Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 308 of 345
Found at i:92708486 original size:3 final size:3
Alignment explanation
Indices: 92708478--92708518 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
92708468 CTACTTCTTA
92708478 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
92708519 ACTCCTCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:92718909 original size:42 final size:42
Alignment explanation
Indices: 92718860--92718944 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
92718850 TAAGTTCGAC
*
92718860 GATTTAAACAAAAATCTTATCGAACTAACTATAATAAATTAA
1 GATTTAAACAAAAATCTTATCGAACTAAATATAATAAATTAA
* *
92718902 GATTTAAACAAAAATCTTGTCGGACTAAATATAATAAATTAA
1 GATTTAAACAAAAATCTTATCGAACTAAATATAATAAATTAA
92718944 G
1 G
92718945 TAATAAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.31
Consensus pattern (42 bp):
GATTTAAACAAAAATCTTATCGAACTAAATATAATAAATTAA
Found at i:92727499 original size:46 final size:45
Alignment explanation
Indices: 92727275--92727500 Score: 233
Period size: 46 Copynumber: 4.9 Consensus size: 45
92727265 TGGGGTAGGG
* *
92727275 TGCCGATGCCATGTCCCAGACATGGTTTTACACT-G-ACACATCTCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCA
* * *
92727320 CAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-A
* ** * *
92727367 AGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-A
* * *
92727413 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTCACATAAT-A
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA
92727460 TGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
92727501 CAAGTGACCC
Statistics
Matches: 152, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
44 9 0.06
45 15 0.10
46 74 0.49
47 31 0.20
48 22 0.14
49 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCA
Found at i:92728838 original size:3 final size:3
Alignment explanation
Indices: 92728830--92728876 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
92728820 AATAGAAAAC
92728830 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
92728877 CTCTTAATCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92729025 original size:15 final size:15
Alignment explanation
Indices: 92729005--92729038 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
92728995 AAACAATTAA
92729005 ATTTTTTAAAACTAT
1 ATTTTTTAAAACTAT
**
92729020 ATTTTTTAACTCTAT
1 ATTTTTTAAAACTAT
92729035 ATTT
1 ATTT
92729039 AATTTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTTTAAAACTAT
Found at i:92734346 original size:40 final size:40
Alignment explanation
Indices: 92734292--92734369 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
92734282 CGGATGTAAC
92734292 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
92734332 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATA
92734370 TTTTTTTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:92737039 original size:30 final size:30
Alignment explanation
Indices: 92737005--92737061 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
92736995 AAATTCACAT
* *
92737005 TAAAATATTTTTAAAAATTAAAAATATGAA
1 TAAAAAATTTATAAAAATTAAAAATATGAA
*
92737035 TAAAAAATTTATAAAAATTCAAAATAT
1 TAAAAAATTTATAAAAATTAAAAATAT
92737062 ATATATGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (30 bp):
TAAAAAATTTATAAAAATTAAAAATATGAA
Found at i:92737562 original size:23 final size:23
Alignment explanation
Indices: 92737519--92737562 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
92737509 TAACAAGCTT
*
92737519 TAATTTTAAGTTATTGGATTTAA
1 TAATTTTAAGTTATTGAATTTAA
*
92737542 TAATTTCTAGGTT-TTGAATTT
1 TAATTT-TAAGTTATTGAATTT
92737563 TTAATCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (23 bp):
TAATTTTAAGTTATTGAATTTAA
Found at i:92738280 original size:13 final size:13
Alignment explanation
Indices: 92738262--92738286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92738252 CTCCATTTTT
92738262 CAAAAAAAAAAAA
1 CAAAAAAAAAAAA
92738275 CAAAAAAAAAAA
1 CAAAAAAAAAAA
92738287 CCATGATTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:92738391 original size:20 final size:20
Alignment explanation
Indices: 92738366--92738414 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
92738356 TTTCAACATA
92738366 ATTTTTAATATATTTA-ATAT
1 ATTTTTAATA-ATTTATATAT
*
92738386 ATTTTTTAATAATTTATATTT
1 A-TTTTTAATAATTTATATAT
92738407 ATTTTTAA
1 ATTTTTAA
92738415 GATTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTTTAATAATTTATATAT
Found at i:92738393 original size:21 final size:21
Alignment explanation
Indices: 92738367--92738412 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
92738357 TTCAACATAA
92738367 TTTTTAATATATTTA-ATATAT
1 TTTTTAATA-ATTTATATATAT
*
92738388 TTTTTAATAATTTATATTTAT
1 TTTTTAATAATTTATATATAT
92738409 TTTT
1 TTTT
92738413 AAGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTAATAATTTATATATAT
Found at i:92739036 original size:3 final size:3
Alignment explanation
Indices: 92739028--92739070 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
92739018 AAGCAAAAAC
*
92739028 AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
92739071 TACTTTAGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:92739203 original size:18 final size:18
Alignment explanation
Indices: 92739168--92739222 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
92739158 TTTTAAAAAG
*
92739168 TATAAAT-TTTGGATATTT
1 TATAAATATTTTGA-ATTT
92739186 TATAAATATTTTGAATTT
1 TATAAATATTTTGAATTT
92739204 TGA-AAATTATTTTG-ATTT
1 T-ATAAA-TATTTTGAATTT
92739222 T
1 T
92739223 TTTTTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 20 0.61
19 13 0.39
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:92749211 original size:4 final size:4
Alignment explanation
Indices: 92749202--92749236 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
92749192 GAGCAAACGT
92749202 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
92749237 TAAAAAAGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:92761679 original size:25 final size:25
Alignment explanation
Indices: 92761645--92761693 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
92761635 TTAGAGACCA
*
92761645 TCTTGGAACAATCCAAAGTCTTGTG
1 TCTTAGAACAATCCAAAGTCTTGTG
*
92761670 TCTTAGAACAGTCCAAAGTCTTGT
1 TCTTAGAACAATCCAAAGTCTTGT
92761694 ATTAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (25 bp):
TCTTAGAACAATCCAAAGTCTTGTG
Found at i:92770738 original size:35 final size:35
Alignment explanation
Indices: 92770691--92770762 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
92770681 TACAAAAGAA
* * *
92770691 CACTTGATGCTAGAATCACCAACAATGTCGATAGC
1 CACTTGACGCTAGAATCACAAACAATGTCAATAGC
* **
92770726 CACTTGACGCTAGCATCACAAATGATGTCAATAGC
1 CACTTGACGCTAGAATCACAAACAATGTCAATAGC
92770761 CA
1 CA
92770763 TACTGGTAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (35 bp):
CACTTGACGCTAGAATCACAAACAATGTCAATAGC
Found at i:92776842 original size:15 final size:15
Alignment explanation
Indices: 92776824--92776854 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
92776814 AAAGAAAGAT
*
92776824 AAAAAAATAATAATA
1 AAAAAAAAAATAATA
92776839 AAAAAAAAAATAATA
1 AAAAAAAAAATAATA
92776854 A
1 A
92776855 TAAACTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
AAAAAAAAAATAATA
Found at i:92776845 original size:18 final size:18
Alignment explanation
Indices: 92776824--92776858 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
92776814 AAAGAAAGAT
92776824 AAAAAAATAATAATAAAA
1 AAAAAAATAATAATAAAA
92776842 AAAAAAATAATAATAAA
1 AAAAAAATAATAATAAA
92776859 CTCAATGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAAATAATAATAAAA
Found at i:92776960 original size:5 final size:6
Alignment explanation
Indices: 92776937--92776970 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
92776927 AAAAGAAGAA
92776937 AAAAAT AAAAAT AGCAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT A--AAAAT AAAAAT AAAAAT AA
92776971 CAAAAGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:92776960 original size:20 final size:20
Alignment explanation
Indices: 92776937--92776975 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
92776927 AAAAGAAGAA
*
92776937 AAAAATAAAAATAGCAAAAT
1 AAAAATAAAAATAACAAAAT
92776957 AAAAATAAAAATAACAAAA
1 AAAAATAAAAATAACAAAA
92776976 GTATATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (20 bp):
AAAAATAAAAATAACAAAAT
Found at i:92777002 original size:17 final size:16
Alignment explanation
Indices: 92776935--92777008 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 16
92776925 AAAAAAGAAG
92776935 AAAAAAATAAAA-AT-
1 AAAAAAATAAAATATA
**
92776949 AGCAAAATAAAA-ATA
1 AAAAAAATAAAATATA
* *
92776964 AAAATAACAAAAGTATA
1 AAAAAAATAAAA-TATA
*
92776981 TAAAAAATTAAAATATA
1 -AAAAAAATAAAATATA
92776998 AAAAAATATAA
1 AAAAAA-ATAA
92777009 GTATAAGAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
14 12 0.27
15 8 0.18
16 6 0.13
17 10 0.22
18 9 0.20
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAAAATAAAATATA
Found at i:92777006 original size:25 final size:25
Alignment explanation
Indices: 92776957--92777008 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
92776947 ATAGCAAAAT
92776957 AAAAATAAAAATAACAAAAGTATATA
1 AAAAATAAAAATAACAAAAG-ATATA
92776983 AAAAATTAAAATATAA-AAAA-ATATA
1 AAAAA-TAAAA-ATAACAAAAGATATA
92777008 A
1 A
92777009 GTATAAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 6 0.25
26 5 0.21
27 9 0.38
28 4 0.17
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (25 bp):
AAAAATAAAAATAACAAAAGATATA
Found at i:92777013 original size:16 final size:16
Alignment explanation
Indices: 92776973--92777014 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
92776963 AAAAATAACA
92776973 AAAGTATATAAAAAATT
1 AAAGTATA-AAAAAATT
*
92776990 AAAATATAAAAAAA-T
1 AAAGTATAAAAAAATT
92777005 ATAAGTATAA
1 A-AAGTATAA
92777015 GAATAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 13 0.59
17 7 0.32
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AAAGTATAAAAAAATT
Found at i:92777089 original size:27 final size:26
Alignment explanation
Indices: 92777042--92777094 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
92777032 ATTAATTAGT
* *
92777042 AAAATAAAATAAATAATATAACAATTA
1 AAAATAAAATAAACAAAATAA-AATTA
92777069 AAAAT-AAATAAAACAAAATAAAATTA
1 AAAATAAAAT-AAACAAAATAAAATTA
92777095 GGGTGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.23
Consensus pattern (26 bp):
AAAATAAAATAAACAAAATAAAATTA
Found at i:92780926 original size:20 final size:20
Alignment explanation
Indices: 92780901--92780947 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
92780891 ATTCCCTTAT
92780901 TAGATTTGACTCTAATTCAG
1 TAGATTTGACTCTAATTCAG
92780921 TAGATTTGACTCTAATTCAG
1 TAGATTTGACTCTAATTCAG
92780941 TAGATTT
1 TAGATTT
92780948 ATGTCATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
TAGATTTGACTCTAATTCAG
Found at i:92784541 original size:26 final size:26
Alignment explanation
Indices: 92784504--92784587 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
92784494 TGATACAAAT
* *
92784504 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
92784530 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
92784556 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
92784582 TGATAA
1 TGATAA
92784588 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:92790851 original size:131 final size:131
Alignment explanation
Indices: 92790677--92791172 Score: 489
Period size: 131 Copynumber: 3.8 Consensus size: 131
92790667 ATTAGGAATT
** * *
92790677 CTTTAAAACGAAGGCGATATTCGATCCTTGGTAATTCGTGGAATCGTGCCCTAAT-GTGTTGGGT
1 CTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCT-ATCGTGCTGGGT
** * * *
92790741 TGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTTACTTATGTCCTTTAAAA
64 TGCAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTTACTCATGTCTTTTAAAA
92790806 ATC
129 ATC
* * * * *
92790809 CCTT-AAACGAAGGCGATATGCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGCTGGGTT
1 CTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTT
* * * * * * * * * *
92790873 GCAATTTCTCGTCTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATATCTTTTAAAGA
65 GCAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTTACTCATGTCTTTTAAAAA
92790938 TC
130 TC
* * ** ** * *
92790940 CTTTAAAACGAAGGCAATACTCGGGGTTTAACAATTCAGGAATCATGCCCTATCGTGCTGGGTTG
1 CTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTG
** * * * *
92791005 TGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAG-GTTTTCACTCATGT-TTATTAAAA
66 CAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTT-ACTCATGTCTT-TTAAAA
92791068 A-C
129 ATC
* * *
92791070 CTTTCAAAACGAAGGCGATGTTCGATGTTTGGCAATTTGAGAATCGTGCCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTT
** * * *
92791135 GCGCTTTTTCATTTGTTCAAAACAATCGAAGATCCCTT
65 GCAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTT
92791173 CGGAATTTCA
Statistics
Matches: 293, Mismatches: 66, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
130 11 0.04
131 255 0.87
132 27 0.09
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (131 bp):
CTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTG
CAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTTACTCATGTCTTTTAAAAAT
C
Found at i:92792293 original size:55 final size:56
Alignment explanation
Indices: 92792181--92792293 Score: 158
Period size: 55 Copynumber: 2.0 Consensus size: 56
92792171 TTTAATAATG
* * *
92792181 AATATTATTAAATTATATATTATTTTATTAAATTGTATTTAATAATAATTATGTTAA
1 AATATGATTAAATTATATATTA-TTTATTAAATTATATTTAATAATAATTATATTAA
*
92792238 AATATGATTAAATTATTTATTA-TTATTAAATTATATTTAATAATAATCT-TATTAA
1 AATATGATTAAATTATATATTATTTATTAAATTATATTTAATAATAAT-TATATTAA
92792293 A
1 A
92792294 GTTTAATAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 30 0.59
56 1 0.02
57 20 0.39
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (56 bp):
AATATGATTAAATTATATATTATTTATTAAATTATATTTAATAATAATTATATTAA
Found at i:92793547 original size:3 final size:3
Alignment explanation
Indices: 92793539--92793582 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
92793529 ACTATATGCC
*
92793539 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
92793583 ATGGCTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:92793595 original size:3 final size:3
Alignment explanation
Indices: 92793589--92793629 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
92793579 ATTAATGGCT
92793589 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
92793630 TCCTTAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92795382 original size:3 final size:3
Alignment explanation
Indices: 92795374--92795422 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
92795364 TTTGTCATAT
92795374 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92795422 A
1 A
92795423 GGCTTTGGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92796051 original size:48 final size:48
Alignment explanation
Indices: 92795993--92796088 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
92795983 ATACCATTTG
92795993 TATTGAGTTTGACCCACATAGAAATAGGTAGTAACCAAATTGAAACCC
1 TATTGAGTTTGACCCACATAGAAATAGGTAGTAACCAAATTGAAACCC
92796041 TATTGAGTTTGACCCACATAGAAATAGGTAGTAACCAAATTGAAACCC
1 TATTGAGTTTGACCCACATAGAAATAGGTAGTAACCAAATTGAAACCC
92796089 CTTCTCCCAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (48 bp):
TATTGAGTTTGACCCACATAGAAATAGGTAGTAACCAAATTGAAACCC
Found at i:92796791 original size:52 final size:52
Alignment explanation
Indices: 92796733--92796836 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
92796723 ATAACTACTC
* * * * *
92796733 CCACTAATTACATTGAAAATTACATAATTTATCTTATACATATTGTGAAGCT
1 CCACTAATTACATAGAAAATTACAAAACTTATCTTACACACATTGTGAAGCT
*
92796785 CCACTAATTACATAGAAAATTACAAAACTTATCTTGCACACATTGTGAAGCT
1 CCACTAATTACATAGAAAATTACAAAACTTATCTTACACACATTGTGAAGCT
92796837 AACTTATCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (52 bp):
CCACTAATTACATAGAAAATTACAAAACTTATCTTACACACATTGTGAAGCT
Found at i:92805116 original size:7 final size:7
Alignment explanation
Indices: 92805106--92805134 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
92805096 TATTATGTTT
92805106 TATTATA
1 TATTATA
92805113 TATTATA
1 TATTATA
92805120 TATTATA
1 TATTATA
92805127 TA-TATA
1 TATTATA
92805133 TA
1 TA
92805135 GTAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TATTATA
Found at i:92805888 original size:20 final size:22
Alignment explanation
Indices: 92805859--92805898 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
92805849 ATTGATTTAT
*
92805859 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
92805879 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
92805899 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:92807674 original size:8 final size:8
Alignment explanation
Indices: 92807661--92807700 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
92807651 CTAGATCGGT
92807661 AAAAGCCG
1 AAAAGCCG
92807669 AAAAGCCG
1 AAAAGCCG
92807677 AAAAGCCG
1 AAAAGCCG
*
92807685 AAAAGTCG
1 AAAAGCCG
92807693 AAAAGCCG
1 AAAAGCCG
92807701 GCATTTGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.50, C:0.23, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:92808341 original size:20 final size:20
Alignment explanation
Indices: 92808311--92808355 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
92808301 CTGTTTTATT
92808311 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
92808330 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
92808350 ATGGGC
1 ATGGGC
92808356 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:92816037 original size:29 final size:29
Alignment explanation
Indices: 92815983--92816039 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
92815973 TATTATTGTC
* **
92815983 ATTATTTTATTATTTTATAAATTAAATTG
1 ATTATATTATTATACTATAAATTAAATTG
92816012 ATTATATTATTATACTATGAAA-TAAATT
1 ATTATATTATTATACTAT-AAATTAAATT
92816040 AAGAAAAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATACTATAAATTAAATTG
Found at i:92816147 original size:33 final size:32
Alignment explanation
Indices: 92816098--92816171 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
92816088 TTAAATGAGT
92816098 ATATTTGTATTATTTA-TATATAATTAATAAAAAG
1 ATATTT-TATTATTTATTAT-TAATTAAT-AAAAG
*
92816132 ATATTTTATTATTTATTATTAATTAGTAAAAG
1 ATATTTTATTATTTATTATTAATTAATAAAAG
92816164 AT-TTTTAT
1 ATATTTTAT
92816172 ATGATAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
31 6 0.16
32 7 0.18
33 16 0.42
34 9 0.24
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (32 bp):
ATATTTTATTATTTATTATTAATTAATAAAAG
Found at i:92816153 original size:29 final size:30
Alignment explanation
Indices: 92816111--92816171 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
92816101 TTTGTATTAT
92816111 TTATATATAATTAA-TA-AAAAGATATTTTA
1 TTATATATAATTAATTAGAAAAGAT-TTTTA
* *
92816140 TTATTTATTATTAATTAGTAAAAGATTTTTA
1 TTATATATAATTAATTAG-AAAAGATTTTTA
92816171 T
1 T
92816172 ATGATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.44
30 2 0.07
31 6 0.22
32 7 0.26
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (30 bp):
TTATATATAATTAATTAGAAAAGATTTTTA
Found at i:92816280 original size:18 final size:18
Alignment explanation
Indices: 92816257--92816306 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
92816247 TGTAATATTT
*
92816257 ATATTTGTTATTA-AATA
1 ATATTTATTATTATAATA
92816274 GATATTTATTATTATAATA
1 -ATATTTATTATTATAATA
92816293 ATATTTATTATTAT
1 ATATTTATTATTAT
92816307 TATTTAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
ATATTTATTATTATAATA
Found at i:92816295 original size:42 final size:43
Alignment explanation
Indices: 92816249--92816330 Score: 114
Period size: 42 Copynumber: 1.9 Consensus size: 43
92816239 TGTACATTTG
*
92816249 TAATATTTA-TATTTGTTATTAAATAGATATT-TATTATTATAA
1 TAATATTTATTA-TTATTATTAAATAGATATTATATTATTATAA
* *
92816291 TAATATTTATTATTATTATTTAATTGATATTATATTATTA
1 TAATATTTATTATTATTATTAAATAGATATTATATTATTA
92816331 GATCAACGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 25 0.71
43 10 0.29
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (43 bp):
TAATATTTATTATTATTATTAAATAGATATTATATTATTATAA
Found at i:92816515 original size:22 final size:22
Alignment explanation
Indices: 92816481--92816527 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 22
92816471 GTAATATAAT
*
92816481 AAACTAAATAAAAATAAAAG-ATA
1 AAACTAAA-CAAAAT-AAAGCATA
92816504 AAAC-AAACAAAATAAAGCATA
1 AAACTAAACAAAATAAAGCATA
92816525 AAA
1 AAA
92816528 AAGAAACAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 4 0.18
21 11 0.50
22 3 0.14
23 4 0.18
ACGTcount: A:0.74, C:0.09, G:0.04, T:0.13
Consensus pattern (22 bp):
AAACTAAACAAAATAAAGCATA
Found at i:92816988 original size:12 final size:11
Alignment explanation
Indices: 92816968--92817019 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
92816958 GTTAAGATTA
*
92816968 AAATTGAAATT
1 AAATAGAAATT
92816979 AAAGTAGAAATT
1 AAA-TAGAAATT
*
92816991 GAATAGAAATT
1 AAATAGAAATT
*
92817002 GAATAAGAAATTT
1 AAAT-AGAAA-TT
92817015 AAATA
1 AAATA
92817020 TTAAATGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 15 0.43
12 15 0.43
13 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (11 bp):
AAATAGAAATT
Found at i:92816999 original size:11 final size:11
Alignment explanation
Indices: 92816973--92817013 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
92816963 GATTAAAATT
*
92816973 GAAATTAAAGTA
1 GAAATTGAA-TA
92816985 GAAATTGAATA
1 GAAATTGAATA
92816996 GAAATTGAATAA
1 GAAATTGAAT-A
92817008 GAAATT
1 GAAATT
92817014 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:92817731 original size:44 final size:44
Alignment explanation
Indices: 92817682--92817771 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
92817672 TCAGGGATAT
* *
92817682 TTCGACCT-TGAGTCAATGAGGCACTATAAGTGTCATACTGTTAC
1 TTCGA-CTATGAGTCAATGAGGCACCATAAGTGTCATACTGCTAC
* **
92817726 TTCGACTATGAGTCGATGAGGCACCATGTGTGTCATACTGCTAC
1 TTCGACTATGAGTCAATGAGGCACCATAAGTGTCATACTGCTAC
92817770 TT
1 TT
92817772 TACATCAGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (44 bp):
TTCGACTATGAGTCAATGAGGCACCATAAGTGTCATACTGCTAC
Found at i:92831171 original size:42 final size:42
Alignment explanation
Indices: 92831105--92831186 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
92831095 GTCAATTTTT
* * * *
92831105 AAAACGCACTAAGCTAAATGTGTTTTTAGCGTACTTTGCAAA
1 AAAACGCACTAAGCTAAATATGTTTTCAGCATACGTTGCAAA
* *
92831147 AAAACGCATTAAGCTAGATATGTTTTCAGCATACGTTGCA
1 AAAACGCACTAAGCTAAATATGTTTTCAGCATACGTTGCA
92831187 GGAAAGAGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (42 bp):
AAAACGCACTAAGCTAAATATGTTTTCAGCATACGTTGCAAA
Found at i:92839270 original size:132 final size:131
Alignment explanation
Indices: 92839028--92839343 Score: 409
Period size: 132 Copynumber: 2.4 Consensus size: 131
92839018 TAAGTATTCA
* * * *
92839028 TTTAAAAATCCTTTAAAACGAAGACGAGATTCGATATTTGACAATTCGCAGAATAGTGCCTAACG
1 TTTAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGACAATTCGCAGAATAGTGCCTAACG
* * * *
92839093 TGTTGGGCTGCAATTTCACGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGCC
66 TGCTGGGCTGCAATCTCACGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCC
92839158 T
131 T
* * * *
92839159 TTTAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGGCAATTTGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGACAATTCGCAGAATAGTG-CCTAAC
* * * *
92839224 GTGCTGGGTTGCAATCTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTGCACTCATGT
65 GTGCTGGGCTGCAATCTCACGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGC
92839289 CT
130 CT
* * * * ***
92839291 TCTAAAAATTATTTAAAACGAAGGCAATATTCGGCGTTTGACAATTCG-AGAAT
1 TTTAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGACAATTCGCAGAAT
92839344 CATGCCCTAT
Statistics
Matches: 158, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
131 54 0.34
132 104 0.66
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGACAATTCGCAGAATAGTGCCTAACG
TGCTGGGCTGCAATCTCACGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCC
T
Found at i:92839413 original size:125 final size:128
Alignment explanation
Indices: 92839096--92839396 Score: 349
Period size: 132 Copynumber: 2.3 Consensus size: 128
92839086 CCTAACGTGT
* * * *
92839096 TGGGCTGCAATTTCACGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGCCTTT
1 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTCTTC
* * * * *
92839161 TAAAAATTCTTTAAAACGAAGGCGATATGCGATATTTGGCAATTTGCGGAATCGTGCCCTAACGT
66 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTTGCGGAATCATGCCCTAA---
92839226 GC
128 -C
* * * *
92839228 TGGGTTGCAATCTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTGCACTCATGTCTTC
1 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTCTTC
* * *
92839293 TAAAAATTATTTAAAACGAAGGCAATATTCGGCGTTTGACAA-TT-CGAGAATCATGCCCT-A-
66 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTTGCG-GAATCATGCCCTAAC
** * *
92839353 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT
1 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTT
92839397 TAGGTTTTCA
Statistics
Matches: 145, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
125 37 0.26
130 3 0.02
131 13 0.09
132 92 0.63
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (128 bp):
TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTCTTC
TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTTGCGGAATCATGCCCTAAC
Found at i:92839648 original size:132 final size:130
Alignment explanation
Indices: 92839362--92839671 Score: 322
Period size: 132 Copynumber: 2.4 Consensus size: 130
92839352 ATGGGTTGTG
* * * * *
92839362 ATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGG-TTTTCACTCATGTTTATTAAAAACT
1 ATTTCTCGTTTGGTCAAAACAATCGAATA-TCCCTTAGGAATTTCACTCACGTTTATTAAAAACC
* * * *
92839426 TTTCAAAACAAAAGATGTTCGATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGTTGGGTTGCG
65 TTTCAAAACAAAAGATGTTCGATGTTTGGCGATTTGAGAATAGTACCCTATCGTGCTGGGTAGCG
*
92839491 C
130 A
* * * * * * * * *
92839492 TTTTTTCATTTGGTCTAAACAATCGAAGATCCCTTGGGAATTTCATTCACGTTTTTTAAAAGCCC
1 ATTTCTCGTTTGGTCAAAACAATCGAATATCCCTTAGGAATTTCACTCACGTTTATTAAAA-ACC
* *
92839557 TTT-AAAACGAAAGAAGTGTTCGATGTTTGGC-AGTTTGGGGAATAGTACCCTATCGTGCTGGGT
65 TTTCAAAACAAAAG-A-TGTTCGATGTTTGGCGA-TTT-GAGAATAGTACCCTATCGTGCTGGGT
92839620 AGC-A
126 AGCGA
* * *
92839624 ATTTCTCGTTTGGTCAAAATAATCGAATATCTCTTCGGAATTTCACTC
1 ATTTCTCGTTTGGTCAAAACAATCGAATATCCCTTAGGAATTTCACTC
92839672 GTATTTTCTA
Statistics
Matches: 144, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
129 7 0.05
130 50 0.35
131 6 0.04
132 57 0.40
133 24 0.17
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (130 bp):
ATTTCTCGTTTGGTCAAAACAATCGAATATCCCTTAGGAATTTCACTCACGTTTATTAAAAACCT
TTCAAAACAAAAGATGTTCGATGTTTGGCGATTTGAGAATAGTACCCTATCGTGCTGGGTAGCGA
Found at i:92851486 original size:132 final size:132
Alignment explanation
Indices: 92851281--92851531 Score: 389
Period size: 132 Copynumber: 1.9 Consensus size: 132
92851271 ACAGATCCTG
* * * *
92851281 TTTCCCTAAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGCAGTGA
1 TTTCCCGAAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTAGGCTTCCTGAAGTTGCAGTGA
* * *
92851346 AGCAGATTTA-AGCCACCAACCCAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
66 AGCAGATTTACA-CCACCAACCCAGCTCCCTAAAGTTGCAGCGGAGTAGGCTGAAATTTTAGATC
92851410 TTT
130 TTT
*
92851413 TTTCCCGAAAGTTGCAGTGGAA-CAGATCAAAGACGATGAATCTAGTCTTCCTGAAGTTGCAGTG
1 TTTCCCGAAAGTTGCAGT-GAAGCAGATCAAAGACGATGAATCTAGGCTTCCTGAAGTTGCAGTG
*
92851477 AAGCAGATTTACACCACCAACCTAGCTCCCTAAAGTTGCAGCGGAGTAGGCTGAA
65 AAGCAGATTTACACCACCAACCCAGCTCCCTAAAGTTGCAGCGGAGTAGGCTGAA
92851532 GATTGCAAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
132 104 0.96
133 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (132 bp):
TTTCCCGAAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTAGGCTTCCTGAAGTTGCAGTGA
AGCAGATTTACACCACCAACCCAGCTCCCTAAAGTTGCAGCGGAGTAGGCTGAAATTTTAGATCT
TT
Found at i:92853714 original size:12 final size:12
Alignment explanation
Indices: 92853697--92853722 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92853687 CTTTTGAATT
92853697 TATATACATATA
1 TATATACATATA
92853709 TATATACATATA
1 TATATACATATA
92853721 TA
1 TA
92853723 CTAATACGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATACATATA
Found at i:92854878 original size:132 final size:131
Alignment explanation
Indices: 92854632--92854919 Score: 389
Period size: 132 Copynumber: 2.2 Consensus size: 131
92854622 TAAGTATTCA
* * *
92854632 TTTAAAAATCCTTTAAAACGAAGACGAGATTCGATATTTGACAATTCGCAGAATAGTGCCTAACG
1 TTTAAAAATTCTTTAAAACGAAGGCGAGATGCGATATTTGACAATTCGCAGAATAGTGCCTAACG
* * * *
92854697 TGTTGGGCTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGCC
66 TGCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCC
92854762 T
131 T
* * * *
92854763 TTTAAAAATTCTTTAAAACGAAGGCGATG-TGCGATATTTGGCAATTTGCGGAATCGTGCCCTAA
1 TTTAAAAATTCTTTAAAACGAAGGCGA-GATGCGATATTTGACAATTCGCAGAATAGTG-CCTAA
* * * *
92854827 TGTGCTGGGTTGCAATCTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTGCACTCATG
64 CGTGCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATG
*
92854892 TCT
129 CCT
* *
92854895 TCTAAAAATTATTTAAAACGAAGGC
1 TTTAAAAATTCTTTAAAACGAAGGC
92854920 AATATTCGGC
Statistics
Matches: 137, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
131 49 0.36
132 88 0.64
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGGCGAGATGCGATATTTGACAATTCGCAGAATAGTGCCTAACG
TGCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCC
T
Found at i:92854940 original size:132 final size:132
Alignment explanation
Indices: 92854634--92854959 Score: 368
Period size: 132 Copynumber: 2.5 Consensus size: 132
92854624 AGTATTCATT
** * * * * * * * *
92854634 TAAAAATCCTTTAAAACGAAGACGAGATTCGATATTTGACAATTCGCAGAATAGTG-CCTAACGT
1 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCGTGCCCTAATGT
* * * *
92854698 GTTGGGCTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGCCT
66 GCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCCT
*
92854763 TT
131 TC
* * * * * *
92854765 TAAAAATTCTTTAAAACGAAGGCGATGTGCGATATTTGGCAATTTGCGGAATCGTGCCCTAATGT
1 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCGTGCCCTAATGT
* * * *
92854830 GCTGGGTTGCAATCTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTGCACTCATGTCT
66 GCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCCT
92854895 TC
131 TC
* * * * *
92854897 TAAAAATTATTTAAAACGAAGGCAATATTCGGCGTTTGACAATTCG-GGAATCATGCCCCAATG
1 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCGTGCCCTAATG
92854960 GGTTGTGATT
Statistics
Matches: 164, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
131 62 0.38
132 102 0.62
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (132 bp):
TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCGTGCCCTAATGT
GCTGGGCTGCAATCTCGCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTGCACTCATGCCT
TC
Found at i:92855027 original size:126 final size:127
Alignment explanation
Indices: 92854700--92855028 Score: 338
Period size: 132 Copynumber: 2.6 Consensus size: 127
92854690 CCTAACGTGT
* * *
92854700 TGGGCTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGCCTTT
1 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG-TTTT
* * * * * * * *
92854765 TAAAAATTCTTTAAAACGAAGGCGATGTGCGATATTTGGCAATTTGCGGAATCGTGCCCTAATGT
65 TAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCATGCCCCAA---
92854830 G
127 G
* * * *
92854831 CTGGGTTGCAATCTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTGCACTCATGTCTT
1 -TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGT-TT
* * * *
92854896 CTAAAAATTATTTAAAACGAAGGCAATATTCGGCGTTTGACAATTCG-GGAATCATGCCCCAA-
64 TTAAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCATGCCCCAAG
** * * * ***
92854958 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTAT
1 TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTT-T
92855023 TAAAAA
65 TAAAAA
92855029 CTTTTCAAAA
Statistics
Matches: 163, Mismatches: 32, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
125 2 0.01
126 55 0.34
131 13 0.08
132 93 0.57
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (127 bp):
TGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTTTT
AAAAATTATTTAAAACGAAGGCAATATGCGACATTTGACAATTCGCGGAATCATGCCCCAAG
Found at i:92856139 original size:46 final size:46
Alignment explanation
Indices: 92856066--92856330 Score: 206
Period size: 46 Copynumber: 5.7 Consensus size: 46
92856056 TGGGTATGGT
*
92856066 GCCGATGTCATATCCCAGACATTGTCTTACACTGCTCAT-ATCTCAA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGCTCATCATCTCAAG
*
92856112 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTG-CTCATCATCTCA-AG
* * * *
92856160 GCCGACGCATGTCCTAGACATGTCTTACACTGGCTTA-CGTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GCTCATCATCTCAAG
* * * * *
92856206 GCCGATGCATGTCCCAGACATATCTTACCCTACCTC-TCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GCTCATCATCTCAAG
* * *
92856252 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCCCATAATGT---G
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACT-GCT--CATCATCTCAAG
* *
92856300 GCTGATACATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
92856331 AGCCCACACA
Statistics
Matches: 179, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 103 0.58
47 49 0.27
48 21 0.12
50 1 0.01
51 3 0.02
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGCTCATCATCTCAAG
Found at i:92856226 original size:93 final size:94
Alignment explanation
Indices: 92856078--92856289 Score: 238
Period size: 93 Copynumber: 2.3 Consensus size: 94
92856068 CGATGTCATA
* * * *
92856078 TCCCAGACATTGTCTTACACT-GCTCATATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTAC
1 TCCCAGACACTGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAGACAT-ATCTTAC
92856142 ACTGA-CTATCATCTC-ATAGCCGACG-CATG
65 ACT-ACCTATCATCTCAAT-GCCGACGCCATG
* * *
92856171 TCCTAGACA-TGTCTTACACTGGCTTACGTCTCAAGGCCGATG-CATGTCCCAGACATATCTTAC
1 TCCCAGACACTGTCTTACACTGGCTCACATCTCAA-GCCGATGCCATGTCCCAGACATATCTTAC
* * * *
92856234 CCTACCTCTCGTCTCAATGCCGATGCCATG
65 ACTACCTATCATCTCAATGCCGACGCCATG
*
92856264 TCCCAGACACGGTCTTACACTGGCTC
1 TCCCAGACACTGTCTTACACTGGCTC
92856290 CCATAATGTG
Statistics
Matches: 100, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.01
92 33 0.33
93 46 0.46
94 20 0.20
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (94 bp):
TCCCAGACACTGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAGACATATCTTACA
CTACCTATCATCTCAATGCCGACGCCATG
Found at i:92866234 original size:42 final size:42
Alignment explanation
Indices: 92866164--92866276 Score: 102
Period size: 42 Copynumber: 2.7 Consensus size: 42
92866154 TTTAGCTTTC
* * * *
92866164 ATGAGCTTTTGTTT-ACCTCATATAAGTTTTCATTCAGCTCTT
1 ATGAGCTTCTGTTTAACC-CTTATGAGTTTTCATTCAACTCTT
* **
92866206 TTGAGCTTCTGTTTAACCCTTATGAGTTTTTGTTCAACTCTT
1 ATGAGCTTCTGTTTAACCCTTATGAGTTTTCATTCAACTCTT
* * * * *
92866248 AAGAGCATCCGTTCAACCCTTATGGGTTT
1 ATGAGCTTCTGTTTAACCCTTATGAGTTT
92866277 CTTTTTAGCT
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 54 0.95
43 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.44
Consensus pattern (42 bp):
ATGAGCTTCTGTTTAACCCTTATGAGTTTTCATTCAACTCTT
Found at i:92867452 original size:37 final size:37
Alignment explanation
Indices: 92867399--92867501 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
92867389 CGAATAGTCC
* *
92867399 CCACACGTAGTTATCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
92867436 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
92867473 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
92867502 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:92867700 original size:48 final size:48
Alignment explanation
Indices: 92867642--92868177 Score: 901
Period size: 48 Copynumber: 11.0 Consensus size: 48
92867632 ATATACACAC
* *
92867642 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
92867690 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
92867738 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
92867788 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
92867836 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
92867884 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
92867932 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATGTACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
92867982 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
92868030 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
92868080 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
92868128 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
92868176 AT
1 AT
92868178 ATTTATCTTG
Statistics
Matches: 464, Mismatches: 18, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
48 327 0.70
50 137 0.30
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:92867801 original size:98 final size:98
Alignment explanation
Indices: 92867651--92868177 Score: 927
Period size: 98 Copynumber: 5.4 Consensus size: 98
92867641 CATCTCCTAC
*
92867651 ATATTTCACACTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
92867716 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
92867749 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
92867814 TTCGGCTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
92867845 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
92867910 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
92867943 ATATTTCACATTAGCCATTCGGCTTTACCACATGTACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
92868008 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
92868041 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
92868106 TTCGGCTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
92868137 ATATTTCACACTAGCCATTCGGCTTTACCACACATATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
92868178 ATTTATCTTG
Statistics
Matches: 412, Mismatches: 15, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
96 134 0.33
98 278 0.67
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:92867822 original size:146 final size:146
Alignment explanation
Indices: 92867642--92868177 Score: 959
Period size: 146 Copynumber: 3.7 Consensus size: 146
92867632 ATATACACAC
* * *
92867642 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
92867707 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
92867772 TTTACCACATATACAT
131 TTTACCACATATACAT
92867788 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
92867853 CACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACACTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
92867916 TTTACCACATATACAT
131 TTTACCACATATACAT
* *
92867932 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATGTACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
92867997 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
92868062 GCTTTACCACATATACAT
129 GCTTTACCACATATACAT
92868080 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
92868145 CACTAGCCATTCGGCTTTACCACACATATATAT
66 CACTAGCCATTCGGCTTTACCACATATACATAT
92868178 ATTTATCTTG
Statistics
Matches: 373, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
144 46 0.12
146 281 0.75
148 46 0.12
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (146 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:92869377 original size:2 final size:2
Alignment explanation
Indices: 92869340--92869368 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92869330 TACATAAGGC
92869340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92869369 CCTATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92875053 original size:20 final size:20
Alignment explanation
Indices: 92875025--92875075 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
92875015 AAATTTGTGA
92875025 ATTTG-TAGCAAAATGTTTG
1 ATTTGTTAGCAAAATGTTTG
92875044 ATTTGTTAGCAAAATGTTTG
1 ATTTGTTAGCAAAATGTTTG
*
92875064 ATTTGTCAGCAA
1 ATTTGTTAGCAA
92875076 GTGAAAGCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 5 0.17
20 25 0.83
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTTGTTAGCAAAATGTTTG
Found at i:92882589 original size:29 final size:29
Alignment explanation
Indices: 92882545--92882601 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
92882535 TTATGGAAGA
* * * *
92882545 GATGGAGAACTTGTTCGTTGAGAGTTCGC
1 GATGAAGAACTCGTTCATTGAGAATTCGC
92882574 GATGAAGAACTCGTTCATTGAGAATTCG
1 GATGAAGAACTCGTTCATTGAGAATTCG
92882602 TATCAAGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
GATGAAGAACTCGTTCATTGAGAATTCGC
Found at i:92883452 original size:32 final size:32
Alignment explanation
Indices: 92883416--92883480 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
92883406 TGTATGCATT
92883416 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
92883448 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
92883480 T
1 T
92883481 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:92888209 original size:2 final size:2
Alignment explanation
Indices: 92888202--92888231 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
92888192 ATTAAGTTAT
92888202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92888232 AAGTAAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92890449 original size:46 final size:46
Alignment explanation
Indices: 92890397--92890623 Score: 382
Period size: 46 Copynumber: 4.9 Consensus size: 46
92890387 GTGCTCTCTA
92890397 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
92890443 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
92890489 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * *
92890535 ATATGAAATATGTAAAACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * **
92890581 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
92890624 ATGACAGAAA
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 171 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:92890629 original size:46 final size:46
Alignment explanation
Indices: 92890409--92890676 Score: 308
Period size: 46 Copynumber: 5.7 Consensus size: 46
92890399 ATGAAATGTG
* * **
92890409 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAAGAA
* * **
92890455 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAAGAA
92890501 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATATG--
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAA-A-GAA
* * *
92890547 TAAAACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAAGAA
*
92890593 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAA-G-A--A
* * * *
92890642 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 -TAAGACCATGGTTGAAAGATACCATGGCAACATG
92890677 TCAAAGATAA
Statistics
Matches: 202, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
44 1 0.00
45 6 0.03
46 162 0.80
47 1 0.00
48 1 0.00
49 1 0.00
50 30 0.15
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAAAGAA
Found at i:92894925 original size:93 final size:93
Alignment explanation
Indices: 92894813--92894984 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92894803 GCCCATAAGT
* *
92894813 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92894878 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92894906 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92894971 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
92894985 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92894980 original size:46 final size:46
Alignment explanation
Indices: 92894805--92894980 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92894795 TGTAACCCGC
* * *
92894805 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
92894851 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
92894901 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
92894944 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92894981 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:92897384 original size:30 final size:30
Alignment explanation
Indices: 92897340--92897428 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
92897330 CAAAGATAAC
92897340 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
92897369 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
92897399 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
92897429 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:92897388 original size:15 final size:15
Alignment explanation
Indices: 92897340--92897419 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
92897330 CAAAGATAAC
*
92897340 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
92897354 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
92897369 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
92897384 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92897399 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92897414 AAGAAA
1 AAGAAA
92897420 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92897428 original size:15 final size:15
Alignment explanation
Indices: 92897351--92897428 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
92897341 AGAAAACCGA
92897351 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
92897366 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
92897380 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
92897395 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92897411 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92897426 ATA
1 ATA
92897429 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92900492 original size:93 final size:93
Alignment explanation
Indices: 92900380--92900551 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92900370 GCCCATAAGT
* *
92900380 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92900445 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
92900473 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92900538 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
92900552 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92900547 original size:46 final size:46
Alignment explanation
Indices: 92900372--92900547 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
92900362 TGTAACCCGC
* * *
92900372 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
92900418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
92900468 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
92900511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92900548 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:92906774 original size:17 final size:15
Alignment explanation
Indices: 92906752--92906785 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
92906742 TCAACACTGC
92906752 TTTTCTTTTCTTTTCTT
1 TTTTCTTTT-TTTT-TT
92906769 TTTTCTTTTTTTTTT
1 TTTTCTTTTTTTTTT
92906784 TT
1 TT
92906786 GCTCTCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTCTTTTTTTTTT
Found at i:92918417 original size:22 final size:22
Alignment explanation
Indices: 92918392--92918435 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
92918382 AAAAGAATGA
*
92918392 CTATTCCAATGGAGGAATTTTT
1 CTATTCCAATGGAGCAATTTTT
92918414 CTATTCCAATGGAGCAATTTTT
1 CTATTCCAATGGAGCAATTTTT
92918436 TGCCTGTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (22 bp):
CTATTCCAATGGAGCAATTTTT
Found at i:92922387 original size:27 final size:27
Alignment explanation
Indices: 92922347--92922426 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
92922337 ACACGCTAGA
* * *
92922347 AAATGGAAGCCTTTGTGACAATTTATG
1 AAATGGAAGTCTTTGTGGCAATCTATG
*
92922374 AAATGGAAGTCTTTATGGCAATCTATG
1 AAATGGAAGTCTTTGTGGCAATCTATG
*
92922401 AAATGGAAGTTTTTGTGGCAATCTAT
1 AAATGGAAGTCTTTGTGGCAATCTAT
92922427 TAGATAAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (27 bp):
AAATGGAAGTCTTTGTGGCAATCTATG
Found at i:92922446 original size:27 final size:27
Alignment explanation
Indices: 92922353--92922446 Score: 71
Period size: 27 Copynumber: 3.5 Consensus size: 27
92922343 TAGAAAATGG
* * * **
92922353 AAGCCTTTGTGACAATTTATGAAATGG
1 AAGCCTTTATGGCAATCTATGAAATAA
* **
92922380 AAGTCTTTATGGCAATCTATGAAATGG
1 AAGCCTTTATGGCAATCTATGAAATAA
** * * *
92922407 AAGTTTTTGTGGCAATCTATTAGATAA
1 AAGCCTTTATGGCAATCTATGAAATAA
92922434 AAGCCTTTATGGC
1 AAGCCTTTATGGC
92922447 TATTTAAGGA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (27 bp):
AAGCCTTTATGGCAATCTATGAAATAA
Found at i:92922931 original size:16 final size:16
Alignment explanation
Indices: 92922890--92922931 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
92922880 AATAATAATT
92922890 ATAAATAAAAA-TATA
1 ATAAATAAAAAGTATA
*
92922905 AT-AATATAAAGTATA
1 ATAAATAAAAAGTATA
92922920 ATAAATAAAAAG
1 ATAAATAAAAAG
92922932 ACAAGTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
ATAAATAAAAAGTATA
Found at i:92923061 original size:15 final size:15
Alignment explanation
Indices: 92923041--92923070 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92923031 TTAAATAAAG
92923041 AAAGAAAAGAAAGAA
1 AAAGAAAAGAAAGAA
*
92923056 AAAGAATAGAAAGAA
1 AAAGAAAAGAAAGAA
92923071 CAGAACATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:92924334 original size:24 final size:22
Alignment explanation
Indices: 92924288--92924334 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
92924278 ATTTAACTGT
* *
92924288 TACTGAATAAATGATTGACTGA
1 TACTGAATAAATGATTAAATGA
92924310 TACTGAATAATAATGATTAAATGA
1 TACTGAAT-A-AATGATTAAATGA
92924334 T
1 T
92924335 TGTTATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 1 0.05
24 12 0.57
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (22 bp):
TACTGAATAAATGATTAAATGA
Found at i:92926126 original size:19 final size:19
Alignment explanation
Indices: 92926102--92926140 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
92926092 AATACTTATT
*
92926102 TATTATTTA-TACATGTGTA
1 TATTA-TTAGTACATATGTA
92926121 TATTATTAGTACATATGTA
1 TATTATTAGTACATATGTA
92926140 T
1 T
92926141 CCATATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAGTACATATGTA
Found at i:92926188 original size:15 final size:14
Alignment explanation
Indices: 92926165--92926203 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
92926155 ACACTTGTCT
92926165 TTTATTTATTATAC
1 TTTATTTATTATAC
*
92926179 TTTATATTATTATAT
1 TTTAT-TTATTATAC
92926194 TTTAATTTAT
1 TTT-ATTTAT
92926204 AGTTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 15 0.68
16 2 0.09
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTATTATAC
Found at i:92926219 original size:21 final size:20
Alignment explanation
Indices: 92926166--92926212 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
92926156 CACTTGTCTT
* *
92926166 TTATT-TATTATACTTTATA
1 TTATTATATTTTAATTTATA
92926185 TTATTATATTTTAATTTATA
1 TTATTATATTTTAATTTATA
92926205 GTTATTAT
1 -TTATTAT
92926213 TTCTTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.21
20 12 0.50
21 7 0.29
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTATATTTTAATTTATA
Found at i:92930063 original size:25 final size:25
Alignment explanation
Indices: 92930035--92930101 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 25
92930025 CTGTTTTTTA
*
92930035 GCTCTTATGAGCATCTCAATATTTG
1 GCTCTTATGAGCATCCCAATATTTG
* ** * *
92930060 GCTCTCACAAGCTTCCCTATATTTG
1 GCTCTTATGAGCATCCCAATATTTG
* *
92930085 GCTCTTTTGAGCTTCCC
1 GCTCTTATGAGCATCCC
92930102 GATACATGGC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.39
Consensus pattern (25 bp):
GCTCTTATGAGCATCCCAATATTTG
Found at i:92930138 original size:25 final size:24
Alignment explanation
Indices: 92930110--92930179 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
92930100 CCGATACATG
*
92930110 GCTCACAAGAGCTTCCTATTATAAA
1 GCTCA-AAGAGCTTCCCATTATAAA
* * *
92930135 GCTCATATGAGCTTCCCGTTATACA
1 GCTCA-AAGAGCTTCCCATTATAAA
92930160 GCTCGAAAGAGCTTCCCATT
1 GCTC-AAAGAGCTTCCCATT
92930180 TACATGCTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (24 bp):
GCTCAAAGAGCTTCCCATTATAAA
Found at i:92930170 original size:50 final size:49
Alignment explanation
Indices: 92930092--92930192 Score: 118
Period size: 50 Copynumber: 2.0 Consensus size: 49
92930082 TTGGCTCTTT
*
92930092 TGAGCTTCCCGATACATGGCTCACAAGAGCTTCCTATTATA-AAGCTCATA
1 TGAGCTTCCCGATACA-GGCTCACAAGAGCTTCCCATT-TACAAGCTCATA
*
92930142 TGAGCTTCCCGTTATACA-GCTCGA-AAGAGCTTCCCATTTACATGCTCATA
1 TGAGCTTCCCG--ATACAGGCTC-ACAAGAGCTTCCCATTTACAAGCTCATA
92930192 T
1 T
92930193 AAGCATTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
49 2 0.04
50 37 0.82
51 1 0.02
52 5 0.11
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (49 bp):
TGAGCTTCCCGATACAGGCTCACAAGAGCTTCCCATTTACAAGCTCATA
Found at i:92933329 original size:66 final size:66
Alignment explanation
Indices: 92933223--92933353 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
92933213 AAAAGAAACC
92933223 TAACTGGTATATATAATTAAAACATTGTTTCTTATCAAACTTCAGTGTATTATCATCCATTCTTA
1 TAACTGGTATATATAATTAAAACATTGTTTCTTATCAAACTTCAGTGTATTATCATCCATTCTTA
92933288 G
66 G
*
92933289 TAACTGGTATATATAATTAAAGCATTGTTTCTTATCAAACTTCAGTGTATTATCATCCATTCTTA
1 TAACTGGTATATATAATTAAAACATTGTTTCTTATCAAACTTCAGTGTATTATCATCCATTCTTA
92933354 TTAAGTTTTG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (66 bp):
TAACTGGTATATATAATTAAAACATTGTTTCTTATCAAACTTCAGTGTATTATCATCCATTCTTA
G
Found at i:92935240 original size:22 final size:24
Alignment explanation
Indices: 92935210--92935264 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
92935200 TTTTTTTAAT
* *
92935210 ATATATAAAAT-ATATG-TTTCAA
1 ATATTTAAAATAAAATGTTTTCAA
*
92935232 ATATTTAAACTAAAATGTTTTCAA
1 ATATTTAAAATAAAATGTTTTCAA
*
92935256 ATACTTAAA
1 ATATTTAAA
92935265 CTGAATTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 9 0.33
23 4 0.15
24 14 0.52
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATTTAAAATAAAATGTTTTCAA
Found at i:92944344 original size:18 final size:17
Alignment explanation
Indices: 92944321--92944372 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
92944311 AAACAAAATT
92944321 CCTAAACCCTACAAAAAC
1 CCTAAACCCTA-AAAAAC
* *
92944339 CTTAAACTCTTAAAAAAC
1 CCTAAAC-CCTAAAAAAC
92944357 CCTAAACCCTTAAAAA
1 CCTAAACCC-TAAAAA
92944373 TGGTCTAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.04
18 24 0.86
19 3 0.11
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (17 bp):
CCTAAACCCTAAAAAAC
Found at i:92949088 original size:21 final size:23
Alignment explanation
Indices: 92949058--92949099 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
92949048 TCTGAAAACC
92949058 TTTATGTGTT-TAAA-GTTTATA
1 TTTATGTGTTCTAAATGTTTATA
*
92949079 TTTATTTGTTCTAAATGTTTA
1 TTTATGTGTTCTAAATGTTTA
92949100 ACACAAACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 4 0.22
23 5 0.28
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (23 bp):
TTTATGTGTTCTAAATGTTTATA
Found at i:92950957 original size:19 final size:22
Alignment explanation
Indices: 92950918--92950957 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
92950908 AGAAACCCAA
92950918 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
92950940 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
92950958 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:92951058 original size:27 final size:26
Alignment explanation
Indices: 92951019--92951133 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
92951009 AGCATGGCTG
* * *
92951019 CCAGAACTGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
92951045 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
92951073 CCAGAACAGATATATATGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
92951100 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
92951127 CCAGAAC
1 CCAGAAC
92951134 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.06
27 55 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:92951078 original size:54 final size:54
Alignment explanation
Indices: 92951019--92951133 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
92951009 AGCATGGCTG
* * *
92951019 CCAGAACTGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
92951073 CCAGAACAGATATATATGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
92951127 CCAGAAC
1 CCAGAAC
92951134 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:92952787 original size:26 final size:26
Alignment explanation
Indices: 92952751--92952860 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
92952741 CATGAAATTC
92952751 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
92952777 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
92952803 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
92952829 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
92952855 TTATCA
1 TTATCA
92952861 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:92954642 original size:15 final size:15
Alignment explanation
Indices: 92954622--92954655 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
92954612 GTATAAAAGG
*
92954622 GTATTTATAACAATC
1 GTATTTACAACAATC
*
92954637 GTATTTACACCAATC
1 GTATTTACAACAATC
92954652 GTAT
1 GTAT
92954656 ATTCGAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (15 bp):
GTATTTACAACAATC
Found at i:92955427 original size:26 final size:23
Alignment explanation
Indices: 92955390--92955443 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 23
92955380 TAAATATGAA
*
92955390 AAAAATTGTAATACAAAATTAATTAT
1 AAAAATTGTAAT--AAAATT-ATAAT
92955416 AAAAATCT-TAATAAAATTATAAT
1 AAAAAT-TGTAATAAAATTATAAT
92955439 AAAAA
1 AAAAA
92955444 AAAAGAGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 9 0.35
24 6 0.23
26 10 0.38
27 1 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (23 bp):
AAAAATTGTAATAAAATTATAAT
Found at i:92960272 original size:45 final size:45
Alignment explanation
Indices: 92960206--92960423 Score: 259
Period size: 45 Copynumber: 5.0 Consensus size: 45
92960196 TATCGCATAG
*
92960206 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
92960251 TACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
92960296 TACCACTCGGGCCTTTGAGCCTGGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
92960341 TACTATTCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* ** * *
92960383 TGA--ATTTGGGTTTTTAAACCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
92960424 TTTGATAAAA
Statistics
Matches: 150, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
41 6 0.04
42 27 0.18
43 11 0.07
44 16 0.11
45 90 0.60
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:92968087 original size:45 final size:45
Alignment explanation
Indices: 92968023--92968183 Score: 236
Period size: 45 Copynumber: 3.6 Consensus size: 45
92968013 TATCGCACAG
*
92968023 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
92968068 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
92968113 TACCACTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGAT-AGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
92968157 TACTATTCGGG-CTTCGAGCCTAGCAGG
1 TACTATTCGGGCCTTTGAGCCTAGCAGG
92968184 AGAAATACCG
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 15 0.14
44 11 0.11
45 78 0.75
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:92978588 original size:3 final size:3
Alignment explanation
Indices: 92978580--92978620 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
92978570 ATACGAAATA
92978580 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
92978621 CATCCAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92980759 original size:5 final size:6
Alignment explanation
Indices: 92980744--92980812 Score: 59
Period size: 6 Copynumber: 10.5 Consensus size: 6
92980734 AAAACCCTAA
*
92980744 TTTTTC TTTTTC TTTTTC -TTTCC TTCTTTC TTTCTCTC TTTTTC GTTTCTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTT-T-TC TTTTTC --TT-TTTC
92980797 TTTGTTC TTTTTC TTT
1 TTT-TTC TTTTTC TTT
92980813 GTTTATTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
5 4 0.08
6 23 0.43
7 15 0.28
8 7 0.13
9 4 0.08
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:92980797 original size:23 final size:22
Alignment explanation
Indices: 92980767--92980809 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
92980757 TTTTCTTTCC
92980767 TTCTTTCTTTCTCTCTTTTTCGT
1 TTCTTTCTTTCT-TCTTTTTCGT
*
92980790 TTCTTTCTTTGTTCTTTTTC
1 TTCTTTCTTTCTTCTTTTTC
92980810 TTTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.00, C:0.23, G:0.05, T:0.72
Consensus pattern (22 bp):
TTCTTTCTTTCTTCTTTTTCGT
Found at i:92980804 original size:26 final size:26
Alignment explanation
Indices: 92980754--92980804 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
92980744 TTTTTCTTTT
*
92980754 TCTTTTTCTTTCCTTCTTTCTTTCTC
1 TCTTTTTCTTTCCTTCTTTCGTTCTC
*
92980780 TCTTTTTCGTTTCTTTCTTT-GTTCT
1 TCTTTTTC-TTTCCTTCTTTCGTTCT
92980805 TTTTCTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.71
Consensus pattern (26 bp):
TCTTTTTCTTTCCTTCTTTCGTTCTC
Found at i:92980845 original size:16 final size:15
Alignment explanation
Indices: 92980816--92980853 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
92980806 TTTCTTTGTT
92980816 TATT-TATTTTATTA
1 TATTATATTTTATTA
92980830 TATTATATTATTATTA
1 TATTATATT-TTATTA
92980846 TATTATAT
1 TATTATAT
92980854 ACTTAAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 4 0.18
15 4 0.18
16 14 0.64
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATTATATTTTATTA
Found at i:92980850 original size:5 final size:5
Alignment explanation
Indices: 92980816--92980853 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
92980806 TTTCTTTGTT
*
92980816 TATT- TATTT TATTA TATTA TATTA TTATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA -TATTA TATTA TAT
92980854 ACTTAAGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TATTA
Found at i:92981474 original size:16 final size:16
Alignment explanation
Indices: 92981453--92981487 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
92981443 TTGGTGAAAT
92981453 AATTATTTATTCACCA
1 AATTATTTATTCACCA
*
92981469 AATTATTTATTCATCA
1 AATTATTTATTCACCA
92981485 AAT
1 AAT
92981488 AATTGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (16 bp):
AATTATTTATTCACCA
Found at i:92981619 original size:2 final size:2
Alignment explanation
Indices: 92981612--92981637 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
92981602 ATTTTTCTTA
92981612 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
92981638 TAAAGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92982319 original size:16 final size:16
Alignment explanation
Indices: 92982298--92982351 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
92982288 TGAATTACTG
92982298 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
92982314 ATTACAACCCTATTCA
1 ATTACAGCTCTATTCA
* *
92982330 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCA
92982346 ATTACA
1 ATTACA
92982352 ATGAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:92983283 original size:11 final size:11
Alignment explanation
Indices: 92983267--92983295 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92983257 GGTTTTTTAC
92983267 TAAAAAAAATA
1 TAAAAAAAATA
92983278 TAAAAAAAATA
1 TAAAAAAAATA
92983289 -AAAAAAA
1 TAAAAAAA
92983296 TTCAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (11 bp):
TAAAAAAAATA
Found at i:92983628 original size:8 final size:8
Alignment explanation
Indices: 92983615--92983653 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
92983605 GAAAAAGAGA
92983615 GAAGAAGG
1 GAAGAAGG
92983623 GAAGAAGG
1 GAAGAAGG
92983631 GAAGAAGG
1 GAAGAAGG
*
92983639 GAAGAAGA
1 GAAGAAGG
92983647 GAAGAAG
1 GAAGAAG
92983654 AAGAAAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (8 bp):
GAAGAAGG
Found at i:92983667 original size:16 final size:17
Alignment explanation
Indices: 92983602--92983669 Score: 50
Period size: 19 Copynumber: 3.8 Consensus size: 17
92983592 CATTTTCAGC
92983602 AAAGAA-AAAGAGAGAAG
1 AAAGAAGAAAGA-AGAAG
* *
92983619 AAGGGAAGAAGGGAAGAAGG
1 AA-AGAAGAA-AGAAGAA-G
*
92983639 GAAGAAGAGAAGAAGAAG
1 AAAGAAGA-AAGAAGAAG
92983657 AAAGAA-AAAGAAG
1 AAAGAAGAAAGAAG
92983670 GAGAGGAGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.15
17 3 0.08
18 9 0.22
19 17 0.43
20 5 0.12
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAAGAAGAAG
Found at i:92983754 original size:14 final size:14
Alignment explanation
Indices: 92983702--92983767 Score: 64
Period size: 14 Copynumber: 4.6 Consensus size: 14
92983692 CGGCTGAGAG
92983702 AAGAAAAAGAA--A
1 AAGAAAAAGAAGGA
92983714 AAGAAAAAGAGAAGGA
1 AAG-AAAA-AGAAGGA
* *
92983730 GAAGAAGAAGAGGGA
1 -AAGAAAAAGAAGGA
*
92983745 AGGAAAAAGAAGGA
1 AAGAAAAAGAAGGA
92983759 AAGAAAAAG
1 AAGAAAAAG
92983768 GTAATTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 3 0.07
13 4 0.09
14 23 0.53
15 6 0.14
16 4 0.09
17 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAGGA
Found at i:92983754 original size:17 final size:17
Alignment explanation
Indices: 92983710--92983767 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
92983700 AGAAGAAAAA
*
92983710 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
92983728 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
92983747 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
92983761 GAAAAAG
1 GAAAAAG
92983768 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:92984245 original size:30 final size:31
Alignment explanation
Indices: 92984205--92984263 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
92984195 TTTTGTTAAA
92984205 ATAATATAAAAAAATAAAATATGAAAATAGT
1 ATAATATAAAAAAATAAAATATGAAAATAGT
*
92984236 ATAAT-TAAAAAAATAAAATTTGAAAATA
1 ATAATATAAAAAAATAAAATATGAAAATA
92984264 AAAAATACGA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (31 bp):
ATAATATAAAAAAATAAAATATGAAAATAGT
Found at i:92984356 original size:135 final size:133
Alignment explanation
Indices: 92984215--92984470 Score: 327
Period size: 135 Copynumber: 1.9 Consensus size: 133
92984205 ATAATATAAA
** * * *
92984215 AAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATTTGAAAATAAAAAATACGAACAAGG
1 AAAATAAAATACCAAAATAATATAATTAAAAAAAT--AATAT-AAAA-AAAAAATACGAACAAAG
* **
92984280 TGCCAAAGTCA-GGTTACTTATTAAATTAATATAAAAAA-ACTTAAATAATACATTTGAATGATT
62 TGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAATGATT
92984343 TTATGCT
127 TTATGCT
* * ** * *
92984350 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAATATAAAAAAAAAATACGAACAAAGTGCC
*
92984415 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAA
66 AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAA
92984471 GCATTATGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
131 24 0.23
132 26 0.25
133 24 0.23
135 30 0.29
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (133 bp):
AAAATAAAATACCAAAATAATATAATTAAAAAAATAATATAAAAAAAAAATACGAACAAAGTGCC
AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAATGATTTTAT
GCT
Found at i:92984523 original size:10 final size:10
Alignment explanation
Indices: 92984482--92984528 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
92984472 CATTATGTAC
92984482 TAAAATAATA
1 TAAAATAATA
*
92984492 T-AAAGAA-A
1 TAAAATAATA
92984500 TAAAA-AA-A
1 TAAAATAATA
92984508 -AAAATAATA
1 TAAAATAATA
92984517 TAAAATAATA
1 TAAAATAATA
92984527 TA
1 TA
92984529 CGAAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
7 4 0.12
8 7 0.22
9 9 0.28
10 12 0.38
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (10 bp):
TAAAATAATA
Found at i:92984552 original size:18 final size:18
Alignment explanation
Indices: 92984516--92984551 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
92984506 AAAAAATAAT
*
92984516 ATAAAATAATATACGAAA
1 ATAAAAAAATATACGAAA
92984534 ATAAAAAAAT-TACGAAA
1 ATAAAAAAATATACGAAA
92984551 A
1 A
92984552 AGTATCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (18 bp):
ATAAAAAAATATACGAAA
Found at i:92984651 original size:294 final size:297
Alignment explanation
Indices: 92984350--92985242 Score: 1056
Period size: 294 Copynumber: 3.0 Consensus size: 297
92984340 ATTTTATGCT
**
92984350 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
*
92984415 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
* *
92984480 ACTAAAATAATATAAAGAAATAAAA-AAAAAAATAATATAAAATAATATACGAAAATA-AAAAAA
131 ACTAAAATAATATAAAGAAATAAAATAAAAAAATAATATAAAATAA-AAAAGAAAATACAAAAAA
* *
92984543 TTACG-AAAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAACA-GT-T
195 ATACGAAAAAAGTATCAAAATCAGGGTTATTTA-T--AAAA---TTAATATAAAAAAACACGTAT
**
92984605 -A-AT-TAATACATTTG-AATTTTTTTTGCTAAAATAATAT-AA
254 AATATATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
*
92984644 AAAATAAAATAAGAAAAAAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
92984709 AAAATCAGGGATATTTATTGAAAAAATATAAAAAATA-TTGAAATAATACATTTGAAACATTATG
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTT-AAATAATACATTTGAAACATTATG
* ** *** * *
92984773 TACTAAAATAATATGAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAA
130 TACTAAAATAATATAAAGAAATAAAATAAAAAAATAATATAAAATAAAAAAGAAAATACAAAAAA
* * * *
92984838 ATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATA
195 ATACGAAAAAAGTATCAAAATCAGGGTTATTTATAAAATTAATATAAAAAAACACGT--ATAATA
92984903 TACATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
258 T--ATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
* *
92984945 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCT
1 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
** * * *
92985009 AAAATCAGGGTTATTTATTAAAAAAATATTTAAAACACTTAAATAATATATTTAAAACATTATGT
66 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
** * * ** *
92985074 ACTAAAATAAGGGT-TTTA-AAATTAAATAATACGAAAGTAATAT-ATTTAAAAAA-AAGATACG
131 ACTAAAATAA---TATAAAGAAATAAAATAA-A--AAAATAATATAAAATAAAAAAGAAAATAC-
* * * *
92985135 AAAAAAAATACG-AAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAATAT-AAAAAATAC-T-
189 -AAAAAAATACGAAAAAAGTATCAAAATCAGGGTTATTTATAAAATTAATATAAAAAAACACGTA
*
92985196 TACATA-ATAATACATTTAAAACA-TTTTTGCTAAAATAATATAAA
253 TA-ATATATAATACATTTGAAACATTTTTTGCTAAAATAATATAAA
92985240 AAA
1 AAA
92985243 TAATATACAA
Statistics
Matches: 529, Mismatches: 45, Indels: 49
0.85 0.07 0.08
Matches are distributed among these distances:
290 14 0.03
291 1 0.00
293 5 0.01
294 153 0.29
295 51 0.10
296 44 0.08
298 2 0.00
299 14 0.03
300 106 0.20
301 55 0.10
302 17 0.03
303 47 0.09
304 20 0.04
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.29
Consensus pattern (297 bp):
AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
ACTAAAATAATATAAAGAAATAAAATAAAAAAATAATATAAAATAAAAAAGAAAATACAAAAAAA
TACGAAAAAAGTATCAAAATCAGGGTTATTTATAAAATTAATATAAAAAAACACGTATAATATAT
AATACATTTGAAACATTTTTTGCTAAAATAATATAAA
Done.