Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 325 of 345
Found at i:97344442 original size:64 final size:64
Alignment explanation
Indices: 97344341--97344468 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
97344331 GTAAGTCAAG
97344341 CTTAGACTATAAATAAGCACTTCTCGGGAGGCAACCCGAGTACTAACACTGCTAATTTCCTCAT
1 CTTAGACTATAAATAAGCACTTCTCGGGAGGCAACCCGAGTACTAACACTGCTAATTTCCTCAT
* * * *
97344405 CTTAGACTCTAAATAAG-AGCTTTTCGGGAGGCAACCCGAGTATTAACATTGCTAATTTCCTCAT
1 CTTAGACTATAAATAAGCA-CTTCTCGGGAGGCAACCCGAGTACTAACACTGCTAATTTCCTCAT
97344469 TTTTTATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 1 0.02
64 58 0.98
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (64 bp):
CTTAGACTATAAATAAGCACTTCTCGGGAGGCAACCCGAGTACTAACACTGCTAATTTCCTCAT
Found at i:97345590 original size:18 final size:18
Alignment explanation
Indices: 97345545--97345602 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 18
97345535 CAGTTTCCCT
*
97345545 TTTTATTTATT-TATTTA
1 TTTTATTTATTATTTTTA
*
97345562 TTTT-TCT-TTATTTTTA
1 TTTTATTTATTATTTTTA
*
97345578 TTTTATTTATTATTATTA
1 TTTTATTTATTATTTTTA
97345596 TTCTTAT
1 TT-TTAT
97345603 CTGTTATTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 2 0.06
16 11 0.33
17 6 0.18
18 10 0.30
19 4 0.12
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATTTATTATTTTTA
Found at i:97345631 original size:11 final size:11
Alignment explanation
Indices: 97345617--97345646 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
97345607 TATTGGTCAA
97345617 TTATTATTTCT
1 TTATTATTTCT
97345628 TTATTATTTCT
1 TTATTATTTCT
97345639 TTATTATT
1 TTATTATT
97345647 ATTGTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTATTTCT
Found at i:97347305 original size:6 final size:6
Alignment explanation
Indices: 97347289--97347351 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
97347279 TCCGTTTGTC
* * * * *
97347289 TTTATG TTTATT GTTATT TTTATT TTTATT TTTCTT CTTATG TTTA-T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
97347336 TTTATCT TTATATT TT
1 TTTAT-T TT-TATT TT
97347352 GAACTGTGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
5 4 0.09
6 32 0.71
7 6 0.13
8 3 0.07
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:97347316 original size:18 final size:17
Alignment explanation
Indices: 97347289--97347346 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 17
97347279 TCCGTTTGTC
97347289 TTTATGTTTATTGTTATT
1 TTTATGTTTATT-TTATT
*
97347307 TTTATTTTTATTTT-TCT
1 TTTATGTTTATTTTAT-T
*
97347324 TCTTATGTTTATTTTATC
1 T-TTATGTTTATTTTATT
97347342 TTTAT
1 TTTAT
97347347 ATTTTGAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 1 0.03
17 8 0.24
18 24 0.71
19 1 0.03
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTATGTTTATTTTATT
Found at i:97355261 original size:16 final size:16
Alignment explanation
Indices: 97355240--97355271 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97355230 CAACAGATAA
97355240 TTGTATTGTCCACTAG
1 TTGTATTGTCCACTAG
97355256 TTGTATTGTCCACTAG
1 TTGTATTGTCCACTAG
97355272 AGTTGCAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (16 bp):
TTGTATTGTCCACTAG
Found at i:97376901 original size:44 final size:43
Alignment explanation
Indices: 97376810--97377015 Score: 178
Period size: 44 Copynumber: 4.8 Consensus size: 43
97376800 AGCTCGTACA
* * * *
97376810 ATGCCAACGTCCCATAC-GTGGTCTTACATG-TAATCAAATATCA
1 ATGCCAACGTCCCAGACAGTGGTCTTACACGAAAATC-AA-ATCG
*
97376853 ATGCC-ACTGTCCCAGACAG-GGTCATACACGAAAATCATAATCTG
1 ATGCCAAC-GTCCCAGACAGTGGTCTTACACGAAAATCA-AATC-G
97376897 ATGCCAACGTCCCA-A-ATGTGGTCTTACACG-AAATCAAATACG
1 ATGCCAACGTCCCAGACA-GTGGTCTTACACGAAAATCAAAT-CG
* * * *
97376939 ATGCCGATGTCCCAAACA-TGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAGACAGTGGTCTTACACGAAAAT--CAAATCG
*
97376983 ATGCCAACGTCTCAGAC-GTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACAGTGGTCTTACACGAAA
97377016 GCACATATCG
Statistics
Matches: 135, Mismatches: 13, Indels: 29
0.76 0.07 0.16
Matches are distributed among these distances:
42 31 0.23
43 40 0.30
44 57 0.42
45 7 0.05
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGTGGTCTTACACGAAAATCAAATCG
Found at i:97376991 original size:86 final size:87
Alignment explanation
Indices: 97376810--97377024 Score: 265
Period size: 86 Copynumber: 2.5 Consensus size: 87
97376800 AGCTCGTACA
* * * *
97376810 ATGCCAACGTCCCATACGTGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATATCAATGCCACTGTCCCAAACAGGGT
*
97376875 CATACACGAAAATCATAATCTG
66 CATACACGAAAATCAAAATCTG
* * *
97376897 ATGCCAACGTCCCAAATGTGGTCTTACACGAAATCAAATA-CGATGCCGA-TGTCCCAAACATGG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATATCAATGCC-ACTGTCCCAAACAGGG
* *
97376960 TCTTACACGTAAATCACAAATC-G
65 TCATACACGAAAATCA-AAATCTG
* * * *
97376983 ATGCCAACGTCTCAGACGTGGTCTTACACGAAAGCACATATC
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATATC
97377025 GGATCTTATG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
86 68 0.62
87 42 0.38
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (87 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATATCAATGCCACTGTCCCAAACAGGGT
CATACACGAAAATCAAAATCTG
Found at i:97378731 original size:18 final size:20
Alignment explanation
Indices: 97378708--97378745 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
97378698 AAAAATCTTA
97378708 TTTTATTTT-ATTTT-TATT
1 TTTTATTTTGATTTTATATT
97378726 TTTTATTTTGATTTTATATT
1 TTTTATTTTGATTTTATATT
97378746 AATTTAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
19 5 0.28
20 4 0.22
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTTATTTTGATTTTATATT
Found at i:97385801 original size:47 final size:47
Alignment explanation
Indices: 97385732--97385826 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
97385722 TACTAGGCTC
*
97385732 AACACGTTTAAAAAAAGACCTTATATTTTGTCCAAGCTCATTTGTTG
1 AACACGTTTAAAAAAAGACCTTATATTCTGTCCAAGCTCATTTGTTG
97385779 AACACGTTTAAAAAAAGACCTTATATTCTGTCCAAGCTCATTTGTTG
1 AACACGTTTAAAAAAAGACCTTATATTCTGTCCAAGCTCATTTGTTG
97385826 A
1 A
97385827 GTCCATATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (47 bp):
AACACGTTTAAAAAAAGACCTTATATTCTGTCCAAGCTCATTTGTTG
Found at i:97391672 original size:30 final size:30
Alignment explanation
Indices: 97391637--97391700 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
97391627 CAAAACAGGT
* *
97391637 TGAGAAGATTGTAGGGTTGATGAAGGTGCA
1 TGAGAAGATTGGACGGTTGATGAAGGTGCA
*
97391667 TGAGAAGATTGGACTGTTGATGAAGGTGCA
1 TGAGAAGATTGGACGGTTGATGAAGGTGCA
97391697 TGAG
1 TGAG
97391701 CTGTCAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.05, G:0.39, T:0.27
Consensus pattern (30 bp):
TGAGAAGATTGGACGGTTGATGAAGGTGCA
Found at i:97399524 original size:2 final size:2
Alignment explanation
Indices: 97399517--97399545 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
97399507 TCGATCGGAG
97399517 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97399546 GTACGCACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97399668 original size:29 final size:29
Alignment explanation
Indices: 97399636--97399708 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
97399626 CTTCGAGCTC
97399636 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
97399665 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
97399694 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
97399709 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:97423737 original size:27 final size:27
Alignment explanation
Indices: 97423707--97423785 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
97423697 GGGGTAAGCA
*
97423707 GTCATTTTACCTTATAAGGGCAAAACC
1 GTCATTTTACCTCATAAGGGCAAAACC
**
97423734 GTCATTTTACCTCATAAGGGCAAAATT
1 GTCATTTTACCTCATAAGGGCAAAACC
* *
97423761 GTCATTTTATCACATAAGGGCAAAA
1 GTCATTTTACCTCATAAGGGCAAAA
97423786 AAATCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (27 bp):
GTCATTTTACCTCATAAGGGCAAAACC
Found at i:97423804 original size:27 final size:27
Alignment explanation
Indices: 97423706--97423807 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
97423696 AGGGGTAAGC
* * *
97423706 AGTCATTTTACCTTATAAGGGCAAAAC
1 AGTCATTTTATCTCATAAGGGCAAAAA
* * *
97423733 CGTCATTTTACCTCATAAGGGCAAAAT
1 AGTCATTTTATCTCATAAGGGCAAAAA
* *
97423760 TGTCATTTTATCACATAAGGGCAAAAA
1 AGTCATTTTATCTCATAAGGGCAAAAA
* * *
97423787 AATCATTTTGTCTGATAAGGG
1 AGTCATTTTATCTCATAAGGG
97423808 TTCAGGTATG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
AGTCATTTTATCTCATAAGGGCAAAAA
Found at i:97429005 original size:6 final size:6
Alignment explanation
Indices: 97428986--97429058 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
97428976 TACCAGAACT
* * * *
97428986 AGAATC AAAATC AGAATC AG-GTGAC AGAATC AGGATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
97429035 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
97429059 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
5 3 0.06
6 40 0.78
7 6 0.12
8 2 0.04
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:97429029 original size:31 final size:31
Alignment explanation
Indices: 97428988--97429058 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
97428978 CCAGAACTAG
* * *
97428988 AATCAAAATCAGAATCAGGTGACAGAATCAG
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
* *
97429019 GATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
97429050 AATCAGAAT
1 AATCAGAAT
97429059 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:97429054 original size:19 final size:18
Alignment explanation
Indices: 97429013--97429055 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
97429003 CAGGTGACAG
* *
97429013 AATCAGGATCAGAATCAG
1 AATCAGGAACAGAATCAA
*
97429031 TATCAGGTAACAGAATCAA
1 AATCAGG-AACAGAATCAA
97429050 AATCAG
1 AATCAG
97429056 AATGTGAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (18 bp):
AATCAGGAACAGAATCAA
Found at i:97429244 original size:27 final size:28
Alignment explanation
Indices: 97429195--97429296 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 28
97429185 GCTCAGTTAT
* **
97429195 CAGATATTGTGACAGAGTAACCA-AATA
1 CAGATATTGTGGCAGAGCCACCAGAATA
97429222 CAGATATTGTGGCAGAGCCACCAGAAT-
1 CAGATATTGTGGCAGAGCCACCAGAATA
* *
97429249 -AGATATTTGTGGCATAGCCACTAGAA-A
1 CAGATA-TTGTGGCAGAGCCACCAGAATA
* *
97429276 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
97429297 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 5 0.08
27 51 0.80
28 8 0.12
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (28 bp):
CAGATATTGTGGCAGAGCCACCAGAATA
Found at i:97429458 original size:27 final size:27
Alignment explanation
Indices: 97429428--97429494 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
97429418 TAACCATATA
97429428 TTGGCACATAGCCTTAGGCAAATAAGT
1 TTGGCACATAGCCTTAGGCAAATAAGT
* *
97429455 TTGGCACATGGCCTTAGGCAAATACGT
1 TTGGCACATAGCCTTAGGCAAATAAGT
*
97429482 TTGGCACACAGCC
1 TTGGCACATAGCC
97429495 ATAATCAGGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (27 bp):
TTGGCACATAGCCTTAGGCAAATAAGT
Found at i:97429516 original size:22 final size:22
Alignment explanation
Indices: 97429482--97429546 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
97429472 GCAAATACGT
*
97429482 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
97429504 TTGGTACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
97429526 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
97429547 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:97430031 original size:27 final size:27
Alignment explanation
Indices: 97429991--97430086 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
97429981 TACCCCGCAA
* * *
97429991 GGTATCTCGATAATTATACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
97430018 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
97430045 GGTATTTCGGCATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
97430072 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
97430087 TTGTAAATCG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:97430156 original size:27 final size:26
Alignment explanation
Indices: 97430119--97430305 Score: 131
Period size: 27 Copynumber: 6.9 Consensus size: 26
97430109 TAATTCTGTA
* *
97430119 AATCAATGGTACTTTGGTAATTTTAC
1 AATCAAGGGTATTTTGGTAATTTTAC
* *** *
97430145 AAGTCGAGGGTATTTCAATAATTTCAC
1 AA-TCAAGGGTATTTTGGTAATTTTAC
* ***
97430172 AGGTCAAGGGTATTTCAATAATTTTCAC
1 A-ATCAAGGGTATTTTGGTAATTTT-AC
* *
97430200 AAATCAGGGGTATTTTGGTAATTTTAT
1 -AATCAAGGGTATTTTGGTAATTTTAC
* * *
97430227 AAACTAGGGGTATTTTGGTAATTTTATA
1 AATC-AAGGGTATTTTGGTAATTTTA-C
* *
97430255 AACCAAGGGTATTTTAGTAATTTTAC
1 AATCAAGGGTATTTTGGTAATTTTAC
* *
97430281 AAACCAGGAGTATTTTGGTAATTTT
1 AATCAAGG-GTATTTTGGTAATTTT
97430306 TTAAACCAAG
Statistics
Matches: 129, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
26 11 0.09
27 94 0.73
28 23 0.18
29 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
AATCAAGGGTATTTTGGTAATTTTAC
Found at i:97430238 original size:82 final size:82
Alignment explanation
Indices: 97430126--97430319 Score: 196
Period size: 82 Copynumber: 2.4 Consensus size: 82
97430116 GTAAATCAAT
* * * * ***
97430126 GGTACTTTGGTAATTTTA-CAAGTCGAGGGTATTTCAATAATTTCACAGGTCAAGGGTATTTCAA
1 GGTATTTTGGTAATTTTATAAACTAGAGGGTATTTCAATAATTTCACAAACCAAGGGTATTTCAA
*
97430190 TAATTTTCACAAATCAGG
66 TAATTTT-ACAAACCAGG
*** * * * *
97430208 GGTATTTTGGTAATTTTATAAACTAG-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
1 GGTATTTTGGTAATTTTATAAACTAGAGGGTATTTCAATAATTTCACAAACCAAGGGTATTTCAA
97430272 TAATTTTACAAACCAGG
66 TAATTTTACAAACCAGG
* * *
97430289 AGTATTTTGGTAATTTTTTAAACCA-AGGGTA
1 GGTATTTTGGTAATTTTATAAACTAGAGGGTA
97430320 AAACGATAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
81 36 0.39
82 52 0.57
83 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (82 bp):
GGTATTTTGGTAATTTTATAAACTAGAGGGTATTTCAATAATTTCACAAACCAAGGGTATTTCAA
TAATTTTACAAACCAGG
Found at i:97430311 original size:27 final size:27
Alignment explanation
Indices: 97430190--97430319 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
97430180 GGTATTTCAA
* *
97430190 TAATTTTCACAAATCAGGGGTATTTTGG
1 TAATTTT-ATAAACCAGGGGTATTTTGG
*
97430218 TAATTTTATAAACTAGGGGTATTTTGG
1 TAATTTTATAAACCAGGGGTATTTTGG
* *
97430245 TAATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTATAAACCAGGGGTATTTTGG
* *
97430272 TAATTTTACAAACCAGGAGTATTTTGG
1 TAATTTTATAAACCAGGGGTATTTTGG
* *
97430299 TAATTTTTTAAACCAAGGGTA
1 TAATTTTATAAACCAGGGGTA
97430320 AAACGATAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 81 0.92
28 7 0.08
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.40
Consensus pattern (27 bp):
TAATTTTATAAACCAGGGGTATTTTGG
Found at i:97430329 original size:27 final size:27
Alignment explanation
Indices: 97430297--97430616 Score: 415
Period size: 27 Copynumber: 11.9 Consensus size: 27
97430287 GGAGTATTTT
* * *
97430297 GGTAATTTTTTAAACCAAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
97430324 GATAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
97430351 GGTAATTTTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
97430378 GGTAATTTTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
** *
97430405 GGTAATTTTATAAATTAAGGGTAAAAA
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
97430432 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
97430459 AGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
** *
97430486 GGTAATTTTATAAATTAAGGGTAAAAA
1 GGTAATTTTATAAATCGAGGGTAAAAC
*
97430513 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAAC
* *
97430540 GGTAATTTTATAAATTGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
* * *
97430567 GGTAATTCTATAAATCGAGGTTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAAC
* *
97430594 GGTAATTCTGTAAATCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
97430617 CTTTGATAAT
Statistics
Matches: 256, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 256 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
GGTAATTTTATAAATCGAGGGTAAAAC
Found at i:97430330 original size:81 final size:82
Alignment explanation
Indices: 97430176--97430330 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 82
97430166 TTTCACAGGT
* * * * **
97430176 CAAGGGTATTTCAATAATTTTCACAAATCAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATT
1 CAAGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACCAAGGGTAAA
** *
97430241 TTGGTAATTTTATAAAC
66 ACGATAATTTTATAAAC
* * *
97430258 CAAGGGTATTTTAGTAATTTT-ACAAACCAGGAGTATTTTGGTAATTTTTTAAACCAAGGGTAAA
1 CAAGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACCAAGGGTAAA
97430322 ACGATAATT
66 ACGATAATT
97430331 CTGTAAATCG
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
81 42 0.69
82 19 0.31
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (82 bp):
CAAGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACCAAGGGTAAA
ACGATAATTTTATAAAC
Found at i:97430606 original size:81 final size:81
Alignment explanation
Indices: 97430297--97430616 Score: 460
Period size: 81 Copynumber: 4.0 Consensus size: 81
97430287 GGAGTATTTT
* * * * * * * * *
97430297 GGTAATTTTTTAAACCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGT
97430362 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* *
97430378 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAAAGGTAATTTTGT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGT
97430443 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *
97430459 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAAAGGTAATTTTGT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGT
97430524 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * * *
97430540 GGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGTTAAAATGGTAATTCTGT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGT
97430605 AAATCGAGGGTA
66 AAATCGAGGGTA
97430617 CTTTGATAAT
Statistics
Matches: 217, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 217 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (81 bp):
GGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGT
AAATCGAGGGTAAAAC
Found at i:97432201 original size:15 final size:15
Alignment explanation
Indices: 97432181--97432212 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
97432171 TGCGGATACG
97432181 TGATCCCTCTAAGGC
1 TGATCCCTCTAAGGC
*
97432196 TGATCCGTCTAAGGC
1 TGATCCCTCTAAGGC
97432211 TG
1 TG
97432213 GAAATTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.28
Consensus pattern (15 bp):
TGATCCCTCTAAGGC
Found at i:97432435 original size:6 final size:6
Alignment explanation
Indices: 97432426--97432504 Score: 72
Period size: 6 Copynumber: 12.8 Consensus size: 6
97432416 TACCAGAACT
* *
97432426 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGGATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
97432475 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
97432505 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:97432462 original size:31 final size:31
Alignment explanation
Indices: 97432426--97432504 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
97432416 TACCAGAACT
*
97432426 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
97432457 AGAATCAGGATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
97432488 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
97432505 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:97432500 original size:19 final size:18
Alignment explanation
Indices: 97432459--97432501 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
97432449 CAGGTGACAG
* *
97432459 AATCAGGATCAGAATCAG
1 AATCAGGAACAGAATCAA
*
97432477 TATCAGGTAACAGAATCAA
1 AATCAGG-AACAGAATCAA
97432496 AATCAG
1 AATCAG
97432502 AATGTGAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (18 bp):
AATCAGGAACAGAATCAA
Found at i:97432683 original size:27 final size:28
Alignment explanation
Indices: 97432641--97432735 Score: 108
Period size: 27 Copynumber: 3.5 Consensus size: 28
97432631 GCTCAGTTAT
* **
97432641 CAGATATTGTGACAGAGTAACCA-AATA
1 CAGATATTGTGGCAGAGCCACCAGAATA
97432668 CAGATATTGTGGCAGAGCCACCAGAAT-
1 CAGATATTGTGGCAGAGCCACCAGAATA
*
97432695 -AGATATTTGTGGCATAGCCACCAGAA-A
1 CAGATA-TTGTGGCAGAGCCACCAGAATA
*
97432722 CAGATAATGTGGCA
1 CAGATATTGTGGCA
97432736 AAGTCACTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.08
27 46 0.78
28 8 0.14
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (28 bp):
CAGATATTGTGGCAGAGCCACCAGAATA
Found at i:97432935 original size:22 final size:22
Alignment explanation
Indices: 97432901--97432965 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
97432891 GCAAATACGT
*
97432901 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
97432923 TTGGTACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
97432945 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
97432966 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:97433466 original size:27 final size:27
Alignment explanation
Indices: 97433392--97433585 Score: 284
Period size: 27 Copynumber: 7.3 Consensus size: 27
97433382 AGGGCAAAAT
* * * *
97433392 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97433418 GGTAATTATA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97433444 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97433471 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97433498 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97433525 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97433552 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97433579 GGTAATT
1 GGTAATT
97433586 TTGTAAATCG
Statistics
Matches: 152, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 5 0.03
26 25 0.16
27 122 0.80
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:97433599 original size:27 final size:27
Alignment explanation
Indices: 97433569--97434072 Score: 132
Period size: 27 Copynumber: 18.7 Consensus size: 27
97433559 CTACCCTACA
*
97433569 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * * * *
97433596 AGGGTAAAAT-GATAATTCTGTAAATCA
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* * *
97433623 ATGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* ** * **
97433650 AGGGTATTGCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** *
97433677 AGGGTATTTCAATAATTTTCACAAATC-
1 AGGGTATTTCGGTAATTTT-ATAAATCG
* * *
97433704 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
97433731 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
** * * *
97433759 AGGGTATTTTAGTAATTTCACAAA-CC
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
97433785 AGGAGTATTTTGGTAATTTTTTAAA-CAA
1 AGG-GTATTTCGGTAATTTTATAAATC-G
** * * * *
97433813 AGGGTAAAAT-GATAATTCTGTAAATCT
1 AGGGT-ATTTCGGTAATTTTATAAATCG
*** *
97433840 AGGGTAAAACGGTAATTTTATAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
***
97433867 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** **
97433894 AGGGTAAAAT-GGTAATTTTATAAATTA
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* **** *
97433921 AAGGTAAAAAGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
97433948 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
* ** * *
97433975 CGGGTAAAAT-GGTAATTCTATAAATCA
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** * *
97434002 AGGGTAAAAT-GGTAATTCTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* * * *
97434029 GGGGTACTTT-GATAATTTTACAACT-G
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* *
97434055 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
97434073 GGTAAACTGA
Statistics
Matches: 381, Mismatches: 79, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.01
26 28 0.07
27 314 0.82
28 36 0.09
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:97433738 original size:82 final size:81
Alignment explanation
Indices: 97433625--97433804 Score: 191
Period size: 82 Copynumber: 2.2 Consensus size: 81
97433615 GTAAATCAAT
* * * *** *
97433625 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTGCAATAATTTTACAGGTCGAGGGTATTTCAAT
1 GGTATTTTGGTAATTTTACAACTAGAGGGTATTGCAATAATTTTACAAACCAAGGGTATTTCAAT
*
97433690 AATTTTCACAAATCAGG
66 AA-TTTCACAAACCAGG
**** * * *
97433707 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
1 GGTATTTTGGTAATTTTAC-AACTAGAGGGTATTGCAATAATTTTACAAACCAAGGGTATTTCAA
97433771 TAATTTCACAAACCAGG
65 TAATTTCACAAACCAGG
*
97433788 AGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
97433805 TTAAACAAAG
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 29 0.36
82 48 0.59
83 4 0.05
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAACTAGAGGGTATTGCAATAATTTTACAAACCAAGGGTATTTCAAT
AATTTCACAAACCAGG
Found at i:97433782 original size:54 final size:54
Alignment explanation
Indices: 97433706--97433818 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
97433696 CACAAATCAG
* * * * *
97433706 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACAAA
*
97433760 GGGTATTTTAGTAATTTCACAAACCAGGAGTATTTTGGTAATTTTTTAAACAAA
1 GGGTATTTTAGTAATTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACAAA
97433814 GGGTA
1 GGGTA
97433819 AAATGATAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTCACAAACCAGGAGTATTTTGGTAATTTTATAAACAAA
Found at i:97433829 original size:81 final size:82
Alignment explanation
Indices: 97433677--97433829 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 82
97433667 TTACAGGTCG
* * * * ***
97433677 AGGGTATTTCAATAATTTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTACAAACAAAGGGTAAAAT
*
97433742 GGTAATTTTATAAACCA
66 GATAATTTTATAAACCA
* * **
97433759 AGGGTATTTTAGTAA-TTTCACAAACCAGGAGTATTTTGGTAATTTTTTAAACAAAGGGTAAAAT
1 AGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTACAAACAAAGGGTAAAAT
97433823 GATAATT
66 GATAATT
97433830 CTGTAAATCT
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
81 46 0.78
82 13 0.22
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (82 bp):
AGGGTATTTCAATAATTTTCACAAACCAGGAGTATTTTGGTAATTTTACAAACAAAGGGTAAAAT
GATAATTTTATAAACCA
Found at i:97434034 original size:54 final size:54
Alignment explanation
Indices: 97433813--97434026 Score: 275
Period size: 54 Copynumber: 4.0 Consensus size: 54
97433803 TTTTAAACAA
* * * *
97433813 AGGGTAAAATGATAATTCTGTAAATCTAGGGTAAAACGGTAATTTTATAAATTG
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTG
* * * * *
97433867 AGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTA
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTG
* * * *
97433921 AAGGTAAAAAGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTG
* * * *
97433975 CGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTGTAAAT
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAAT
97434027 CGGGGGTACT
Statistics
Matches: 139, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 139 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.32
Consensus pattern (54 bp):
AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTG
Found at i:97434045 original size:81 final size:81
Alignment explanation
Indices: 97433813--97434034 Score: 309
Period size: 81 Copynumber: 2.7 Consensus size: 81
97433803 TTTTAAACAA
* * * * * *
97433813 AGGGTAAAATGATAATTCTGTAAATCTAGGGTAAAACGGTAATTTTATAAATTGAGGGTAAAACG
1 AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGTAAATCGAGGGTAAAACG
*
97433878 GTAATTTTATAAATCG
66 GTAATTCTATAAATCG
* * *
97433894 AGGGTAAAATGGTAATTTTATAAATTAAAGGTAAAAAGGTAATTTTGTAAATCGAGGGTAAAACG
1 AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGTAAATCGAGGGTAAAACG
*
97433959 GTAATTCTATAAATTG
66 GTAATTCTATAAATCG
* * * *
97433975 CGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTGTAAATCGGGGGTA
1 AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGTAAATCGAGGGTA
97434035 CTTTGATAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 123 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAAGGTAATTTTGTAAATCGAGGGTAAAACG
GTAATTCTATAAATCG
Found at i:97435123 original size:18 final size:18
Alignment explanation
Indices: 97435100--97435134 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97435090 AAATGGAGAG
*
97435100 TTCTATTTGTTTCTAAAT
1 TTCTATTTGTCTCTAAAT
97435118 TTCTATTTGTCTCTAAA
1 TTCTATTTGTCTCTAAA
97435135 GTGGCCAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.57
Consensus pattern (18 bp):
TTCTATTTGTCTCTAAAT
Found at i:97436099 original size:196 final size:195
Alignment explanation
Indices: 97435741--97436125 Score: 689
Period size: 196 Copynumber: 2.0 Consensus size: 195
97435731 ATAAGTTCTT
*
97435741 GACACTATAAAAACTCCGAAATAAACCTAATTCTAAAAATATGCTAAAAACATTACAAATATGAT
1 GACACTATAAAAACTCCAAAATAAACCTAATTCTAAAAATATGCTAAAAACATTACAAATATGAT
*
97435806 TAGTCTAAAATTAATCTACTTTATTGAAAATTAAAACACTAAAAAATTAAAATTACTTAAGAAAA
66 TAGTCTAAAATTAATATACTTTATTGAAAATTAAAACACTAAAAAATTAAAATTACTTAAGAAAA
*
97435871 AAGTCAAATTAAGTGTAAAATGAAGGTAAAATGATGCACACATAGAGACTAATCAACCTAATAAA
131 AAGTCAAATTAAATGTAAAATGAAGGTAAAATGATGCACACATAGAGACTAATCAACCTAATAAA
* *
97435936 GACACTATAATAACTCCAAAAATAGACCTAATTCTAAAAATATGCTAAAAACATTACAAATATGA
1 GACACTATAAAAACTCC-AAAATAAACCTAATTCTAAAAATATGCTAAAAACATTACAAATATGA
* *
97436001 TTAGTCTAAAATTAATATACTTTATTGAAAATTAAGACACTAAAAACTTAAAATTACTTAAGAAA
65 TTAGTCTAAAATTAATATACTTTATTGAAAATTAAAACACTAAAAAATTAAAATTACTTAAGAAA
*
97436066 AAAGTCAAATTAAATGTAAAATGAAGGTAAAATGATGCACACATAGAGACTGATCAACCT
130 AAAGTCAAATTAAATGTAAAATGAAGGTAAAATGATGCACACATAGAGACTAATCAACCT
97436126 TTTTACTAGG
Statistics
Matches: 181, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
195 16 0.09
196 165 0.91
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.26
Consensus pattern (195 bp):
GACACTATAAAAACTCCAAAATAAACCTAATTCTAAAAATATGCTAAAAACATTACAAATATGAT
TAGTCTAAAATTAATATACTTTATTGAAAATTAAAACACTAAAAAATTAAAATTACTTAAGAAAA
AAGTCAAATTAAATGTAAAATGAAGGTAAAATGATGCACACATAGAGACTAATCAACCTAATAAA
Found at i:97437136 original size:46 final size:46
Alignment explanation
Indices: 97437010--97437320 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
97437000 TTTGACATGA
* * * * * *
97437010 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** **
97437056 TGCCATGGTAT-TTTCAACCATGGTCTTGTTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
97437101 TGCCATGGTATATTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
97437147 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
97437193 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97437239 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
97437277 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
97437321 AGAGCACACT
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
38 34 0.14
40 3 0.01
43 1 0.00
44 7 0.03
45 34 0.14
46 160 0.67
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:97437284 original size:38 final size:38
Alignment explanation
Indices: 97437233--97437308 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
97437223 ACATTTTATA
97437233 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
97437271 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
97437309 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:97437744 original size:43 final size:43
Alignment explanation
Indices: 97437696--97437778 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
97437686 ATTTTCATAC
97437696 AATGAACATTCAAATCATATTCACATCAATAACATACAATGCA
1 AATGAACATTCAAATCATATTCACATCAATAACATACAATGCA
97437739 AATGAACATTCAAATCATATTCACATCAATAACATACAAT
1 AATGAACATTCAAATCATATTCACATCAATAACATACAAT
97437779 CTCAAGCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (43 bp):
AATGAACATTCAAATCATATTCACATCAATAACATACAATGCA
Found at i:97441427 original size:27 final size:27
Alignment explanation
Indices: 97441397--97441457 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
97441387 ATAGCATCAT
*
97441397 AGATAGTCTACCAAAACATTAAACATG
1 AGATAGTCTAACAAAACATTAAACATG
* ** *
97441424 AGATTGTCTAATGAGACATTAAACATG
1 AGATAGTCTAACAAAACATTAAACATG
97441451 AGATAGT
1 AGATAGT
97441458 TCATCGGGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.26
Consensus pattern (27 bp):
AGATAGTCTAACAAAACATTAAACATG
Found at i:97441552 original size:27 final size:27
Alignment explanation
Indices: 97441412--97441587 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
97441402 GTCTACCAAA
* * *
97441412 ACATTAAACATGAGATTGTCTAATGAG
1 ACATTAAACACGAGATAGTCTAATGGG
* *
97441439 ACATTAAACATGAGATAGT-TCATCGGG
1 ACATTAAACACGAGATAGTCTAAT-GGG
* * * ***
97441466 ATACTAAACACGAGATAGTCCACCAGG
1 ACATTAAACACGAGATAGTCTAATGGG
* * * *
97441493 ACATTTAACA-TAGATAGT-TGACGGG
1 ACATTAAACACGAGATAGTCTAATGGG
* * *
97441518 ACACTAAACACGAGATAGTCTGATAGG
1 ACATTAAACACGAGATAGTCTAATGGG
* * *
97441545 ACATTAAATACAAGATAATCTAATGGG
1 ACATTAAACACGAGATAGTCTAATGGG
* *
97441572 ACACTGAACACGAGAT
1 ACATTAAACACGAGAT
97441588 GGTCCACCAG
Statistics
Matches: 111, Mismatches: 34, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
25 11 0.10
26 17 0.15
27 83 0.75
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (27 bp):
ACATTAAACACGAGATAGTCTAATGGG
Found at i:97445382 original size:42 final size:43
Alignment explanation
Indices: 97445274--97445388 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 43
97445264 TTTCGTTATG
* * * *
97445274 TGATTTCGTGTAAGACCAC-GTATGGGACGTTGGCATCGAATTC
1 TGATTTCGTGTAAGACC-CTGTCTGGGACATCGACATCGAATTC
* * *
97445317 TGTTTTACGTGTAAGACCATGTCTGGGACATCGACATCGTA-TC
1 TGATTT-CGTGTAAGACCCTGTCTGGGACATCGACATCGAATTC
97445360 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTTCGTGTAAGACCCTGTCTGGGACA
97445389 GTGGCATCGA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 22 0.36
43 12 0.20
44 27 0.44
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACATCGACATCGAATTC
Found at i:97445437 original size:43 final size:42
Alignment explanation
Indices: 97445274--97445438 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
97445264 TTTCGTTATG
* *
97445274 TGATTTCGTGTAAGACCACGTATGGGACGTTGGCATCGAATTC
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTC
* * * * *
97445317 TGTTTTACGTGTAAGACCATGTCTGGGACATCGACATCG-TATC
1 TG-ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TC
* *
97445360 TGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATGTT
1 TGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TC
* *
97445403 TGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
97445439 TGTATATGTT
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 30 0.31
43 37 0.38
44 30 0.31
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (42 bp):
TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTC
Found at i:97452984 original size:25 final size:24
Alignment explanation
Indices: 97452938--97452984 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
97452928 CTATATAAGC
* *
97452938 ATTTTGTATAAACACTTTATAATT
1 ATTTTGTATAAACAATTCATAATT
*
97452962 ATTTCTGTATAACCAATTCATAA
1 ATTT-TGTATAAACAATTCATAA
97452985 AATCATTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (24 bp):
ATTTTGTATAAACAATTCATAATT
Found at i:97453047 original size:13 final size:13
Alignment explanation
Indices: 97452969--97453049 Score: 63
Period size: 13 Copynumber: 6.2 Consensus size: 13
97452959 ATTATTTCTG
*
97452969 TATAACCAATTCA
1 TATAACCATTTCA
* *
97452982 TAAAATCATTTCA
1 TATAACCATTTCA
** *
97452995 TATATTCATTTTA
1 TATAACCATTTCA
* *
97453008 TACAACCATTTCG
1 TATAACCATTTCA
** *
97453021 TATAACTGTCTCA
1 TATAACCATTTCA
97453034 TATAACCATTTCA
1 TATAACCATTTCA
97453047 TAT
1 TAT
97453050 TACACATTTA
Statistics
Matches: 49, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (13 bp):
TATAACCATTTCA
Found at i:97459621 original size:17 final size:18
Alignment explanation
Indices: 97459589--97459624 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
97459579 TTGGGCCGAA
97459589 ATGGACAGTGTAGGCCTC
1 ATGGACAGTGTAGGCCTC
*
97459607 ATGGAC-GTGTGGGCCTC
1 ATGGACAGTGTAGGCCTC
97459624 A
1 A
97459625 CACCGGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.19, C:0.22, G:0.36, T:0.22
Consensus pattern (18 bp):
ATGGACAGTGTAGGCCTC
Found at i:97475939 original size:26 final size:25
Alignment explanation
Indices: 97475902--97475959 Score: 98
Period size: 26 Copynumber: 2.3 Consensus size: 25
97475892 ATGTAAAAGT
97475902 GTTAAGGAAGAAGTCTATCCCACTGA
1 GTTAAGGAAGAAGTCTATCCCACT-A
*
97475928 TTTAAGGAAGAAGTCTATCCCACTA
1 GTTAAGGAAGAAGTCTATCCCACTA
97475953 GTTAAGG
1 GTTAAGG
97475960 TACTTTGGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (25 bp):
GTTAAGGAAGAAGTCTATCCCACTA
Found at i:97477526 original size:43 final size:43
Alignment explanation
Indices: 97477465--97477552 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
97477455 TTGAATCTAG
*
97477465 GTTTGGTATTCGTAGAAATTTGCACTCTTTCGCAACAAGGTGT
1 GTTTGGTATTCGTAGAAATTTGCACTCTTTCGCAACAAAGTGT
* * **
97477508 GTTTGGTGTTCGTGGAAATTTGTGCTCTTTCGCAACAAAGTGT
1 GTTTGGTATTCGTAGAAATTTGCACTCTTTCGCAACAAAGTGT
97477551 GT
1 GT
97477553 AAACACTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (43 bp):
GTTTGGTATTCGTAGAAATTTGCACTCTTTCGCAACAAAGTGT
Found at i:97481189 original size:25 final size:25
Alignment explanation
Indices: 97481158--97481227 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
97481148 GCTCTCTCTC
* * *
97481158 GAGCCATATAAGGGGAAGCTTATGT
1 GAGCCATATAACGGGAAGCTAATCT
97481183 GAGCCATGA-AACGGGAAGCTAATCT
1 GAGCCAT-ATAACGGGAAGCTAATCT
** *
97481208 GAGCTTTATAATGGGAAGCT
1 GAGCCATATAACGGGAAGCT
97481228 CATAAGAGCC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTAATCT
Found at i:97481391 original size:26 final size:26
Alignment explanation
Indices: 97481362--97481411 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
97481352 AGAGAGACAT
97481362 TAATCAGGAAGCTCACAAAGAGCCTA
1 TAATCAGGAAGCTCACAAAGAGCCTA
*
97481388 TAATCAGGAAGCTCACGAAGAGCC
1 TAATCAGGAAGCTCACAAAGAGCC
97481412 AAATAACGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.14
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAGCCTA
Found at i:97483024 original size:21 final size:21
Alignment explanation
Indices: 97482941--97483028 Score: 58
Period size: 21 Copynumber: 4.2 Consensus size: 21
97482931 GTGCTAACAG
* * *
97482941 AAACCCGTAAGGGTTGAAC-A
1 AAACTCGTAAGAGCTGAACTA
*
97482961 AAAGCTCATAAGAGCTGAA-TGA
1 AAA-CTCGTAAGAGCTGAACT-A
*
97482983 AAACCTAGTAAG-GCT-AGACTA
1 AAA-CTCGTAAGAGCTGA-ACTA
*
97483004 AAACTCGTAAGAGTTGAACTA
1 AAACTCGTAAGAGCTGAACTA
97483025 AAAC
1 AAAC
97483029 CCATTAGGGT
Statistics
Matches: 52, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
20 11 0.21
21 29 0.56
22 12 0.23
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.18
Consensus pattern (21 bp):
AAACTCGTAAGAGCTGAACTA
Found at i:97486064 original size:27 final size:27
Alignment explanation
Indices: 97486034--97486085 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
97486024 ACACTTTTCG
97486034 ACTAAGTGCATCTGCAACCACATTAGC
1 ACTAAGTGCATCTGCAACCACATTAGC
97486061 ACTAAGTGCATCTGCAACCACATTA
1 ACTAAGTGCATCTGCAACCACATTA
97486086 ACCTTTCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (27 bp):
ACTAAGTGCATCTGCAACCACATTAGC
Found at i:97489427 original size:93 final size:93
Alignment explanation
Indices: 97489301--97489471 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
97489291 CCCATAAGCA
* *
97489301 AACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAAC
97489366 GAGTTCAGATGCCTAGTTACATTTTATG
66 GAGTTCAGATGCCTAGTTACATTTTATG
* * *
97489394 AACTCAGACTCCACTCAACGAGTTC-GGATGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
1 AACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
* *
97489458 TGAGTTCGGATGCC
65 CGAGTTCAGATGCC
97489472 CAAATATCCG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAAATCAGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATTTTATG
Found at i:97489465 original size:46 final size:46
Alignment explanation
Indices: 97489292--97489469 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
97489282 TGTAACTCAC
** * * *
97489292 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* * * *
97489338 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * *
97489384 ACATTTTA-TGAACTCAGACTCCACTCAACGAGTTCGGATGTTCGCAT
1 CCA--TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
97489431 CCATAAGTGAAATCAGACTCAACTCAATGAGTTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
97489470 CCCAAATATC
Statistics
Matches: 105, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 65 0.62
47 35 0.33
48 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:97492094 original size:17 final size:17
Alignment explanation
Indices: 97492072--97492106 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97492062 ATTTGTGTGA
*
97492072 TTAAATCGTTTCAGACC
1 TTAAATCGTTTCAAACC
*
97492089 TTAAATTGTTTCAAACC
1 TTAAATCGTTTCAAACC
97492106 T
1 T
97492107 AACACGTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (17 bp):
TTAAATCGTTTCAAACC
Found at i:97494536 original size:7 final size:7
Alignment explanation
Indices: 97494516--97494609 Score: 170
Period size: 7 Copynumber: 13.3 Consensus size: 7
97494506 TGGTGGAGGC
97494516 TTTAGGG
1 TTTAGGG
97494523 TTTTAGGG
1 -TTTAGGG
97494531 TTTAGGG
1 TTTAGGG
97494538 TTTAGGG
1 TTTAGGG
97494545 TTTAGGG
1 TTTAGGG
97494552 TTTAGGG
1 TTTAGGG
97494559 TTTAGGG
1 TTTAGGG
*
97494566 TTTATGG
1 TTTAGGG
97494573 TTTAGGG
1 TTTAGGG
97494580 TTTAGGG
1 TTTAGGG
97494587 TTTAGGG
1 TTTAGGG
97494594 TTTAGGG
1 TTTAGGG
97494601 TTTAGGG
1 TTTAGGG
97494608 TT
1 TT
97494610 ACACATCAAT
Statistics
Matches: 84, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
7 77 0.92
8 7 0.08
ACGTcount: A:0.14, C:0.00, G:0.40, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:97511354 original size:24 final size:24
Alignment explanation
Indices: 97511309--97511354 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
97511299 AACTTAAATT
* *
97511309 TTTATTTTCTTTTTTAATTTTTCA
1 TTTATTTTCTTTTATAAGTTTTCA
97511333 TTTATTTTCTTTTGAT-AGTTTT
1 TTTATTTTCTTTT-ATAAGTTTT
97511355 TTTTTTCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.15, C:0.07, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTATTTTCTTTTATAAGTTTTCA
Found at i:97516112 original size:35 final size:35
Alignment explanation
Indices: 97516068--97516234 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
97516058 TCCTCATTGA
** *
97516068 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
97516103 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
97516143 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
97516178 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
97516213 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
97516235 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:97516151 original size:75 final size:73
Alignment explanation
Indices: 97516063--97516234 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
97516053 GGTTTTCCTC
** * * **
97516063 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
97516127 TCAGTATGG
65 TCAGTATGG
*
97516136 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
97516201 CTCAGTATGG
64 CTCAGTATGG
97516211 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
97516235 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:97518669 original size:11 final size:11
Alignment explanation
Indices: 97518653--97518679 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
97518643 ACTTCCCGAC
97518653 TAGGGTCAGAA
1 TAGGGTCAGAA
97518664 TAGGGTCAGAA
1 TAGGGTCAGAA
97518675 TAGGG
1 TAGGG
97518680 CTGTCACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.41, T:0.19
Consensus pattern (11 bp):
TAGGGTCAGAA
Found at i:97529820 original size:14 final size:14
Alignment explanation
Indices: 97529801--97529827 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97529791 ATTATAATGT
97529801 ATTTTAATTTAATA
1 ATTTTAATTTAATA
97529815 ATTTTAATTTAAT
1 ATTTTAATTTAAT
97529828 TATTACATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTTAATTTAATA
Found at i:97535765 original size:25 final size:27
Alignment explanation
Indices: 97535728--97535780 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97535718 TCAAACATGC
97535728 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
97535754 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
97535780 A
1 A
97535781 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:97537299 original size:31 final size:32
Alignment explanation
Indices: 97537261--97537324 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
97537251 AATGCTTACC
97537261 ATGCCCATCATCCATTAACTATTAAAA-GCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
97537292 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
97537324 A
1 A
97537325 AATGTACATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:97539682 original size:20 final size:20
Alignment explanation
Indices: 97539657--97539694 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97539647 GTTTATTCGC
*
97539657 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97539677 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97539695 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97541346 original size:28 final size:28
Alignment explanation
Indices: 97541314--97541382 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97541304 GCGTAGATCA
97541314 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97541342 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97541370 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97541383 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97547679 original size:20 final size:20
Alignment explanation
Indices: 97547654--97547691 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97547644 GTTTATTCGC
*
97547654 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97547674 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97547692 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97549359 original size:28 final size:28
Alignment explanation
Indices: 97549318--97549383 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
97549308 TAGAACACGA
* *
97549318 AATTA-CCCTTAAAGAGCAAAATTATCG
1 AATTACCCCTAAAAGAGCAAAATTACCG
97549345 AATTACCCCTAAAAGAGCAAAATTACCG
1 AATTACCCCTAAAAGAGCAAAATTACCG
97549373 -ATATACCCCTA
1 AAT-TACCCCTA
97549384 GGGTTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 7 0.20
28 28 0.80
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.23
Consensus pattern (28 bp):
AATTACCCCTAAAAGAGCAAAATTACCG
Found at i:97560715 original size:25 final size:25
Alignment explanation
Indices: 97560686--97560733 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97560676 TTATAATATG
* * *
97560686 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
97560711 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
97560734 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:97560802 original size:20 final size:20
Alignment explanation
Indices: 97560777--97560835 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
97560767 TAAATATGGT
97560777 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
97560797 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
97560817 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
97560836 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:97560916 original size:23 final size:24
Alignment explanation
Indices: 97560886--97560980 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
97560876 GAGGAAGTGA
97560886 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
97560909 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97560933 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
97560957 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97560981 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:97560954 original size:47 final size:49
Alignment explanation
Indices: 97560887--97560980 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
97560877 AGGAAGTGAA
*
97560887 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
97560934 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
97560981 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:97561252 original size:31 final size:31
Alignment explanation
Indices: 97561195--97561309 Score: 133
Period size: 38 Copynumber: 3.5 Consensus size: 31
97561185 AGTATTATGA
97561195 AATATGAAACATGAAAAGG-TTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
97561225 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
97561261 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
97561294 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
97561310 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
30 18 0.25
31 24 0.33
33 1 0.01
36 1 0.01
38 29 0.40
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:97561263 original size:68 final size:68
Alignment explanation
Indices: 97561172--97561309 Score: 251
Period size: 68 Copynumber: 2.0 Consensus size: 68
97561162 CGTTTACAGT
97561172 AAAGGCTTCGGCCAGTATTATGAAATATGAAACATGAAAAGG-TTCGGCCCAGTAATATGAAATA
1 AAAGGCTTCGGCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAATA
97561236 TGA
66 TGA
*
97561239 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGG-CCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
97561304 ATGA
65 ATGA
97561308 AA
1 AA
97561310 TACGAAAAGG
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 11 0.16
68 31 0.46
69 26 0.38
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (68 bp):
AAAGGCTTCGGCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAATA
TGA
Found at i:97561277 original size:38 final size:38
Alignment explanation
Indices: 97561225--97561332 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
97561215 TCGGCCCAGT
97561225 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
97561263 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
97561301 AATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
97561333 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:97569071 original size:25 final size:25
Alignment explanation
Indices: 97569042--97569089 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97569032 TTATAATATG
* * *
97569042 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
97569067 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
97569090 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:97569158 original size:20 final size:20
Alignment explanation
Indices: 97569133--97569191 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
97569123 TAAATATGGT
97569133 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
97569153 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
97569173 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
97569192 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:97569272 original size:23 final size:24
Alignment explanation
Indices: 97569242--97569336 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
97569232 GAGGAAGTGA
97569242 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
97569265 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
97569289 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
97569313 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
97569337 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:97569310 original size:47 final size:49
Alignment explanation
Indices: 97569243--97569336 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
97569233 AGGAAGTGAA
*
97569243 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
97569290 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
97569337 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:97569581 original size:38 final size:38
Alignment explanation
Indices: 97569528--97569690 Score: 223
Period size: 38 Copynumber: 4.4 Consensus size: 38
97569518 CGTTTACAGT
97569528 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
97569566 ATAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
97569597 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
97569635 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
97569673 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
97569691 GCATGATTGA
Statistics
Matches: 110, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
31 28 0.25
33 1 0.01
36 1 0.01
38 67 0.61
39 13 0.12
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:97569590 original size:31 final size:31
Alignment explanation
Indices: 97569552--97569667 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 31
97569542 AGTATTATGA
*
97569552 AATATGAAACATGAATAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
97569583 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
97569619 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
97569652 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
97569668 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 5, Indels: 14
0.79 0.05 0.15
Matches are distributed among these distances:
31 42 0.58
33 1 0.01
36 1 0.01
38 29 0.40
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:97569609 original size:69 final size:69
Alignment explanation
Indices: 97569528--97569667 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
97569518 CGTTTACAGT
*
97569528 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAATAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
97569593 ATGA
66 ATGA
*
97569597 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
97569662 ATGA
66 ATGA
97569666 AA
1 AA
97569668 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:97572003 original size:93 final size:93
Alignment explanation
Indices: 97571844--97572030 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
97571834 TTTTAAATAC
*
97571844 TGTCAAAGTTTTGAAAACTTACCATTGATGTTCTTGAAGCTTTTTAGATGTTAATGTTTGAGCTT
1 TGTCAAAGTTTTGAAAACTTACCATTGATGTTCTTGAAACTTTTTAGATGTTAATGTTTGAGCTT
97571909 GAAGCTTGATAATGAAATATGACTATTT
66 GAAGCTTGATAATGAAATATGACTATTT
97571937 TGTCAAAGTTTTGAAAACTTACCATTGATGTTCTTGAAACTTTTTAGATGTTAATGTTTGAGCTT
1 TGTCAAAGTTTTGAAAACTTACCATTGATGTTCTTGAAACTTTTTAGATGTTAATGTTTGAGCTT
97572002 GAAGCTTGATAATGAAATATGACTATTT
66 GAAGCTTGATAATGAAATATGACTATTT
97572030 T
1 T
97572031 ATAAAGTGAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (93 bp):
TGTCAAAGTTTTGAAAACTTACCATTGATGTTCTTGAAACTTTTTAGATGTTAATGTTTGAGCTT
GAAGCTTGATAATGAAATATGACTATTT
Found at i:97574329 original size:24 final size:24
Alignment explanation
Indices: 97574284--97574330 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
97574274 TGTATTTAAT
* **
97574284 TTTGCATTTATATTTTTTAATTTG
1 TTTGCATTAATATTTTAAAATTTG
*
97574308 TTTGTATTAATATTTTAAAATTT
1 TTTGCATTAATATTTTAAAATTT
97574331 TATCTTTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (24 bp):
TTTGCATTAATATTTTAAAATTTG
Found at i:97574943 original size:186 final size:184
Alignment explanation
Indices: 97574611--97574976 Score: 662
Period size: 186 Copynumber: 2.0 Consensus size: 184
97574601 ATGATGATAA
*
97574611 TAATAATATAACTAAATTACAACAATAATTATAGATAATATTTAATTTTTTTTACGAATCAATTA
1 TAATAATATAACTAAATAACAACAATAATTATAGATAATATTTAATTTTTTTTACGAATCAATTA
*
97574676 TTTACACTATTAAAATTAATACCATATTTAAATTGCATGGAATGCGTTATTCATTATATTAAATT
66 TTTACACAATTAAAATTAATACCATATTTAAATTGCATGGAATGCGTTATTCATTATATTAAATT
97574741 TTTTATTGTAATTTTTTGAGGATAAATTTTTTATTTTCTAAATCATTATCTAATT
131 TTTTATTGTAATTTTTTGAGGATAAA-TTTTTATTTTCTAAATCATTATCTAATT
97574796 TAATAATAATAA-TAATATAACAACAATAATTATAGATAATATTTAATTTTTTTTACGAATCAAT
1 TAATAAT-ATAACTAA-ATAACAACAATAATTATAGATAATATTTAATTTTTTTTACGAATCAAT
*
97574860 TATTTACGCAATTAAAATTAATACCATATTTAAATTGCATGGAATGCGTTATTCATTATATTAAA
64 TATTTACACAATTAAAATTAATACCATATTTAAATTGCATGGAATGCGTTATTCATTATATTAAA
*
97574925 TTTTTTATTTTAATTTTTTGAGGATAAATTTTTATTTTCTAAATCATTATCT
129 TTTTTTATTGTAATTTTTTGAGGATAAATTTTTATTTTCTAAATCATTATCT
97574977 TGATAAAATA
Statistics
Matches: 175, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
185 34 0.19
186 141 0.81
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (184 bp):
TAATAATATAACTAAATAACAACAATAATTATAGATAATATTTAATTTTTTTTACGAATCAATTA
TTTACACAATTAAAATTAATACCATATTTAAATTGCATGGAATGCGTTATTCATTATATTAAATT
TTTTATTGTAATTTTTTGAGGATAAATTTTTATTTTCTAAATCATTATCTAATT
Found at i:97576093 original size:20 final size:20
Alignment explanation
Indices: 97576051--97576102 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
97576041 TTTAGAATTT
*
97576051 AAATATACTATTTAAATTGAA
1 AAATATA-TATTTAAAATGAA
97576072 AAATATATATTTAAAAAT-AA
1 AAATATATATTT-AAAATGAA
97576092 AAATA-ATATTT
1 AAATATATATTT
97576103 GAATGATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 6 0.21
20 12 0.41
21 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AAATATATATTTAAAATGAA
Found at i:97581453 original size:93 final size:93
Alignment explanation
Indices: 97581306--97581479 Score: 296
Period size: 93 Copynumber: 1.9 Consensus size: 93
97581296 GCTTCTTGTG
** * *
97581306 TGAATGTTGATGATGAGAAGACTCCTGTTGCATCTCCAACAGGTTCATCTGCTGAAAGGAAGTTA
1 TGAATGTTGATGATGAGAAGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTTA
97581371 ACTCCTGTAGCTGGTGGTTCATCATGTA
66 ACTCCTGTAGCTGGTGGTTCATCATGTA
97581399 TGAATGTTGATGATG-GAATGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTT
1 TGAATGTTGATGATGAGAA-GAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTT
97581463 AACTCCTGTAGCTGGTG
65 AACTCCTGTAGCTGGTG
97581480 AGGTTTTGTC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 3 0.04
93 73 0.96
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (93 bp):
TGAATGTTGATGATGAGAAGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTTA
ACTCCTGTAGCTGGTGGTTCATCATGTA
Found at i:97586171 original size:11 final size:11
Alignment explanation
Indices: 97586152--97586195 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
97586142 ACCCCCCCTC
97586152 AAAAA-AAAAA
1 AAAAAGAAAAA
97586162 AAAAAGAAAAA
1 AAAAAGAAAAA
*
97586173 AAAAAG-AGAA
1 AAAAAGAAAAA
*
97586183 AAAATGAAAAA
1 AAAAAGAAAAA
97586194 AA
1 AA
97586196 GAAAAGGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:97592755 original size:17 final size:18
Alignment explanation
Indices: 97592733--97592771 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
97592723 ATAATTAAGT
97592733 AAATT-AATATAAAA-TAA
1 AAATTAAAT-TAAAATTAA
97592750 AAATTAAATTAAAATTAA
1 AAATTAAATTAAAATTAA
97592768 AAAT
1 AAAT
97592772 ATTATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATTAAATTAAAATTAA
Found at i:97598051 original size:57 final size:58
Alignment explanation
Indices: 97597984--97598097 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 58
97597974 ACTACAATGG
* *
97597984 GTTAACTTTTTTTTTCAACATCGC-ATGCTTGTCCTGATAGTTGATATGAAAAGGAAAT
1 GTTAACTTTTTTTTTCAACATC-CAATGCTTGTCCTGATAGTTGATACGAAAAAGAAAT
97598042 GTTAA-TTTTTTTTTCAACATCCAATGCTTGTCCTGATAGTTGATACGAAAAAGAAA
1 GTTAACTTTTTTTTTCAACATCCAATGCTTGTCCTGATAGTTGATACGAAAAAGAAA
97598098 ATGCTTGAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
56 1 0.02
57 47 0.89
58 5 0.09
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (58 bp):
GTTAACTTTTTTTTTCAACATCCAATGCTTGTCCTGATAGTTGATACGAAAAAGAAAT
Found at i:97600905 original size:2 final size:2
Alignment explanation
Indices: 97600898--97600932 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
97600888 GAGCACACTG
97600898 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97600933 GTTCCTGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:97604399 original size:28 final size:28
Alignment explanation
Indices: 97604359--97604428 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
97604349 ATAGTAAGTC
*
97604359 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
97604387 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
97604415 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97604429 CAATCTCATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:97604972 original size:101 final size:105
Alignment explanation
Indices: 97604813--97605110 Score: 487
Period size: 101 Copynumber: 2.8 Consensus size: 105
97604803 CTTCTTAAAC
* *
97604813 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97604878 TTAATCCATGCATATTGGTCGGCTACTTTCATC-T-TT-T
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
* * *
97604915 ATAATATATGAACATATATT-AAGTATACCATAATGCCGTCAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97604979 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTTATTAAAT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATC--TTATT--AT
97605023 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97605088 TTAATCCATGCATATTGGTCGGC
66 TTAATCCATGCATATTGGTCGGC
97605111 CGTTAATTCC
Statistics
Matches: 180, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
101 73 0.41
102 19 0.11
104 1 0.01
105 2 0.01
108 20 0.11
109 65 0.36
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (105 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
Found at i:97605073 original size:109 final size:107
Alignment explanation
Indices: 97604792--97605110 Score: 497
Period size: 109 Copynumber: 3.0 Consensus size: 107
97604782 GAAAGATGAA
* *
97604792 TACTTTCCTCTCTTCTTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATCT-TT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
* *
97604857 TATAATAAACAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
* * *
97604901 TACTTTCATC--TTT---TATAATATATGAACATATATT-AAGTATACCATAATGCCGTCAAACA
1 TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
97604960 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
66 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
97605002 TACTTTCATCTTTTATTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATC-TTT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
97605067 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
97605111 CGTTAATTCC
Statistics
Matches: 192, Mismatches: 10, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
101 73 0.38
102 19 0.10
104 1 0.01
105 4 0.02
106 1 0.01
108 20 0.10
109 74 0.39
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (107 bp):
TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
Found at i:97608878 original size:28 final size:28
Alignment explanation
Indices: 97608838--97608907 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
97608828 ATAGTAAGTC
* *
97608838 CGCAAACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
97608866 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
97608894 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97608908 CAATCTCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:97609470 original size:101 final size:105
Alignment explanation
Indices: 97609294--97609591 Score: 496
Period size: 101 Copynumber: 2.8 Consensus size: 105
97609284 CTTCTTAGAC
* *
97609294 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97609359 TTAATCCATGCATATTGGTCGGCTACTTTCATC-TT-T-T
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTATAT
*
97609396 ATAATATATTAACATATATT-AAGTATACCATAATGCCGTAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97609460 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTTACTAAAT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATC-TTTA-T--AT
*
97609504 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTTA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
97609569 TTAATCCATGCATATTGGTCGGC
66 TTAATCCATGCATATTGGTCGGC
97609592 CGTTAATTCC
Statistics
Matches: 183, Mismatches: 5, Indels: 9
0.93 0.03 0.05
Matches are distributed among these distances:
101 74 0.40
102 20 0.11
103 2 0.01
105 1 0.01
108 21 0.11
109 65 0.36
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.35
Consensus pattern (105 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTATAT
Found at i:97615672 original size:51 final size:52
Alignment explanation
Indices: 97615617--97615719 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 52
97615607 ACAAATTGAC
*
97615617 AATGGGTTAGGTAAATGTTCCATGAT-ATGGGCTAGGTAAATGTTTCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATGGGCTAGGTAAATGTTCCATGAT
*
97615668 AATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATGGGCTAGGTAAATGTTCCATGAT
97615720 GGGCATTTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 26 0.53
52 23 0.47
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (52 bp):
AATGGGTTAGGTAAATGTTCCATGATAATGGGCTAGGTAAATGTTCCATGAT
Found at i:97615679 original size:26 final size:26
Alignment explanation
Indices: 97615617--97615719 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
97615607 ACAAATTGAC
97615617 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
* *
97615643 -ATGGGCTAGGTAAATGTTTCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
97615668 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
97615694 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGAT
97615720 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 23 0.32
26 49 0.68
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
AATGGGTTAGGTAAATGTTCCATGAT
Found at i:97617627 original size:32 final size:34
Alignment explanation
Indices: 97617567--97617629 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
97617557 CTATAAGCCA
*
97617567 TATTGTTATCTGAATAAGGGGCTAAGGCCCAGTT
1 TATTGTAATCTGAATAAGGGGCTAAGGCCCAGTT
*
97617601 TATTGTAATCTGAA-AA-GGGCTTAGGCCCA
1 TATTGTAATCTGAATAAGGGGCTAAGGCCCA
97617630 ATGGGCTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 12 0.44
33 2 0.07
34 13 0.48
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (34 bp):
TATTGTAATCTGAATAAGGGGCTAAGGCCCAGTT
Found at i:97627865 original size:26 final size:26
Alignment explanation
Indices: 97627836--97627945 Score: 186
Period size: 26 Copynumber: 4.2 Consensus size: 26
97627826 TGATACAAAT
97627836 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
97627862 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATGGGTTAGGTAAATGTTTC-A
97627888 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
97627914 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97627940 TGATAA
1 TGATAA
97627946 GAATATCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 72 0.92
27 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:97629969 original size:136 final size:136
Alignment explanation
Indices: 97629724--97630145 Score: 781
Period size: 136 Copynumber: 3.1 Consensus size: 136
97629714 GAGTAGTCTC
*
97629724 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
97629789 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
97629854 ACTGTTA
130 ACTGTTA
97629861 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
97629926 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
97629991 CTGTTA
131 CTGTTA
*
97629997 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
97630062 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
97630127 CTGTTA
131 CTGTTA
**
97630133 CCTGAATGGGCTT
1 CCCAAATGGGCTT
97630146 AGGCCCAATA
Statistics
Matches: 279, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 259 0.93
137 20 0.07
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:97633967 original size:26 final size:26
Alignment explanation
Indices: 97633928--97634035 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
97633918 TGATACAAAT
97633928 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
97633953 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97633978 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97634004 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
97634030 TGATAA
1 TGATAA
97634036 GAATATCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 31 0.39
26 49 0.61
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:97633994 original size:51 final size:51
Alignment explanation
Indices: 97633928--97634035 Score: 191
Period size: 51 Copynumber: 2.1 Consensus size: 51
97633918 TGATACAAAT
97633928 TGATAATGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTTCA
*
97633978 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTTCA
97634030 TGATAA
1 TGATAA
97634036 GAATATCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
50 7 0.13
51 38 0.69
52 10 0.18
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (51 bp):
TGATAATGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTTCA
Found at i:97636060 original size:136 final size:136
Alignment explanation
Indices: 97635815--97636236 Score: 781
Period size: 136 Copynumber: 3.1 Consensus size: 136
97635805 GAGTAGTCTC
*
97635815 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
97635880 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
97635945 ACTGTTA
130 ACTGTTA
97635952 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
97636017 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
97636082 CTGTTA
131 CTGTTA
*
97636088 CCCAAATGGGCTTGCACATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
97636153 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
97636218 CTGTTA
131 CTGTTA
**
97636224 CCTGAATGGGCTT
1 CCCAAATGGGCTT
97636237 AGGCCCAATA
Statistics
Matches: 279, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 259 0.93
137 20 0.07
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:97650359 original size:43 final size:42
Alignment explanation
Indices: 97650297--97650386 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 42
97650287 CTGAACTCAT
*
97650297 TCACCGGCATTACGCCTGCTAGGCTCAAAGCCCGATATTAAC
1 TCACCGGCATTAAGCCTGCTAGGCTCAAAGCCCGATATTAAC
* * *
97650339 TCACTGGCATTATAGCCTGCTATGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTA-AGCCTGCTAGGCTCAAAGCCCGATATTAAC
97650382 TCACC
1 TCACC
97650387 AAGTTCCATA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 11 0.26
43 31 0.74
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (42 bp):
TCACCGGCATTAAGCCTGCTAGGCTCAAAGCCCGATATTAAC
Found at i:97653234 original size:24 final size:24
Alignment explanation
Indices: 97653202--97653247 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
97653192 TAGAAAATTA
97653202 ACGAGTGGATGTGTGAGTAGTTTG
1 ACGAGTGGATGTGTGAGTAGTTTG
97653226 ACGAGTGGATGTGTGAGTAGTT
1 ACGAGTGGATGTGTGAGTAGTT
97653248 ATAAATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.04, G:0.41, T:0.33
Consensus pattern (24 bp):
ACGAGTGGATGTGTGAGTAGTTTG
Found at i:97656542 original size:17 final size:19
Alignment explanation
Indices: 97656515--97656550 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
97656505 AAAGCCAATT
97656515 TGGACCGTGTGGGC-CACA
1 TGGACCGTGTGGGCTCACA
97656533 TGGA-CGTGTGGGCTCACA
1 TGGACCGTGTGGGCTCACA
97656551 CGGTCAGACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.25, G:0.39, T:0.19
Consensus pattern (19 bp):
TGGACCGTGTGGGCTCACA
Found at i:97661464 original size:4 final size:4
Alignment explanation
Indices: 97661455--97661488 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
97661445 AACTTGAGCC
*
97661455 TTTA TTTA TTTA TTCA TTTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T
97661489 GTACAAGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 24 0.89
5 3 0.11
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:97664380 original size:21 final size:22
Alignment explanation
Indices: 97664354--97664394 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
97664344 CTAATTTAAC
*
97664354 ATAAAATTAAAT-AATAAATAA
1 ATAAAATAAAATAAATAAATAA
97664375 ATAAAATAAAATAAATAAAT
1 ATAAAATAAAATAAATAAAT
97664395 TTTTTTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (22 bp):
ATAAAATAAAATAAATAAATAA
Found at i:97665906 original size:16 final size:17
Alignment explanation
Indices: 97665885--97665918 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
97665875 TTCTAAATTT
97665885 ATAAAAATATA-TAAAA
1 ATAAAAATATATTAAAA
97665901 ATAAAAATATATTAAAA
1 ATAAAAATATATTAAAA
97665918 A
1 A
97665919 ACTATAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAAATATATTAAAA
Found at i:97666179 original size:17 final size:16
Alignment explanation
Indices: 97666157--97666200 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
97666147 GTAAATTTTT
*
97666157 TTTATATTTTTTACCAA
1 TTTATATTTTTTA-AAA
*
97666174 TTTATATATTTTAAAA
1 TTTATATTTTTTAAAA
*
97666190 TTTAAATTTTT
1 TTTATATTTTT
97666201 ATATATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATATTTTTTAAAA
Found at i:97669605 original size:18 final size:19
Alignment explanation
Indices: 97669582--97669619 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
97669572 GCCTTTATGG
*
97669582 TTGTTATAAATAA-AAAAA
1 TTGTTATAAAAAATAAAAA
97669600 TTGTTATAAAAAATAAAAA
1 TTGTTATAAAAAATAAAAA
97669619 T
1 T
97669620 AAAATGTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
TTGTTATAAAAAATAAAAA
Found at i:97674039 original size:37 final size:37
Alignment explanation
Indices: 97673997--97674073 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
97673987 AAAAGTGGAA
*
97673997 GATGAAGAGGAAGGAATTGAGGAGAAGCATAGTAGAG
1 GATGAAGAGGAAGGAATTGAGGAGAAGCATAATAGAG
97674034 GATGAAGAGGAAGGAATTGAGGAGAAGCATAATAGAG
1 GATGAAGAGGAAGGAATTGAGGAGAAGCATAATAGAG
97674071 GAT
1 GAT
97674074 TGGCTGTGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.44, C:0.03, G:0.39, T:0.14
Consensus pattern (37 bp):
GATGAAGAGGAAGGAATTGAGGAGAAGCATAATAGAG
Found at i:97675127 original size:28 final size:28
Alignment explanation
Indices: 97675095--97675205 Score: 188
Period size: 28 Copynumber: 4.0 Consensus size: 28
97675085 TCCAATTGGG
97675095 AAATGTTTTGTCTTGGGCATCAGAGCGA
1 AAATGTTTTGTCTTGGGCATCAGAGCGA
97675123 AAATGTTTTGTCTTGGGCATC-GAAGCGA
1 AAATGTTTTGTCTTGGGCATCAG-AGCGA
**
97675151 AAATGTTTTGTCTTGGGCATTGGAGCGA
1 AAATGTTTTGTCTTGGGCATCAGAGCGA
97675179 AAATGTTTTGTCTTGGGCATCAGAGCG
1 AAATGTTTTGTCTTGGGCATCAGAGCG
97675206 GATGGCTTTT
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
27 1 0.01
28 76 0.97
29 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (28 bp):
AAATGTTTTGTCTTGGGCATCAGAGCGA
Done.