92349396 CCTAAAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:92351072 original size:21 final size:21
Alignment explanation
Indices: 92351048--92351099 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
92351038 ATAAATAATT
* * *
92351048 AAATAATGAATCATTAAGATA
1 AAATAATAAATAATTAAAATA
92351069 AAATAATAAATAATTAAAATA
1 AAATAATAAATAATTAAAATA
92351090 AAATAATAAA
1 AAATAATAAA
92351100 GAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (21 bp):
AAATAATAAATAATTAAAATA
Found at i:92360415 original size:10 final size:10
Alignment explanation
Indices: 92360396--92360455 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
92360386 TTAAATTCTA
92360396 AAAGATAAAT
1 AAAGATAAAT
92360406 ACAA-ATAAAT
1 A-AAGATAAAT
*
92360416 AAAGATAATT
1 AAAGATAAAT
*
92360426 AAAGATAATT
1 AAAGATAAAT
92360436 AAAGATAAAT
1 AAAGATAAAT
*
92360446 AAAAATAAAT
1 AAAGATAAAT
92360456 CCTAAATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:92361280 original size:96 final size:97
Alignment explanation
Indices: 92361110--92361293 Score: 264
Period size: 96 Copynumber: 1.9 Consensus size: 97
92361100 TAATTTAATT
* * * *
92361110 TTTTTATTTTTACTTAGGAATATATTGACCCTTTTGACACGAAGAGAGATGACAGCCAAGAACTC
1 TTTTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACTC
92361175 CACCCCGGTTACTCAGCCCAACATACTCCTAA
66 CACCCCGGTTACTCAGCCCAACATACTCCTAA
* * * *
92361207 TTTTTATTTTT-CTTAAGAACATATCGAACTTTTTGACTCGAAGGGAGATGACAGCCAAGCAC-C
1 TTTTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACTC
*
92361270 TCACCTCGGTTACTCAGCCCAACA
66 -CACCCCGGTTACTCAGCCCAACA
92361294 CATTCTTAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 65 0.84
97 11 0.14
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (97 bp):
TTTTTATTTTTACTTAAGAACATATCGAACCTTTTGACACGAAGAGAGATGACAGCCAAGAACTC
CACCCCGGTTACTCAGCCCAACATACTCCTAA
Found at i:92362357 original size:12 final size:12
Alignment explanation
Indices: 92362340--92362383 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
92362330 GTTAATATCC
92362340 AAATAAAGTAAT
1 AAATAAAGTAAT
*
92362352 AAATAATA-AAAT
1 AAATAA-AGTAAT
92362364 AAAATAAAGTAAT
1 -AAATAAAGTAAT
92362377 AAATAAA
1 AAATAAA
92362384 AAAGAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (12 bp):
AAATAAAGTAAT
Found at i:92362366 original size:5 final size:5
Alignment explanation
Indices: 92362356--92362433 Score: 54
Period size: 5 Copynumber: 15.4 Consensus size: 5
92362346 AGTAATAAAT
* * * * *
92362356 AATAA AATAA AATAA AGT-- AATAA ATAAAA AAGAA AACAA AAGAA AATAATA
1 AATAA AATAA AATAA AATAA AATAA A-ATAA AATAA AATAA AATAA AAT-A-A
92362407 AATAA AAT-A AATAAA AATAA AATAA AA
1 AATAA AATAA AAT-AA AATAA AATAA AA
92362434 ATTGGGTTAC
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
3 2 0.03
4 4 0.07
5 39 0.66
6 10 0.17
7 4 0.07
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:92362369 original size:25 final size:23
Alignment explanation
Indices: 92362340--92362426 Score: 90
Period size: 22 Copynumber: 3.7 Consensus size: 23
92362330 GTTAATATCC
92362340 AAATAAAGTAATAAATAATAAAATA
1 AAATAAA-TAA-AAATAATAAAATA
*
92362365 AAATAAAGTAATAAATAA-AAAAGA
1 AAATAAA-TAA-AAATAATAAAATA
*
92362389 AAACAAA-AGAAAATAAT-AAATA
1 AAATAAATA-AAAATAATAAAATA
92362411 AAATAAATAAAAATAA
1 AAATAAATAAAAATAA
92362427 AATAAAAATT
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
22 24 0.44
23 2 0.04
24 11 0.20
25 18 0.33
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (23 bp):
AAATAAATAAAAATAATAAAATA
Found at i:92362381 original size:29 final size:29
Alignment explanation
Indices: 92362349--92362433 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 29
92362339 CAAATAAAGT
*
92362349 AATAAATAATAAAATAAAATAAAGTAATA
1 AATAAATAATAAAATAAAATAAAATAATA
* * * *
92362378 AATAAAAAAGAAAACAAAAGAAAATAATA
1 AATAAATAATAAAATAAAATAAAATAATA
92362407 AATAAAATAAATAAAAATAAAATAAAA
1 AAT-AAAT-AAT-AAAATAAAATAAAA
92362434 ATTGGGTTAC
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 27 0.61
30 3 0.07
31 2 0.05
32 12 0.27
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.18
Consensus pattern (29 bp):
AATAAATAATAAAATAAAATAAAATAATA
Found at i:92366149 original size:42 final size:42
Alignment explanation
Indices: 92366071--92366183 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 42
92366061 AGTGCTAACA
* * * * *
92366071 GAAACCCATAAGGGTTGAACGAAAGTTCATAGGAGCTGAATG
1 GAAACCCATAAGGGTTAAACGAAAGCTCAAAAGAGCTGAACG
92366113 GAAACCCATAAGGGTTAAAC-AGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACGA-AAGCTCAAAAGAGCTGAACG
** * *
92366155 GAAACCCATTTGGGTTAAATGAAAACTCA
1 GAAACCCATAAGGGTTAAACGAAAGCTCA
92366184 TATGAGTTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 58 0.97
43 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.18
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACGAAAGCTCAAAAGAGCTGAACG
Found at i:92366180 original size:21 final size:21
Alignment explanation
Indices: 92366156--92366195 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
92366146 AGCTGAACGG
* *
92366156 AAACCCATTTGGGTTAAATGA
1 AAACCCATATGAGTTAAATGA
*
92366177 AAACTCATATGAGTTAAAT
1 AAACCCATATGAGTTAAAT
92366196 AGAAGTTCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (21 bp):
AAACCCATATGAGTTAAATGA
Found at i:92369678 original size:30 final size:30
Alignment explanation
Indices: 92369581--92369688 Score: 101
Period size: 30 Copynumber: 3.5 Consensus size: 30
92369571 GATTAATGAG
* *
92369581 AATTTTCAAAAAATTTAAGAGAGCTTAATTAA
1 AATTTTC-AAAAATTTAAAAG-GTTTAATTAA
* *
92369613 AATTTTCAAAAATATAAAAGGTATAA-TAA
1 AATTTTCAAAAATTTAAAAGGTTTAATTAA
* * * *
92369642 GGATTTTCAAATATTTGAAGGGTTTAATTAA
1 -AATTTTCAAAAATTTAAAAGGTTTAATTAA
92369673 AATTTTCTAAAAATTT
1 AATTTTC-AAAAATTT
92369689 CAGAGGAAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
29 3 0.05
30 30 0.49
31 21 0.34
32 7 0.11
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (30 bp):
AATTTTCAAAAATTTAAAAGGTTTAATTAA
Found at i:92371961 original size:2 final size:2
Alignment explanation
Indices: 92371954--92371999 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
92371944 TTCCGATGTT
92371954 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
92371996 CA CA
1 CA CA
92372000 GTAATATTGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:92373581 original size:1 final size:1
Alignment explanation
Indices: 92373575--92373603 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
92373565 CCAAACGCAC
92373575 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
92373604 CAGAAAGCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:92395810 original size:30 final size:30
Alignment explanation
Indices: 92395696--92395821 Score: 130
Period size: 30 Copynumber: 4.2 Consensus size: 30
92395686 TGTTAATATA
* * * * *
92395696 TTGCTTACACAAGATAACAGTATAATAAAA
1 TTGCTCACACAAGCTGACAGTATAATAGAT
** *
92395726 TTGCTCACACAAGCTTTCATTATAATAGAT
1 TTGCTCACACAAGCTGACAGTATAATAGAT
* * *
92395756 TTGCTCACACAAGTTGTTC-TTATAATAGAT
1 TTGCTCACACAAGCTG-ACAGTATAATAGAT
92395786 TTGCTCACACAAGCTGACAGTATAATAGA-
1 TTGCTCACACAAGCTGACAGTATAATAGAT
92395815 TTGCTCA
1 TTGCTCA
92395822 TCCGGGCTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
29 8 0.10
30 72 0.88
31 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.33
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACAGTATAATAGAT
Found at i:92408743 original size:2 final size:2
Alignment explanation
Indices: 92408730--92408762 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
92408720 CCATAAAACC
*
92408730 CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
92408763 CATATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:92411368 original size:12 final size:13
Alignment explanation
Indices: 92411343--92411371 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
92411333 GTACATGTTC
92411343 ATAAAATAAATAT
1 ATAAAATAAATAT
92411356 ATAAAAT-AATAT
1 ATAAAATAAATAT
92411368 ATAA
1 ATAA
92411372 CACATGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAAAATAAATAT
Found at i:92411946 original size:14 final size:13
Alignment explanation
Indices: 92411927--92411963 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
92411917 AGTAAGATAT
92411927 AATAATAATATAAA
1 AATAATAATAT-AA
*
92411941 AATAATAATGTAA
1 AATAATAATATAA
92411954 AATAATAATA
1 AATAATAATA
92411964 ATTTGTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AATAATAATATAA
Found at i:92413038 original size:26 final size:26
Alignment explanation
Indices: 92413009--92413118 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
92412999 TGGTACAAAT
92413009 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
92413035 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
92413061 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
92413087 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
92413113 TGATAA
1 TGATAA
92413119 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:92414814 original size:27 final size:26
Alignment explanation
Indices: 92414735--92414849 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
92414725 TGGAGGAAGC
* * *
92414735 GTTCTGGTGGCTATGCCACAAATACCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
92414762 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
92414789 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* * * *
92414816 ATATCTGATGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
92414843 GTTCTGG
1 GTTCTGG
92414850 CAGTCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:92414842 original size:54 final size:54
Alignment explanation
Indices: 92414735--92414849 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
92414725 TGGAGGAAGC
* *
92414735 GTTCTGGTGGCTATGCCACAAATACCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATACCTGATCTGATGACTCTGCCACATATATCT
* * * * * *
92414789 GTTCTGGTGGCTCTGCCACGATTATCTATATCTGATGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATACCT-GATCTGATGACTCTGCCACATATATCT
92414843 GTTCTGG
1 GTTCTGG
92414850 CAGTCATGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATACCTGATCTGATGACTCTGCCACATATATCT
Found at i:92417205 original size:205 final size:205
Alignment explanation
Indices: 92416733--92417318 Score: 854
Period size: 206 Copynumber: 2.8 Consensus size: 205
92416723 AAATCTGCTT
* * * *
92416733 CTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTCCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
92416798 GTGAAAACCAAATCAGCTATGTCTTCT-ATTTGCTCCTTGTAAGCACAAGAATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGTCTT-TGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
* ** ** *
92416862 TGGATCTTGCTTCAGTGA-GATTATCT-AAAGAAGAGATCTGTTATGTATCTACTCCCCGTTGAA
130 TGGATC-TGCTTCAGT-ATAAACATCTGAAAG-CCAGATCTGCTATGTATCTACTCCCCGTTGAA
92416925 GTGGAGATGCCAGA
192 GTGGAGATGCCAGA
* *
92416939 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCCTCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
92417004 GTGAAAGCCAAATCAGCTACGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
92417069 GGATCTGCTTCAGTATAAACATTTGAAAGCCAGATATGCTATGTATCTGCTCCCCGTTGAAGTGG
131 GGATCTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTATCTACTCCCCGTTGAAGTGG
92417134 AGATGCCAGA
196 AGATGCCAGA
* * *
92417144 CTTCGATTTGCTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTACTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * *
92417209 ATGAAAGTCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAATGATGCCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATG-CCAAATCATCT
* *
92417274 TGGATCTGCTTTAGTATAAACATCTGAATGCCAGATCTGCTATGT
130 TGGATCTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGT
92417319 TGTGGCCTGC
Statistics
Matches: 342, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
204 1 0.00
205 163 0.48
206 178 0.52
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTATCTACTCCCCGTTGAAGTGG
AGATGCCAGA
Found at i:92427271 original size:15 final size:15
Alignment explanation
Indices: 92427229--92427276 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
92427219 ATAACTTTGA
*
92427229 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
92427243 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
92427258 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
92427272 ATGCA
1 ATGCA
92427277 GAAAGGATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 11 0.37
16 6 0.20
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:92430768 original size:2 final size:2
Alignment explanation
Indices: 92430755--92430787 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
92430745 CTATAAAACC
*
92430755 CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
92430788 CATATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:92433400 original size:14 final size:12
Alignment explanation
Indices: 92433362--92433422 Score: 50
Period size: 13 Copynumber: 4.6 Consensus size: 12
92433352 GTACATGTTC
92433362 ATAAAATAAATAT
1 ATAAAAT-AATAT
92433375 ATAAAATAATAT
1 ATAAAATAATAT
*
92433387 ATAACACATGATAT
1 ATAA-A-ATAATAT
*
92433401 ATGCAATATATATAT
1 AT--AAAATA-ATAT
92433416 ATAAAAT
1 ATAAAAT
92433423 GAAATGAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
12 9 0.23
13 12 0.31
14 10 0.26
15 6 0.15
16 2 0.05
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAAAATAATAT
Found at i:92433969 original size:13 final size:13
Alignment explanation
Indices: 92433951--92433986 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
92433941 AGTAAGATAT
92433951 AATAATAATATAA
1 AATAATAATATAA
*
92433964 AATAATAATGTAA
1 AATAATAATATAA
92433977 AATAATAATA
1 AATAATAATA
92433987 ATTTGTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
AATAATAATATAA
Found at i:92433985 original size:32 final size:33
Alignment explanation
Indices: 92433949--92434039 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 33
92433939 CAAGTAAGAT
92433949 ATAATAATAATATAAAATAATAATG-TAAAAT-A
1 ATAATAATAATATAAAATAATAA-GATAAAATAA
* * *
92433981 ATAATAAT-TTGTGAAAA-AATAAGATATAATAA
1 ATAATAATAATAT-AAAATAATAAGATAAAATAA
* *
92434013 ATAATAATAATAT-ATATAATAAAATAA
1 ATAATAATAATATAAAATAATAAGATAA
92434040 TCTTATAATG
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
30 1 0.02
31 14 0.30
32 29 0.63
33 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (33 bp):
ATAATAATAATATAAAATAATAAGATAAAATAA
Found at i:92434024 original size:13 final size:13
Alignment explanation
Indices: 92433914--92434039 Score: 50
Period size: 13 Copynumber: 9.3 Consensus size: 13
92433904 AACAATATAT
92433914 ATAAATAAT--TA
1 ATAAATAATAATA
92433925 ATAAATATATAATACA
1 ATAAATA-ATAAT--A
92433941 AGTAAGAT-ATAATA
1 A-TAA-ATAATAATA
92433955 ATAATATAA-AATA
1 ATAA-ATAATAATA
*
92433968 ATAATGTAA-AATA
1 ATAA-ATAATAATA
**
92433981 AT-AATAATTTGTGA
1 ATAAATAA-TAAT-A
* *
92433995 AAAAATAAGATATA
1 ATAAATAATA-ATA
92434009 ATAAATAATAATA
1 ATAAATAATAATA
92434022 ATATATATAATAA-A
1 ATA-A-ATAATAATA
92434036 ATAA
1 ATAA
92434040 TCTTATAATG
Statistics
Matches: 89, Mismatches: 11, Indels: 28
0.70 0.09 0.22
Matches are distributed among these distances:
11 10 0.11
12 3 0.03
13 31 0.35
14 20 0.22
15 13 0.15
16 7 0.08
17 3 0.03
18 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.32
Consensus pattern (13 bp):
ATAAATAATAATA
Found at i:92440066 original size:21 final size:20
Alignment explanation
Indices: 92440030--92440076 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
92440020 CACACGATCG
*
92440030 TGTGGCTTCACACATGGCCA
1 TGTGGCTTCACACATGCCCA
* *
92440050 TGTGGCTTCCCCACATGCCCG
1 TGTGGCTT-CACACATGCCCA
92440071 TGTGGC
1 TGTGGC
92440077 CAGACTATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.13, C:0.34, G:0.28, T:0.26
Consensus pattern (20 bp):
TGTGGCTTCACACATGCCCA
Done.