Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 323 of 345
Found at i:96861325 original size:5 final size:6
Alignment explanation
Indices: 96861294--96861322 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
96861284 GATTGAATCT
96861294 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
96861323 TAATTAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:96862603 original size:3 final size:3
Alignment explanation
Indices: 96862597--96862623 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
96862587 CATCGTCGTA
96862597 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
96862624 GTAAGACACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:96862890 original size:135 final size:135
Alignment explanation
Indices: 96862643--96862908 Score: 397
Period size: 135 Copynumber: 2.0 Consensus size: 135
96862633 TCGTTGGACC
* *
96862643 ATTCCTTCCTTATCCTCAACTTCTTGTTGACTTTCAGCAACATCAGCTTGCATTTGTACACGAGA
1 ATTCCTTCCTTATCATCAACTTCTTGTTGACTTTCAGCAACATCAGCTTGCATCTGTACACGAGA
* * * * *
96862708 AGTCATTAATCGGTTCATTTTCTCTAGGAAATCACTGTCAAATAAAGTTGAAACTCTTCCCCTGC
66 AGTCATTAATCGGTCCATTGTATCTAGGAAATCACTGCCAAACAAAGTTGAAACTCTTCCCCTGC
96862773 ATATA
131 ATATA
* * ** * *
96862778 ATTCCTTCCTTATCATCCACTTCTTGTTGACTTTCTGCCCCATCCGCTTGGATCTGTACACGAGA
1 ATTCCTTCCTTATCATCAACTTCTTGTTGACTTTCAGCAACATCAGCTTGCATCTGTACACGAGA
* *
96862843 AGTCATTAATCGGTCCATTGTATCTCGGAAATCACTGCCAAGCAAAGTTGAAACTCTTCCCCTGC
66 AGTCATTAATCGGTCCATTGTATCTAGGAAATCACTGCCAAACAAAGTTGAAACTCTTCCCCTGC
96862908 A
131 A
96862909 AGTAAATTGG
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
135 116 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (135 bp):
ATTCCTTCCTTATCATCAACTTCTTGTTGACTTTCAGCAACATCAGCTTGCATCTGTACACGAGA
AGTCATTAATCGGTCCATTGTATCTAGGAAATCACTGCCAAACAAAGTTGAAACTCTTCCCCTGC
ATATA
Found at i:96871283 original size:58 final size:57
Alignment explanation
Indices: 96871151--96871285 Score: 164
Period size: 58 Copynumber: 2.3 Consensus size: 57
96871141 TTTAATTCAT
* ***
96871151 ATAATAATTATATTAAGAATTTTAATAAATTATATATTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATATGGTTAAATTATATATTATTTTATTAAATTATATTTA
* * * *
96871209 ATAGTAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATATGGTTAAATTATATATTA-TTTTATTAAATTATATTTA
96871267 ATAATAATCT-TATTAAAAT
1 ATAATAAT-TATATTAAAAT
96871286 TTAATAACAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 17 0.26
58 47 0.72
59 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (57 bp):
ATAATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATTTA
Found at i:96871663 original size:27 final size:27
Alignment explanation
Indices: 96871633--96871709 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
96871623 GACTAATTGA
* * *
96871633 GCCTTTCTCTGAGGCGCAAATGGTTGT
1 GCCTATCTCAGAGGCACAAATGGTTGT
96871660 GCCTATCTCAGAGGCACAAATGGTTGT
1 GCCTATCTCAGAGGCACAAATGGTTGT
*
96871687 GCCTATCCCAGAGGCACAAATGG
1 GCCTATCTCAGAGGCACAAATGG
96871710 GGCCCACACG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (27 bp):
GCCTATCTCAGAGGCACAAATGGTTGT
Found at i:96877928 original size:2 final size:2
Alignment explanation
Indices: 96877921--96877966 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
96877911 TTTAACATCA
96877921 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96877963 AT AT
1 AT AT
96877967 TCATAACTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96878394 original size:60 final size:61
Alignment explanation
Indices: 96878319--96878441 Score: 203
Period size: 60 Copynumber: 2.0 Consensus size: 61
96878309 CAACAATTTA
* * * *
96878319 TAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA-CAAATACAAAAAAATT
1 TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAAAAAACAAAAAAATT
96878379 TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAAAAAACAAAAAAATT
1 TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAAAAAACAAAAAAATT
96878440 TA
1 TA
96878442 CATTCATACA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
60 42 0.72
61 16 0.28
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (61 bp):
TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATAAAAAACAAAAAAATT
Found at i:96878644 original size:13 final size:13
Alignment explanation
Indices: 96878595--96878649 Score: 69
Period size: 13 Copynumber: 4.2 Consensus size: 13
96878585 TTTTTATTTT
96878595 TTTTCTTTCT-TC
1 TTTTCTTTCTCTC
96878607 TTCTTC-TTCTCTTC
1 TT-TTCTTTCTC-TC
96878621 TTTTCCTTTCTCTC
1 TTTT-CTTTCTCTC
96878635 TTTTCTTTCTCTC
1 TTTTCTTTCTCTC
96878648 TT
1 TT
96878650 CTGGTGTGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.16
13 16 0.42
14 11 0.29
15 5 0.13
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCTTTCTCTC
Found at i:96878649 original size:27 final size:27
Alignment explanation
Indices: 96878594--96878646 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
96878584 CTTTTTATTT
*
96878594 TTTTTCTTTCTTCTTCTTCTTCTCTTC
1 TTTTCCTTTCTTCTTCTTCTTCTCTTC
96878621 TTTTCCTTTCTCTCTT-TTCTTTCTCT
1 TTTTCCTTTCT-TCTTCTTC-TTCTCT
96878647 CTTCTGGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTCCTTTCTTCTTCTTCTTCTCTTC
Found at i:96879240 original size:16 final size:16
Alignment explanation
Indices: 96879212--96879282 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
96879202 TGAATTACTG
* *
96879212 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCA
*
96879228 ATTATAGCCCTATTCA
1 ATTACAGCCCTATTCA
*
96879244 ATTACAACCCTATTCA
1 ATTACAGCCCTATTCA
* *
96879260 ATTACAGCCTTATTCT
1 ATTACAGCCCTATTCA
96879276 ATTACAG
1 ATTACAG
96879283 TGAACCAAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:96885126 original size:16 final size:15
Alignment explanation
Indices: 96885092--96885123 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96885082 CTCCCAAGTG
96885092 AACCAATTTCCAGAA
1 AACCAATTTCCAGAA
*
96885107 AACCAATTTCTAGAA
1 AACCAATTTCCAGAA
96885122 AA
1 AA
96885124 ACCCACGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (15 bp):
AACCAATTTCCAGAA
Found at i:96887873 original size:40 final size:40
Alignment explanation
Indices: 96887796--96888012 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
96887786 AAACCAAGTA
* * *
96887796 CCTTCGGGATTTA-TCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
96887835 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
96887875 CCTTCGGGACCTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
96887915 CCTTCGGGACTTATCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
96887955 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
96887995 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
96888013 ATTATCATCC
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 145 0.92
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:96892420 original size:6 final size:6
Alignment explanation
Indices: 96892409--96892452 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
96892399 GCCTAATTTC
96892409 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG
1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG
96892453 AAGGCCAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
AGGGAG
Found at i:96893262 original size:13 final size:13
Alignment explanation
Indices: 96893244--96893269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96893234 TAGAGAAAGA
96893244 GAGGAAGAGGGAC
1 GAGGAAGAGGGAC
96893257 GAGGAAGAGGGAC
1 GAGGAAGAGGGAC
96893270 AGACAGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.54, T:0.00
Consensus pattern (13 bp):
GAGGAAGAGGGAC
Found at i:96897986 original size:32 final size:32
Alignment explanation
Indices: 96897928--96898003 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
96897918 TTGTTGGATT
*
96897928 TTGAAATTATTATGTCTTGAATTTGTTACATA
1 TTGAAATTATTATGTCTTGAACTTGTTACATA
* * **
96897960 TTGAATTTATTATGT-TTTAAGCTTGTTGGATA
1 TTGAAATTATTATGTCTTGAA-CTTGTTACATA
*
96897992 TTGAAATGATTA
1 TTGAAATTATTA
96898004 ACAATGACAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (32 bp):
TTGAAATTATTATGTCTTGAACTTGTTACATA
Found at i:96900442 original size:68 final size:69
Alignment explanation
Indices: 96900367--96900518 Score: 170
Period size: 67 Copynumber: 2.2 Consensus size: 69
96900357 CATCATGTGT
** * * *
96900367 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGT-GATAC-TATG-TGTACACC
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCATGGATACAGATGAAGGACACC
96900429 ATGTAG
64 ATGTAG
* * * *
96900435 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTTGCATGCATGGTTCCAGATGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGGATACAGATGAAGGACACCAT
96900498 GTAG
66 GTAG
96900502 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
96900519 TAAACTGGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
64 18 0.26
65 6 0.09
66 4 0.06
67 27 0.39
68 15 0.21
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGGATACAGATGAAGGACACCAT
GTAG
Found at i:96907254 original size:45 final size:44
Alignment explanation
Indices: 96907191--96907282 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 44
96907181 CCGAATTTAA
* * *
96907191 TTTAATTTTTTATTTTTTATTTTGAGGCAAATAATA-TTACATTT
1 TTTAATTTTTTATTTTTTATTTTGAAGAAAATAAGATTTAC-TTT
96907235 TTTAATTGTTTTATTTTTTATTTTGAAGAAAATAAGATTTACTTT
1 TTTAATT-TTTTATTTTTTATTTTGAAGAAAATAAGATTTACTTT
96907280 TTT
1 TTT
96907283 GAGTTTAGAC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 7 0.16
45 32 0.74
46 4 0.09
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.60
Consensus pattern (44 bp):
TTTAATTTTTTATTTTTTATTTTGAAGAAAATAAGATTTACTTT
Found at i:96908729 original size:16 final size:16
Alignment explanation
Indices: 96908708--96908759 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
96908698 TTTGGTTCAG
*
96908708 TGTAATGGAATAGAGC
1 TGTAATAGAATAGAGC
* *
96908724 TGTAATAGAATAAAGT
1 TGTAATAGAATAGAGC
* *
96908740 TATAATAGAATAGAAC
1 TGTAATAGAATAGAGC
96908756 TGTA
1 TGTA
96908760 GTAGCAATTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (16 bp):
TGTAATAGAATAGAGC
Found at i:96908986 original size:21 final size:20
Alignment explanation
Indices: 96908952--96908994 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
96908942 AAATATAATT
96908952 TAATAAAAATAATTTAACAA
1 TAATAAAAATAATTTAACAA
* *
96908972 TAATAATATATAATTTAATAA
1 TAATAA-AAATAATTTAACAA
96908993 TA
1 TA
96908995 TTCTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TAATAAAAATAATTTAACAA
Found at i:96909174 original size:12 final size:12
Alignment explanation
Indices: 96909157--96909191 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
96909147 TATATGTTAC
96909157 TTAAAAAATAAT
1 TTAAAAAATAAT
96909169 TTAAAAGAATAAT
1 TTAAAA-AATAAT
*
96909182 TTAAAGAATA
1 TTAAAAAATA
96909192 TCTTGTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (12 bp):
TTAAAAAATAAT
Found at i:96909181 original size:13 final size:13
Alignment explanation
Indices: 96909157--96909191 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
96909147 TATATGTTAC
96909157 TTAAAA-AATAAT
1 TTAAAAGAATAAT
96909169 TTAAAAGAATAAT
1 TTAAAAGAATAAT
96909182 TT-AAAGAATA
1 TTAAAAGAATA
96909192 TCTTGTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 14 0.64
13 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (13 bp):
TTAAAAGAATAAT
Found at i:96909272 original size:2 final size:2
Alignment explanation
Indices: 96909265--96909289 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96909255 TGTTATGTTG
96909265 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
96909290 TTAACATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96915950 original size:15 final size:15
Alignment explanation
Indices: 96915930--96915964 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
96915920 GGTTGGTGAA
96915930 AAAAAAAAGA-AGAAG
1 AAAAAAAAGAGAG-AG
96915945 AAAAAAAAGAGAGAG
1 AAAAAAAAGAGAGAG
96915960 AAAAA
1 AAAAA
96915965 TAACACAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAGAGAG
Found at i:96916635 original size:3 final size:3
Alignment explanation
Indices: 96916627--96916657 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
96916617 TCTTTAAAGC
96916627 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
96916658 GATATTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:96916739 original size:9 final size:9
Alignment explanation
Indices: 96916716--96916765 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
96916706 CAAAATTATT
*
96916716 ATTTTATAA
1 ATTTTTTAA
*
96916725 AATTTTTAA
1 ATTTTTTAA
96916734 A-TTTTTAA
1 ATTTTTTAA
*
96916742 ATTTTTTAT
1 ATTTTTTAA
*
96916751 A-TTTTTAG
1 ATTTTTTAA
96916759 ATTTTTT
1 ATTTTTT
96916766 TAAAAAAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
8 15 0.43
9 20 0.57
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:96916746 original size:7 final size:8
Alignment explanation
Indices: 96916724--96916764 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
96916714 TTATTTTATA
96916724 AAATTTTT
1 AAATTTTT
96916732 AAATTTTT
1 AAATTTTT
96916740 AAATTTTTT
1 AAA-TTTTT
*
96916749 ATATTTTT
1 AAATTTTT
*
96916757 AGATTTTT
1 AAATTTTT
96916765 TTAAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (8 bp):
AAATTTTT
Found at i:96916747 original size:17 final size:17
Alignment explanation
Indices: 96916716--96916765 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
96916706 CAAAATTATT
*
96916716 ATTTTATAAAATTTTTAA
1 ATTTT-TAAATTTTTTAA
*
96916734 ATTTTTAAATTTTTTAT
1 ATTTTTAAATTTTTTAA
*
96916751 ATTTTTAGATTTTTT
1 ATTTTTAAATTTTTT
96916766 TAAAAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 24 0.83
18 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTTTTAAATTTTTTAA
Found at i:96916800 original size:19 final size:20
Alignment explanation
Indices: 96916759--96916801 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
96916749 ATATTTTTAG
*
96916759 ATTTTTTTAAAAAAATCATA
1 ATTTTTTTAAAAAAATCAAA
*
96916779 ATTTTTTTAAAAATA-CAAA
1 ATTTTTTTAAAAAAATCAAA
96916798 ATTT
1 ATTT
96916802 AGAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTTTTTAAAAAAATCAAA
Found at i:96916865 original size:19 final size:19
Alignment explanation
Indices: 96916804--96916867 Score: 85
Period size: 20 Copynumber: 3.4 Consensus size: 19
96916794 CAAAATTTAG
*
96916804 AATTTTTATAAA-TATTTT
1 AATTTTTAAAAATTATTTT
*
96916822 AAATTTTAAAAATTATTTT
1 AATTTTTAAAAATTATTTT
96916841 AAATTTTTAAAAATTATTTT
1 -AATTTTTAAAAATTATTTT
*
96916861 GATTTTT
1 AATTTTT
96916868 TTTTAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 10 0.25
19 12 0.30
20 18 0.45
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTTTTAAAAATTATTTT
Found at i:96916868 original size:20 final size:20
Alignment explanation
Indices: 96916799--96916860 Score: 92
Period size: 20 Copynumber: 3.1 Consensus size: 20
96916789 AAATACAAAA
*
96916799 TTTAGAATTTTTATAAA-TAT
1 TTTA-AATTTTTAAAAATTAT
96916819 TTTAAA-TTTTAAAAATTAT
1 TTTAAATTTTTAAAAATTAT
96916838 TTTAAATTTTTAAAAATTAT
1 TTTAAATTTTTAAAAATTAT
96916858 TTT
1 TTT
96916861 GATTTTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
18 8 0.21
19 11 0.28
20 20 0.51
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTAAATTTTTAAAAATTAT
Found at i:96917031 original size:9 final size:9
Alignment explanation
Indices: 96917008--96917046 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
96916998 AAAATTTCTT
*
96917008 ATTCGAGTA
1 ATTCGAATA
*
96917017 ACTCGAATA
1 ATTCGAATA
96917026 ATTCGAATA
1 ATTCGAATA
*
96917035 ACTCGAATA
1 ATTCGAATA
96917044 ATT
1 ATT
96917047 TAATTCAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (9 bp):
ATTCGAATA
Found at i:96917031 original size:18 final size:18
Alignment explanation
Indices: 96917008--96917046 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
96916998 AAAATTTCTT
*
96917008 ATTCGAGTAACTCGAATA
1 ATTCGAATAACTCGAATA
96917026 ATTCGAATAACTCGAATA
1 ATTCGAATAACTCGAATA
96917044 ATT
1 ATT
96917047 TAATTCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (18 bp):
ATTCGAATAACTCGAATA
Found at i:96917050 original size:23 final size:21
Alignment explanation
Indices: 96917024--96917072 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 21
96917014 GTAACTCGAA
96917024 TAATTCGAA-TAACTCGAATAATT
1 TAATTC-AATTAACTCG-A-AATT
96917047 TAATTCAATTAACTCGAAATT
1 TAATTCAATTAACTCGAAATT
96917068 TAATT
1 TAATT
96917073 TTTTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.36
22 3 0.12
23 13 0.52
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (21 bp):
TAATTCAATTAACTCGAAATT
Found at i:96925966 original size:19 final size:20
Alignment explanation
Indices: 96925944--96925987 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
96925934 AATATTAAGA
96925944 ATAAAGTA-AAATGAATTA-T
1 ATAAAGTATAAAT-AATTATT
*
96925963 ATAAATTATAAATAATTATT
1 ATAAAGTATAAATAATTATT
96925983 ATAAA
1 ATAAA
96925988 AATTAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAAAGTATAAATAATTATT
Found at i:96926003 original size:24 final size:24
Alignment explanation
Indices: 96925958--96926021 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 24
96925948 AGTAAAATGA
* *
96925958 ATTATATAAATT--ATAAATAATT
1 ATTATAAAAATTAAATAAAAAATT
96925980 ATTATAAAAATTAAATAAAAAATT
1 ATTATAAAAATTAAATAAAAAATT
* *
96926004 -TATATTAATATTAAATAA
1 AT-TATAAAAATTAAATAA
96926022 TTATATGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.31
23 1 0.03
24 23 0.66
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATTATAAAAATTAAATAAAAAATT
Found at i:96926007 original size:44 final size:43
Alignment explanation
Indices: 96925959--96926042 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 43
96925949 GTAAAATGAA
*
96925959 TTATATAAAT-TATAAATAATTATTATAAAAATTAAATAAAAAAT
1 TTATATAAATAT-TAAATAATTA-TATAAAAATAAAATAAAAAAT
* *
96926003 TTATATTAATATTAAATAATTATATGAAAATAAAATAAAA
1 TTATATAAATATTAAATAATTATATAAAAATAAAATAAAA
96926043 TAAAATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 16 0.44
44 19 0.53
45 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (43 bp):
TTATATAAATATTAAATAATTATATAAAAATAAAATAAAAAAT
Found at i:96926038 original size:19 final size:20
Alignment explanation
Indices: 96925992--96926040 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
96925982 TATAAAAATT
*
96925992 AAATAAAA-AATTTATATTA
1 AAATAAAATAATTTATATGA
* *
96926011 ATATTAAATAA-TTATATGA
1 AAATAAAATAATTTATATGA
96926030 AAATAAAATAA
1 AAATAAAATAA
96926041 AATAAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 22 0.92
20 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
AAATAAAATAATTTATATGA
Found at i:96926039 original size:5 final size:5
Alignment explanation
Indices: 96926029--96926053 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
96926019 TAATTATATG
96926029 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
96926054 CCTCTCCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:96927860 original size:35 final size:35
Alignment explanation
Indices: 96927813--96927902 Score: 126
Period size: 35 Copynumber: 2.6 Consensus size: 35
96927803 ACAAGAGTCG
*
96927813 ATCCATCCGAAACACACCAATGCTCATAAGAGCTA
1 ATCCAACCGAAACACACCAATGCTCATAAGAGCTA
** * *
96927848 ATCCCTCTGAAACATACCAATGCTCATAAGAGCTA
1 ATCCAACCGAAACACACCAATGCTCATAAGAGCTA
*
96927883 GTCCAACCGAAACACACCAA
1 ATCCAACCGAAACACACCAA
96927903 AATAGAAAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.40, C:0.32, G:0.11, T:0.17
Consensus pattern (35 bp):
ATCCAACCGAAACACACCAATGCTCATAAGAGCTA
Found at i:96937201 original size:21 final size:19
Alignment explanation
Indices: 96937157--96937203 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
96937147 GAAGGGGAAA
96937157 GGGGAGAGGGAGAGAGGTG
1 GGGGAGAGGGAGAGAGGTG
*
96937176 AGGGAGA-GGAGAAGAGCGTG
1 GGGGAGAGGGAG-AGAG-GTG
96937196 TGGGGAGA
1 -GGGGAGA
96937204 CGGTGTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 3 0.13
21 6 0.26
ACGTcount: A:0.30, C:0.02, G:0.62, T:0.06
Consensus pattern (19 bp):
GGGGAGAGGGAGAGAGGTG
Found at i:96937291 original size:25 final size:26
Alignment explanation
Indices: 96937248--96937299 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
96937238 GGAAGTCAGG
96937248 ATTTTATTTTAGTTTATATTAATATA
1 ATTTTATTTTAGTTTATATTAATATA
96937274 ATTTT-TTTT-GTTTAATATTAATATA
1 ATTTTATTTTAGTTT-ATATTAATATA
96937299 A
1 A
96937300 AACTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.16
25 16 0.64
26 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (26 bp):
ATTTTATTTTAGTTTATATTAATATA
Found at i:96937306 original size:25 final size:24
Alignment explanation
Indices: 96937254--96937311 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
96937244 CAGGATTTTA
***
96937254 TTTTAGTTTATATTAATATAATTT
1 TTTTAGTTTATATTAATATAAAAC
*
96937278 TTTTTGTTTAATATTAATATAAAAC
1 TTTTAGTTT-ATATTAATATAAAAC
96937303 TTTTA-TTTA
1 TTTTAGTTTA
96937312 ATTTTTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.04
24 11 0.39
25 16 0.57
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (24 bp):
TTTTAGTTTATATTAATATAAAAC
Found at i:96937931 original size:2 final size:2
Alignment explanation
Indices: 96937924--96937949 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
96937914 AGTACCATTC
96937924 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
96937950 GATAGAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96940129 original size:140 final size:139
Alignment explanation
Indices: 96939878--96940158 Score: 553
Period size: 140 Copynumber: 2.0 Consensus size: 139
96939868 TGTTATAAGT
96939878 AAAGTTATGCTATACATAAGTCGTATATCTAACATATCAACTTTGGCTCTATTATCTATTGTCAT
1 AAAGTTATGCTATACATAAGTCGTATATCTAACATATCAACTTTGGCTCTATTATCTATTGTCAT
96939943 TCTAGACAACTACACCTATATTTATACCTTTCTAAGAGTCATCCGCTCCAATATACAAGATAATG
66 TCTAGACAACTACACCTATATTTATACCTTTCTAAGAGTCATCCGCTCCAATATACAAGATAATG
96940008 TATCTTTTC
131 TATCTTTTC
96940017 AAAGTTATGCTATACATAAGTCGTATATCTAACATATCAACTTTTGGCTCTATTATCTATTGTCA
1 AAAGTTATGCTATACATAAGTCGTATATCTAACATATCAAC-TTTGGCTCTATTATCTATTGTCA
96940082 TTCTAGACAACTACACCTATATTTATACCTTTCTAAGAGTCATCCGCTCCAATATACAAGATAAT
65 TTCTAGACAACTACACCTATATTTATACCTTTCTAAGAGTCATCCGCTCCAATATACAAGATAAT
96940147 GTATCTTTTC
130 GTATCTTTTC
96940157 AA
1 AA
96940159 TTGGACTTAA
Statistics
Matches: 141, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
139 41 0.29
140 100 0.71
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (139 bp):
AAAGTTATGCTATACATAAGTCGTATATCTAACATATCAACTTTGGCTCTATTATCTATTGTCAT
TCTAGACAACTACACCTATATTTATACCTTTCTAAGAGTCATCCGCTCCAATATACAAGATAATG
TATCTTTTC
Found at i:96943278 original size:5 final size:5
Alignment explanation
Indices: 96943268--96943299 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
96943258 TTGTGTGTTC
96943268 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
96943300 TCATAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:96943282 original size:9 final size:9
Alignment explanation
Indices: 96943268--96943298 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
96943258 TTGTGTGTTC
96943268 TTTATTTTA
1 TTTATTTTA
96943277 TTTATTTTA
1 TTTATTTTA
96943286 TTTTATTTTA
1 -TTTATTTTA
96943296 TTT
1 TTT
96943299 TTCATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:96947731 original size:5 final size:5
Alignment explanation
Indices: 96947721--96947752 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
96947711 TTGTGTGTTC
96947721 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
96947753 TCACAGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:96947735 original size:9 final size:9
Alignment explanation
Indices: 96947721--96947751 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
96947711 TTGTGTGTTC
96947721 TTTATTTTA
1 TTTATTTTA
96947730 TTTATTTTA
1 TTTATTTTA
96947739 TTTTATTTTA
1 -TTTATTTTA
96947749 TTT
1 TTT
96947752 TTCACAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:96948813 original size:22 final size:22
Alignment explanation
Indices: 96948788--96948831 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
96948778 CATATTCATT
96948788 TTCGAATGTTCTTATTTTTCTA
1 TTCGAATGTTCTTATTTTTCTA
96948810 TTCGAATGTTCTTATTTTTCTA
1 TTCGAATGTTCTTATTTTTCTA
96948832 ACTTTATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.09, T:0.59
Consensus pattern (22 bp):
TTCGAATGTTCTTATTTTTCTA
Found at i:96961649 original size:39 final size:39
Alignment explanation
Indices: 96961606--96961733 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
96961596 GGTCTTTAAC
** *
96961606 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
96961645 CCGGATATATTTCTAGCATATAGCCTGCAGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
96961684 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
96961723 CCGGATATTTT
1 CCGGATATTTT
96961734 CAATCTCATA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:96963344 original size:16 final size:16
Alignment explanation
Indices: 96963323--96963355 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
96963313 TTTACTCATG
96963323 AAAGCATAAAACAACC
1 AAAGCATAAAACAACC
96963339 AAAGCATAAAACAACC
1 AAAGCATAAAACAACC
96963355 A
1 A
96963356 CCATTTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.24, G:0.06, T:0.06
Consensus pattern (16 bp):
AAAGCATAAAACAACC
Found at i:96964290 original size:29 final size:29
Alignment explanation
Indices: 96964248--96964308 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
96964238 TCTTTATTTT
*
96964248 GTACCGAGGTAAGTTCAAGTGTAAATGTA
1 GTACCGAGGCAAGTTCAAGTGTAAATGTA
*
96964277 GTACCGAGGCAAGTTCAGGTGTAAATGTA
1 GTACCGAGGCAAGTTCAAGTGTAAATGTA
96964306 GTA
1 GTA
96964309 ACATAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (29 bp):
GTACCGAGGCAAGTTCAAGTGTAAATGTA
Found at i:96967907 original size:26 final size:22
Alignment explanation
Indices: 96967872--96967930 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 22
96967862 ATAGTGGTGT
*
96967872 TTAAAAATAATATGTAAAAATTAA
1 TTAATAATAATAT-T-AAAATTAA
*
96967896 TTAATCATATAAT-TTGAAATTAA
1 TTAAT-A-ATAATATTAAAATTAA
96967919 TTAATAATAATA
1 TTAATAATAATA
96967931 ACAAATTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
21 5 0.17
22 1 0.03
23 12 0.40
24 5 0.17
25 2 0.07
26 5 0.17
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (22 bp):
TTAATAATAATATTAAAATTAA
Found at i:96972021 original size:22 final size:22
Alignment explanation
Indices: 96971996--96972039 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
96971986 TAGTCTTATA
96971996 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
96972018 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
96972040 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:96972075 original size:13 final size:14
Alignment explanation
Indices: 96972059--96972100 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
96972049 TTTCAATTTT
96972059 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
96972072 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
96972087 ATTTTAAATAATAT
1 ATTTT-AATAATAT
96972101 TATTCATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:96972085 original size:16 final size:16
Alignment explanation
Indices: 96972063--96972099 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
96972053 AATTTTATTT
96972063 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
96972080 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
96972095 TAATA
1 TAATA
96972100 TTATTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:96976013 original size:7 final size:7
Alignment explanation
Indices: 96976001--96976029 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
96975991 AGAGATGGGG
96976001 AGAATAA
1 AGAATAA
96976008 AGAATAA
1 AGAATAA
96976015 AGAATAA
1 AGAATAA
96976022 AGAATAA
1 AGAATAA
96976029 A
1 A
96976030 AAAATATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AGAATAA
Found at i:96976231 original size:15 final size:15
Alignment explanation
Indices: 96976182--96976233 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
96976172 ATTCAATATT
*
96976182 AATATTTTAATAATA
1 AATATATTAATAATA
*
96976197 AATAATTATTACAATTATA
1 AAT-A-TATT--AATAATA
96976216 AATATATTAATAATA
1 AATATATTAATAATA
96976231 AAT
1 AAT
96976234 GTTTTGTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:96980789 original size:55 final size:55
Alignment explanation
Indices: 96980702--96980813 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
96980692 TTGGCGTCAA
* *
96980702 CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
1 CTTCAAGGATAAGAACAAGTAGTTTGTATTTGAATTTCAAATTTCAAATACAAGG
96980757 CTTCAAGGATAAGAACAAGTAGTTTGTATTTGAATTTCAAATTTCAAATACAAGG
1 CTTCAAGGATAAGAACAAGTAGTTTGTATTTGAATTTCAAATTTCAAATACAAGG
96980812 CT
1 CT
96980814 GCCATATAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.34
Consensus pattern (55 bp):
CTTCAAGGATAAGAACAAGTAGTTTGTATTTGAATTTCAAATTTCAAATACAAGG
Found at i:96982683 original size:22 final size:22
Alignment explanation
Indices: 96982655--96982708 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
96982645 GAAGTTGCAG
96982655 GCGTTGAA-ACAGGGGAGTAGGA
1 GCGTTGAAGA-AGGGGAGTAGGA
96982677 GCGTTGAAGAAGGGGAGTAGGA
1 GCGTTGAAGAAGGGGAGTAGGA
*
96982699 GTGTTGAAGA
1 GCGTTGAAGA
96982709 CTACTACAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.46, T:0.17
Consensus pattern (22 bp):
GCGTTGAAGAAGGGGAGTAGGA
Found at i:96986739 original size:121 final size:121
Alignment explanation
Indices: 96986525--96986781 Score: 505
Period size: 121 Copynumber: 2.1 Consensus size: 121
96986515 GTGTATATGC
*
96986525 AGCTCATCTTCAGCTCAAGTTAGCTCAGAGTACTCTACACCAGCTCATGTCAGCTCACTCCACTT
1 AGCTCAACTTCAGCTCAAGTTAGCTCAGAGTACTCTACACCAGCTCATGTCAGCTCACTCCACTT
96986590 GTAGCTAGCTCGTTCTAGCTCAGTTCAGTTTCCGTCAACTCAATTTCAGCTCCACT
66 GTAGCTAGCTCGTTCTAGCTCAGTTCAGTTTCCGTCAACTCAATTTCAGCTCCACT
96986646 AGCTCAACTTCAGCTCAAGTTAGCTCAGAGTACTCTACACCAGCTCATGTCAGCTCACTCCACTT
1 AGCTCAACTTCAGCTCAAGTTAGCTCAGAGTACTCTACACCAGCTCATGTCAGCTCACTCCACTT
96986711 GTAGCTAGCTCGTTCTAGCTCAGTTCAGTTTCCGTCAACTCAATTTCAGCTCCACT
66 GTAGCTAGCTCGTTCTAGCTCAGTTCAGTTTCCGTCAACTCAATTTCAGCTCCACT
96986767 AGCTCAACTTCAGCT
1 AGCTCAACTTCAGCT
96986782 AGCAAGTCCA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 135 1.00
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (121 bp):
AGCTCAACTTCAGCTCAAGTTAGCTCAGAGTACTCTACACCAGCTCATGTCAGCTCACTCCACTT
GTAGCTAGCTCGTTCTAGCTCAGTTCAGTTTCCGTCAACTCAATTTCAGCTCCACT
Found at i:96987045 original size:10 final size:10
Alignment explanation
Indices: 96987030--96987056 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
96987020 GTCGCCTATT
96987030 TTAGGAGTTA
1 TTAGGAGTTA
96987040 TTAGGAGTTA
1 TTAGGAGTTA
96987050 TTAGGAG
1 TTAGGAG
96987057 ATTAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (10 bp):
TTAGGAGTTA
Found at i:96989796 original size:27 final size:27
Alignment explanation
Indices: 96989752--96989813 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
96989742 TTTTATCCTA
96989752 GTAAAA-TTTTGACAATTTTAACCTCG
1 GTAAAATTTTTGACAATTTTAACCTCG
** * *
96989778 GTAAAATTTTTGATGATTTTACCCTTG
1 GTAAAATTTTTGACAATTTTAACCTCG
96989805 GTAAAATTT
1 GTAAAATTT
96989814 CGAGAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (27 bp):
GTAAAATTTTTGACAATTTTAACCTCG
Found at i:96993587 original size:22 final size:24
Alignment explanation
Indices: 96993557--96993600 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
96993547 CTTCACTCAC
*
96993557 TTTGGTACTT-AA-ATTTTTTTAA
1 TTTGATACTTAAAGATTTTTTTAA
96993579 TTTGATACTTAAAGATTTTTTT
1 TTTGATACTTAAAGATTTTTTT
96993601 TGTCACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 2 0.11
24 8 0.42
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.59
Consensus pattern (24 bp):
TTTGATACTTAAAGATTTTTTTAA
Found at i:96996592 original size:14 final size:14
Alignment explanation
Indices: 96996573--96996600 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96996563 ACAATGTTTG
96996573 TTTGGAATAATCGA
1 TTTGGAATAATCGA
96996587 TTTGGAATAATCGA
1 TTTGGAATAATCGA
96996601 AAGTTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
TTTGGAATAATCGA
Found at i:97004346 original size:37 final size:37
Alignment explanation
Indices: 97004300--97004374 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
97004290 GGATTTAAGG
97004300 AGACAACAGAACCTTCAGTTTGTTTAAGTGCAGGTAC
1 AGACAACAGAACCTTCAGTTTGTTTAAGTGCAGGTAC
*
97004337 AGACCACAGAACCTTCAGTTTGTTTAAGTGCAGGTAC
1 AGACAACAGAACCTTCAGTTTGTTTAAGTGCAGGTAC
97004374 A
1 A
97004375 CGGGAGCGGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (37 bp):
AGACAACAGAACCTTCAGTTTGTTTAAGTGCAGGTAC
Found at i:97006897 original size:16 final size:16
Alignment explanation
Indices: 97006876--97006934 Score: 57
Period size: 16 Copynumber: 3.4 Consensus size: 16
97006866 ATTATTTCTA
97006876 TTTATTTAATAGTATT
1 TTTATTTAATAGTATT
*
97006892 TTTATTTTCAT-GTATTTCT
1 TTTA-TTTAATAGTA--T-T
97006911 ATTTATTTAATAGTATT
1 -TTTATTTAATAGTATT
97006928 TTTATTT
1 TTTATTT
97006935 TCATGTAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
16 14 0.40
17 6 0.17
18 2 0.06
19 6 0.17
20 7 0.20
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTATTTAATAGTATT
Found at i:97006897 original size:20 final size:20
Alignment explanation
Indices: 97006868--97006934 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
97006858 GCATGTTAAT
97006868 TATTTCTATTTATTTAATAG
1 TATTTCTATTTATTTAATAG
* *
97006888 TATTT-T-TAT-TTTCAT-G
1 TATTTCTATTTATTTAATAG
97006904 TATTTCTATTTATTTAATAG
1 TATTTCTATTTATTTAATAG
*
97006924 TATTTTTATTT
1 TATTTCTATTT
97006935 TCATGTAATC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 6 0.16
17 6 0.16
18 4 0.11
19 6 0.16
20 16 0.42
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.66
Consensus pattern (20 bp):
TATTTCTATTTATTTAATAG
Found at i:97006908 original size:36 final size:36
Alignment explanation
Indices: 97006868--97006941 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
97006858 GCATGTTAAT
97006868 TATTTCTATTTATTTAATAGTATTTTTATTTTCATG
1 TATTTCTATTTATTTAATAGTATTTTTATTTTCATG
97006904 TATTTCTATTTATTTAATAGTATTTTTATTTTCATG
1 TATTTCTATTTATTTAATAGTATTTTTATTTTCATG
97006940 TA
1 TA
97006942 ATCTCTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (36 bp):
TATTTCTATTTATTTAATAGTATTTTTATTTTCATG
Found at i:97009970 original size:40 final size:40
Alignment explanation
Indices: 97009863--97010053 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
97009853 CGGATGATAA
* * * *
97009863 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
97009903 CCGGGCTAAGT-CCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* *
97009942 CTGGGCTAAGTCCCAAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
97009982 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
97010022 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
97010054 AGCTATAACC
Statistics
Matches: 133, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 31 0.23
40 102 0.77
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:97015456 original size:16 final size:15
Alignment explanation
Indices: 97015436--97015487 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
97015426 GGGAGGAATG
97015436 GAATAGAGTTGTAAT
1 GAATAGAGTTGTAAT
97015451 GTAATAGAGTTGTAAT
1 G-AATAGAGTTGTAAT
**
97015467 AGAATAGACCTGTAAT
1 -GAATAGAGTTGTAAT
97015483 GAATA
1 GAATA
97015488 ATTCAGTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 6 0.18
16 26 0.79
17 1 0.03
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.31
Consensus pattern (15 bp):
GAATAGAGTTGTAAT
Found at i:97015688 original size:20 final size:21
Alignment explanation
Indices: 97015663--97015768 Score: 58
Period size: 20 Copynumber: 4.8 Consensus size: 21
97015653 AAATTATTAT
97015663 TAAATATAATTTAATAAA-AA
1 TAAATATAATTTAATAAATAA
*
97015683 TAAATAATAA-ATAATAAATAA
1 TAAAT-ATAATTTAATAAATAA
* * *
97015704 TTTAATCATATTTTAACATAAGTATTAT
1 -TAAAT-ATAATTT-A-ATAA--A-TAA
*
97015732 TAAATACAATTTAAT-AA-AA
1 TAAATATAATTTAATAAATAA
97015751 TAATATATAATTTAATAA
1 TAA-ATATAATTTAATAA
97015769 CATTCTTAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
19 4 0.06
20 23 0.36
21 8 0.12
22 7 0.11
23 2 0.03
24 3 0.05
25 5 0.08
26 5 0.08
27 5 0.08
28 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.39
Consensus pattern (21 bp):
TAAATATAATTTAATAAATAA
Found at i:97015693 original size:7 final size:7
Alignment explanation
Indices: 97015674--97015704 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
97015664 AAATATAATT
97015674 TAATAAA
1 TAATAAA
97015681 -AATAAA
1 TAATAAA
97015687 TAATAAA
1 TAATAAA
97015694 TAATAAA
1 TAATAAA
97015701 TAAT
1 TAAT
97015705 TTAATCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAATAAA
Found at i:97015994 original size:83 final size:83
Alignment explanation
Indices: 97015855--97016023 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 83
97015845 CTTTATTATT
97015855 TTTAAACACATATTTAATGTGCTAAATGTTCCATTATCCATTTATTTTTTCCTTGCACTCTTTTT
1 TTTAAACACATATTTAATGTGCTAAATGTTCCATTATCCATTTATTTTTTCCTTGCACTCTTTTT
97015920 CTTCCTTTACTAAATTTC
66 CTTCCTTTACTAAATTTC
*
97015938 TTTAAACACATATTTAATGTGCTAAATGTTCTATTATCCATTTATTTTTTCCTTGCACTCTTTTT
1 TTTAAACACATATTTAATGTGCTAAATGTTCCATTATCCATTTATTTTTTCCTTGCACTCTTTTT
97016003 CTTCCTTTACTAAATTTC
66 CTTCCTTTACTAAATTTC
97016021 TTT
1 TTT
97016024 TATCTTTTAT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.24, C:0.20, G:0.05, T:0.52
Consensus pattern (83 bp):
TTTAAACACATATTTAATGTGCTAAATGTTCCATTATCCATTTATTTTTTCCTTGCACTCTTTTT
CTTCCTTTACTAAATTTC
Found at i:97017731 original size:15 final size:15
Alignment explanation
Indices: 97017711--97017739 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97017701 TTTAAGACAA
97017711 CATAAATACTTACAG
1 CATAAATACTTACAG
97017726 CATAAATACTTACA
1 CATAAATACTTACA
97017740 TTTTAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
CATAAATACTTACAG
Found at i:97023152 original size:18 final size:18
Alignment explanation
Indices: 97023125--97023159 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97023115 CTCAAAATTC
*
97023125 TCCTTTTTTTACTTTATT
1 TCCTTATTTTACTTTATT
*
97023143 TCCTTATTTTATTTTAT
1 TCCTTATTTTACTTTAT
97023160 CAAGGACAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (18 bp):
TCCTTATTTTACTTTATT
Found at i:97027405 original size:18 final size:18
Alignment explanation
Indices: 97027378--97027421 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
97027368 AATATTCCTA
97027378 AAAAACTAAATATTAA-TTT
1 AAAAA-TAAA-ATTAACTTT
*
97027397 AACAATAAAATTAACTTT
1 AAAAATAAAATTAACTTT
97027415 AAAAATA
1 AAAAATA
97027422 TGGGTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 13 0.59
19 4 0.18
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATAAAATTAACTTT
Found at i:97027997 original size:68 final size:71
Alignment explanation
Indices: 97027860--97027997 Score: 194
Period size: 72 Copynumber: 2.0 Consensus size: 71
97027850 TAATTAAACT
* *
97027860 TAATCATTTTAATATTAAATTAATAAAATATATCTCTACAAGATAAAGATTAAATTAAATTCAAT
1 TAATCACTTTAATATTAAATTAATAAAATATATATCTA-AAGATAAAGATTAAATTAAATTCAAT
97027925 ATTAAGA
65 ATTAAGA
* *
97027932 TAATCACTTTAATATTAAATTAATAAAATCT-TAT-T-AAGAT-AAGTATTAAATTAAATTTAAT
1 TAATCACTTTAATATTAAATTAATAAAATATATATCTAAAGATAAAG-ATTAAATTAAATTCAAT
97027993 ATTAA
65 ATTAA
97027998 ATCTATTAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
67 3 0.05
68 26 0.43
70 1 0.02
71 2 0.03
72 29 0.48
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.40
Consensus pattern (71 bp):
TAATCACTTTAATATTAAATTAATAAAATATATATCTAAAGATAAAGATTAAATTAAATTCAATA
TTAAGA
Found at i:97028013 original size:68 final size:71
Alignment explanation
Indices: 97027869--97028016 Score: 162
Period size: 68 Copynumber: 2.1 Consensus size: 71
97027859 TTAATCATTT
*
97027869 TAATATTAAATTAATAAAATATATCTCTACAAGATAAAGATTAAATTAAATTCAATATTAAGATA
1 TAATATTAAATTAATAAAATATATATCTA-AAGATAAAGATTAAATTAAATTCAATATTAAGATA
***
97027934 ATCACTT
65 ATCAAAA
* *
97027941 TAATATTAAATTAATAAAATCT-TAT-T-AAGAT-AAGTATTAAATTAAATTTAATATTAA-ATC
1 TAATATTAAATTAATAAAATATATATCTAAAGATAAAG-ATTAAATTAAATTCAATATTAAGAT-
* *
97028001 TATTAAAA
64 AATCAAAA
97028009 TAATATTA
1 TAATATTA
97028017 TTTTGGAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
67 5 0.08
68 37 0.56
70 1 0.02
71 2 0.03
72 21 0.32
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (71 bp):
TAATATTAAATTAATAAAATATATATCTAAAGATAAAGATTAAATTAAATTCAATATTAAGATAA
TCAAAA
Found at i:97028776 original size:5 final size:5
Alignment explanation
Indices: 97028766--97028797 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
97028756 GAAGTGTGAA
97028766 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97028798 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:97028791 original size:9 final size:9
Alignment explanation
Indices: 97028767--97028797 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
97028757 AAGTGTGAAA
97028767 AAATAAAAT
1 AAATAAAAT
97028776 AAAATAAAAT
1 -AAATAAAAT
97028786 AAATAAAAT
1 AAATAAAAT
97028795 AAA
1 AAA
97028798 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:97032090 original size:47 final size:46
Alignment explanation
Indices: 97031985--97032091 Score: 137
Period size: 47 Copynumber: 2.3 Consensus size: 46
97031975 GGGATAAGCA
*
97031985 ATAGTGCTTCATCGGAACAAATCGGAACTTTAACATTATAGTACAC
1 ATAGTGCTTCATCGGAACAAATCGGAACTTTAACAGTATAGTACAC
* * *
97032031 AAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-ACAC
1 ATAGTGCTTCATCGGAACAAAT-CGGAACTTTAACAGTA-TAGTACAC
97032078 ATAGTG-TCTCATCG
1 ATAGTGCT-TCATCG
97032092 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
46 21 0.40
47 29 0.56
48 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (46 bp):
ATAGTGCTTCATCGGAACAAATCGGAACTTTAACAGTATAGTACAC
Found at i:97032860 original size:4 final size:4
Alignment explanation
Indices: 97032851--97032879 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
97032841 TCCTTTTCTA
97032851 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
97032880 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:97036789 original size:55 final size:55
Alignment explanation
Indices: 97036724--97036831 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 55
97036714 TATGACAGCC
97036724 TTGTATTTGAAATTTGAAATTCAAACACAAACTACTTGATCTTATCCTTGAAGCT
1 TTGTATTTGAAATTTGAAATTCAAACACAAACTACTTGATCTTATCCTTGAAGCT
*
97036779 TTGTATTTGAAATTTGAAATTCAAACACAAACTATTTGATCTTATCCTTGAAG
1 TTGTATTTGAAATTTGAAATTCAAACACAAACTACTTGATCTTATCCTTGAAG
97036832 TTGACACCAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (55 bp):
TTGTATTTGAAATTTGAAATTCAAACACAAACTACTTGATCTTATCCTTGAAGCT
Found at i:97040836 original size:62 final size:62
Alignment explanation
Indices: 97040739--97040856 Score: 218
Period size: 62 Copynumber: 1.9 Consensus size: 62
97040729 GTCACCTCGT
* *
97040739 TTAATTAGGCTTGACAAAGAGTGGTATCAAAGCCAGGTTTTGTGATTCTATGTTTCTTAGGA
1 TTAATGAGGCTTGACAAAGAGTGGTATCAAAGCCAGGTTTAGTGATTCTATGTTTCTTAGGA
97040801 TTAATGAGGCTTGACAAAGAGTGGTATCAAAGCCAGGTTTAGTGATTCTATGTTTC
1 TTAATGAGGCTTGACAAAGAGTGGTATCAAAGCCAGGTTTAGTGATTCTATGTTTC
97040857 CTGGGATTCT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.36
Consensus pattern (62 bp):
TTAATGAGGCTTGACAAAGAGTGGTATCAAAGCCAGGTTTAGTGATTCTATGTTTCTTAGGA
Found at i:97049019 original size:2 final size:2
Alignment explanation
Indices: 97049012--97049039 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97049002 GTAAAGAATT
97049012 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97049040 AAAAGCATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97050184 original size:30 final size:30
Alignment explanation
Indices: 97050140--97050197 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97050130 CTGGGCATTT
*
97050140 CCACACGGGATGGCCACACGCCCATGTGAG
1 CCACACAGGATGGCCACACGCCCATGTGAG
* *
97050170 CCACACAGGTTGGCCACACGCCTATGTG
1 CCACACAGGATGGCCACACGCCCATGTG
97050198 CCATTCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14
Consensus pattern (30 bp):
CCACACAGGATGGCCACACGCCCATGTGAG
Found at i:97057250 original size:62 final size:62
Alignment explanation
Indices: 97057175--97057466 Score: 487
Period size: 62 Copynumber: 4.7 Consensus size: 62
97057165 CAATTTACCT
*
97057175 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* *
97057237 AATTTCTATTACAAAGTTTGTTCCAATTTTTAATGTCGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
*
97057299 AATTTCTATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
* * *
97057361 AATTTATATTAGAAAGTTTGTTCTAATTTTTAATATTGTAATGTATTTAATTTATATTAA-AA
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATA-TAACAA
* *
97057423 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTATAATGT
1 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGT
97057467 TGTAATGTTG
Statistics
Matches: 216, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
62 213 0.99
63 3 0.01
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATTTAATTTATATAACAA
Found at i:97057466 original size:8 final size:8
Alignment explanation
Indices: 97057453--97057484 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
97057443 TTCCAAGTTT
*
97057453 TAATGTTA
1 TAATGTTG
97057461 TAATGTTG
1 TAATGTTG
97057469 TAATGTTG
1 TAATGTTG
97057477 TAATGTTG
1 TAATGTTG
97057485 CAATTAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (8 bp):
TAATGTTG
Found at i:97058695 original size:14 final size:14
Alignment explanation
Indices: 97058676--97058710 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97058666 TAAATTACAT
97058676 GTTAGAATAGTATC
1 GTTAGAATAGTATC
97058690 GTTAGAATAGTATC
1 GTTAGAATAGTATC
*
97058704 TTTAGAA
1 GTTAGAA
97058711 AAAAAAGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:97060990 original size:31 final size:30
Alignment explanation
Indices: 97060940--97061040 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 30
97060930 CTACGGAGAT
* *
97060940 GGCGTCACCAGTGGTGCCGCCT-TTGCCCTA
1 GGCGTGACCAGGGGTGCCGCCTCTT-CCCTA
97060970 GGCGTGACCAGGAGGTGCCGCCTCTTCCCTA
1 GGCGTGACCAGG-GGTGCCGCCTCTTCCCTA
* *
97061001 GGTGTGACTAGGGGATGCCGCCTCTTCCCTA
1 GGCGTGACCAGGGG-TGCCGCCTCTTCCCTA
97061032 GGCGTGACC
1 GGCGTGACC
97061041 CCTTGTGTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
30 12 0.19
31 48 0.77
32 2 0.03
ACGTcount: A:0.12, C:0.34, G:0.33, T:0.22
Consensus pattern (30 bp):
GGCGTGACCAGGGGTGCCGCCTCTTCCCTA
Found at i:97061530 original size:23 final size:23
Alignment explanation
Indices: 97061504--97061548 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
97061494 TATATAATAA
* *
97061504 ATATATATTTTTTATTTTTAATC
1 ATATATATATTTTAATTTTAATC
*
97061527 ATATTTATATTTTAATTTTAAT
1 ATATATATATTTTAATTTTAAT
97061549 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATC
Found at i:97061619 original size:40 final size:41
Alignment explanation
Indices: 97061564--97061650 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
97061554 TATAATCAAT
*
97061564 TTTTATTATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
* * * *
97061605 TTTTAATATATTTTTT-ATTTGTTTCTTGTTTTAATATTTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
97061645 TTTTAA
1 TTTTAA
97061651 ATGTATTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 26 0.63
41 15 0.37
ACGTcount: A:0.23, C:0.01, G:0.09, T:0.67
Consensus pattern (41 bp):
TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
Found at i:97062714 original size:2 final size:2
Alignment explanation
Indices: 97062707--97062734 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97062697 TAATTGATAA
97062707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97062735 TCGCATGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97065258 original size:5 final size:5
Alignment explanation
Indices: 97065248--97065276 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
97065238 TTAAATTAGG
97065248 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
97065277 TAAAACAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:97066284 original size:2 final size:2
Alignment explanation
Indices: 97066277--97066309 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
97066267 TGTATAAGTA
97066277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97066310 TAATAACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97066380 original size:12 final size:13
Alignment explanation
Indices: 97066363--97066391 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
97066353 ACGAAAGGGG
97066363 AAAGAAAG-AAGA
1 AAAGAAAGAAAGA
97066375 AAAGAAAGAAAGA
1 AAAGAAAGAAAGA
97066388 AAAG
1 AAAG
97066392 GAAAAGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAGA
Found at i:97068682 original size:42 final size:43
Alignment explanation
Indices: 97068574--97068730 Score: 192
Period size: 43 Copynumber: 3.7 Consensus size: 43
97068564 AACTCATACA
* *
97068574 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
* * * **
97068617 ATGCCATTGTCCCAGACAGGGTCTTACATAAAATCAAATA-CG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
* *
97068659 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCACAATATCT
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCA-AATATCG
*
97068703 ATGCCAATGTCCCAGAA-GTGGTCTTACA
1 ATGCCAATGTCCCA-AACATGGTCTTACA
97068731 CGAAAACACA
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 32 0.33
43 37 0.39
44 25 0.26
45 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
Found at i:97072101 original size:7 final size:7
Alignment explanation
Indices: 97072091--97072117 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
97072081 AAAACATAAG
97072091 TTAAAAT
1 TTAAAAT
97072098 TTAAAAT
1 TTAAAAT
97072105 TTAAAAT
1 TTAAAAT
97072112 TTAAAA
1 TTAAAA
97072118 GTATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TTAAAAT
Found at i:97078829 original size:164 final size:164
Alignment explanation
Indices: 97078558--97078875 Score: 447
Period size: 164 Copynumber: 1.9 Consensus size: 164
97078548 GGCTTGCTGA
* * ** *
97078558 TTTACGATCACGACTTATTCTTATGATCCAATGATTTACGATCATGACCTTTGGTTTTCTAATAG
1 TTTACGATCACGACTTATTCTTACGATCCAATAATTTACGATCACAACCTTCGGTTTTCTAATAG
* * * *
97078623 TCCGCTAATTTACGATCACGATTGTCATTTTTAAAGCTCGTTGATTTACGACCACGGCTTATTCT
66 TCCACTAATTTACGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAACCACGGCTTATTCT
* *
97078688 TACAGTCCACTGATTTACGATCACAATTGTCATT
131 TACAGTCCACTAATTTACAATCACAATTGTCATT
* * * *
97078722 TTTACGATCATGGCTTATTCTTACGGTCCACTAATTTACGATCACAACCTTCGGTTTTCTAATAG
1 TTTACGATCACGACTTATTCTTACGATCCAATAATTTACGATCACAACCTTCGGTTTTCTAATAG
* * * *
97078787 TTCATTAATTTACGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCATGGCTTATTCT
66 TCCACTAATTTACGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAACCACGGCTTATTCT
* *
97078852 TACAGTTCGCTAATTTACAATCAC
131 TACAGTCCACTAATTTACAATCAC
97078876 GAACTTCGGT
Statistics
Matches: 133, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
164 133 1.00
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.39
Consensus pattern (164 bp):
TTTACGATCACGACTTATTCTTACGATCCAATAATTTACGATCACAACCTTCGGTTTTCTAATAG
TCCACTAATTTACGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAACCACGGCTTATTCT
TACAGTCCACTAATTTACAATCACAATTGTCATT
Found at i:97078913 original size:109 final size:109
Alignment explanation
Indices: 97078735--97079134 Score: 448
Period size: 109 Copynumber: 3.7 Consensus size: 109
97078725 ACGATCATGG
* * * * ** *
97078735 CTTATTCTTACGGTCCACTAATTTACGATCAC-AACCTTCGGTTTTCTAATAGTTCATTAATTTA
1 CTTATTCTTAC-GTTCGCTAATTTACAATCACGAACCTTCGGTTTTCTAACAGTTCGCTGATTTA
* *
97078799 CGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCATGG
65 CGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCACGA
*
97078844 CTTATTCTTACAGTTCGCTAATTTACAATCACGAA-CTTCGGTTTTCTAATAGTTCGCTGATTTA
1 CTTATTCTTAC-GTTCGCTAATTTACAATCACGAACCTTCGGTTTTCTAACAGTTCGCTGATTTA
* *
97078908 TGATCACAACTGTCATTTTTAAAGCTCATTGATTTACAATCACGA
65 CGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCACGA
* * * *** *
97078953 CTTATACTTACGGTCTGCTGATTTATGGTCATG-ACCTTCGGTTTTCTAACAGTTCGCTGATTTA
1 CTTATTCTTACGTTC-GCTAATTTACAATCACGAACCTTCGGTTTTCTAACAGTTCGCTGATTTA
* * * * *
97079017 CTATCACAATTATCATTTTTAAAGCTCGTTAATTTACGATCACGA
65 CGATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCACGA
* * * * * * * *
97079062 TTTATTCTTACGATTCGTTGATTTACAATCA-TAACCTTTGATTTTCTAACAATTCGATGATTTA
1 CTTATTCTTACG-TTCGCTAATTTACAATCACGAACCTTCGGTTTTCTAACAGTTCGCTGATTTA
97079126 CGATCACAA
65 CGATCACAA
97079135 TTTATTCTTA
Statistics
Matches: 247, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
108 4 0.02
109 239 0.97
110 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (109 bp):
CTTATTCTTACGTTCGCTAATTTACAATCACGAACCTTCGGTTTTCTAACAGTTCGCTGATTTAC
GATCACAACTGTCATTTTTAAAGCTCGTTGATTTACAATCACGA
Found at i:97078950 original size:36 final size:35
Alignment explanation
Indices: 97078794--97079342 Score: 141
Period size: 34 Copynumber: 15.1 Consensus size: 35
97078784 TAGTTCATTA
*
97078794 ATTTACGATCACAACTGTCATTTTTAAAGCTCGTTG
1 ATTTACAATCACAACT-TCATTTTTAAAGCTCGTTG
*** * * * * *
97078830 ATTTACAATCATGGCTT-ATTCTTACAGTTCGCTA
1 ATTTACAATCACAACTTCATTTTTAAAGCTCGTTG
* * *
97078864 ATTTACAATCACGAACTTCGGTTTTCTAATAGTTCGCTG
1 ATTTACAATCAC-AACTTC-ATTTT-TAA-AGCTCGTTG
** *
97078903 ATTTATGATCACAACTGTCATTTTTAAAGCTCATTG
1 ATTTACAATCACAACT-TCATTTTTAAAGCTCGTTG
* ** * * *
97078939 ATTTACAATCACGACTT-ATACTT-ACGGTCTGCTG
1 ATTTACAATCACAACTTCATTTTTAAAGCTC-GTTG
*** * * * * *
97078973 ATTTATGGTCATGACCTTCGGTTTTCTAACAGTTCGCTG
1 ATTTACAATCA-CAACTTC-ATTTT-TAA-AGCTCGTTG
* * *
97079012 ATTTACTATCACAATTATCATTTTTAAAGCTCGTTA
1 ATTTACAATCACAACT-TCATTTTTAAAGCTCGTTG
* * * * * *
97079048 ATTTACGATCACGA-TTTATTCTT-ACGATTCGTTG
1 ATTTACAATCACAACTTCATTTTTAAAG-CTCGTTG
* * ** *
97079082 ATTTACAATCATAACCTTTGATTTTCTAACAATTCGATG
1 ATTTACAATCACAA-C-TTCATTTT-TAA-AGCTCGTTG
* * * * *
97079121 ATTTACGATCACAA-TTTATTCTTACAA-TTCGTTT
1 ATTTACAATCACAACTTCATTTTTA-AAGCTCGTTG
* * * ** **
97079155 ATTTATAACCACAACTTTCGCTTTTCTAACAATTCACTG
1 ATTTACAATCACAAC-TTC-ATTTT-TAA-AGCTCGTTG
* *
97079194 ATTTACGATCACGAA-TGTCATTTTTAAAGCTCCTTG
1 ATTTACAATCAC-AACT-TCATTTTTAAAGCTCGTTG
** **
97079230 ATTTATTATCACGGCTT-ATTCTTATGAAA--T-GTTG
1 ATTTACAATCACAACTTCATT-TT-T-AAAGCTCGTTG
**
97079264 ATTTACAATCACAACTTTCGATTTTCTAACAATTCGTTG
1 ATTTACAATCACAAC-TTC-ATTTT-TAA-AGCTCGTTG
* *
97079303 ATTTACAATCACGACTGTCATTTTTAAAGCTAGTTG
1 ATTTACAATCACAACT-TCATTTTTAAAGCTCGTTG
97079339 ATTT
1 ATTT
97079343 CTTCGACAAG
Statistics
Matches: 367, Mismatches: 104, Indels: 84
0.66 0.19 0.15
Matches are distributed among these distances:
33 6 0.02
34 92 0.25
35 20 0.05
36 89 0.24
37 33 0.09
38 33 0.09
39 89 0.24
40 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (35 bp):
ATTTACAATCACAACTTCATTTTTAAAGCTCGTTG
Found at i:97079117 original size:39 final size:38
Alignment explanation
Indices: 97078994--97079314 Score: 158
Period size: 39 Copynumber: 8.8 Consensus size: 38
97078984 TGACCTTCGG
* * * *
97078994 TTTTCTAACAGTTCGCTGATTTACTATCACAA-TTATCA
1 TTTTCTAACAATTCGTTGATTTACAATCACAACTT-TGA
** * * *
97079032 TTTT-TAA-AGCTCGTTAATTTACGATCACGA-TTT-A
1 TTTTCTAACAATTCGTTGATTTACAATCACAACTTTGA
* * *
97079066 --TTCTTACGATTCGTTGATTTACAATCATAACCTTTGA
1 TTTTCTAACAATTCGTTGATTTACAATCACAA-CTTTGA
* *
97079103 TTTTCTAACAATTCGATGATTTACGATCACAA-TTT-A
1 TTTTCTAACAATTCGTTGATTTACAATCACAACTTTGA
* * * * *
97079139 --TTCTTACAATTCGTTTATTTATAACCACAACTTTCGC
1 TTTTCTAACAATTCGTTGATTTACAATCACAACTTT-GA
** * * *
97079176 TTTTCTAACAATTCACTGATTTACGATCACGAA-TGTCA
1 TTTTCTAACAATTCGTTGATTTACAATCAC-AACTTTGA
** * ** **
97079214 TTTT-TAA-AGCTCCTTGATTTATTATCACGGC-TT-A
1 TTTTCTAACAATTCGTTGATTTACAATCACAACTTTGA
* *
97079248 TTCTTATGA-AA-T-GTTGATTTACAATCACAACTTTCGA
1 TT-TTCTAACAATTCGTTGATTTACAATCACAACTTT-GA
97079285 TTTTCTAACAATTCGTTGATTTACAATCAC
1 TTTTCTAACAATTCGTTGATTTACAATCAC
97079315 GACTGTCATT
Statistics
Matches: 208, Mismatches: 53, Indels: 43
0.68 0.17 0.14
Matches are distributed among these distances:
32 2 0.01
33 2 0.01
34 58 0.28
35 10 0.05
36 46 0.22
37 15 0.07
38 9 0.04
39 64 0.31
40 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.09, T:0.42
Consensus pattern (38 bp):
TTTTCTAACAATTCGTTGATTTACAATCACAACTTTGA
Found at i:97079129 original size:73 final size:73
Alignment explanation
Indices: 97079048--97079207 Score: 225
Period size: 73 Copynumber: 2.2 Consensus size: 73
97079038 AAGCTCGTTA
* * *
97079048 ATTTACGATCACGATTTATTCTTACGATTCGTTGATTTACAATCATAACCTTT-GATTTTCTAAC
1 ATTTACGATCACGATTTATTCTTACAATTCGTTGATTTACAACCACAA-CTTTCGATTTTCTAAC
97079112 AATTCGA-TG
65 AATTC-ACTG
* * * *
97079121 ATTTACGATCACAATTTATTCTTACAATTCGTTTATTTATAACCACAACTTTCGCTTTTCTAACA
1 ATTTACGATCACGATTTATTCTTACAATTCGTTGATTTACAACCACAACTTTCGATTTTCTAACA
97079186 ATTCACTG
66 ATTCACTG
97079194 ATTTACGATCACGA
1 ATTTACGATCACGA
97079208 ATGTCATTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 5 0.06
73 72 0.94
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (73 bp):
ATTTACGATCACGATTTATTCTTACAATTCGTTGATTTACAACCACAACTTTCGATTTTCTAACA
ATTCACTG
Found at i:97079232 original size:109 final size:109
Alignment explanation
Indices: 97079119--97079342 Score: 279
Period size: 109 Copynumber: 2.1 Consensus size: 109
97079109 AACAATTCGA
* * * * *
97079119 TGATTTACGATCACAATTTATTCTTA-CAATTCGTTTATTTATAACCACAACTTTCGCTTTTCTA
1 TGATTTACGATCACAACTTATTCTTATCAAAT-GTTGATTTACAACCACAACTTTCGATTTTCTA
* *
97079183 ACAATTCACTGATTTACGATCACGAATGTCATTTTTAAAGCTCCT
65 ACAATTCACTGATTTACAATCACGAATGTCATTTTTAAAGCTACT
** ** * *
97079228 TGATTTATTATCACGGCTTATTCTTATGAAATGTTGATTTACAATCACAACTTTCGATTTTCTAA
1 TGATTTACGATCACAACTTATTCTTATCAAATGTTGATTTACAACCACAACTTTCGATTTTCTAA
** * *
97079293 CAATTCGTTGATTTACAATCACGACTGTCATTTTTAAAGCTAGT
66 CAATTCACTGATTTACAATCACGAATGTCATTTTTAAAGCTACT
97079337 TGATTT
1 TGATTT
97079343 CTTCGACAAG
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
109 94 0.97
110 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.42
Consensus pattern (109 bp):
TGATTTACGATCACAACTTATTCTTATCAAATGTTGATTTACAACCACAACTTTCGATTTTCTAA
CAATTCACTGATTTACAATCACGAATGTCATTTTTAAAGCTACT
Found at i:97079634 original size:2 final size:2
Alignment explanation
Indices: 97079621--97079659 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
97079611 CGATAAACCC
*
97079621 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97079660 TTCTAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:97080638 original size:2 final size:2
Alignment explanation
Indices: 97080631--97080655 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97080621 TCTATCTATC
97080631 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97080656 GTTAATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97081014 original size:2 final size:2
Alignment explanation
Indices: 97081007--97081041 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
97080997 ACAAAATCTA
*
97081007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97081042 CATGTATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:97081050 original size:4 final size:4
Alignment explanation
Indices: 97081043--97081082 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
97081033 ATATTTATAC
*
97081043 ATGT ATGT ATGT ATGT AAGT ATGT ATGT ATG- -TGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
97081083 TTTTATATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
4 30 0.94
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:97081108 original size:8 final size:8
Alignment explanation
Indices: 97081007--97081108 Score: 55
Period size: 8 Copynumber: 12.6 Consensus size: 8
97080997 ACAAAATCTA
*
97081007 ATATATAT
1 ATATATGT
*
97081015 ATATATAT
1 ATATATGT
*
97081023 ATATATAT
1 ATATATGT
*
97081031 ATATATTT
1 ATATATGT
*
97081039 ATACATGT
1 ATATATGT
*
97081047 ATGTATGT
1 ATATATGT
* *
97081055 ATGTAAGT
1 ATATATGT
*
97081063 ATGTATGT
1 ATATATGT
*
97081071 ATGTGTATGT
1 A--TATATGT
*
97081081 AT-T-TTT
1 ATATATGT
97081087 ATATAATGT
1 ATAT-ATGT
*
97081096 GTATATGT
1 ATATATGT
97081104 ATATA
1 ATATA
97081109 GGGAGGGATC
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
6 4 0.05
7 2 0.03
8 59 0.76
9 5 0.06
10 8 0.10
ACGTcount: A:0.36, C:0.01, G:0.13, T:0.50
Consensus pattern (8 bp):
ATATATGT
Found at i:97081631 original size:67 final size:67
Alignment explanation
Indices: 97081523--97081724 Score: 395
Period size: 67 Copynumber: 3.0 Consensus size: 67
97081513 TAGCTATCAA
*
97081523 ATTTCAATGCTTGATCAATATGGTATAAGTTTTAAGTGTTGTAGATATGATATAATTATTCTCAC
1 ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
97081588 GC
66 GC
97081590 ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
1 ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
97081655 GC
66 GC
97081657 ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
1 ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
97081722 GC
66 GC
97081724 A
1 A
97081725 CGATCCAATA
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 134 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (67 bp):
ATTTCAATGCTTGATCAATATGGTATAAGTTCTAAGTGTTGTAGATATGATATAATTATTCTCAC
GC
Found at i:97083808 original size:7 final size:7
Alignment explanation
Indices: 97083796--97083834 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
97083786 GCTGATGGCC
97083796 TGATGCT
1 TGATGCT
97083803 TGATGCT
1 TGATGCT
97083810 TGATGCT
1 TGATGCT
97083817 TGATGCT
1 TGATGCT
97083824 TGATGCT
1 TGATGCT
97083831 TGAT
1 TGAT
97083835 TTTTTTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.15, C:0.13, G:0.28, T:0.44
Consensus pattern (7 bp):
TGATGCT
Found at i:97083890 original size:6 final size:7
Alignment explanation
Indices: 97083875--97083899 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97083865 TATTATTAGA
97083875 TTTTATT
1 TTTTATT
97083882 TTTTATT
1 TTTTATT
97083889 TTTTATT
1 TTTTATT
97083896 TTTT
1 TTTT
97083900 TGGGTTTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:97086428 original size:4 final size:4
Alignment explanation
Indices: 97086419--97086469 Score: 59
Period size: 4 Copynumber: 12.8 Consensus size: 4
97086409 AGGAATCATG
* * *
97086419 TACA TACA TACA TGCA TACC TACA TGCA TACA TACA -AGCA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TA-CA TACA TACA
97086467 TAC
1 TAC
97086470 TCTGTTCTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 1 0.03
4 37 0.95
5 1 0.03
ACGTcount: A:0.43, C:0.27, G:0.06, T:0.24
Consensus pattern (4 bp):
TACA
Found at i:97086442 original size:12 final size:12
Alignment explanation
Indices: 97086421--97086467 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
97086411 GAATCATGTA
97086421 CATACATACATG
1 CATACATACATG
*
97086433 CATACCTACATG
1 CATACATACATG
*
97086445 CATACATACAAG
1 CATACATACATG
97086457 CATACATACAT
1 CATACATACAT
97086468 ACTCTGTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (12 bp):
CATACATACATG
Found at i:97088373 original size:25 final size:25
Alignment explanation
Indices: 97088345--97088395 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
97088335 AAAAACGTGC
97088345 ATTCCTATTCAACTTTAAAATGCAT
1 ATTCCTATTCAACTTTAAAATGCAT
97088370 ATTCCTATTCAACTTTAAAATGCAT
1 ATTCCTATTCAACTTTAAAATGCAT
97088395 A
1 A
97088396 CTTGATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.39
Consensus pattern (25 bp):
ATTCCTATTCAACTTTAAAATGCAT
Found at i:97090107 original size:5 final size:5
Alignment explanation
Indices: 97090097--97090123 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
97090087 ATACGAAAGC
97090097 GGGTG GGGTG GGGTG GGGTG GGGTG GG
1 GGGTG GGGTG GGGTG GGGTG GGGTG GG
97090124 TTTAATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GGGTG
Found at i:97096907 original size:6 final size:6
Alignment explanation
Indices: 97096896--97096922 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
97096886 AAAGAAAGAT
97096896 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
97096923 TAGATGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:97096923 original size:11 final size:11
Alignment explanation
Indices: 97096881--97096924 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
97096871 CTTCAAAAAT
*
97096881 AAATAAAAGAA
1 AAATAAAATAA
*
97096892 AGATAAAATAA
1 AAATAAAATAA
97096903 AAATAAAAATAA
1 AAAT-AAAATAA
97096915 AAATAAAATA
1 AAATAAAATA
97096925 GATGGACTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 18 0.62
12 11 0.38
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:97098745 original size:24 final size:25
Alignment explanation
Indices: 97098718--97098764 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
97098708 GAAATGAGGA
*
97098718 GAAAAAATGAGGGAAG-AAGAAATG
1 GAAAAAATGAGGAAAGAAAGAAATG
*
97098742 GAAAGAATGAGGAAAGAAAGAAA
1 GAAAAAATGAGGAAAGAAAGAAA
97098765 GAAGAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.06
Consensus pattern (25 bp):
GAAAAAATGAGGAAAGAAAGAAATG
Done.