Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 316 of 345
Found at i:94871933 original size:23 final size:23
Alignment explanation
Indices: 94871869--94871934 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
94871859 CCTGATCAGT
94871869 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
94871891 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
94871913 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
94871935 TCGATAAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:94872331 original size:15 final size:14
Alignment explanation
Indices: 94872305--94872346 Score: 66
Period size: 15 Copynumber: 2.9 Consensus size: 14
94872295 CATATATATT
94872305 ATATAATTCAATCA
1 ATATAATTCAATCA
94872319 ATATAATTTCAATCA
1 ATATAA-TTCAATCA
94872334 ATATAAATTCAAT
1 ATAT-AATTCAAT
94872347 AAATTCATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.23
15 18 0.69
16 2 0.08
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAATTCAATCA
Found at i:94873610 original size:5 final size:5
Alignment explanation
Indices: 94873602--94873633 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
94873592 TCTTTAGTTT
94873602 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
94873634 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:94873669 original size:8 final size:8
Alignment explanation
Indices: 94873656--94873684 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
94873646 TATCTTTATT
94873656 ATATAATA
1 ATATAATA
94873664 ATATAATA
1 ATATAATA
94873672 ATATAATA
1 ATATAATA
94873680 ATATA
1 ATATA
94873685 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:94878296 original size:23 final size:23
Alignment explanation
Indices: 94878232--94878297 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
94878222 CCTGATCAGT
94878232 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** * *
94878254 A-ACGACACACGAGGTTCCTGAA
1 ATACGACACATAAAGTGCCTGAA
94878276 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
94878298 TCGATAAAGC
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 14 0.41
22 4 0.12
23 16 0.47
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:94878694 original size:15 final size:15
Alignment explanation
Indices: 94878668--94878724 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
94878658 CATATATATT
94878668 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
94878682 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
94878697 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
94878712 ATATAAATTCAAT
1 ATATAATTTCAAT
94878725 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:94879978 original size:5 final size:5
Alignment explanation
Indices: 94879970--94880001 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
94879960 TCTTTAGTTT
94879970 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
94880002 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:94880037 original size:8 final size:8
Alignment explanation
Indices: 94880024--94880052 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
94880014 TATCTTTATT
94880024 ATATAATA
1 ATATAATA
94880032 ATATAATA
1 ATATAATA
94880040 ATATAATA
1 ATATAATA
94880048 ATATA
1 ATATA
94880053 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:94884671 original size:23 final size:23
Alignment explanation
Indices: 94884607--94884672 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
94884597 CCTGATCAGT
94884607 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** * *
94884629 A-ACGACACACGAGGTTCCTGAA
1 ATACGACACATAAAGTGCCTGAA
94884651 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
94884673 TCGATAAAGC
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 14 0.41
22 4 0.12
23 16 0.47
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:94885071 original size:15 final size:15
Alignment explanation
Indices: 94885045--94885101 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
94885035 CATATATATT
94885045 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
94885059 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
94885074 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
94885089 ATATAAATTCAAT
1 ATATAATTTCAAT
94885102 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:94885774 original size:56 final size:56
Alignment explanation
Indices: 94885688--94885800 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
94885678 TATCTCACAA
94885688 AATTCATTATATCTCATAATTGACAACTCAATACCGTTTCTTCTATAAGAAACTAG
1 AATTCATTATATCTCATAATTGACAACTCAATACCGTTTCTTCTATAAGAAACTAG
94885744 AATTCATTATATCTCATAATTGACAACTCAATACCGTTTCTTCTATAAGAAACTAG
1 AATTCATTATATCTCATAATTGACAACTCAATACCGTTTCTTCTATAAGAAACTAG
94885800 A
1 A
94885801 CTCAATAAGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.35
Consensus pattern (56 bp):
AATTCATTATATCTCATAATTGACAACTCAATACCGTTTCTTCTATAAGAAACTAG
Found at i:94886426 original size:5 final size:5
Alignment explanation
Indices: 94886418--94886456 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
94886408 TTAGTTTATG
94886418 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAAT
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAAT
94886457 TAAAACATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:94886492 original size:8 final size:8
Alignment explanation
Indices: 94886479--94886507 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
94886469 TATCTTTATT
94886479 ATATAATA
1 ATATAATA
94886487 ATATAATA
1 ATATAATA
94886495 ATATAATA
1 ATATAATA
94886503 ATATA
1 ATATA
94886508 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:94887316 original size:28 final size:29
Alignment explanation
Indices: 94887280--94887348 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
94887270 TTCAGTACTA
94887280 GCCACAAAGGCTTTC-TATCCAAAGTTGT
1 GCCACAAAGGCTTTCTTATCCAAAGTTGT
*
94887308 GCCATAAAGGCTTTCTTATCCAAAGTTGT
1 GCCACAAAGGCTTTCTTATCCAAAGTTGT
94887337 GCCACAAAGGCT
1 GCCACAAAGGCT
94887349 ATCATTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 14 0.37
29 24 0.63
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (29 bp):
GCCACAAAGGCTTTCTTATCCAAAGTTGT
Found at i:94887374 original size:89 final size:90
Alignment explanation
Indices: 94887222--94887414 Score: 250
Period size: 89 Copynumber: 2.2 Consensus size: 90
94887212 AGTACTCACT
* * * *
94887222 ATAAAGGCTTTCCTGTCTAGAATTGTGCCACAAAGGTTATTCTTTACATTCAGTACTAGCCACAA
1 ATAAAGGCTTTCCTATCCAGAATTGTGCCACAAAGGCTATTCTTTAAATTCAGTACTAGCCACAA
94887287 AGGCTTT-CTATCCAAAGTTGTGCC
66 AGGCTTTCCTATCCAAAGTTGTGCC
* **
94887311 ATAAAGGCTTTCTTATCCA-AAGTTGTGCCACAAAGGCTA-TCATTTAAATTTGGTACTCA-CCA
1 ATAAAGGCTTTCCTATCCAGAA-TTGTGCCACAAAGGCTATTC-TTTAAATTCAGTACT-AGCCA
*
94887373 CAAAGGCTTTCCTGTCCAAAGTTGTGCC
63 CAAAGGCTTTCCTATCCAAAGTTGTGCC
*
94887401 ATAAAGGCTATCCT
1 ATAAAGGCTTTCCT
94887415 TTACATTCAG
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
88 4 0.04
89 57 0.63
90 29 0.32
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (90 bp):
ATAAAGGCTTTCCTATCCAGAATTGTGCCACAAAGGCTATTCTTTAAATTCAGTACTAGCCACAA
AGGCTTTCCTATCCAAAGTTGTGCC
Found at i:94887391 original size:61 final size:61
Alignment explanation
Indices: 94887313--94887444 Score: 192
Period size: 61 Copynumber: 2.2 Consensus size: 61
94887303 GTTGTGCCAT
* **
94887313 AAAGGCTTTCTTATCCAAAGTTGTGCCACAAAGGCTATCATTTAAATTTGGTACTCACCAC
1 AAAGGCTTTCCTATCCAAAGTTGTGCCACAAAGGCTATCATTTAAATTCAGTACTCACCAC
* * * *
94887374 AAAGGCTTTCCTGTCCAAAGTTGTGCCATAAAGGCTATCCTTTACATTCAGTACTCACCAC
1 AAAGGCTTTCCTATCCAAAGTTGTGCCACAAAGGCTATCATTTAAATTCAGTACTCACCAC
*
94887435 AATGGCTTTC
1 AAAGGCTTTC
94887445 ATTCTCTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (61 bp):
AAAGGCTTTCCTATCCAAAGTTGTGCCACAAAGGCTATCATTTAAATTCAGTACTCACCAC
Found at i:94887650 original size:53 final size:53
Alignment explanation
Indices: 94887565--94887668 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 53
94887555 AATTTTCCTT
* * * *
94887565 ATATGATGCCAGAACCCACCGGTTAGGGTCTTACACAATATGGTCTTCTTTCC
1 ATATGATACCAGAACCCACCAGTTAGGATCTTACACAATATGGCCTTCTTTCC
* * * *
94887618 ATATGATACCATAACCCACCAGTTATGATCTTACATAGTATGGCCTTCTTT
1 ATATGATACCAGAACCCACCAGTTAGGATCTTACACAATATGGCCTTCTTT
94887669 AGTGTCGTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (53 bp):
ATATGATACCAGAACCCACCAGTTAGGATCTTACACAATATGGCCTTCTTTCC
Found at i:94889265 original size:46 final size:45
Alignment explanation
Indices: 94889212--94889385 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
94889202 TTTGGGCATC
*
94889212 CGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTT
*** * * *
94889258 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTT
* * *
94889305 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTT
* * *
94889351 CGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94889386 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTT
Found at i:94889365 original size:93 final size:93
Alignment explanation
Indices: 94889206--94889377 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
94889196 AGGATATTTG
* * * * *
94889206 GGCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCATTGAG
94889271 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
94889299 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCATTGAG
*
94889364 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
94889378 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:94895327 original size:22 final size:22
Alignment explanation
Indices: 94895302--94895345 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
94895292 TAGTCATATA
94895302 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
94895324 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
94895346 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:94895381 original size:13 final size:14
Alignment explanation
Indices: 94895365--94895406 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
94895355 TTTCAATTTT
94895365 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
94895378 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
94895393 ATTTTAAATAATAT
1 ATTTT-AATAATAT
94895407 TATTCACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:94895391 original size:16 final size:16
Alignment explanation
Indices: 94895369--94895405 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
94895359 AATTTTATTT
94895369 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
94895386 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
94895401 TAATA
1 TAATA
94895406 TTATTCACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:94895504 original size:15 final size:15
Alignment explanation
Indices: 94895484--94895539 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
94895474 ATTTAATGTT
94895484 AATATTTTAATAATA
1 AATATTTTAATAATA
*
94895499 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
94895518 AATATATTAATAATA
1 AATATTTTAATAATA
94895533 AATATTT
1 AATATTT
94895540 ACAATTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:94895542 original size:31 final size:33
Alignment explanation
Indices: 94895484--94895546 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
94895474 ATTTAATGTT
*
94895484 AATATTTTAATAATAAATATTTATTACAATTATA
1 AATATATTAATAATAAATA-TTATTACAATTATA
94895518 AATATATTAATAATAAATA-T-TTACAATTA
1 AATATATTAATAATAAATATTATTACAATTA
94895547 ATTAAAAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 9 0.32
32 1 0.04
34 18 0.64
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (33 bp):
AATATATTAATAATAAATATTATTACAATTATA
Found at i:94901801 original size:14 final size:14
Alignment explanation
Indices: 94901779--94901817 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
94901769 CCAGAAAAGT
*
94901779 AAATTATTTTCCAG
1 AAATCATTTTCCAG
*
94901793 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
94901807 AAGTCATTTTC
1 AAATCATTTTC
94901818 AGTAAAGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:94903999 original size:56 final size:54
Alignment explanation
Indices: 94903906--94904013 Score: 146
Period size: 56 Copynumber: 2.0 Consensus size: 54
94903896 TTAATAAGTC
**
94903906 AATAATTAAATAAATTTTTTAAATAATATATAGATTATTTTTTAATTTTTAATA
1 AATAATTAAATAAACATTTTAAATAATATATAGATTATTTTTTAATTTTTAATA
* *
94903960 AATAATTAAAATATAACATTTTAAATAATTTAATA-ATTATTTTTTATTTTTTAA
1 AATAATT-AAATA-AACATTTTAAATAATAT-ATAGATTATTTTTTAATTTTTAA
94904014 AATTGGATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
54 7 0.15
55 5 0.11
56 32 0.68
57 3 0.06
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (54 bp):
AATAATTAAATAAACATTTTAAATAATATATAGATTATTTTTTAATTTTTAATA
Found at i:94904843 original size:135 final size:137
Alignment explanation
Indices: 94904693--94904955 Score: 467
Period size: 135 Copynumber: 1.9 Consensus size: 137
94904683 ATTATCGTAA
94904693 TATTTTAGTCACATGACAAAATCTTAATCACTTGTGAAGTTAAAATTTTGCACAATTAATGTAAT
1 TATTTTAGTCACATGACAAAATCTTAATCACTTGTGAAGTTAAAATTTTGCACAATTAATGTAAT
94904758 AAATAATTATA-TTAAAAAATAAAAATAAAT-CATTTGCTTAGAAAATAAAAAAATCGTTATTTT
66 AAATAATTATATTTAAAAAATAAAAATAAATACATTTGCTTAGAAAATAAAAAAATCGTTATTTT
94904821 TTTATTT
131 TTTATTT
*
94904828 TATTTTTGTCACATGACAAAATCTTAATCACTTGTGAAGTTAAAATTTTGCACAATTAATGTAAT
1 TATTTTAGTCACATGACAAAATCTTAATCACTTGTGAAGTTAAAATTTTGCACAATTAATGTAAT
94904893 AAATAATTATATTTTAAAAAATAAAAATAAATAAAACATTTGCTTAGAAAATAAAAAAATCGT
66 AAATAATTATA-TTTAAAAAATAAAAATAAAT---ACATTTGCTTAGAAAATAAAAAAATCGT
94904956 CCTATTTTAA
Statistics
Matches: 121, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
135 75 0.62
137 19 0.16
141 27 0.22
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (137 bp):
TATTTTAGTCACATGACAAAATCTTAATCACTTGTGAAGTTAAAATTTTGCACAATTAATGTAAT
AAATAATTATATTTAAAAAATAAAAATAAATACATTTGCTTAGAAAATAAAAAAATCGTTATTTT
TTTATTT
Found at i:94906893 original size:15 final size:16
Alignment explanation
Indices: 94906873--94906905 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
94906863 AATTTTGTCA
94906873 TCTTTTTTATTTT-TT
1 TCTTTTTTATTTTCTT
*
94906888 TCTTTTTTCTTTTCTT
1 TCTTTTTTATTTTCTT
94906904 TC
1 TC
94906906 CTCTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (16 bp):
TCTTTTTTATTTTCTT
Found at i:94907811 original size:38 final size:38
Alignment explanation
Indices: 94907769--94907845 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
94907759 GTTACCACCC
*
94907769 AATTGAATACATGTTAAGCATGTTTACTACCAGTGTTG
1 AATTGAATACATGTTAAGCACGTTTACTACCAGTGTTG
* *
94907807 AATTGAATACATGTTAAGCACGTTTACTGCTAGTGTTG
1 AATTGAATACATGTTAAGCACGTTTACTACCAGTGTTG
94907845 A
1 A
94907846 TTTGTTCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (38 bp):
AATTGAATACATGTTAAGCACGTTTACTACCAGTGTTG
Found at i:94908598 original size:28 final size:29
Alignment explanation
Indices: 94908567--94908623 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
94908557 TAAAGTGATT
*
94908567 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
* * *
94908595 TTTGAGAAAAGTGTAAATTGAGGGGTTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
94908624 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTGAGGGATTAA
Found at i:94908632 original size:29 final size:28
Alignment explanation
Indices: 94908568--94908632 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
94908558 AAAGTGATTT
* * *
94908568 TTGACAAAAATGTCAATTAGGGATTAAT
1 TTGAGAAAAATGTAAATTAGGGATTAAA
* *
94908596 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATT-AGGGATTAAA
*
94908625 TTGTGAAA
1 TTGAGAAA
94908633 TAAATGAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAGGGATTAAA
Found at i:94918543 original size:27 final size:27
Alignment explanation
Indices: 94918499--94918584 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
94918489 AGCATAGCTG
94918499 CCAG-AACAGT-AAGTGTGGCAAAGCCA
1 CCAGTAACAGTGAA-TGTGGCAAAGCCA
* * * * *
94918525 CCCGTATCAGTGATTGTGGCATAGCTA
1 CCAGTAACAGTGAATGTGGCAAAGCCA
* * *
94918552 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTGAATGTGGCAAAGCCA
94918579 CCAGTA
1 CCAGTA
94918585 CAGAACTTCC
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.06
27 43 0.91
28 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CCAGTAACAGTGAATGTGGCAAAGCCA
Found at i:94918774 original size:27 final size:27
Alignment explanation
Indices: 94918744--94918813 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
94918734 ATACAAGGGT
* * *
94918744 ATTACGGTCATTTTACCCTATAGGGGC
1 ATTACGGTAATTTTACCCTACAGGGAC
* * *
94918771 ATTACGATAATTTTATCCTACAGGGAT
1 ATTACGGTAATTTTACCCTACAGGGAC
94918798 ATTACGGTAATTTTAC
1 ATTACGGTAATTTTAC
94918814 AAACTGGGGG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTACGGTAATTTTACCCTACAGGGAC
Found at i:94918827 original size:27 final size:27
Alignment explanation
Indices: 94918797--94919077 Score: 281
Period size: 26 Copynumber: 10.6 Consensus size: 27
94918787 CCTACAGGGA
*
94918797 TATTACGGTAATTTTACAAACTGGGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
* *
94918824 TATTTCGGTAATTTTACAATC-AGGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
* * *
94918850 TATTTCAGTAATTTTAC-AATTAGGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
**
94918876 TATTTCGGTAATTTTACAAACTGGGCA
1 TATTTCGGTAATTTTACAAACTGGGGG
* * *
94918903 TATTTTGATAATTTTACAAA-TCGAGGG
1 TATTTCGGTAATTTTACAAACT-GGGGG
*
94918930 TATTTCGATAATTTTAC-AA-TAGGGGG
1 TATTTCGGTAATTTTACAAACT-GGGGG
* * ***
94918956 TATTTTGGTCATTTTACAAACTGAAAG
1 TATTTCGGTAATTTTACAAACTGGGGG
*
94918983 TATTTCGGTAATTTTACAATC-GGGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
* *
94919009 TATTTCAGTAATTTTACAAACTAGGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
* *
94919036 TATTTTGGTAATTTTAC-AACTGAGGG
1 TATTTCGGTAATTTTACAAACTGGGGG
94919062 TATTT-GGATAATTTTA
1 TATTTCGG-TAATTTTA
94919078 TAAATCGGGG
Statistics
Matches: 209, Mismatches: 38, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
25 3 0.01
26 104 0.50
27 101 0.48
28 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAACTGGGGG
Found at i:94918866 original size:53 final size:53
Alignment explanation
Indices: 94918804--94919054 Score: 285
Period size: 53 Copynumber: 4.7 Consensus size: 53
94918794 GGATATTACG
94918804 GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATCAGGGGTATTTCA
1 GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATCAGGGGTATTTCA
* * * * * *
94918857 GTAATTTTAC-AATTAGGGGTATTTCGGTAATTTTACAAACTGGGCATATTT-T
1 GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATCAGGG-GTATTTCA
* * **
94918909 GATAATTTTACAAA-TCGAGGGTATTTCGATAATTTTACAAT-AGGGGGTATTTTG
1 G-TAATTTTACAAACT-GGGGGTATTTCGGTAATTTTACAATCA-GGGGTATTTCA
* *** *
94918963 GTCATTTTACAAACTGAAAGTATTTCGGTAATTTTACAATCGGGGGTATTTCA
1 GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATCAGGGGTATTTCA
* *
94919016 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
1 GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAA
94919055 CTGAGGGTAT
Statistics
Matches: 164, Mismatches: 26, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
52 31 0.19
53 105 0.64
54 28 0.17
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATCAGGGGTATTTCA
Found at i:94918891 original size:106 final size:106
Alignment explanation
Indices: 94918764--94919054 Score: 295
Period size: 106 Copynumber: 2.7 Consensus size: 106
94918754 TTTTACCCTA
* * * * *
94918764 TAGGGGCATTACGATAATTTTATCCTACAGGGATATTACGGTAATTTTACAAACTGGGGGTATTT
1 TAGGGGTATTTCGGTAATTTTA-CCAACAGGGATATTTCGGTAATTTTACAAACTGGGGGTATTT
*
94918829 CGGTAATTTTACAATCA-GGGGTATTTCAGTAATTTTAC-AAT
65 CGGTAATTTTACAAT-AGGGGGTATTTCAGTAATTTTACAAAC
* * * * *
94918870 TAGGGGTATTTCGGTAATTTTACAAACTGGGCATATTTTGATAATTTTACAAA-TCGAGGGTATT
1 TAGGGGTATTTCGGTAATTTTACCAACAGGG-ATATTTCGGTAATTTTACAAACT-GGGGGTATT
* ** *
94918934 TCGATAATTTTACAATAGGGGGTATTTTGGTCATTTTACAAAC
64 TCGGTAATTTTACAATAGGGGGTATTTCAGTAATTTTACAAAC
** * * * *
94918977 T-GAAAGTATTTCGGTAATTTTA-CAATCGGGGGTATTTCAGTAATTTTACAAACTAGGGGTATT
1 TAG-GGGTATTTCGGTAATTTTACCAA-CAGGGATATTTCGGTAATTTTACAAACTGGGGGTATT
*
94919040 TTGGTAATTTTACAA
64 TCGGTAATTTTACAA
94919055 CTGAGGGTAT
Statistics
Matches: 151, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
105 8 0.05
106 118 0.78
107 25 0.17
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (106 bp):
TAGGGGTATTTCGGTAATTTTACCAACAGGGATATTTCGGTAATTTTACAAACTGGGGGTATTTC
GGTAATTTTACAATAGGGGGTATTTCAGTAATTTTACAAAC
Found at i:94918977 original size:80 final size:78
Alignment explanation
Indices: 94918803--94919077 Score: 333
Period size: 80 Copynumber: 3.5 Consensus size: 78
94918793 GGGATATTAC
* *
94918803 GGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAATC-AGGGGTATTTCAGTAATTTTAC
1 GGTAATTTTACAAACT-GGGATATTTCGATAATTTTACAATCGA-GGGTATTTCAGTAATTTTAC
* *
94918867 AATTAGGGGTATTTC
64 AACTAGGGGTATTTT
*
94918882 GGTAATTTTACAAACTGGGCATATTTTGATAATTTTACAAATCGAGGGTATTTC-GATAATTTTA
1 GGTAATTTTACAAACTGGG-ATATTTCGATAATTTTAC-AATCGAGGGTATTTCAG-TAATTTTA
94918946 CAA-TAGGGGGTATTTT
63 CAACTA-GGGGTATTTT
* ** * *
94918962 GGTCATTTTACAAACTGAAAGTATTTCGGTAATTTTACAATCGGGGGTATTTCAGTAATTTTACA
1 GGTAATTTTACAAACTGGGA-TATTTCGATAATTTTACAATCGAGGGTATTTCAGTAATTTTAC-
94919027 AACTAGGGGTATTTT
64 AACTAGGGGTATTTT
* *
94919042 GGTAATTTTAC-AACTGAGGGTATTTGGATAATTTTA
1 GGTAATTTTACAAACTG-GGATATTTCGATAATTTTA
94919078 TAAATCGGGG
Statistics
Matches: 170, Mismatches: 16, Indels: 20
0.83 0.08 0.10
Matches are distributed among these distances:
78 3 0.02
79 77 0.45
80 87 0.51
81 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (78 bp):
GGTAATTTTACAAACTGGGATATTTCGATAATTTTACAATCGAGGGTATTTCAGTAATTTTACAA
CTAGGGGTATTTT
Found at i:94938093 original size:6 final size:6
Alignment explanation
Indices: 94938070--94938112 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
94938060 GAGGGGGATT
* * *
94938070 TTAAAA TTAAAGA CTAAAG TTAAAG TTAAAA TTAAAA TTAAAA
1 TTAAAA TTAAA-A TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA
94938113 CTACGAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (6 bp):
TTAAAA
Found at i:94938667 original size:43 final size:43
Alignment explanation
Indices: 94938595--94938696 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
94938585 ATATCTCATA
* *
94938595 ATAATAT-TCTATAATATCTCATTAGGAATCAAATTGCTAAGAG
1 ATAATATCTC-ATAATATCTCATTAAGAATCAAATTGCTAAAAG
* *
94938638 ATAATATCTCATAATATC-CTATTAAGAATCAATTTGCTAAAAT
1 ATAATATCTCATAATATCTC-ATTAAGAATCAAATTGCTAAAAG
*
94938681 ATAATATCTCACAATA
1 ATAATATCTCATAATA
94938697 ATATCAACAC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.02
43 49 0.94
44 2 0.04
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (43 bp):
ATAATATCTCATAATATCTCATTAAGAATCAAATTGCTAAAAG
Found at i:94941439 original size:25 final size:25
Alignment explanation
Indices: 94941395--94941443 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
94941385 TATGCCCATA
*
94941395 CGAGCATGTAATCGGGAAGCTCTTC
1 CGAGCATGTAATCGGAAAGCTCTTC
94941420 CGAGCCATGTAA-CGGAAAGCTCTT
1 CGAG-CATGTAATCGGAAAGCTCTT
94941444 GTGAGTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (25 bp):
CGAGCATGTAATCGGAAAGCTCTTC
Found at i:94941547 original size:50 final size:50
Alignment explanation
Indices: 94941453--94941561 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
94941443 TGTGAGTTGT
* **
94941453 ATAACGGAAAGCTTAAGAGAGCCATTAATCAGGAAACTTGTAAGAGCCAA
1 ATAACGGGAAGCTTAAGAGAGCCATTAATCAGGAAACTCATAAGAGCCAA
* * ** *
94941503 ATATCGGGAAGCTTATGAGAGCCATATAA-CAGGATGCTCATAAGAGCTAA
1 ATAACGGGAAGCTTAAGAGAGCCAT-TAATCAGGAAACTCATAAGAGCCAA
94941553 ATAACGGGA
1 ATAACGGGA
94941562 CGCTCTTGCG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 46 0.94
51 3 0.06
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (50 bp):
ATAACGGGAAGCTTAAGAGAGCCATTAATCAGGAAACTCATAAGAGCCAA
Found at i:94941548 original size:25 final size:25
Alignment explanation
Indices: 94941493--94941566 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 25
94941483 AGGAAACTTG
* * *
94941493 TAAGAGCCAAATATCGGGAAGCTTA
1 TAAGAGCCAAATAACAGGAAGCTCA
* * *
94941518 TGAGAGCCATATAACAGGATGCTCA
1 TAAGAGCCAAATAACAGGAAGCTCA
* * *
94941543 TAAGAGCTAAATAACGGGACGCTC
1 TAAGAGCCAAATAACAGGAAGCTC
94941567 TTGCGAGTTG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (25 bp):
TAAGAGCCAAATAACAGGAAGCTCA
Found at i:94946271 original size:2 final size:2
Alignment explanation
Indices: 94946264--94946299 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
94946254 ACCTCATGGG
94946264 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94946300 GTAGATGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94950582 original size:26 final size:25
Alignment explanation
Indices: 94950547--94950596 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
94950537 TTTATTGTAA
*
94950547 AATTTTAAAATTAT-ATATGTATTTG
1 AATTTTAAAAGTATAATAT-TATTTG
94950572 AATTTATAAAAGTATAATATTATTT
1 AATTT-TAAAAGTATAATATTATTT
94950597 AAAAGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 13 0.59
27 4 0.18
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (25 bp):
AATTTTAAAAGTATAATATTATTTG
Found at i:94950732 original size:17 final size:18
Alignment explanation
Indices: 94950696--94950744 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
94950686 GTATTTTTAA
94950696 TAATTTTTAAATAATATTT
1 TAATTTTT-AATAATATTT
*
94950715 TAATTTTT-ATATTATTT
1 TAATTTTTAATAATATTT
*
94950732 TAGGTTTTTAATA
1 TA-ATTTTTAATA
94950745 CTTTTATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 10 0.38
18 5 0.19
19 11 0.42
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (18 bp):
TAATTTTTAATAATATTT
Found at i:94951276 original size:3 final size:3
Alignment explanation
Indices: 94951268--94951301 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
94951258 GAAACAGTTC
94951268 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
94951302 GTTGTTGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:94957421 original size:33 final size:33
Alignment explanation
Indices: 94957384--94957450 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
94957374 AAGTTATATC
94957384 TGTTATGCTCGATTGGTATATACTTGCTTATAA
1 TGTTATGCTCGATTGGTATATACTTGCTTATAA
94957417 TGTTATGCTCGATTGGTATATACTTGCTTATAA
1 TGTTATGCTCGATTGGTATATACTTGCTTATAA
94957450 T
1 T
94957451 TATACTTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (33 bp):
TGTTATGCTCGATTGGTATATACTTGCTTATAA
Found at i:94964448 original size:9 final size:9
Alignment explanation
Indices: 94964436--94964569 Score: 60
Period size: 9 Copynumber: 14.1 Consensus size: 9
94964426 TTATAGAAAT
94964436 TATATAAAA
1 TATATAAAA
*
94964445 TATACAAAA
1 TATATAAAA
94964454 TA-ATAAAA
1 TATATAAAA
*
94964462 GATAATAAAAA
1 TAT-AT-AAAA
*
94964473 TATTTTAAAAA
1 TA-TAT-AAAA
*
94964484 TTATAGAAAA
1 -TATATAAAA
*
94964494 CGGTATAGAAAA
1 ---TATATAAAA
94964506 TAT-TAAAAA
1 TATAT-AAAA
94964515 TTATATAAAA
1 -TATATAAAA
94964525 TCATATAAAA
1 T-ATATAAAA
* *
94964535 TAGA-AAAT
1 TATATAAAA
94964543 TATATAAAA
1 TATATAAAA
*
94964552 T-TAAAAAA
1 TATATAAAA
*
94964560 TTTATAAAA
1 TATATAAAA
94964569 T
1 T
94964570 TGAAAATAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
8 19 0.20
9 31 0.32
10 22 0.23
11 13 0.13
12 12 0.12
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (9 bp):
TATATAAAA
Found at i:94964493 original size:10 final size:9
Alignment explanation
Indices: 94964426--94964568 Score: 62
Period size: 10 Copynumber: 14.9 Consensus size: 9
94964416 TAAATGGTGT
*
94964426 TTATAGAAA
1 TTATAAAAA
94964435 TTATATAAAA
1 TTATA-AAAA
94964445 -TATACAAAA
1 TTATA-AAAA
*
94964454 TAATAAAAGA
1 TTATAAAA-A
*
94964464 TAATAAAAATA
1 TTAT-AAAA-A
*
94964475 TTTTAAAAA
1 TTATAAAAA
94964484 TTATAGAAAA
1 TTATA-AAAA
*
94964494 CGGTATAGAAAA
1 --TTATA-AAAA
94964506 -TATTAAAAA
1 TTA-TAAAAA
94964515 TTATATAAAA
1 TTATA-AAAA
*
94964525 TCATATAAAA
1 TTATA-AAAA
*
94964535 -TA-GAAAA
1 TTATAAAAA
94964542 TTATATAAAA
1 TTATA-AAAA
94964552 TTA-AAAAA
1 TTATAAAAA
94964560 TTTATAAAA
1 -TTATAAAA
94964569 TTGAAAATAA
Statistics
Matches: 107, Mismatches: 12, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
7 4 0.04
8 6 0.06
9 34 0.32
10 47 0.44
11 7 0.07
12 9 0.08
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (9 bp):
TTATAAAAA
Found at i:94964547 original size:17 final size:17
Alignment explanation
Indices: 94964521--94964587 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
94964511 AAAATTATAT
*
94964521 AAAATCATATAAAATAG
1 AAAATTATATAAAATAG
*
94964538 AAAATTATATAAAATTAA
1 AAAATTATATAAAA-TAG
*
94964556 AAAATT-TATAAAATTG
1 AAAATTATATAAAATAG
*
94964572 AAAATAATAATAAAAT
1 AAAATTAT-ATAAAAT
94964588 GTAAATGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
16 6 0.14
17 21 0.50
18 15 0.36
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAATTATATAAAATAG
Found at i:94964568 original size:27 final size:27
Alignment explanation
Indices: 94964466--94964570 Score: 81
Period size: 27 Copynumber: 3.7 Consensus size: 27
94964456 ATAAAAGATA
*
94964466 ATAAAAATATTTTAAAAATTATAGAAAACGGT
1 ATAAAAA-A-TTTAAAAATTATATAAAA---T
*
94964498 ATAGAAAATATTAAAAATTATATAAAAT
1 ATAAAAAAT-TTAAAAATTATATAAAAT
*
94964526 CATATAAAA--TAGAAAATTATATAAAAT
1 -ATAAAAAATTTA-AAAATTATATAAAAT
94964553 -TAAAAAATTTATAAAATT
1 ATAAAAAATTTA-AAAATT
94964571 GAAAATAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
25 6 0.10
26 2 0.03
27 23 0.37
28 1 0.02
29 7 0.11
30 1 0.02
31 17 0.27
32 6 0.10
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (27 bp):
ATAAAAAATTTAAAAATTATATAAAAT
Found at i:94967878 original size:12 final size:12
Alignment explanation
Indices: 94967861--94967886 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94967851 ACATAAATCA
94967861 AAATAATAAAAT
1 AAATAATAAAAT
94967873 AAATAATAAAAT
1 AAATAATAAAAT
94967885 AA
1 AA
94967887 GATTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAAAAT
Found at i:94968573 original size:4 final size:4
Alignment explanation
Indices: 94968564--94968597 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
94968554 AACTTGAGCC
94968564 TTTA TTTA TTTA TTTA TTTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T
94968598 GTACAAGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:94968586 original size:17 final size:17
Alignment explanation
Indices: 94968564--94968597 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
94968554 AACTTGAGCC
94968564 TTTATTTATTTATTTAT
1 TTTATTTATTTATTTAT
94968581 TTTATTTATTTATTTAT
1 TTTATTTATTTATTTAT
94968598 GTACAAGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTATTTATTTAT
Found at i:94981116 original size:27 final size:27
Alignment explanation
Indices: 94981072--94981123 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
94981062 TGCTAGAAAC
94981072 AGTAAATGTGGCAAAGCCACCAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTATT
* * *
94981099 AGTAATTGTGGTATAGCCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
94981124 ACAATGAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTATT
Found at i:94981322 original size:27 final size:27
Alignment explanation
Indices: 94981292--94981445 Score: 202
Period size: 27 Copynumber: 5.7 Consensus size: 27
94981282 GGCATAATTA
* *
94981292 TCATTTTACCATACAAGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
*
94981319 TCATTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
94981346 TCATTTTACCCTACAGGGGTATTAC-G
1 TCATTTTACCCTACAGGGGTATTACAG
* * *
94981372 TTCATTTTACCCTACAAGGGTGTTACGG
1 -TCATTTTACCCTACAGGGGTATTACAG
* *
94981400 TTATTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
**
94981427 TCATTTTATTCTACAGGGG
1 TCATTTTACCCTACAGGGG
94981446 CATCACGGTC
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 109 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACAG
Found at i:94981427 original size:81 final size:81
Alignment explanation
Indices: 94981292--94981445 Score: 254
Period size: 81 Copynumber: 1.9 Consensus size: 81
94981282 GGCATAATTA
94981292 TCATTTTACCATACAAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCC
1 TCATTTTACCATACAAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCC
94981357 TACAGGGGTATTACGT
66 TACAGGGGTATTACGT
* * * * **
94981373 TCATTTTACCCTACAAGGGTGTTACGGTTATTTTACCCTACAGGGGCATTACAGTCATTTTATTC
1 TCATTTTACCATACAAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCC
94981438 TACAGGGG
66 TACAGGGG
94981446 CATCACGGTC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (81 bp):
TCATTTTACCATACAAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCC
TACAGGGGTATTACGT
Found at i:94985707 original size:23 final size:24
Alignment explanation
Indices: 94985681--94985733 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
94985671 AGCTCAGATA
* *
94985681 AGCTTCCTGATAT-GCTCTTTATG
1 AGCTTCCTGAAATGGCTCTGTATG
*
94985704 AGCTTCCTGAAATGGCTCTGTGTG
1 AGCTTCCTGAAATGGCTCTGTATG
94985728 AGCTTC
1 AGCTTC
94985734 TCGTTACAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (24 bp):
AGCTTCCTGAAATGGCTCTGTATG
Found at i:94995749 original size:17 final size:17
Alignment explanation
Indices: 94995724--94995761 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
94995714 GCGATATACG
*
94995724 AACTTTGATAGTGTGAT
1 AACTGTGATAGTGTGAT
94995741 AACTGTGATAGTGTGAT
1 AACTGTGATAGTGTGAT
94995758 AACT
1 AACT
94995762 CCTGACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.37
Consensus pattern (17 bp):
AACTGTGATAGTGTGAT
Found at i:95003590 original size:24 final size:24
Alignment explanation
Indices: 95003563--95003638 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
95003553 CCATCCAGAG
95003563 CTTCCCGATATGGATCTTTATGAA
1 CTTCCCGATATGGATCTTTATGAA
* * * *
95003587 CTTCCCGACAAGGTTCTTTGTGAA
1 CTTCCCGATATGGATCTTTATGAA
* * *
95003611 CTTCCCAATTATGGCTC-TTATGAG
1 CTTCCCGA-TATGGATCTTTATGAA
95003635 CTTC
1 CTTC
95003639 TCGTTATATA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 36 0.88
25 5 0.12
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (24 bp):
CTTCCCGATATGGATCTTTATGAA
Found at i:95003712 original size:25 final size:25
Alignment explanation
Indices: 95003623--95003709 Score: 69
Period size: 24 Copynumber: 3.6 Consensus size: 25
95003613 TCCCAATTAT
*
95003623 GGCTCT-TATGAGCTTCTCGTTATATA
1 GGCTCTGTATGAGCTTCTCG--AAATA
* *
95003649 -GCT-TGGATAAGCTTC-C-AAATA
1 GGCTCTGTATGAGCTTCTCGAAATA
*
95003670 GGCTCTTTATGAGCTTCTCGAAAT-
1 GGCTCTGTATGAGCTTCTCGAAATA
*
95003694 GGCTCTGTGTGAGCTT
1 GGCTCTGTATGAGCTT
95003710 TCTGTTACAA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
21 4 0.08
22 3 0.06
23 9 0.19
24 17 0.35
25 15 0.31
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.37
Consensus pattern (25 bp):
GGCTCTGTATGAGCTTCTCGAAATA
Found at i:95008303 original size:3 final size:3
Alignment explanation
Indices: 95008295--95008342 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
95008285 AAAATTTTCA
95008295 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95008343 CTGGGTTAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:95019354 original size:32 final size:33
Alignment explanation
Indices: 95019264--95019366 Score: 118
Period size: 33 Copynumber: 3.2 Consensus size: 33
95019254 GGTGTACATT
* * **
95019264 CCTTTCCAAGTGGTACACACAAAGTATAACTTT
1 CCTTTCCAAATGGTACACACAAAGTATACCTAA
* * * *
95019297 TCTTTTCATATGGTATACACAAAGTATACCTAA
1 CCTTTCCAAATGGTACACACAAAGTATACCTAA
*
95019330 CCTTTCCAAAT-GTACACACAAAGTATACATAA
1 CCTTTCCAAATGGTACACACAAAGTATACCTAA
95019362 CCTTT
1 CCTTT
95019367 TCAAGTTGTA
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
32 24 0.42
33 33 0.58
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAATGGTACACACAAAGTATACCTAA
Found at i:95020098 original size:20 final size:21
Alignment explanation
Indices: 95020061--95020102 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
95020051 AAGTGGTTTA
*
95020061 TCTATCAATAATCTTTCATTT
1 TCTATCAATAAACTTTCATTT
95020082 TCTATCAA-AAACTTTCATTT
1 TCTATCAATAAACTTTCATTT
95020102 T
1 T
95020103 ACAGCATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (21 bp):
TCTATCAATAAACTTTCATTT
Found at i:95022690 original size:131 final size:131
Alignment explanation
Indices: 95022441--95022766 Score: 374
Period size: 131 Copynumber: 2.5 Consensus size: 131
95022431 ATAGATGAGC
* * * *
95022441 TTGTTCATGATATTAAATCAAATAAACTTAGGTTGTGATCTTAGATC-AGAGAA-TCT--TGATA
1 TTGTTCATGATCTTAAATCAAATAAACTTAGGTTGTGATCTTAAATCAACAAAACT-TAATGATA
* * *
95022502 TTAGCTCCGATCTTAAATCAATGAGCTGTCTGGAGTAGCAATCTTAAATCAGCTAACTCAAATAA
65 TCAGCTCCGATCTTAAATCAACGAGCTGTCTGGAGTAGCAATATTAAATCAGCTAACTCAAATAA
**
95022567 GG
130 AA
* * *
95022569 TTGTTCATGATCTTAAATCAAATGAACTTAGATTGTGATCTTAAATCAATAAAACTTAATGATAT
1 TTGTTCATGATCTTAAATCAAATAAACTTAGGTTGTGATCTTAAATCAACAAAACTTAATGATAT
* * * * * *
95022634 CAGCTGCGATCTTAAATCAACGAGTTGTTTGGAGTATCGATATTAAATCAGTTAACTCAAATAAA
66 CAGCTCCGATCTTAAATCAACGAGCTGTCTGGAGTAGCAATATTAAATCAGCTAACTCAAATAAA
95022699 A
131 A
* ** * * * *
95022700 TTGTTCGTGATCTTAAA-CTGTATAAAGTTAGGTTGTGATTTTAAATCAACGAACCTTAATGATA
1 TTGTTCATGATCTTAAATC-AAATAAACTTAGGTTGTGATCTTAAATCAACAAAACTTAATGATA
95022764 TCA
65 TCA
95022767 ACTTTGATAT
Statistics
Matches: 166, Mismatches: 27, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
128 43 0.26
129 5 0.03
130 2 0.01
131 116 0.70
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (131 bp):
TTGTTCATGATCTTAAATCAAATAAACTTAGGTTGTGATCTTAAATCAACAAAACTTAATGATAT
CAGCTCCGATCTTAAATCAACGAGCTGTCTGGAGTAGCAATATTAAATCAGCTAACTCAAATAAA
A
Found at i:95022816 original size:36 final size:37
Alignment explanation
Indices: 95022731--95022820 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 37
95022721 ATAAAGTTAG
*
95022731 GTTGTGATTTTAAATCAACGAACCTTAATGATATCAA
1 GTTGTGATATTAAATCAACGAACCTTAATGATATCAA
* **
95022768 CTT-TGATATTAAATCAGTGAACCTTAATGATATC-A
1 GTTGTGATATTAAATCAACGAACCTTAATGATATCAA
* *
95022803 GTTGCGATCTTAAATCAA
1 GTTGTGATATTAAATCAA
95022821 TGAGTTGTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
35 3 0.07
36 39 0.89
37 2 0.05
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (37 bp):
GTTGTGATATTAAATCAACGAACCTTAATGATATCAA
Found at i:95022942 original size:131 final size:131
Alignment explanation
Indices: 95022776--95023014 Score: 318
Period size: 131 Copynumber: 1.8 Consensus size: 131
95022766 AACTTTGATA
** * ** ** * * * *
95022776 TTAAATCAGTGAACCTTAATGATATCAGTTGCGATCTTAAATCAATGAGTTGTTTGGAGTTGTGA
1 TTAAATCAGTGAACCTTAATGATATCAACTACGATCTTAAATCAACAAACTATGTGGAGTAGCGA
*
95022841 TCTTAAATCAACTAACTCAAAT-AAGATTGTTCATGATCTTAAATCAAATGAACTTAGGTTGCGA
66 TCTTAAATCAACTAACTCAAATAAAG-TTGTTCATGATATTAAATCAAATGAACTTAGGTTGCGA
95022905 TC
130 TC
* *
95022907 TTAAATCAGTGAACTTTAATGATATCAACTACGATCTTAAATCAGCAAACTATGTGGAGTAGCGA
1 TTAAATCAGTGAACCTTAATGATATCAACTACGATCTTAAATCAACAAACTATGTGGAGTAGCGA
**
95022972 TCTTAAATCAGTTAACTCAAATAAAGTTGTTCATGATATTAAA
66 TCTTAAATCAACTAACTCAAATAAAGTTGTTCATGATATTAAA
95023015 GTAATCGATA
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
131 88 0.97
132 3 0.03
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (131 bp):
TTAAATCAGTGAACCTTAATGATATCAACTACGATCTTAAATCAACAAACTATGTGGAGTAGCGA
TCTTAAATCAACTAACTCAAATAAAGTTGTTCATGATATTAAATCAAATGAACTTAGGTTGCGAT
C
Found at i:95022951 original size:167 final size:167
Alignment explanation
Indices: 95022605--95022951 Score: 455
Period size: 167 Copynumber: 2.1 Consensus size: 167
95022595 CTTAGATTGT
*
95022605 GATCTTAAATCAATAAAACTTAATGATATCAGCTGCGATCTTAAATCAACGAGTTGTTTGGAGTA
1 GATCTTAAATCAGTAAAACTTAATGATATCAGCTGCGATCTTAAATCAACGAGTTGTTTGGAGTA
** * ** *
95022670 TCGATATTAAATCAGTTAACTCAAATAAAATTGTTCGTGATCTTAAACTGTATAAAGTTAGGTTG
66 TCGATATTAAATCAACTAACTCAAATAAAATTGTTCATGATCTTAAACTAAATAAACTTAGGTTG
* * **
95022735 TGATTTTAAATCAACGAACCTTAATGATATCAACTTT
131 CGATCTTAAATCAACGAACCTTAATGATATCAACTAC
* * * * *
95022772 GATATTAAATCAGTGAACCTTAATGATATCAGTTGCGATCTTAAATCAATGAGTTGTTTGGAGT-
1 GATCTTAAATCAGTAAAACTTAATGATATCAGCTGCGATCTTAAATCAACGAGTTGTTTGGAGTA
* * * *
95022836 TGTGATCTTAAATCAACTAACTCAAATAAGATTGTTCATGATCTTAAA-TCAAATGAACTTAGGT
66 T-CGATATTAAATCAACTAACTCAAATAAAATTGTTCATGATCTTAAACT-AAATAAACTTAGGT
** *
95022900 TGCGATCTTAAATCAGTGAACTTTAATGATATCAACTAC
129 TGCGATCTTAAATCAACGAACCTTAATGATATCAACTAC
95022939 GATCTTAAATCAG
1 GATCTTAAATCAG
95022952 CAAACTATGT
Statistics
Matches: 154, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
166 2 0.01
167 152 0.99
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (167 bp):
GATCTTAAATCAGTAAAACTTAATGATATCAGCTGCGATCTTAAATCAACGAGTTGTTTGGAGTA
TCGATATTAAATCAACTAACTCAAATAAAATTGTTCATGATCTTAAACTAAATAAACTTAGGTTG
CGATCTTAAATCAACGAACCTTAATGATATCAACTAC
Found at i:95030910 original size:19 final size:17
Alignment explanation
Indices: 95030886--95030920 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
95030876 AAACAGGCTA
95030886 TTCTTTGTCTTTTATTTCT
1 TTCTTTGT-TTTT-TTTCT
95030905 TTCTTTGTTTTTTTTC
1 TTCTTTGTTTTTTTTC
95030921 ATGGCAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.03, C:0.14, G:0.06, T:0.77
Consensus pattern (17 bp):
TTCTTTGTTTTTTTTCT
Found at i:95034624 original size:17 final size:18
Alignment explanation
Indices: 95034599--95034632 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95034589 ATTAAGTACT
95034599 TCTAGAATTCA-ATTTAA
1 TCTAGAATTCATATTTAA
*
95034616 TCTATAATTCATATTTA
1 TCTAGAATTCATATTTA
95034633 TGTAAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (18 bp):
TCTAGAATTCATATTTAA
Found at i:95035144 original size:15 final size:16
Alignment explanation
Indices: 95035124--95035155 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
95035114 AGAGATATGA
95035124 TGATTTTA-GCTTATT
1 TGATTTTATGCTTATT
95035139 TGATTTTATGCTTATT
1 TGATTTTATGCTTATT
95035155 T
1 T
95035156 ACTGTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (16 bp):
TGATTTTATGCTTATT
Found at i:95037068 original size:17 final size:15
Alignment explanation
Indices: 95037037--95037075 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
95037027 AAACGGATTA
95037037 TTCTTTTTCCTATTTT
1 TTCTTTTTCCTA-TTT
*
95037053 TTCTTTCTTTCTATTT
1 TTCTTT-TTCCTATTT
95037069 TTCTTTT
1 TTCTTTT
95037076 CATGGTAGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 15 0.71
17 5 0.24
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTTTCCTATTT
Found at i:95046026 original size:25 final size:26
Alignment explanation
Indices: 95045982--95046042 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 26
95045972 CATCCTTTGT
*
95045982 TCTGTTATACGATTGTTATGAAAATC
1 TCTGTGATACGATTGTTATGAAAATC
95046008 TCTGTGATAC-ATTGTTATGAAAATC
1 TCTGTGATACGATTGTTATGAAAATC
95046033 TCTGTGATAC
1 TCTGTGATAC
95046043 CCTGATTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 25 0.74
26 9 0.26
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (26 bp):
TCTGTGATACGATTGTTATGAAAATC
Found at i:95050577 original size:11 final size:12
Alignment explanation
Indices: 95050554--95050578 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95050544 TAAAATCAAT
95050554 AAAAAGGCAAAA
1 AAAAAGGCAAAA
95050566 AAAAAGGCAAAA
1 AAAAAGGCAAAA
95050578 A
1 A
95050579 TCAGCCATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAGGCAAAA
Found at i:95060469 original size:39 final size:39
Alignment explanation
Indices: 95060415--95060493 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
95060405 CAAAAGTCTC
95060415 TGAGGGGGGAGAAATGTAACATCCCGAATTAGGACTTAG
1 TGAGGGGGGAGAAATGTAACATCCCGAATTAGGACTTAG
95060454 TGAGGGGGGAGAAATGTAACATCCCGAATTAGGACTTAG
1 TGAGGGGGGAGAAATGTAACATCCCGAATTAGGACTTAG
95060493 T
1 T
95060494 CAGAATAGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.22
Consensus pattern (39 bp):
TGAGGGGGGAGAAATGTAACATCCCGAATTAGGACTTAG
Found at i:95063190 original size:19 final size:19
Alignment explanation
Indices: 95063166--95063207 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
95063156 CACTACAACA
95063166 CCATGAGAAGTTAACCAAT
1 CCATGAGAAGTTAACCAAT
95063185 CCATGAGAAGTTAACCAAT
1 CCATGAGAAGTTAACCAAT
95063204 CCAT
1 CCAT
95063208 CCCAAGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.21
Consensus pattern (19 bp):
CCATGAGAAGTTAACCAAT
Found at i:95069446 original size:13 final size:13
Alignment explanation
Indices: 95069424--95069453 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
95069414 AACAAATATT
*
95069424 ATTTATTTAATTA
1 ATTTAATTAATTA
95069437 ATTTAATTAATTA
1 ATTTAATTAATTA
95069450 ATTT
1 ATTT
95069454 TCCAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTAATTAATTA
Found at i:95069462 original size:16 final size:15
Alignment explanation
Indices: 95069430--95069471 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
95069420 TATTATTTAT
95069430 TTAATTAA-TTT-AA
1 TTAATTAATTTTCAA
95069443 TTAATTAATTTTCCAA
1 TTAATTAATTTT-CAA
*
95069459 TTAAATAATTTTC
1 TTAATTAATTTTC
95069472 TCAACGCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 8 0.32
14 3 0.12
15 1 0.04
16 13 0.52
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATTAATTTTCAA
Found at i:95078436 original size:26 final size:26
Alignment explanation
Indices: 95078367--95078501 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
95078357 TGATACAAAT
*
95078367 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
95078393 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
95078418 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
95078444 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
95078470 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
95078496 TGATAA
1 TGATAA
95078502 GAATTTCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:95080562 original size:136 final size:136
Alignment explanation
Indices: 95080282--95080566 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
95080272 GAGTAGTCTC
95080282 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
95080347 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGTCCAGTACCA
66 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
95080412 CTGTTA
131 CTGTTA
*
95080418 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
95080482 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
95080547 ACTGTTA
130 ACTGTTA
**
95080554 CCTGAATGGGCTT
1 CCCAAATGGGCTT
95080567 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 82 0.57
136 61 0.43
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:95082022 original size:105 final size:107
Alignment explanation
Indices: 95081896--95082142 Score: 347
Period size: 107 Copynumber: 2.3 Consensus size: 107
95081886 AATATAAAAG
* *
95081896 TAAATAAATTAAATAAAGTCAATATAGTACTGACATAGCATTT-TCCCCCCTT-TTTTTTGTTAG
1 TAAATAAATTAAATAAAGTCAATATAGTACTGACATAGCATTTGTCCCCCATTATTTTTTGTT-C
* *
95081959 TT-TTTGGGTTTATTATATAAGTTGTCTTTTGTATGTGTCTAT
65 TTGTTCGGGTTTATTATATAAGTTATCTTTTGTATGTGTCTAT
* * * * *
95082001 TAAACAAATTAAATAAAGTCAACACAGTACTGGCATAGCATTTGTCCCTCATTATTTTTTGTTCT
1 TAAATAAATTAAATAAAGTCAATATAGTACTGACATAGCATTTGTCCCCCATTATTTTTTGTTCT
*
95082066 TGTTCGGGTTTATTATATAAGTTATCTTTTGTATGTGTCTGT
66 TGTTCGGGTTTATTATATAAGTTATCTTTTGTATGTGTCTAT
* * *
95082108 TAAATAAGTTAAATAAAGTTAATATAGTATTGACA
1 TAAATAAATTAAATAAAGTCAATATAGTACTGACA
95082143 ATAGACATAG
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
105 39 0.32
106 9 0.07
107 74 0.61
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (107 bp):
TAAATAAATTAAATAAAGTCAATATAGTACTGACATAGCATTTGTCCCCCATTATTTTTTGTTCT
TGTTCGGGTTTATTATATAAGTTATCTTTTGTATGTGTCTAT
Found at i:95084620 original size:16 final size:17
Alignment explanation
Indices: 95084599--95084633 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
95084589 AATTAATTTA
*
95084599 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
95084615 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
95084632 AA
1 AA
95084634 CCCAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:95085435 original size:37 final size:37
Alignment explanation
Indices: 95085382--95085452 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
95085372 CCAACTTTCA
95085382 GTTCCTTATTTATTCAAACTCAAGCTTTTACTTGTCG
1 GTTCCTTATTTATTCAAACTCAAGCTTTTACTTGTCG
*
95085419 GTTCCTTATTTGTTCAAACTCAAGCTTTTACTTG
1 GTTCCTTATTTATTCAAACTCAAGCTTTTACTTG
95085453 CATCAAAGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (37 bp):
GTTCCTTATTTATTCAAACTCAAGCTTTTACTTGTCG
Found at i:95087654 original size:26 final size:26
Alignment explanation
Indices: 95087605--95087654 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
95087595 TAATTTTTTA
*
95087605 TTATATTTAAATTTAAAATTTAATCC
1 TTATATTTAAATTTAAAATATAATCC
* **
95087631 TTATATTTATATTTTTAATATAAT
1 TTATATTTAAATTTAAAATATAAT
95087655 TTATTCAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (26 bp):
TTATATTTAAATTTAAAATATAATCC
Found at i:95088291 original size:28 final size:27
Alignment explanation
Indices: 95088260--95088312 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
95088250 ATTTTTCATA
*
95088260 TTTTCAATAAAAAATTTAAAAATTATC
1 TTTTTAATAAAAAATTTAAAAATTATC
*
95088287 TTTTTTATAAAAAATTTAAAAATTAT
1 TTTTTAATAAAAAATTTAAAAATTAT
95088313 GAAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
TTTTTAATAAAAAATTTAAAAATTATC
Found at i:95089600 original size:30 final size:32
Alignment explanation
Indices: 95089565--95089643 Score: 108
Period size: 30 Copynumber: 2.5 Consensus size: 32
95089555 TCAATATCTC
95089565 AAAATAAATATAAAGACTAAATC-TAAAATTT
1 AAAATAAATATAAAGACTAAATCTTAAAATTT
* *
95089596 -AAATAAATATAAAAACTAAATCTTAAATTTT
1 AAAATAAATATAAAGACTAAATCTTAAAATTT
* *
95089627 AAAAAAAATACAAAGAC
1 AAAATAAATATAAAGAC
95089644 ATCTAGGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.51
31 7 0.17
32 13 0.32
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.27
Consensus pattern (32 bp):
AAAATAAATATAAAGACTAAATCTTAAAATTT
Found at i:95101324 original size:11 final size:11
Alignment explanation
Indices: 95101305--95101334 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95101295 ATGTCAAATC
95101305 ATCAAGAATAA
1 ATCAAGAATAA
*
95101316 ATTAAGAATAA
1 ATCAAGAATAA
95101327 ATCAAGAA
1 ATCAAGAA
95101335 CAAAACTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (11 bp):
ATCAAGAATAA
Found at i:95102628 original size:94 final size:96
Alignment explanation
Indices: 95102522--95102711 Score: 267
Period size: 95 Copynumber: 2.0 Consensus size: 96
95102512 ACATGTCCAT
* * * * * *
95102522 TTTTTTTGACATGACAAGATAATGGCTAAAATTCAATTCTAATTCGTTTAA-TTTTTATGGTTAA
1 TTTTTTTGACATGAAAAGATAATGGCTAAAATTCAATTCTAATACCTCTAATTTTTTATAGCTAA
*
95102586 ATTTAAGTTTTGATCCCTATATTTCCCTCAA
66 ATTTAAGTTTTAATCCCTATATTTCCCTCAA
*
95102617 TTTTTTT-ACATGAAAAGATAATGGCTAAATTTCAATTCTAATACCTCTAATTTTTTATAGCTAA
1 TTTTTTTGACATGAAAAGATAATGGCTAAAATTCAATTCTAATACCTCTAATTTTTTATAGCTAA
* * *
95102681 ATTTTAGTTTTAATCTCTATATTTCGCTCAA
66 ATTTAAGTTTTAATCCCTATATTTCCCTCAA
95102712 ATCAATAGCT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
94 38 0.46
95 45 0.54
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.46
Consensus pattern (96 bp):
TTTTTTTGACATGAAAAGATAATGGCTAAAATTCAATTCTAATACCTCTAATTTTTTATAGCTAA
ATTTAAGTTTTAATCCCTATATTTCCCTCAA
Found at i:95107631 original size:11 final size:11
Alignment explanation
Indices: 95107610--95107657 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
95107600 CTCCTCCTCG
95107610 TCTTTT-TTTT
1 TCTTTTCTTTT
95107620 TCTTTTTCTTTT
1 TC-TTTTCTTTT
* *
95107632 TCTCTTCTTTC
1 TCTTTTCTTTT
*
95107643 TCTTTTCTTCT
1 TCTTTTCTTTT
95107654 TCTT
1 TCTT
95107658 CTATTGCCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 2 0.06
11 23 0.74
12 6 0.19
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:95107632 original size:17 final size:17
Alignment explanation
Indices: 95107610--95107657 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
95107600 CTCCTCCTCG
* *
95107610 TCTTTTT-TTTTCTTTT
1 TCTTTTTCTCTTCTTTC
95107626 TCTTTTTCTCTTCTTTC
1 TCTTTTTCTCTTCTTTC
95107643 TC-TTTTCTTCTTCTT
1 TCTTTTTC-TCTTCTT
95107658 CTATTGCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TCTTTTTCTCTTCTTTC
Found at i:95107647 original size:33 final size:34
Alignment explanation
Indices: 95107591--95107657 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
95107581 TCTTCGAGGG
*
95107591 TTTCTTTTTCTCCTCCTCGTCTTTT-TTTTTCTT
1 TTTCTTTTTCTCCTCCTCGTCTTTTCTTCTTCTT
* *
95107624 TTTCTTTTTCTCTTCTTTC-TCTTTTCTTCTTCTT
1 TTTCTTTTTCTCCTC-CTCGTCTTTTCTTCTTCTT
95107658 CTATTGCCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 20 0.69
34 9 0.31
ACGTcount: A:0.00, C:0.27, G:0.01, T:0.72
Consensus pattern (34 bp):
TTTCTTTTTCTCCTCCTCGTCTTTTCTTCTTCTT
Found at i:95116171 original size:16 final size:15
Alignment explanation
Indices: 95116142--95116205 Score: 76
Period size: 16 Copynumber: 4.1 Consensus size: 15
95116132 CGTTTGGTTC
95116142 ACTGTAA-TGAAATAGG
1 ACTGTAATTG-AATA-G
95116158 ACTGTAATTGAATAG
1 ACTGTAATTGAATAG
95116173 AGCTGTAATTGAATAG
1 A-CTGTAATTGAATAG
*
95116189 ACCTGTAATAGAATAG
1 A-CTGTAATTGAATAG
95116205 A
1 A
95116206 GATGTAATCA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.05
16 40 0.91
17 2 0.05
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (15 bp):
ACTGTAATTGAATAG
Found at i:95116179 original size:32 final size:31
Alignment explanation
Indices: 95116143--95116213 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
95116133 GTTTGGTTCA
*
95116143 CTGTAATGAAATAGGA-CTGTAATTGAATAGAG
1 CTGTAATG-AATA-GACCTGTAATAGAATAGAG
95116175 CTGTAATTGAATAGACCTGTAATAGAATAGAG
1 CTGTAA-TGAATAGACCTGTAATAGAATAGAG
*
95116207 ATGTAAT
1 CTGTAAT
95116214 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 3 0.09
32 30 0.86
33 2 0.06
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (31 bp):
CTGTAATGAATAGACCTGTAATAGAATAGAG
Found at i:95116211 original size:16 final size:16
Alignment explanation
Indices: 95116159--95116213 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
95116149 TGAAATAGGA
95116159 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
*
95116175 CTGTAATTGAATAGAC
1 CTGTAATTGAATAGAG
*
95116191 CTGTAATAGAATAGAG
1 CTGTAATTGAATAGAG
*
95116207 ATGTAAT
1 CTGTAAT
95116214 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:95116486 original size:20 final size:21
Alignment explanation
Indices: 95116460--95116509 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
95116450 ATTATTATTA
95116460 AATATAATTTAATAAAATAAT
1 AATATAATTTAATAAAATAAT
*
95116481 -ATATAATTTAATAAAATCAT
1 AATATAATTTAATAAAATAAT
95116501 AATATAATT
1 AATATAATT
95116510 ATTATTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AATATAATTTAATAAAATAAT
Found at i:95116508 original size:57 final size:57
Alignment explanation
Indices: 95116392--95116516 Score: 162
Period size: 57 Copynumber: 2.2 Consensus size: 57
95116382 TTTTAATAAT
* * **
95116392 ATTATTATTGAAAATAATTTAATAAAAATAATAAATAATTTAACCATATTTTAACATA
1 ATTATTATT-AAAATAATTTAATAAAAATAATAAATAATTTAACAAAATCATAACATA
* * *
95116450 ATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATAAAATCATAATATA
1 ATTATTATTAAA-ATAATTTAATAAAAATAATAAATAATTTAACAAAATCATAACATA
95116507 ATTATTATTA
1 ATTATTATTA
95116517 TATGAATTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 40 0.68
58 19 0.32
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (57 bp):
ATTATTATTAAAATAATTTAATAAAAATAATAAATAATTTAACAAAATCATAACATA
Found at i:95116800 original size:16 final size:16
Alignment explanation
Indices: 95116776--95116806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95116766 CATATGTTAT
*
95116776 AAAATTTTACAACATA
1 AAAAATTTACAACATA
95116792 AAAAATTTACAACAT
1 AAAAATTTACAACAT
95116807 TGTAATGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATTTACAACATA
Found at i:95119270 original size:26 final size:26
Alignment explanation
Indices: 95119234--95119369 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
95119224 TGATACAAAT
*
95119234 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
95119260 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95119286 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95119312 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
95119338 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95119364 TGATAA
1 TGATAA
95119370 GAATATCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:95120908 original size:26 final size:26
Alignment explanation
Indices: 95120856--95120908 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
95120846 TTTACAGTTT
*
95120856 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
95120882 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
95120908 T
1 T
95120909 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:95125100 original size:20 final size:21
Alignment explanation
Indices: 95125077--95125126 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 21
95125067 GATAATAGGT
95125077 TAGGTAAATGTT-CATGATAA
1 TAGGTAAATGTTCCATGATAA
95125097 TAGGTTAGTAAATGTTCCATGATAA
1 TA-G---GTAAATGTTCCATGATAA
95125122 TAGGT
1 TAGGT
95125127 TAGGTAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
20 2 0.08
21 3 0.12
24 10 0.40
25 10 0.40
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (21 bp):
TAGGTAAATGTTCCATGATAA
Found at i:95125140 original size:26 final size:25
Alignment explanation
Indices: 95125066--95125198 Score: 214
Period size: 25 Copynumber: 5.2 Consensus size: 25
95125056 TGATACAAAT
95125066 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
95125091 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
95125116 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
95125142 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
95125167 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
95125193 TGATAA
1 TGATAA
95125199 GAATTCATGT
Statistics
Matches: 104, Mismatches: 1, Indels: 5
0.95 0.01 0.05
Matches are distributed among these distances:
24 9 0.09
25 51 0.49
26 44 0.42
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:95125169 original size:51 final size:50
Alignment explanation
Indices: 95125066--95125198 Score: 214
Period size: 51 Copynumber: 2.6 Consensus size: 50
95125056 TGATACAAAT
95125066 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGTAAATGTTCCA
*
95125116 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATAGGTTA-GTAAATGTTCCA
*
95125167 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATG-TTCATGATAA
95125199 GAATTCATGT
Statistics
Matches: 78, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
50 23 0.29
51 44 0.56
52 11 0.14
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (50 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGTAAATGTTCCA
Found at i:95126711 original size:25 final size:26
Alignment explanation
Indices: 95126683--95126734 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
95126673 TTTACAGTTT
95126683 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
95126708 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
95126734 T
1 T
95126735 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:95129328 original size:46 final size:46
Alignment explanation
Indices: 95129261--95129353 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
95129251 TTTATTCAAA
95129261 TAAAATCTAAAACTCCATATACATTACATTCTTACCATAACATGAT
1 TAAAATCTAAAACTCCATATACATTACATTCTTACCATAACATGAT
95129307 TAAAATCTAAAACTCCATATACATTACATTCTTACCATAACATGAT
1 TAAAATCTAAAACTCCATATACATTACATTCTTACCATAACATGAT
95129353 T
1 T
95129354 TGTTTGTAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (46 bp):
TAAAATCTAAAACTCCATATACATTACATTCTTACCATAACATGAT
Found at i:95130475 original size:64 final size:64
Alignment explanation
Indices: 95130402--95130618 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
95130392 CTAGGCCAGA
* *
95130402 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
95130466 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
95130528 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
95130538 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
95130602 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
95130619 TGCAAAATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:95130612 original size:136 final size:136
Alignment explanation
Indices: 95130368--95130789 Score: 763
Period size: 136 Copynumber: 3.1 Consensus size: 136
95130358 TATTGGGCCT
** * *
95130368 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
95130433 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
95130498 ATATGC
131 ATATGC
95130504 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
95130569 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAAAATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
95130634 ATATGC
131 ATATGC
95130640 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
95130705 AGACCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
95130770 CATATGC
130 CATATGC
95130777 AAGCCCATTTGGG
1 AAGCCCATTTGGG
95130790 GAGACTACTC
Statistics
Matches: 276, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 254 0.92
137 22 0.08
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:95131072 original size:25 final size:27
Alignment explanation
Indices: 95131035--95131088 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
95131025 TCAAACATGC
95131035 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
95131061 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
95131087 AT
1 AT
95131089 AAACAGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:95132593 original size:26 final size:26
Alignment explanation
Indices: 95132557--95132666 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
95132547 CATGAAATTC
*
95132557 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
95132583 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
95132609 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
95132635 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95132661 TTATCA
1 TTATCA
95132667 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95136548 original size:64 final size:64
Alignment explanation
Indices: 95136475--95136691 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
95136465 CTAGGCCAGA
* *
95136475 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
95136539 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
95136601 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
95136611 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
95136675 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
95136692 TGCAAAATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:95136685 original size:136 final size:136
Alignment explanation
Indices: 95136441--95136862 Score: 763
Period size: 136 Copynumber: 3.1 Consensus size: 136
95136431 TATTGGGCCT
** * *
95136441 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
95136506 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
95136571 ATATGC
131 ATATGC
95136577 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
95136642 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAAAATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
95136707 ATATGC
131 ATATGC
95136713 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
95136778 AGACCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
95136843 CATATGC
130 CATATGC
95136850 AAGCCCATTTGGG
1 AAGCCCATTTGGG
95136863 GAGACTACTC
Statistics
Matches: 276, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 254 0.92
137 22 0.08
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:95137147 original size:25 final size:27
Alignment explanation
Indices: 95137110--95137163 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
95137100 TCAAACATGC
95137110 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
95137136 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
95137162 AT
1 AT
95137164 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:95137171 original size:26 final size:27
Alignment explanation
Indices: 95137127--95137202 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
95137117 TCAATTTAAC
* * *
95137127 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTCCAA
*
95137153 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTACAGTAATTTTCCA-A
* *
95137181 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
95137203 AGTTGCTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAA
Found at i:95138659 original size:14 final size:14
Alignment explanation
Indices: 95138642--95138684 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
95138632 CATGAAATTC
95138642 TTATCATGAAACAT
1 TTATCATGAAACAT
95138656 TTATC-T-AAACCA-
1 TTATCATGAAA-CAT
95138668 TTATCATGAAACAT
1 TTATCATGAAACAT
95138682 TTA
1 TTA
95138685 CCTAACCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 8 0.32
13 6 0.24
14 11 0.44
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (14 bp):
TTATCATGAAACAT
Found at i:95138678 original size:26 final size:26
Alignment explanation
Indices: 95138642--95138751 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
95138632 CATGAAATTC
* *
95138642 TTATCATGAAACATTTATCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
95138668 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
95138694 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
95138720 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95138746 TTATCA
1 TTATCA
95138752 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95138682 original size:13 final size:13
Alignment explanation
Indices: 95138642--95138682 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
95138632 CATGAAATTC
95138642 TTATCATGAAACA
1 TTATCATGAAACA
95138655 TTTATC-T-AAACCA
1 -TTATCATGAAA-CA
95138668 TTATCATGAAACA
1 TTATCATGAAACA
95138681 TT
1 TT
95138683 TACCTAACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (13 bp):
TTATCATGAAACA
Found at i:95145194 original size:50 final size:50
Alignment explanation
Indices: 95144994--95145263 Score: 253
Period size: 50 Copynumber: 5.6 Consensus size: 50
95144984 ATTGCGTGCT
* * * *
95144994 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACAT-TATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTC
* * ** * *
95145040 AGTGTAAGACCATATCTGGGACATGGCATCGGTATTGAGA--CGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTC
* * *
95145087 TAGTGTAAGA-CATGTCTGGGGACAT-GCATTGGCTACA-AAATGT----GTT
1 -AGTGTAAGACCATGTCT-GGGACATGGCATCGGC-ACAGATATGTGAGAGTC
*
95145133 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTC
* *
95145183 AGTGTAAGACCATGTATGGGACATGGCATCGGCACAAATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTC
**
95145233 AGTGTAAGACCATGTCTAAGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
95145264 ACTTGATAGA
Statistics
Matches: 181, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
45 19 0.10
46 28 0.15
47 28 0.15
48 28 0.15
49 1 0.01
50 77 0.43
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTC
Found at i:95145256 original size:100 final size:96
Alignment explanation
Indices: 95144991--95145263 Score: 292
Period size: 95 Copynumber: 2.9 Consensus size: 96
95144981 TTAATTGCGT
* * * * *
95144991 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACAT-TATGAGAGCCAGTGTAAGACCATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACAAATATGTGAGAGTCAGTGTAAGACCATG
* * **
95145054 TCTGGGACATGGCATCGGTATTGAGACGAGA
66 TCTAGGACATGGCATCGGCACAGAGACGAGA
* *
95145085 GCTAGTGTAAGACATGTCTGGGGACATGCATTGGCTACAAA-ATGT----GTTAGTGTAAGACCA
1 GCTAGTGTAAGACATGTCT-GGGACATGCATCGGC-ACAAATATGTGAGAGTCAGTGTAAGACCA
* *
95145145 TGTCTAGGACATGGCATCGGCACAGATATGTGAGA
64 TGTCTAGGACATGGCATCGGCACAGAGA--CGAGA
*
95145180 G-TCAGTGTAAGACCATGTATGGGACATGGCATCGGCACAAATATGTGAGAGTCAGTGTAAGACC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAAATATGTGAGAGTCAGTGTAAGACC
*
95145244 ATGTCTAAGACATGGCATCG
63 ATGTCTAGGACATGGCATCG
95145264 ACTTGATAGA
Statistics
Matches: 148, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
93 35 0.24
94 20 0.14
95 39 0.26
96 17 0.11
97 5 0.03
100 32 0.22
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (96 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACAAATATGTGAGAGTCAGTGTAAGACCATG
TCTAGGACATGGCATCGGCACAGAGACGAGA
Found at i:95148929 original size:43 final size:43
Alignment explanation
Indices: 95148868--95149003 Score: 245
Period size: 43 Copynumber: 3.2 Consensus size: 43
95148858 GCATGAAACT
95148868 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
95148911 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
95148954 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
95148997 CGGTGAT
1 CGGTGAT
95149004 TCGAGCAAGG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.11, C:0.24, G:0.35, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:95149260 original size:29 final size:28
Alignment explanation
Indices: 95149160--95149314 Score: 116
Period size: 29 Copynumber: 5.4 Consensus size: 28
95149150 ATGATTAGAG
* *
95149160 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
95149189 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
95149217 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
95149247 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
95149275 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
95149304 GCACTATGTGT
1 GCACTATGTGT
95149315 ACGAGATCGG
Statistics
Matches: 95, Mismatches: 24, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
28 23 0.24
29 64 0.67
30 8 0.08
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:95149345 original size:58 final size:58
Alignment explanation
Indices: 95149157--95149325 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
95149147 CGAATGATTA
*
95149157 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
95149215 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* * *
95149273 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTACGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
95149326 CAGTGGGCAC
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 30 0.28
58 77 0.72
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Done.