Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 326 of 345
Found at i:97676335 original size:26 final size:26
Alignment explanation
Indices: 97676299--97676382 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
97676289 TGGTACAAAT
*
97676299 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
97676325 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
97676351 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
97676377 TGATAA
1 TGATAA
97676383 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:97679147 original size:22 final size:22
Alignment explanation
Indices: 97679122--97679165 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
97679112 ACGAAATTAG
*
97679122 AATTAGATTGAGAAGTTTATTT
1 AATTAGATTGAGAAGATTATTT
* *
97679144 AATTGGGTTGAGAAGATTATTT
1 AATTAGATTGAGAAGATTATTT
97679166 TACGATTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (22 bp):
AATTAGATTGAGAAGATTATTT
Found at i:97685700 original size:30 final size:29
Alignment explanation
Indices: 97685655--97685748 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 29
97685645 AATTTTTAAT
*
97685655 TTTTTTAAATTTTAAAAAATTATAAAAATTA
1 TTTTTTAAA-ATTAAAAAATTATAAAAA-TA
* *
97685686 TTTTTTAAAATT-AAAAATCATTAAAAT-
1 TTTTTTAAAATTAAAAAATTATAAAAATA
* **
97685713 TTTTTAAAAAGGAATAAAAATTATAAAAATA
1 TTTTTTAAAA-TTA-AAAAATTATAAAAATA
97685744 TTTTT
1 TTTTT
97685749 AATATTTTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 9 0.18
28 1 0.02
29 12 0.24
30 15 0.29
31 14 0.27
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (29 bp):
TTTTTTAAAATTAAAAAATTATAAAAATA
Found at i:97688297 original size:40 final size:40
Alignment explanation
Indices: 97688246--97688333 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
97688236 TTAAAAATAT
*
97688246 TTATATTAAAAAATAC-C--ATAAATATAATAAATATTTTA
1 TTATATTAAAAAA-ACACAAATAAATATAATAAATACTTTA
97688284 TTATATTAAAAAAACACAAATAAATATAATAAATACTTTA
1 TTATATTAAAAAAACACAAATAAATATAATAAATACTTTA
*
97688324 TTTTATTAAA
1 TTATATTAAA
97688334 TTTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
37 2 0.04
38 14 0.31
40 29 0.64
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (40 bp):
TTATATTAAAAAAACACAAATAAATATAATAAATACTTTA
Found at i:97689175 original size:86 final size:89
Alignment explanation
Indices: 97689016--97689186 Score: 217
Period size: 86 Copynumber: 2.0 Consensus size: 89
97689006 GTAAAAATCT
* *
97689016 CTTAAACTTTAAAAAATAATAATAGTAATTAAGTCCCTTTTTTTTCACTCAATTAAATATTTAAA
1 CTTAAACTTTAAAAAATAATAAAAGTAATTAAGTCCCTTTTTTTTCACTCAATTAAATACTTAAA
** *
97689081 CTTTCAAAATGTATTAAAAAGGCC
66 CTACCAAAATGTATCAAAAAGGCC
* * *
97689105 CTTAAA-TTTAAAAAA-AA-AAAAGTAA-TAAG-CCCTTATTTTTTTCACTCAATTTAGTACTTG
1 CTTAAACTTTAAAAAATAATAAAAGTAATTAAGTCCC-T-TTTTTTTCACTCAATTAAATACTTA
97689165 AACTACCAAAATGTATCAAAAA
64 AACTACCAAAATGTATCAAAAA
97689187 TACCCTAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
84 3 0.04
85 5 0.07
86 47 0.65
87 2 0.03
88 9 0.12
89 6 0.08
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (89 bp):
CTTAAACTTTAAAAAATAATAAAAGTAATTAAGTCCCTTTTTTTTCACTCAATTAAATACTTAAA
CTACCAAAATGTATCAAAAAGGCC
Found at i:97689365 original size:9 final size:9
Alignment explanation
Indices: 97689364--97689506 Score: 62
Period size: 9 Copynumber: 15.8 Consensus size: 9
97689354 AATGATAAAA
97689364 ATAAAAATT
1 ATAAAAATT
*
97689373 AATAAAAGTT
1 -ATAAAAATT
97689383 ATAAAAATT
1 ATAAAAATT
97689392 ATAAAAATT
1 ATAAAAATT
*
97689401 AT-TAAATT
1 ATAAAAATT
* *
97689409 TTAATAA-T
1 ATAAAAATT
97689417 A-AAAAA-T
1 ATAAAAATT
97689424 ATAAAAAATAT
1 AT-AAAAAT-T
* ****
97689435 TTATTTTTT
1 ATAAAAATT
97689444 ATTAAAAATT
1 A-TAAAAATT
* *
97689454 AGAAAATATC
1 ATAAAA-ATT
*
97689464 ATAAAAATC
1 ATAAAAATT
97689473 ATAAAAATT
1 ATAAAAATT
* *
97689482 ATATATATAT
1 ATAAAAAT-T
*
97689492 ATAGAAA-T
1 ATAAAAATT
97689500 ATAAAAA
1 ATAAAAA
97689507 AAATATAAAA
Statistics
Matches: 98, Mismatches: 27, Indels: 18
0.69 0.19 0.13
Matches are distributed among these distances:
7 6 0.06
8 14 0.14
9 48 0.49
10 28 0.29
11 2 0.02
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (9 bp):
ATAAAAATT
Found at i:97689388 original size:19 final size:18
Alignment explanation
Indices: 97689364--97689506 Score: 62
Period size: 19 Copynumber: 7.9 Consensus size: 18
97689354 AATGATAAAA
*
97689364 ATAAAAATTAATAAAAGTT
1 ATAAAAATT-ATAAAAATT
97689383 ATAAAAATTATAAAAATT
1 ATAAAAATTATAAAAATT
* * *
97689401 AT-TAAATTTTAATAA-T
1 ATAAAAATTATAAAAATT
97689417 A-AAAAA-TATAAAAAATAT
1 ATAAAAATTAT-AAAAAT-T
* ****
97689435 TTATTTTTTATTAAAAATT
1 ATAAAAATTA-TAAAAATT
* * *
97689454 AGAAAATATCATAAAAATC
1 ATAAAA-ATTATAAAAATT
* *
97689473 ATAAAAATTATATATATAT
1 ATAAAAATTATAAAAAT-T
*
97689492 ATAGAAA-TATAAAAA
1 ATAAAAATTATAAAAA
97689507 AAATATAAAA
Statistics
Matches: 87, Mismatches: 28, Indels: 19
0.65 0.21 0.14
Matches are distributed among these distances:
15 2 0.02
16 9 0.10
17 10 0.11
18 25 0.29
19 30 0.34
20 10 0.11
21 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAAAAATTATAAAAATT
Found at i:97689499 original size:28 final size:27
Alignment explanation
Indices: 97689446--97689506 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
97689436 TATTTTTTAT
97689446 TAAAAATTAGAAAATATCATAAAAATCA
1 TAAAAATTAGAAAATATCATAAAAAT-A
* * *
97689474 TAAAAATTATATATATAT-ATAGAAATA
1 TAAAAATTAGA-AAATATCATAAAAATA
97689501 TAAAAA
1 TAAAAA
97689507 AAATATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 7 0.24
28 17 0.59
29 5 0.17
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (27 bp):
TAAAAATTAGAAAATATCATAAAAATA
Found at i:97689512 original size:27 final size:29
Alignment explanation
Indices: 97689459--97689513 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 29
97689449 AAATTAGAAA
**
97689459 ATATCATAAAAATCATAAAAATTATATAT
1 ATATCATAAAAATCATAAAAAAAATATAT
*
97689488 ATAT-ATAGAAAT-ATAAAAAAAATATA
1 ATATCATAAAAATCATAAAAAAAATATA
97689514 AAATTTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 12 0.52
28 7 0.30
29 4 0.17
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (29 bp):
ATATCATAAAAATCATAAAAAAAATATAT
Found at i:97689795 original size:10 final size:10
Alignment explanation
Indices: 97689776--97689886 Score: 54
Period size: 10 Copynumber: 11.5 Consensus size: 10
97689766 TTTTATGCAC
97689776 TTTATAATTT
1 TTTATAATTT
*
97689786 TTTATGA-TT
1 TTTATAATTT
**
97689795 TTTATAAAAT
1 TTTATAATTT
* *
97689805 TTTACAAATT
1 TTTATAATTT
*
97689815 TTTATATTTT
1 TTTATAATTT
**
97689825 TTTACGA-TT
1 TTTATAATTT
97689834 TTTAT-ATTT
1 TTTATAATTT
*
97689843 TTCA-AA-TT
1 TTTATAATTT
*
97689851 TTTAGTAA-AT
1 TTTA-TAATTT
*
97689861 TTTAAATATTT
1 TTTATA-ATTT
*
97689872 TTTATATTTT
1 TTTATAATTT
97689882 TTTAT
1 TTTAT
97689887 TAAAGTTCAA
Statistics
Matches: 75, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
8 6 0.08
9 21 0.28
10 42 0.56
11 6 0.08
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:97689798 original size:19 final size:19
Alignment explanation
Indices: 97689776--97689885 Score: 80
Period size: 19 Copynumber: 5.7 Consensus size: 19
97689766 TTTTATGCAC
*
97689776 TTTATAATTTTTTATGATT
1 TTTATAATTTTTTAAGATT
** *
97689795 TTTATAAAATTTTACAAATT
1 TTTATAATTTTTTA-AGATT
* *
97689815 TTTATATTTTTTTACGATT
1 TTTATAATTTTTTAAGATT
*
97689834 TTTAT-ATTTTTCAA-ATT
1 TTTATAATTTTTTAAGATT
* * *
97689851 TTTAGTAAATTTTAAATATTT
1 TTTA-TAATTTTTTAAGA-TT
*
97689872 TTTATATTTTTTTA
1 TTTATAATTTTTTA
97689886 TTAAAGTTCA
Statistics
Matches: 69, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
17 7 0.10
18 7 0.10
19 27 0.39
20 22 0.32
21 6 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTATAATTTTTTAAGATT
Found at i:97689815 original size:20 final size:19
Alignment explanation
Indices: 97689792--97689873 Score: 64
Period size: 20 Copynumber: 4.3 Consensus size: 19
97689782 ATTTTTTATG
97689792 ATTTTTATAAAATTTTACAA
1 ATTTTTAT-AAATTTTACAA
** *
97689812 ATTTTTATATTTTTTTAC-G
1 ATTTTTATA-AATTTTACAA
*
97689831 ATTTTTAT--ATTTTTCAA
1 ATTTTTATAAATTTTACAA
97689848 ATTTTTAGTAAATTTTA-AA
1 ATTTTTA-TAAATTTTACAA
97689867 TATTTTT
1 -ATTTTT
97689874 TATATTTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
16 5 0.10
17 7 0.14
18 1 0.02
19 11 0.22
20 25 0.51
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTTATAAATTTTACAA
Found at i:97690324 original size:2 final size:2
Alignment explanation
Indices: 97690307--97690350 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
97690297 TCTAAAAATC
*
97690307 AT AT AT A- AT CT A- AT AT AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97690346 AT AT A
1 AT AT A
97690351 ACTAGAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
1 3 0.08
2 34 0.92
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97691517 original size:28 final size:28
Alignment explanation
Indices: 97691477--97691534 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
97691467 GTCTATTTAA
97691477 TTTCTTTGATAGTTGAATTATGATTAGT
1 TTTCTTTGATAGTTGAATTATGATTAGT
97691505 TTTCTTTGATAGTTGAATTATGATTAGT
1 TTTCTTTGATAGTTGAATTATGATTAGT
97691533 TT
1 TT
97691535 GGTGTATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.03, G:0.17, T:0.55
Consensus pattern (28 bp):
TTTCTTTGATAGTTGAATTATGATTAGT
Found at i:97691528 original size:14 final size:15
Alignment explanation
Indices: 97691486--97691533 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
97691476 ATTTCTTTGA
97691486 TAGTTGAATTATGAT
1 TAGTTGAATTATGAT
***
97691501 TAGTTTTCTT-TGA-
1 TAGTTGAATTATGAT
97691514 TAGTTGAATTATGAT
1 TAGTTGAATTATGAT
97691529 TAGTT
1 TAGTT
97691534 TGGTGTATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 7 0.28
14 6 0.24
15 12 0.48
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.52
Consensus pattern (15 bp):
TAGTTGAATTATGAT
Found at i:97698029 original size:16 final size:16
Alignment explanation
Indices: 97698008--97698042 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
97697998 ACAGAATCAA
97698008 ACTTACTTCTTTAAAT
1 ACTTACTTCTTTAAAT
* *
97698024 ACTTACTTTTTTAGAT
1 ACTTACTTCTTTAAAT
97698040 ACT
1 ACT
97698043 AAAGGTGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ACTTACTTCTTTAAAT
Found at i:97698711 original size:150 final size:148
Alignment explanation
Indices: 97698398--97698700 Score: 417
Period size: 150 Copynumber: 2.0 Consensus size: 148
97698388 GCGAAGAGTA
* * * ** *
97698398 GTGGCACAAGGTGGTTTTTGTAGTGGTGGTATGGTGGTTATAAGTGGCAAGTGGTGGTGCAAAAA
1 GTGGCACAATGTGGTTTTTATAGTGGTGGTATGGTAGTTATAAGCAGCAAGTGGTGGTACAAAAA
* * * * *
97698463 TAATAGAGGTGTAGGAGAAGTTATAGATGACAAACAACAAAAGGAAAATAAAGTAAAAAATAGTG
66 TAATAAAGGTGGAGGAGAAATGATAGATGACAAACAACAAAAAGAAAATAAAGTAAAAAATAGTG
*
97698528 AAAAACTTACAAGAGATG
131 AAAAACTTACAAGAGAGG
* *
97698546 GTGGCACAATGTGGTTTTTATAGTGGTGGGGTATGGTAGTTATCAGCAGTAAGTGGTGGTACAAA
1 GTGGCACAATGTGGTTTTTATAGTGGT--GGTATGGTAGTTATAAGCAGCAAGTGGTGGTACAAA
* * *
97698611 AATAATAAAGGTGGGGGAGAAATGATAGATGACAAACAACAAAAATAAAATAAAGTAAAAAGTAG
64 AATAATAAAGGTGGAGGAGAAATGATAGATGACAAACAACAAAAAGAAAATAAAGTAAAAAATAG
* *
97698676 TGAAAAGCTTCCAAGAGAGG
129 TGAAAAACTTACAAGAGAGG
97698696 GTGGC
1 GTGGC
97698701 TCACAGTGGT
Statistics
Matches: 134, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
148 25 0.19
150 109 0.81
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (148 bp):
GTGGCACAATGTGGTTTTTATAGTGGTGGTATGGTAGTTATAAGCAGCAAGTGGTGGTACAAAAA
TAATAAAGGTGGAGGAGAAATGATAGATGACAAACAACAAAAAGAAAATAAAGTAAAAAATAGTG
AAAAACTTACAAGAGAGG
Found at i:97700635 original size:21 final size:21
Alignment explanation
Indices: 97700592--97700808 Score: 145
Period size: 21 Copynumber: 10.4 Consensus size: 21
97700582 GTACATTGTT
* *
97700592 AACAGAAGCTCA-AA-AGCTG
1 AACAAAAGCTCATAAGAGCTA
*
97700611 AACAAAAGCTCATGAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * * * *
97700632 AACAAAAACCCATAAGTGTTG
1 AACAAAAGCTCATAAGAGCTA
* * * *
97700653 AACAGAATCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTA
* * *
97700674 AACAAAAACTCATATGAGTTA
1 AACAAAAGCTCATAAGAGCTA
*
97700695 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTA
* *
97700716 AACAGAAA-CTCATAAGAGTTT
1 AACA-AAAGCTCATAAGAGCTA
* * * *
97700737 AATAGAAGCTCAAAAGAGTTA
1 AACAAAAGCTCATAAGAGCTA
* *
97700758 AACAGAAA-CTCATATGAGTTA
1 AACA-AAAGCTCATAAGAGCTA
* *
97700779 AACAGAAGCTTATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
97700800 AACAGAAAG
1 AACA-AAAG
97700809 TAAAACATAA
Statistics
Matches: 151, Mismatches: 40, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
19 11 0.07
20 5 0.03
21 127 0.84
22 8 0.05
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:97700756 original size:63 final size:62
Alignment explanation
Indices: 97700592--97700808 Score: 204
Period size: 63 Copynumber: 3.5 Consensus size: 62
97700582 GTACATTGTT
* * * * *
97700592 AACAGAAGCTCA-AA-AGCTGAACAAAAGCTCATGAGAGCTAAACAAAAACCCATAAGTGTTG
1 AACAGAAACTCATAAGAGCTGAACAAAAGCTCATAAGAGTTAAAC-AAAACTCATAAGAGTTG
* * * * *
97700653 AACAGAATCTCGTAAGAGCTGAACAAAAACTCATATGAGTTAAACAAAAGCTCATAAGAGCTG
1 AACAGAAACTCATAAGAGCTGAACAAAAGCTCATAAGAGTTAAACAAAA-CTCATAAGAGTTG
* * * * * * *
97700716 AACAGAAACTCATAAGAGTTTAATAGAAGCTCAAAAGAGTTAAACAGAAACTCATATGAGTTA
1 AACAGAAACTCATAAGAGCTGAACAAAAGCTCATAAGAGTTAAACA-AAACTCATAAGAGTTG
* * *
97700779 AACAGAAGCTTATAAGAGCTAAACAGAAAG
1 AACAGAAACTCATAAGAGCTGAACA-AAAG
97700809 TAAAACATAA
Statistics
Matches: 124, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
61 10 0.08
62 6 0.05
63 102 0.82
64 6 0.05
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (62 bp):
AACAGAAACTCATAAGAGCTGAACAAAAGCTCATAAGAGTTAAACAAAACTCATAAGAGTTG
Found at i:97700767 original size:84 final size:84
Alignment explanation
Indices: 97700611--97700807 Score: 259
Period size: 84 Copynumber: 2.3 Consensus size: 84
97700601 TCAAAAGCTG
* * * * ** *
97700611 AACAAAAGCTCATGAGAGCTAAACAAAAACCCATAAGTGTTGAACAGAATCTCGTAAGAGCTGAA
1 AACAAAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTAAA
97700676 CAAAAACTCATATGAGTTA
66 CAAAAACTCATATGAGTTA
* * * * *
97700695 AACAAAAGCTCATAAGAGCTGAACAGAAACTCATAAGAGTTTAATAGAAGCTCAAAAGAGTTAAA
1 AACAAAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTAAA
*
97700760 CAGAAACTCATATGAGTTA
66 CAAAAACTCATATGAGTTA
* *
97700779 AACAGAAGCTTATAAGAGCTAAACAGAAA
1 AACAAAAGCTCATAAGAGCTAAACAGAAA
97700808 GTAAAACATA
Statistics
Matches: 97, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 97 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (84 bp):
AACAAAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTAAA
CAAAAACTCATATGAGTTA
Found at i:97700804 original size:42 final size:42
Alignment explanation
Indices: 97700611--97700807 Score: 223
Period size: 42 Copynumber: 4.7 Consensus size: 42
97700601 TCAAAAGCTG
* * * * * *
97700611 AACAAAAGCTCATGAGAGCTAAACAAAAACCCATAAGTGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
* * * * *
97700653 AACAGAATCTCGTAAGAGCTGAACAAAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
* * *
97700695 AACAAAAGCTCATAAGAGCTGAACAGAAACTCATAAGAGTTT
1 AACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
* * * *
97700737 AATAGAAGCTCAAAAGAGTTAAACAGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
*
97700779 AACAGAAGCTTATAAGAGCTAAACAGAAA
1 AACAGAAGCTCATAAGAGCTAAACAGAAA
97700808 GTAAAACATA
Statistics
Matches: 129, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 129 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACTCATAAGAGTTA
Found at i:97707124 original size:25 final size:25
Alignment explanation
Indices: 97707075--97707123 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
97707065 ATATATTAGT
*
97707075 TAAATGATAAAATAAATAAGTAAAA
1 TAAATGATAAAATAAATAAATAAAA
97707100 TAAATGA-AATAATAAA-AAATAAAA
1 TAAATGATAA-AATAAATAAATAAAA
97707124 AGAAAGACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (25 bp):
TAAATGATAAAATAAATAAATAAAA
Found at i:97710094 original size:27 final size:27
Alignment explanation
Indices: 97710063--97710235 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
97710053 CCCTAAAATA
* * *
97710063 GGTAAAATAACTGTAATACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
97710090 GGTAAATTGGCCGTAATGCCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTATAG
*
97710117 GGTAAAATGATCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
97710144 GGTAAAATGACCGTAATGCCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
97710171 GGTAAAATAATCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * *
97710198 GGTAAGATGACCGTAATACCCCTATAT
1 GGTAAAATGACCGTAATGCCCCTATAG
*
97710225 GTTAAAATGAC
1 GGTAAAATGAC
97710236 GATTATGCCC
Statistics
Matches: 118, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:97710133 original size:54 final size:53
Alignment explanation
Indices: 97710062--97710234 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 53
97710052 ACCCTAAAAT
* * * *
97710062 AGGTAAAAT-AACTGTAATACCCCTATAGGGTAAATTGGCCGTAATGCCCCTGTA
1 AGGTAAAATGATC-GTAATGCCCCTATAGGGTAAA-TGACCGTAATGCCCCTATA
97710116 AGGTAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTATA
1 AGGTAAAATGATCGTAATGCCCCTATAGGGT-AAATGACCGTAATGCCCCTATA
* * * *
97710170 AGGTAAAATAATCATAATGCCCCTGTAGGGTAAGATGACCGTAATACCCCTATA
1 AGGTAAAATGATCGTAATGCCCCTATAGGGTAA-ATGACCGTAATGCCCCTATA
* *
97710224 TGTTAAAATGA
1 AGGTAAAATGA
97710235 CGATTATGCC
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
53 2 0.02
54 98 0.93
55 5 0.05
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (53 bp):
AGGTAAAATGATCGTAATGCCCCTATAGGGTAAATGACCGTAATGCCCCTATA
Found at i:97710543 original size:59 final size:59
Alignment explanation
Indices: 97710451--97710577 Score: 227
Period size: 59 Copynumber: 2.2 Consensus size: 59
97710441 GCTGCGATAT
* *
97710451 TGGTGTGTTGGCTGGGTGGGTTGATTTATATCCCCACATGGTGTGTTGGTTGGTACGGG
1 TGGTGTGCTAGCTGGGTGGGTTGATTTATATCCCCACATGGTGTGTTGGTTGGTACGGG
*
97710510 TGGTGTGCTAGCTGGGTGGGTTGGTTTATATCCCCACATGGTGTGTTGGTTGGTACGGG
1 TGGTGTGCTAGCTGGGTGGGTTGATTTATATCCCCACATGGTGTGTTGGTTGGTACGGG
97710569 TGGTGTGCT
1 TGGTGTGCT
97710578 GGATGAATTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.09, C:0.13, G:0.41, T:0.37
Consensus pattern (59 bp):
TGGTGTGCTAGCTGGGTGGGTTGATTTATATCCCCACATGGTGTGTTGGTTGGTACGGG
Found at i:97716789 original size:16 final size:15
Alignment explanation
Indices: 97716768--97716810 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
97716758 CTTCAATTAT
97716768 ATAATAAATTAAATAA
1 ATAATAAATTAAA-AA
97716784 ATAAT-AATTCAAAAA
1 ATAATAAATT-AAAAA
*
97716799 ATCATAAATTAA
1 ATAATAAATTAA
97716811 TTATTAGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAATAAATTAAAAA
Found at i:97718328 original size:21 final size:20
Alignment explanation
Indices: 97718281--97718333 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
97718271 GCACCAGTAA
* *
97718281 TCGGATGTCGCAACATCAAT
1 TCGGATGTTGCAACATAAAT
97718301 T-GGATGTTGCAACATAAGAT
1 TCGGATGTTGCAACATAA-AT
97718321 TCGGATGTTGCAA
1 TCGGATGTTGCAA
97718334 TTCATGTACG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.48
20 4 0.14
21 11 0.38
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (20 bp):
TCGGATGTTGCAACATAAAT
Found at i:97719469 original size:38 final size:35
Alignment explanation
Indices: 97719427--97719507 Score: 83
Period size: 37 Copynumber: 2.2 Consensus size: 35
97719417 CTTTTCATTG
*
97719427 TTTAATTAAGTTTATTATATATATT-AATAAATTTATTT
1 TTTAATT-A-TTT-TTACATATATTCAAT-AATTTATTT
97719465 TTTAAATTATTTTTACATATATTGCAATAATTTATTT
1 TTT-AATTATTTTTACATATATT-CAATAATTTATTT
*
97719502 ATTAAT
1 TTTAAT
97719508 AAATAAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
36 13 0.34
37 14 0.37
38 7 0.18
39 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (35 bp):
TTTAATTATTTTTACATATATTCAATAATTTATTT
Found at i:97720778 original size:27 final size:30
Alignment explanation
Indices: 97720712--97720784 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 30
97720702 GTCAATCATT
*
97720712 TCAATATCCAACAAGCTTCAAAAATAATAAA
1 TCAATATCTAACAAGCTT-AAAAATAATAAA
*
97720743 TCCAATATCTAACAAGCTT-AAAA-CAT-AA
1 T-CAATATCTAACAAGCTTAAAAATAATAAA
97720771 TCAATATCTAACAA
1 TCAATATCTAACAA
97720785 ATTCAAGACA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 13 0.33
28 3 0.08
29 2 0.05
30 4 0.10
31 1 0.03
32 16 0.41
ACGTcount: A:0.52, C:0.21, G:0.03, T:0.25
Consensus pattern (30 bp):
TCAATATCTAACAAGCTTAAAAATAATAAA
Found at i:97720795 original size:27 final size:27
Alignment explanation
Indices: 97720745--97720798 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
97720735 ATAATAAATC
*
97720745 CAATATCTAACAAGCTTAAAACATAAT
1 CAATATCTAACAAGATTAAAACATAAT
*
97720772 CAATATCTAACAA-ATTCAAGACATAAT
1 CAATATCTAACAAGATT-AAAACATAAT
97720799 AACTTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.52, C:0.19, G:0.04, T:0.26
Consensus pattern (27 bp):
CAATATCTAACAAGATTAAAACATAAT
Found at i:97723206 original size:25 final size:27
Alignment explanation
Indices: 97723169--97723221 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
97723159 TCAAACATGC
97723169 ATTTAGGTCAATTTA-ATCCTAGGGGT
1 ATTTAGGTCAATTTATATCCTAGGGGT
* *
97723195 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTATATCCTAGGGGT
97723221 A
1 A
97723222 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTATATCCTAGGGGT
Found at i:97724743 original size:26 final size:26
Alignment explanation
Indices: 97724707--97724840 Score: 225
Period size: 26 Copynumber: 5.2 Consensus size: 26
97724697 CATGAAATTC
*
97724707 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
97724733 TTATCATGAAACATTTACCTAACAC-A
1 TTATCATGAAACATTTACCTAAC-CTA
*
97724759 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
97724785 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97724811 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
97724837 TTAT
1 TTAT
97724841 TAATTTGTAT
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
25 1 0.01
26 102 0.98
27 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:97740304 original size:59 final size:60
Alignment explanation
Indices: 97740200--97740313 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 60
97740190 TTGAACAAAA
*
97740200 AAAAAGATTAAGTACCAAATTAAGTAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
1 AAAAAGATTAAATACCAAATTAAGTAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
* * * * *
97740260 AAAAAGATTAAATACTAATTTAAG-AAAAAGTGTTAAGTTTAAGTACCAAATTAA
1 AAAAAGATTAAATACCAAATTAAGTAAAAAGAGTCAAGTTCAAGTACCAAATTAA
97740314 GAAAAAATGT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
59 27 0.56
60 21 0.44
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.25
Consensus pattern (60 bp):
AAAAAGATTAAATACCAAATTAAGTAAAAAGAGTCAAGTTCAAGTACCAAATTAAACTCC
Found at i:97742850 original size:5 final size:5
Alignment explanation
Indices: 97742840--97742891 Score: 77
Period size: 5 Copynumber: 10.4 Consensus size: 5
97742830 TACAACCTTG
* * *
97742840 TAATA TAATA TAATA TAATA TAATA TAGTA TAGTA TAGTA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
97742890 TA
1 TA
97742892 TACGAGAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:97743084 original size:2 final size:2
Alignment explanation
Indices: 97743077--97743111 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
97743067 ATACTAACCT
97743077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97743112 TCGTAAATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:97743594 original size:3 final size:3
Alignment explanation
Indices: 97743579--97743631 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
97743569 CATAAATTAA
* * * * * *
97743579 AAG AAG GAG AAG AAG AAT AAA AAG AAA AAG AAG AAT AAG AAT AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
97743627 AAG AA
1 AAG AA
97743632 AGGATCATAT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.06
Consensus pattern (3 bp):
AAG
Found at i:97743602 original size:21 final size:20
Alignment explanation
Indices: 97743577--97743631 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
97743567 TCCATAAATT
97743577 AAAAGAAGGAGAAGAAGAATA
1 AAAAGAA-GAGAAGAAGAATA
97743598 AAAAGAA-A-AAGAAGAATA
1 AAAAGAAGAGAAGAAGAATA
* *
97743616 AGAATAAGAAGAAGAA
1 AAAAGAAG-AGAAGAA
97743632 AGGATCATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 15 0.52
19 1 0.03
20 1 0.03
21 12 0.41
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (20 bp):
AAAAGAAGAGAAGAAGAATA
Found at i:97743611 original size:18 final size:18
Alignment explanation
Indices: 97743588--97743631 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
97743578 AAAGAAGGAG
97743588 AAGAAGAATAAAAAGAAA
1 AAGAAGAATAAAAAGAAA
* * *
97743606 AAGAAGAATAAGAATAAG
1 AAGAAGAATAAAAAGAAA
97743624 AAGAAGAA
1 AAGAAGAA
97743632 AGGATCATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (18 bp):
AAGAAGAATAAAAAGAAA
Found at i:97745367 original size:27 final size:27
Alignment explanation
Indices: 97745337--97745392 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
97745327 CCAATGAAAG
97745337 TAATCAAAAGGGTTTCATAATGTTCAC
1 TAATCAAAAGGGTTTCATAATGTTCAC
97745364 TAATCAAAAGGGTTTCATAATGTTCAC
1 TAATCAAAAGGGTTTCATAATGTTCAC
97745391 TA
1 TA
97745393 TTTGAAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (27 bp):
TAATCAAAAGGGTTTCATAATGTTCAC
Found at i:97747212 original size:13 final size:14
Alignment explanation
Indices: 97747176--97747212 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
97747166 TGTAGCAACT
97747176 AAAGAAGAAAAATA
1 AAAGAAGAAAAATA
97747190 AAA-AAGAAAAATA
1 AAAGAAGAAAAATA
97747203 AAAGAA-AAAA
1 AAAGAAGAAAA
97747213 GAAAGCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (14 bp):
AAAGAAGAAAAATA
Found at i:97747423 original size:2 final size:2
Alignment explanation
Indices: 97747416--97747453 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
97747406 TTAAGCTTAG
97747416 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97747454 AAAGACTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97753219 original size:144 final size:144
Alignment explanation
Indices: 97752959--97753292 Score: 398
Period size: 144 Copynumber: 2.3 Consensus size: 144
97752949 GACAATTGAG
* * *
97752959 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGCCAGTG
* * ** * * * * *
97753024 TAAGACCATATCTGGGACATGGCATCGGTGTTGATATGTGTACTAGTGTAAGACCATGACTGGGA
66 TAAAACCATATCTGGGACATGGCATCAGCATTGAGACGAGGACTAATGTAAGACCATGACTGGGA
97753089 CATGGCATCAGCAT
131 CATGGCATCAGCAT
* *
97753103 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAAAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGCCAGTG
* * * * * * *
97753168 TAAAATCATGTCTGGGACATGGTATTAGCATTGAGGCGAGGGCTAATGTAAGACCATGTCTGGGA
66 TAAAACCATATCTGGGACATGGCATCAGCATTGAGACGAGGACTAATGTAAGACCATGACTGGGA
* *
97753233 CATGGCATCGGCCT
131 CATGGCATCAGCAT
* * * * * * *
97753247 CGACATGTGAGCCAGTGTAAGACCATATCTAGAACATGGCATCGGC
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
97753293 AATTTACCCT
Statistics
Matches: 159, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
144 159 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGCCAGTG
TAAAACCATATCTGGGACATGGCATCAGCATTGAGACGAGGACTAATGTAAGACCATGACTGGGA
CATGGCATCAGCAT
Found at i:97753266 original size:48 final size:48
Alignment explanation
Indices: 97752960--97753292 Score: 285
Period size: 48 Copynumber: 6.9 Consensus size: 48
97752950 ACAATTGAGT
* * * *
97752960 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTCAC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * ** *
97753008 -ATTATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGTGTT
1 GA-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
97753056 GATATGTGTA-CTAGTGTAAGACCATGACTGGGACATGGCATCAGCATT
1 GATATGTG-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
97753104 GATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** * * * ** * *
97753152 -ATTATGAAAGCTAGTGTAAAATCATGTCTGGGACATGGTATTAGCATT
1 GA-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*** * * *
97753200 GAGGCGAGGGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
97753248 GACATGTGAGCCAGTGTAAGACCATATCTAGAACATGGCATCGGC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
97753293 AATTTACCCT
Statistics
Matches: 222, Mismatches: 57, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
47 2 0.01
48 217 0.98
49 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:97763086 original size:31 final size:33
Alignment explanation
Indices: 97763018--97763088 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
97763008 TAGAAAAGTT
*
97763018 AATATTTTCTTGTGTTTGGATGAATTTGTGTAA
1 AATATTTTCTTGTGTTTGGATGAATTTCTGTAA
97763051 AATATTTTCTAT-TGTTT-GAT-AGATTTCT-TAA
1 AATATTTTCT-TGTGTTTGGATGA-ATTTCTGTAA
97763082 AATATTT
1 AATATTT
97763089 CATAAAAGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
31 11 0.31
32 8 0.23
33 15 0.43
34 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.14, T:0.54
Consensus pattern (33 bp):
AATATTTTCTTGTGTTTGGATGAATTTCTGTAA
Found at i:97763529 original size:16 final size:16
Alignment explanation
Indices: 97763498--97763534 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
97763488 ATGTGAAGAA
97763498 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
97763514 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
97763530 TATTA
1 TATTA
97763535 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:97763573 original size:16 final size:19
Alignment explanation
Indices: 97763548--97763603 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
97763538 TAAAATTGAA
97763548 ATATTAAATAATTTATTAA-
1 ATATT-AATAATTTATTAAT
97763567 A-A-TAATAAATTATATTAATT
1 ATATTAAT-AATT-TATTAA-T
97763587 ATATTAATAATTTATTA
1 ATATTAATAATTTATTA
97763604 TATGACTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.10
17 5 0.16
18 7 0.23
19 1 0.03
20 6 0.19
21 5 0.16
22 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATTAATAATTTATTAAT
Found at i:97766568 original size:45 final size:45
Alignment explanation
Indices: 97766492--97766619 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 45
97766482 CCAATGGTTT
* * * *
97766492 GCAGAT-GAA-CTGCCAATGGATATGGACACACAGTAAAAACACC
1 GCAGATGGAATCTGCCTATGGCTATGGATACACAGCAAAAACACC
* *
97766535 GCAGATGGAATCTGCCTATGGCTGTGGATACACAGCAAAAACACT
1 GCAGATGGAATCTGCCTATGGCTATGGATACACAGCAAAAACACC
* * * * *
97766580 GTACATGGAATCCGCCTATGGCTATGGGTACACAACAAAA
1 GCAGATGGAATCTGCCTATGGCTATGGATACACAGCAAAA
97766620 TAAAGCGAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 6 0.08
44 3 0.04
45 62 0.87
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (45 bp):
GCAGATGGAATCTGCCTATGGCTATGGATACACAGCAAAAACACC
Found at i:97777004 original size:44 final size:44
Alignment explanation
Indices: 97776958--97777442 Score: 377
Period size: 44 Copynumber: 10.9 Consensus size: 44
97776948 GGATTATCGC
** ** *
97776958 TTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTAATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * * *
97777002 TTCAATCAGCTCTACTGTAACTTCAGGAAAATAAGTTTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * *
97777046 TTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
97777090 TTCAATCTGCTCAACTACAACTTTAGGGAGATAAGATTCGTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * * *
97777134 TTC-ATCTCACTCTACTGTATCTTCA-GGAGATAAGATTTATATT
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * * *
97777177 TTCAATCTACTGCACTGCAAATTTAGGAAGATAAAATTTGTAGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * *
97777221 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
97777265 TTC-ATCTCACTCTACTGCATCTTCAGGGAGAAAAGATTTATAGCT
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG-T
* ** *
97777310 TT-AATCTGCTCCACTGCAATTTTTGGGAGATAAGATTTATA-T
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * * **
97777352 CTTTAATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCGCCATGGTAAC
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----T-GTAGT
*
97777403 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
97777443 CTATGGTAAC
Statistics
Matches: 345, Mismatches: 81, Indels: 30
0.76 0.18 0.07
Matches are distributed among these distances:
42 1 0.00
43 38 0.11
44 263 0.76
45 8 0.02
49 1 0.00
50 34 0.10
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
Found at i:97777225 original size:131 final size:131
Alignment explanation
Indices: 97776958--97777392 Score: 516
Period size: 132 Copynumber: 3.3 Consensus size: 131
97776948 GGATTATCGC
* * ** ** * * * *
97776958 TTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTAATAGCTTCA-ATCAGCTCTACTGTAA
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCA-CTCTACTGTAT
* * * *
97777022 CTTCAGGAAAATAAGTTTTGTAGTTTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGT
65 CTTCAGG-AGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGT
97777087 AGT
129 AGT
*
97777090 TTCAATCTGCTCAACTACAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGTATC
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGTATC
* * * * *
97777155 TTCAGGAGATAAGATTTATATTTTCAATCTACTGCACTGCAAATTTAGGAAGATAAAATTTGTAG
66 TTCAGGAGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGTAG
97777220 T
131 T
*
97777221 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGCATC
1 TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGTATC
* * * *
97777286 TTCAGGGAGAAAAGATTTATAGCTTT-AATCTGCTCCACTGCAATTTTTGGGAGATAAGATTTAT
66 TTCA-GGAGATAAGATTTATA-CTTTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGT
97777350 A-T
129 AGT
* * * * * **
97777352 CTTTAATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCG
1 -TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCG
97777393 CCATGGTAAC
Statistics
Matches: 262, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
131 120 0.46
132 136 0.52
133 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (131 bp):
TTCAATCTGCTCAACTGCAACTTTAGGGAGATAAGATTCGTTGTTTCATCTCACTCTACTGTATC
TTCAGGAGATAAGATTTATACTTTCAATCTACTCCACTGCAATTTTAGGGAGATAAGATTTGTAG
T
Found at i:97777487 original size:50 final size:50
Alignment explanation
Indices: 97777312--97777493 Score: 182
Period size: 50 Copynumber: 3.8 Consensus size: 50
97777302 TTATAGCTTT
* * * *
97777312 AATCTGCTCCACTGCAATTTTTGGGAGATAAGATTT---A---TATCTTT
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
* * * ** *
97777356 AATTTGCTCCATTGTAACTTCGGGGAGATAAGATTCGCCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
*
97777406 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATGGTAACTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
*
97777456 AATCTGAC-CCACTGCAACTTTAGAGG-TATAAGATTTGC
1 AATCTG-CTCCACTGCAACTTTAG-GGAGATAAGATTTGC
97777494 AGTTTTACCA
Statistics
Matches: 113, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
44 29 0.26
47 1 0.01
50 80 0.71
51 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (50 bp):
AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAACTTC
Found at i:97785588 original size:18 final size:19
Alignment explanation
Indices: 97785553--97785590 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
97785543 ACTCTACTAA
97785553 AAAACAAATATCTTTACAT
1 AAAACAAATATCTTTACAT
*
97785572 AAAATAAATAT-TTTACAT
1 AAAACAAATATCTTTACAT
97785590 A
1 A
97785591 TACAGCCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAACAAATATCTTTACAT
Found at i:97790072 original size:12 final size:11
Alignment explanation
Indices: 97790057--97790124 Score: 52
Period size: 12 Copynumber: 6.0 Consensus size: 11
97790047 ATAATTGCAG
97790057 TAATAATGATAA
1 TAATAAT-ATAA
97790069 TAATAA-AGTAA
1 TAATAATA-TAA
97790080 T-A-AATCATAA
1 TAATAAT-ATAA
* *
97790090 TGATAATAGCAA
1 TAATAATA-TAA
97790102 TAATAATATAA
1 TAATAATATAA
97790113 GTAATAATATAA
1 -TAATAATATAA
97790125 GTAAATACAG
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
9 2 0.04
10 6 0.13
11 9 0.20
12 29 0.63
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (11 bp):
TAATAATATAA
Found at i:97790125 original size:12 final size:12
Alignment explanation
Indices: 97790066--97790128 Score: 60
Period size: 12 Copynumber: 5.2 Consensus size: 12
97790056 GTAATAATGA
97790066 TAATAATA-AAG
1 TAATAATATAAG
97790077 TAATAAATCATAA-
1 TAAT-AAT-ATAAG
* *
97790090 TGATAATAGCAA-
1 TAATAATA-TAAG
97790102 TAATAATATAAG
1 TAATAATATAAG
97790114 TAATAATATAAG
1 TAATAATATAAG
97790126 TAA
1 TAA
97790129 ATACAGAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
11 7 0.16
12 30 0.70
13 4 0.09
14 2 0.05
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (12 bp):
TAATAATATAAG
Found at i:97791458 original size:21 final size:22
Alignment explanation
Indices: 97791429--97791472 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
97791419 TTTCTTTTGT
97791429 TTTTGCTCTTTTATTTCTGAAA
1 TTTTGCTCTTTTATTTCTGAAA
97791451 TTTT-CTCTTTTATTTCTGAAA
1 TTTTGCTCTTTTATTTCTGAAA
97791472 T
1 T
97791473 ATGCCTGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.18, C:0.14, G:0.07, T:0.61
Consensus pattern (22 bp):
TTTTGCTCTTTTATTTCTGAAA
Found at i:97798900 original size:19 final size:19
Alignment explanation
Indices: 97798878--97798914 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97798868 ATTTTCTTGT
* *
97798878 GTTTGTTTAACAGAAAATA
1 GTTTGGTTAACAAAAAATA
97798897 GTTTGGTTAACAAAAAAT
1 GTTTGGTTAACAAAAAAT
97798915 GACTTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (19 bp):
GTTTGGTTAACAAAAAATA
Found at i:97805722 original size:26 final size:26
Alignment explanation
Indices: 97805644--97805712 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
97805634 CTCCGGAGAA
97805644 CCTTTAA-CGGGAAGCTCACAAAGAG
1 CCTTTAATCGGGAAGCTCACAAAGAG
* * * *
97805669 CATTTAATAGGGAAGTTCACAAAAAG
1 CCTTTAATCGGGAAGCTCACAAAGAG
97805695 CCTTTAATCGGGAAGCTC
1 CCTTTAATCGGGAAGCTC
97805713 GTGAAGAGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
25 6 0.17
26 30 0.83
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CCTTTAATCGGGAAGCTCACAAAGAG
Found at i:97813249 original size:14 final size:13
Alignment explanation
Indices: 97813211--97813253 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
97813201 AAATTTACCG
97813211 ATAAAAA-TTTAA
1 ATAAAAACTTTAA
* *
97813223 AAAAAAACCTTAA
1 ATAAAAACTTTAA
97813236 ATAAAAACTTTTAA
1 ATAAAAAC-TTTAA
97813250 ATAA
1 ATAA
97813254 TTTAATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 6 0.24
13 11 0.44
14 8 0.32
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (13 bp):
ATAAAAACTTTAA
Found at i:97819494 original size:2 final size:2
Alignment explanation
Indices: 97819487--97819526 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
97819477 TAAGATATAA
97819487 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
97819527 TTAGTGGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97825097 original size:2 final size:2
Alignment explanation
Indices: 97825090--97825115 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97825080 CATCATATTC
97825090 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
97825116 GCCAAATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97826025 original size:16 final size:16
Alignment explanation
Indices: 97826004--97826037 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
97825994 CATCTTATAC
97826004 ATACACTTATTATTAT
1 ATACACTTATTATTAT
97826020 ATACACTTATTATTAT
1 ATACACTTATTATTAT
97826036 AT
1 AT
97826038 GGCCGAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (16 bp):
ATACACTTATTATTAT
Found at i:97827648 original size:14 final size:16
Alignment explanation
Indices: 97827625--97827657 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
97827615 TAAAGCATGA
97827625 AAATTCCACACAT-AT
1 AAATTCCACACATAAT
97827640 AAATT-CACACATAAT
1 AAATTCCACACATAAT
97827655 AAA
1 AAA
97827658 CACAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTCCACACATAAT
Found at i:97828439 original size:46 final size:47
Alignment explanation
Indices: 97828206--97828527 Score: 268
Period size: 47 Copynumber: 6.8 Consensus size: 47
97828196 AGGGTAGAAT
* * **
97828206 GCCGATGCCGTGTCCCAGACATGGTCTTACACTAGCTCAT-ACATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATATGTA
* * * **
97828253 GTCGATGCCATGTCCCAAACATGGTCTTACACT-GACTTTCGCGATCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ATAT-GTA
* * * *
97828301 GGCCGACGCCTTGTCCTAGACATGGTCTTACATTAGCTCTCACATATCCGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAT--GTA
* * * *
97828352 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-GTA
* *
97828398 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTA
* *
97828443 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGTA
*
97828492 GCCGAT-TCATGTCCCAGACAT-GTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
97828528 ACAAATGACT
Statistics
Matches: 226, Mismatches: 32, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
44 10 0.04
45 19 0.08
46 40 0.18
47 60 0.27
48 28 0.12
49 33 0.15
50 33 0.15
51 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTA
Found at i:97828509 original size:94 final size:93
Alignment explanation
Indices: 97828206--97828527 Score: 314
Period size: 94 Copynumber: 3.4 Consensus size: 93
97828196 AGGGTAGAAT
* *
97828206 GCCGATGCCGTGTCCCAGACATGGTCTTACACTAGCTCATACATC-AA-GTCGATGCCATGTCCC
1 GCCGAT-CCATGTCCCAGACATGGTCTTACACTAGCTC-TACATCTAATGCCGATGCCATGTCCC
* * * *
97828269 AAACATGGTCTTACACTGACTTTCGCGATCGAG
64 AGACATGGTCTTACACTGAC--TCTCTAT-GTG
* * * * * **
97828302 GCCGACGCCTTGTCCTAGACATGGTCTTACATTAGCTCTCACATATCCGTGCCGATGCCATGTCC
1 GCCGA-TCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCT-AATGCCGATGCCATGTCC
* * * *
97828367 TAGACATGGTCTTACACTGACACATCT-CGTA
63 CAGACATGGTCTTACACTGACTC-TCTATGTG
*
97828398 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTGAATGCCGATGCCATGTCCCA
1 GCCGATCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCT-AATGCCGATGCCATGTCCCA
*
97828461 GACATGGTCTTACACTGGCTCTCATAATGTG
65 GACATGGTCTTACACTGACTCTC-T-ATGTG
*
97828492 GCCGATTCATGTCCCAGACAT-GTCTTACACTAGCTC
1 GCCGATCCATGTCCCAGACATGGTCTTACACTAGCTC
97828528 ACAAATGACT
Statistics
Matches: 186, Mismatches: 31, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
91 2 0.01
92 41 0.22
94 52 0.28
95 13 0.07
96 43 0.23
97 1 0.01
98 1 0.01
99 33 0.18
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (93 bp):
GCCGATCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTCTCTATGTG
Found at i:97832048 original size:20 final size:20
Alignment explanation
Indices: 97832023--97832061 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
97832013 TATAAAATAT
97832023 AAAATAT-ACGAATATTAAAA
1 AAAATATGAC-AATATTAAAA
97832043 AAAATATGACAATATTAAA
1 AAAATATGACAATATTAAA
97832062 TTCACTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAATATGACAATATTAAAA
Found at i:97836394 original size:2 final size:2
Alignment explanation
Indices: 97836387--97836422 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97836377 TATATTATTT
97836387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97836423 AAAACAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97836505 original size:13 final size:13
Alignment explanation
Indices: 97836487--97836524 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
97836477 GAAACAGGGG
97836487 AGAAAGGAGAAAA
1 AGAAAGGAGAAAA
97836500 AGAAAGGA-AAGAA
1 AGAAAGGAGAA-AA
*
97836513 AGAAAGGGGAAA
1 AGAAAGGAGAAA
97836525 TTCAAAGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 18 0.82
14 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
AGAAAGGAGAAAA
Found at i:97837027 original size:51 final size:51
Alignment explanation
Indices: 97836951--97837068 Score: 175
Period size: 51 Copynumber: 2.3 Consensus size: 51
97836941 CTAAGTTATT
* *
97836951 CGGATGAAATATGAAGCTCTTGTTGAAACTAGAGCAATAAAGTAAT-ATATC
1 CGGATGAAATATGAAGCTCTTGTTGAAACTAGAACAACAAAGTAATAAT-TC
* *
97837002 CGGATGAAATATGAAGTTCTTGTTGAAGCTAGAACAACAAAGTAATAATTC
1 CGGATGAAATATGAAGCTCTTGTTGAAACTAGAACAACAAAGTAATAATTC
*
97837053 CGGATGAAGTATGAAG
1 CGGATGAAATATGAAG
97837069 AAAATTTGGG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 59 0.97
52 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (51 bp):
CGGATGAAATATGAAGCTCTTGTTGAAACTAGAACAACAAAGTAATAATTC
Found at i:97837397 original size:15 final size:15
Alignment explanation
Indices: 97837377--97837431 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
97837367 CGATGAATTT
97837377 ATTGAAATTATTTTG
1 ATTGAAATTATTTTG
97837392 ATTGAAATTATTTTG
1 ATTGAAATTATTTTG
* *
97837407 ATTGAATTTATATTG
1 ATTGAAATTATTTTG
97837422 ATTG-AATTAT
1 ATTGAAATTAT
97837432 ATAATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
14 5 0.14
15 32 0.86
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGAAATTATTTTG
Found at i:97837837 original size:23 final size:23
Alignment explanation
Indices: 97837807--97837893 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
97837797 GCTTTACCGA
* * *
97837807 TCAGGCACTTTATGTGTCATATT
1 TCAGGCACCTCATGTGTCGTATT
*
97837830 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
97837851 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
97837873 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
97837894 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
21 35 0.65
22 2 0.04
23 17 0.31
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:97838160 original size:20 final size:20
Alignment explanation
Indices: 97838135--97838187 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
97838125 GGAGTTCGAA
97838135 TTGATGATATATGATGCCAT
1 TTGATGATATATGATGCCAT
*
97838155 TTGATGA-AT-TGAAATGCGAT
1 TTGATGATATATG--ATGCCAT
97838175 TTGA-GATATATGA
1 TTGATGATATATGA
97838188 ATCTATGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
18 2 0.07
19 5 0.18
20 19 0.68
21 2 0.07
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (20 bp):
TTGATGATATATGATGCCAT
Found at i:97841416 original size:20 final size:20
Alignment explanation
Indices: 97841388--97841425 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97841378 CATGGAAAAA
*
97841388 CAGGGGCACCAAAGTGCAAT
1 CAGGAGCACCAAAGTGCAAT
*
97841408 CAGGAGCACCAGAGTGCA
1 CAGGAGCACCAAAGTGCA
97841426 GTTAAGGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.26, G:0.32, T:0.08
Consensus pattern (20 bp):
CAGGAGCACCAAAGTGCAAT
Found at i:97841436 original size:40 final size:41
Alignment explanation
Indices: 97841391--97841476 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 41
97841381 GGAAAAACAG
97841391 GGGCACCAAA-GTGCAATCAG-GAGCACCAGAGTGCAGTT-AA
1 GGGCACCAAATGTGCAATCAGAG-GCACCAGAGTGCA-TTCAA
** *
97841431 GGGCA-CAAATGTGTTATCAGAGGCACTAGAGTGCATTCAA
1 GGGCACCAAATGTGCAATCAGAGGCACCAGAGTGCATTCAA
97841471 GGGCAC
1 GGGCAC
97841477 GGATGTGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
39 6 0.15
40 32 0.82
41 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.30, T:0.16
Consensus pattern (41 bp):
GGGCACCAAATGTGCAATCAGAGGCACCAGAGTGCATTCAA
Found at i:97845749 original size:32 final size:32
Alignment explanation
Indices: 97845673--97845749 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 32
97845663 AAAAATTATT
*
97845673 AAATAATTTATTATTATTATTAAAATTATAAA
1 AAATAATTAATTATTATTATTAAAATTATAAA
* ** * *
97845705 ATATAAAAAATTATT-TTTTTAAAATTTTAAA
1 AAATAATTAATTATTATTATTAAAATTATAAA
97845736 AAATTAATTAATTA
1 AAA-TAATTAATTA
97845750 ATGACATGAC
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
31 16 0.46
32 19 0.54
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (32 bp):
AAATAATTAATTATTATTATTAAAATTATAAA
Found at i:97850624 original size:45 final size:45
Alignment explanation
Indices: 97850557--97850725 Score: 144
Period size: 45 Copynumber: 3.7 Consensus size: 45
97850547 TGTGAACTCG
*
97850557 TAGAAGAAGAATTCATAGATATGGTAGACTTATAAATG-TGACTTCA
1 TAGAAGAAG-ATTCATAGATATGGTAGACTTATAAATGCAGA-TTCA
** * * *
97850603 TTTAAGAAGATTCATAGATATGGCAAACTTATATATGCAGATTCA
1 TAGAAGAAGATTCATAGATATGGTAGACTTATAAATGCAGATTCA
* * * * ** *
97850648 TAGAAGCAGATTCATAGTTATGGTGGTCTTATACTTGC-GAATTTA
1 TAGAAGAAGATTCATAGATATGGTAGACTTATAAATGCAG-ATTCA
* * * *
97850693 GAGAAGAAAATTTATAGATATGGCAGACTTATA
1 TAGAAGAAGATTCATAGATATGGTAGACTTATA
97850726 CGTGCGAACT
Statistics
Matches: 96, Mismatches: 25, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
44 1 0.01
45 86 0.90
46 9 0.09
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (45 bp):
TAGAAGAAGATTCATAGATATGGTAGACTTATAAATGCAGATTCA
Found at i:97852747 original size:40 final size:40
Alignment explanation
Indices: 97852694--97852790 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
97852684 CTAAGTTAGT
* * *
97852694 ATCGCACACTTAGTG-CCTCATATAGTCGAAGATAATTTAA
1 ATCGCACACTTAGTGCCCT-AAATAGCCAAAGATAATTTAA
* * *
97852734 ATCGCACACTTAGTGCCCTAAATAGCCAAAGCTAGTTTCA
1 ATCGCACACTTAGTGCCCTAAATAGCCAAAGATAATTTAA
97852774 ATCGCACACTTAGTGCC
1 ATCGCACACTTAGTGCC
97852791 AAATATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
40 47 0.94
41 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCCTAAATAGCCAAAGATAATTTAA
Found at i:97860042 original size:40 final size:40
Alignment explanation
Indices: 97859989--97860083 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
97859979 AAGTTAGTAC
* * *
97859989 CGCACACTTAGTG-CCTCATATAGTCGAAGATAATTTAAAT
1 CGCACACTTAGTGCCCT-AAATAGCCAAAGATAATTTAAAT
* * *
97860029 CGCACACTTAGTGCCCTAAATAGCCAAAGCTAGTTTCAAT
1 CGCACACTTAGTGCCCTAAATAGCCAAAGATAATTTAAAT
97860069 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
97860084 AAATATCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 45 0.94
41 3 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (40 bp):
CGCACACTTAGTGCCCTAAATAGCCAAAGATAATTTAAAT
Found at i:97862560 original size:42 final size:42
Alignment explanation
Indices: 97862514--97862595 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
97862504 AGTTGAACGG
* * *
97862514 AAGCTCATAAGAGTTGAA-TGAAAACCCGTAAGGGTTAAACTA
1 AAGCTCAAAAGAGCTGAATTG-AAACCCATAAGGGTTAAACTA
* *
97862556 AAGCTCAAAATAGCTGAATTGAAACCCATTAGGGTTAAAC
1 AAGCTCAAAAGAGCTGAATTGAAACCCATAAGGGTTAAAC
97862596 GGAAACTCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.22
Consensus pattern (42 bp):
AAGCTCAAAAGAGCTGAATTGAAACCCATAAGGGTTAAACTA
Found at i:97866493 original size:26 final size:26
Alignment explanation
Indices: 97866464--97866520 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
97866454 TTCCTGAAGC
*
97866464 TTATCTCCCATGCTA-ATATTAATCAA
1 TTATATCCCATGCTAGAT-TTAATCAA
*
97866490 TTATATCCCATGCTAGATTTAATCTA
1 TTATATCCCATGCTAGATTTAATCAA
97866516 TTATA
1 TTATA
97866521 AGATGCCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.42
Consensus pattern (26 bp):
TTATATCCCATGCTAGATTTAATCAA
Found at i:97866849 original size:18 final size:18
Alignment explanation
Indices: 97866828--97866870 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
97866818 TAAGTATAAA
97866828 AATTAACCAAATTAACTG
1 AATTAACCAAATTAACTG
*
97866846 AATTAACCGAATTAACTG
1 AATTAACCAAATTAACTG
97866864 AATTAAC
1 AATTAAC
97866871 AAAAACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.28
Consensus pattern (18 bp):
AATTAACCAAATTAACTG
Found at i:97866866 original size:9 final size:9
Alignment explanation
Indices: 97866837--97866870 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
97866827 AAATTAACCA
97866837 AATTAACTG
1 AATTAACTG
*
97866846 AATTAACCG
1 AATTAACTG
97866855 AATTAACTG
1 AATTAACTG
97866864 AATTAAC
1 AATTAAC
97866871 AAAAACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAACTG
Found at i:97867210 original size:17 final size:15
Alignment explanation
Indices: 97867183--97867238 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 15
97867173 TTAAACCTAC
97867183 AAAAAAT-ACATGTGTA
1 AAAAAATAACAT-T-TA
97867199 AAAAAATAACATTTA
1 AAAAAATAACATTTA
97867214 ATAAAAATATACGCATTTA
1 A-AAAAATA-A--CATTTA
97867233 AAAAAA
1 AAAAAA
97867239 ATCAAATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.09
16 15 0.43
17 5 0.14
18 5 0.14
19 7 0.20
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (15 bp):
AAAAAATAACATTTA
Found at i:97867218 original size:18 final size:19
Alignment explanation
Indices: 97867197--97867239 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
97867187 AATACATGTG
97867197 TAAAAAAATA-ACATTTAA
1 TAAAAAAATACACATTTAA
* *
97867215 TAAAAATATACGCATTTAA
1 TAAAAAAATACACATTTAA
97867234 -AAAAAA
1 TAAAAAA
97867240 TCAAATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.26
Consensus pattern (19 bp):
TAAAAAAATACACATTTAA
Found at i:97870127 original size:19 final size:19
Alignment explanation
Indices: 97870103--97870141 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
97870093 ATCTTAAACT
*
97870103 AAATAAATTACAGTAATAA
1 AAATAAATTACAGCAATAA
*
97870122 AAATAATTTACAGCAATAA
1 AAATAAATTACAGCAATAA
97870141 A
1 A
97870142 TTACAGTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (19 bp):
AAATAAATTACAGCAATAA
Found at i:97870664 original size:19 final size:19
Alignment explanation
Indices: 97870640--97870680 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
97870630 GCTATGATAC
*
97870640 TTTTGAAGGTTTTGGGAGA
1 TTTTGAAGGTTTTGAGAGA
97870659 TTTTGAAGGTTTTGAGAGA
1 TTTTGAAGGTTTTGAGAGA
97870678 TTT
1 TTT
97870681 CAAATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (19 bp):
TTTTGAAGGTTTTGAGAGA
Found at i:97876906 original size:16 final size:16
Alignment explanation
Indices: 97876887--97876920 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
97876877 GGGTTCAAGG
97876887 TTAAAAGGGGTCTAGT
1 TTAAAAGGGGTCTAGT
97876903 TTAAAAGGGGTCTAGT
1 TTAAAAGGGGTCTAGT
97876919 TT
1 TT
97876921 TTTTTAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (16 bp):
TTAAAAGGGGTCTAGT
Found at i:97881188 original size:7 final size:8
Alignment explanation
Indices: 97881165--97881205 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
97881155 TTTTAATATT
97881165 TTTAAAAA
1 TTTAAAAA
*
97881173 TTCAAAAAA
1 TT-TAAAAA
97881182 TTTAAAAA
1 TTTAAAAA
97881190 TTTAAAAA
1 TTTAAAAA
97881198 TTATAAAA
1 TT-TAAAA
97881206 TAAATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 17 0.59
9 12 0.41
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (8 bp):
TTTAAAAA
Found at i:97881204 original size:9 final size:9
Alignment explanation
Indices: 97881167--97881254 Score: 58
Period size: 9 Copynumber: 9.7 Consensus size: 9
97881157 TTAATATTTT
97881167 TAAAAATTCA
1 TAAAAATT-A
97881177 -AAAAATT-
1 TAAAAATTA
97881184 TAAAAATT-
1 TAAAAATTA
97881192 TAAAAATTA
1 TAAAAATTA
97881201 TAAAATAAATTA
1 T--AA-AAATTA
* **
97881213 TTAATGTTA
1 TAAAAATTA
*
97881222 TTAAAAAGTA
1 -TAAAAATTA
*
97881232 TAAAAACTA
1 TAAAAATTA
97881241 TAAAAA-TA
1 TAAAAATTA
97881249 TAAAAA
1 TAAAAA
97881255 AATATTTTTC
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
8 23 0.36
9 26 0.41
10 6 0.09
11 2 0.03
12 7 0.11
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:97881205 original size:17 final size:17
Alignment explanation
Indices: 97881165--97881197 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97881155 TTTTAATATT
97881165 TTTAAAAATTCAAAAAA
1 TTTAAAAATTCAAAAAA
*
97881182 TTTAAAAATTTAAAAA
1 TTTAAAAATTCAAAAA
97881198 TTATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
TTTAAAAATTCAAAAAA
Found at i:97886536 original size:3 final size:3
Alignment explanation
Indices: 97886521--97886966 Score: 321
Period size: 3 Copynumber: 150.0 Consensus size: 3
97886511 GGAAAGTATT
* * * *
97886521 ATA ATA ATT ATA ATA ATA ATG ATA AGCTA ATA ATG ACA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA
** * * *
97886567 A-A GCA ATA ATA ATA AGA ATA ATG ATA A-A CATA A-A AGA A-A AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
97886608 ATA ATT ATA GT- ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97886653 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
97886701 ATA GTA ATA ATA ATA TTA ATA A-A A-A ATA A-A ATTA ATGA AT- GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A ATA ATA
* * *
97886744 ATA GTA ACA TATA ATA ATA ATG A-A ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
97886789 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATG TTA ACA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
97886836 ATA ATA A-A AAA ATA GAAA ATA ATA ATA TATGA ATA ATA AT- ATG CTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA
* * * * * * * * * *
97886882 TTA ATA ACA ACA GTA AAA ATA GAAA ATA GTA CTA ATA AAA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
97886928 ATT ATA A-A TATA ATA TTA CTA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97886967 TTAAAATTAA
Statistics
Matches: 349, Mismatches: 67, Indels: 54
0.74 0.14 0.11
Matches are distributed among these distances:
2 26 0.07
3 300 0.86
4 19 0.05
5 4 0.01
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:97886899 original size:55 final size:51
Alignment explanation
Indices: 97886812--97886925 Score: 102
Period size: 55 Copynumber: 2.2 Consensus size: 51
97886802 TAATAATAAT
* ** *
97886812 AATAATAATATGTTAACAATAATGATAATAAAAAAATAGAAAATAATAATATAT
1 AATAATAATATGCTAACAATAACAACAAT--AAAAATAGAAAATAATAATA-AT
** * * *
97886866 GAATAATAATATGCTATTAATAACAACAGTAAAAATAGAAAATAGTACTAAT
1 -AATAATAATATGCTAACAATAACAACAATAAAAATAGAAAATAATAATAAT
*
97886918 AAAAATAA
1 AATAATAA
97886926 AAATTATAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
51 7 0.14
52 2 0.04
53 18 0.37
55 22 0.45
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.27
Consensus pattern (51 bp):
AATAATAATATGCTAACAATAACAACAATAAAAATAGAAAATAATAATAAT
Found at i:97887408 original size:3 final size:3
Alignment explanation
Indices: 97887400--97887506 Score: 56
Period size: 3 Copynumber: 35.7 Consensus size: 3
97887390 TTCAATAATT
* * * *
97887400 TAA TAA TAA TGA -AA TAA TAC TAA TAA TAA AAA T-A TAGA AAA TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A
* * * * * * * *
97887445 AAA TAG TAC TAA TAA AAA TAA AAA TAA TAT TAA TAA TAT TAC TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
97887493 CAA CAA TAA TAA TA
1 TAA TAA TAA TAA TA
97887507 TTAAAATTAA
Statistics
Matches: 76, Mismatches: 24, Indels: 8
0.70 0.22 0.07
Matches are distributed among these distances:
2 3 0.04
3 69 0.91
4 4 0.05
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:97887504 original size:33 final size:33
Alignment explanation
Indices: 97887446--97887510 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
97887436 GAAAATAGAA
*
97887446 AATAGTACTAATAAAAATAAAAATAATATTAAT
1 AATAGTACTAATAAAAACAAAAATAATATTAAT
* * *
97887479 AATATTACTAATAACAACAATAATAATATTAA
1 AATAGTACTAATAAAAACAAAAATAATATTAA
97887511 AATTAATTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.31
Consensus pattern (33 bp):
AATAGTACTAATAAAAACAAAAATAATATTAAT
Found at i:97889059 original size:39 final size:39
Alignment explanation
Indices: 97889013--97889266 Score: 314
Period size: 39 Copynumber: 6.5 Consensus size: 39
97889003 ACTCACTTTT
* * ** *
97889013 AAGCATATATCTCATTAGACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
97889052 AAGCATATATTACAATACTCATATAATTACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
97889091 AAGCATATATCACAATACTCATGTAGTCCCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * * *
97889130 AAACATATATCACAATACTCATATAGTCGCATAAAATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* **
97889169 AAGCATATATCACAATACTCATATAGTTGCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
97889208 AAGCATATAT-ACAATACTCATATAATTACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
97889246 AAGCATATATCACGAA-ACTCA
1 AAGCATATATCAC-AATACTCA
97889267 AAAACATGTT
Statistics
Matches: 192, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 36 0.19
39 154 0.80
40 2 0.01
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:97891610 original size:39 final size:39
Alignment explanation
Indices: 97891556--97891665 Score: 193
Period size: 39 Copynumber: 2.8 Consensus size: 39
97891546 GATGTTCATC
*
97891556 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATT
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAAT
97891595 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAAT
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAAT
* *
97891634 CGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
97891666 ATATGTCCGG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (39 bp):
CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAAT
Found at i:97891702 original size:78 final size:78
Alignment explanation
Indices: 97891556--97891709 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 78
97891546 GATGTTCATC
* * * * ** *
97891556 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATTCGGACTTAGGGTCCGCAGGCTATGTG
1 CGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAG
97891621 CTGGAATTATAAT
66 CTGGAATTATAAT
* *
97891634 CGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGGCT-TCG
1 CGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CGCAGGCTAT-G
*
97891697 AGCTGGTATTATA
64 AGCTGGAATTATA
97891710 CCGGGTTTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 6 0.09
78 58 0.91
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (78 bp):
CGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAG
CTGGAATTATAAT
Found at i:97899642 original size:39 final size:39
Alignment explanation
Indices: 97899587--97899726 Score: 194
Period size: 39 Copynumber: 3.6 Consensus size: 39
97899577 AGTGATGTTC
*
97899587 ATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTAT
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAT
97899626 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAT
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAT
* * *
97899665 AACCGGACTTAAGGTCCACAGGCTACGTGCTGGAA-TAT
1 ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAT
* * *
97899703 GTCCGGGC-TAAAGTCCCGCAGGCT
1 ATCCGGACTTAAGGT-CCGCAGGCT
97899727 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
37 5 0.05
38 16 0.18
39 70 0.77
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTAT
Found at i:97902068 original size:21 final size:21
Alignment explanation
Indices: 97902044--97902084 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97902034 TAACGGGACC
97902044 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
**
97902065 GCTGATGTGGCCGGTTAACT
1 GCTGATGTGGCAAGTTAACT
97902085 TGCCACGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:97904698 original size:38 final size:39
Alignment explanation
Indices: 97904570--97904698 Score: 120
Period size: 38 Copynumber: 3.3 Consensus size: 39
97904560 ATAATTTGTA
* * *
97904570 ATAATA-ATATATACACAATATGGTATTTAAAATATATAT
1 ATAATATATATATACACTA-ATGGTATTAAAAATATATAC
* * * *
97904609 ATATATATATATGTATA-TAATAGTATTTAAGAATATATAC
1 ATA-ATATATATATACACTAATGGTA-TTAAAAATATATAC
* * *
97904649 ATAAGAAATATATA-ACTAATGGCATTAAAAATATATAC
1 ATAATATATATATACACTAATGGTATTAAAAATATATAC
97904687 ATAATATATATA
1 ATAATATATATA
97904699 AAATACCTAA
Statistics
Matches: 71, Mismatches: 15, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
38 24 0.34
39 22 0.31
40 18 0.25
41 7 0.10
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (39 bp):
ATAATATATATATACACTAATGGTATTAAAAATATATAC
Found at i:97904823 original size:10 final size:10
Alignment explanation
Indices: 97904808--97904839 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
97904798 CTCCGCCCGT
97904808 CGTCGGCCAC
1 CGTCGGCCAC
97904818 CGTCGGCCAC
1 CGTCGGCCAC
97904828 CGTCGGCCAC
1 CGTCGGCCAC
97904838 CG
1 CG
97904840 CCCACGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.50, G:0.31, T:0.09
Consensus pattern (10 bp):
CGTCGGCCAC
Found at i:97905249 original size:16 final size:15
Alignment explanation
Indices: 97905230--97905265 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
97905220 TTTCTTCTTT
97905230 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGG-TAGG
97905246 TTTTTTTTGGGTAGG
1 TTTTTTTTGGGTAGG
97905261 TTTTT
1 TTTTT
97905266 CTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.06, C:0.00, G:0.28, T:0.67
Consensus pattern (15 bp):
TTTTTTTTGGGTAGG
Found at i:97905280 original size:16 final size:15
Alignment explanation
Indices: 97905261--97905296 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
97905251 TTTGGGTAGG
*
97905261 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
97905277 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
97905292 TTTTT
1 TTTTT
97905297 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:97906087 original size:87 final size:80
Alignment explanation
Indices: 97905983--97906188 Score: 342
Period size: 79 Copynumber: 2.5 Consensus size: 80
97905973 GAGCCAAGGC
97905983 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA---AACTTGAAAAGCAGA--TT-AAAA
97906048 TACCTCGATATGTGACTGGAGG
59 TACCTCGATATGTGACTGGAGG
97906070 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACTTGAAAAGCAGATTAAAATACCTCG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACTTGAAAAGCAGATTAAAATACCTCG
97906134 ATATGTGACTGGAGG
66 ATATGTGACTGGAGG
97906149 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
97906189 AGAAATTAAA
Statistics
Matches: 118, Mismatches: 0, Indels: 9
0.93 0.00 0.07
Matches are distributed among these distances:
79 60 0.51
80 7 0.06
82 15 0.13
85 2 0.02
86 6 0.05
87 28 0.24
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (80 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACTTGAAAAGCAGATTAAAATACCTCG
ATATGTGACTGGAGG
Found at i:97906234 original size:29 final size:30
Alignment explanation
Indices: 97906188--97906248 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
97906178 TTTTGAAAAA
97906188 CAGAAATTAAAAGACTCAACTCA-CTCTCG
1 CAGAAATTAAAAGACTCAACTCACCTCTCG
97906217 CAGAAATTAAAA-AGCTCAACTCACCTCTCG
1 CAGAAATTAAAAGA-CTCAACTCACCTCTCG
97906247 CA
1 CA
97906249 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 1 0.03
29 21 0.70
30 8 0.27
ACGTcount: A:0.41, C:0.30, G:0.10, T:0.20
Consensus pattern (30 bp):
CAGAAATTAAAAGACTCAACTCACCTCTCG
Found at i:97906364 original size:88 final size:88
Alignment explanation
Indices: 97906271--97906432 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
97906261 TTTTTTTGAA
* * * *
97906271 AAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCGA-CACGTAACCCAAGGCTCAACTCACATCTCGCAATATGA
97906335 GTTGATTTTTGAAAACAGAATTTG
65 GTTGATTTTTGAAAACAGAATTTG
** * * *
97906359 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGAAATTGAAAATACCTCGACACGTAACCCAAGGCTCAACTCACATCTCGCAATATGAG
97906424 TTGATTTTT
66 TTGATTTTT
97906433 TTGAAAAATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
88 63 0.98
89 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCGACACGTAACCCAAGGCTCAACTCACATCTCGCAATATGAG
TTGATTTTTGAAAACAGAATTTG
Found at i:97906365 original size:14 final size:14
Alignment explanation
Indices: 97906342--97906376 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
97906332 TGAGTTGATT
97906342 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
97906355 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
97906369 TTTGAAAA
1 TTTGAAAA
97906377 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:97906495 original size:167 final size:166
Alignment explanation
Indices: 97905981--97906532 Score: 494
Period size: 167 Copynumber: 3.3 Consensus size: 166
97905971 GTGAGCCAAG
** * *
97905981 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAAAACAGATTTTGA
* * **
97906045 AAATACCTCGATATGTGACTGGAGG-TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
65 AAATACCTCGACATGTAACAAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
* * *
97906107 ACT-TGAAA-AGCAGATTAAAATACCTC-GATATGTGACTGGA
130 AATAT-AAATTG-A-A--AAAATACCTCAG-TATGTGACTGAA
* * *
97906147 GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT---AAA-AGA--CT-C
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAAAAACAGATTTTGA
* * * * *
97906205 AACTCACTCTCG-CA-GAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTT
65 AAAT-AC-CTCGACATGTAA-CAAGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTT
* * * * * *
97906268 GAAAAAAACAGAAATTG--AAAATAGCTCAGCACGTGAGC-CAA
126 G--AAAAATATAAATTGAAAAAATACCTCAGTATGTGA-CTGAA
* *
97906309 GGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAACAGATTTTGA
1 -GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGATTTTGA
** * *
97906374 AAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAA
65 AAATACCTCGACATGTAACAAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
*
97906439 AATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA
130 AATATAAATTGAAAAAATACCTCAGTATGTGA-CTGAA
*
97906477 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAAA
97906533 TAGCTCAGCG
Statistics
Matches: 305, Mismatches: 50, Indels: 58
0.74 0.12 0.14
Matches are distributed among these distances:
160 5 0.02
161 6 0.02
162 57 0.19
163 40 0.13
164 2 0.01
165 27 0.09
166 32 0.10
167 73 0.24
168 36 0.12
169 15 0.05
170 12 0.04
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (166 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGATTTTGAA
AATACCTCGACATGTAACAAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
ATATAAATTGAAAAAATACCTCAGTATGTGACTGAA
Found at i:97906563 original size:244 final size:243
Alignment explanation
Indices: 97906068--97906607 Score: 672
Period size: 244 Copynumber: 2.2 Consensus size: 243
97906058 TGTGACTGGA
*
97906068 GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC----TTGAAAAGCAGATTAAAATA
1 GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGATTAAAATA
* * ** *
97906129 CCTCGATATGTGACTGGAGGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
66 CCTCGACATGTAACCCGAGGTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
*
97906194 TTAAAAGACTCAACTCACTCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTG
131 TTAAAAGAATCAACTCACTCTCGCAG-AATT-AAAAGCTCAACTCACCTCTCGCAATATGAGTTG
*
97906259 AATTTTTTTGAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAG
194 AATTTTTTTG-AAAAAACAGAAATTGAAAATAGCTCAGCACATGAGCCAAG
* *
97906310 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAACAGATTTTGAA
1 GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA-TTGAAAAACAGA--TT-AA
*
97906375 AATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAA
62 AATACCTCGACATGTAACCCGAGG-TCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAA
* * * * * * *
97906440 ATATAAATTGAAAA-AAT-ACCTCAGTGT-G-TG-ATCT-GAAGCTCAACTCACCTCTCGCAATA
124 ACAGAAATT-AAAAGAATCAACTCACTCTCGCAGAAT-TAAAAGCTCAACTCACCTCTCGCAATA
* * *
97906499 TGAGTTG-ATTTTTTTG-AAAGATAGAAATTGAAAATAGCTCAGCGCATGAGCCAAG
187 TGAGTTGAATTTTTTTGAAAAAACAGAAATTGAAAATAGCTCAGCACATGAGCCAAG
*
97906554 GGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAA
1 GGTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAG-AATTGAAAA
97906608 TACCTCAACG
Statistics
Matches: 259, Mismatches: 24, Indels: 27
0.84 0.08 0.09
Matches are distributed among these distances:
242 39 0.15
244 62 0.24
245 20 0.08
246 11 0.04
247 42 0.16
248 2 0.01
249 3 0.01
250 23 0.09
251 27 0.10
252 7 0.03
253 19 0.07
254 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (243 bp):
GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAAAAACAGATTAAAATA
CCTCGACATGTAACCCGAGGTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
TTAAAAGAATCAACTCACTCTCGCAGAATTAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTTTTGAAAAAACAGAAATTGAAAATAGCTCAGCACATGAGCCAAG
Found at i:97906677 original size:72 final size:73
Alignment explanation
Indices: 97906394--97906925 Score: 395
Period size: 72 Copynumber: 6.8 Consensus size: 73
97906384 ACATGTAACC
* * * *
97906394 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
97906459 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
97906472 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
97906537 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
97906550 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
97906615 ACGTGTCT
66 GCGTGTCT
* ** * * *
97906623 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
97906687 GCGTGTCC
66 GCGTGTCT
*
97906695 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-------TTTTTTGAAA-ACAGAAATTG---
** ** *
97906760 AATGGAAATTGAAAATACCTCGACGTGTGAT
55 -A---AAA-T--ACCT-CAGC---GTGT-CT
* * * *
97906791 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAATAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
97906856 CAGCGTGTC-
64 CAGCGTGTCT
* *
97906865 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
97906926 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 67
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 31 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 10 0.03
81 9 0.02
82 1 0.00
83 2 0.01
85 1 0.00
86 1 0.00
88 2 0.01
89 1 0.00
90 8 0.02
91 11 0.03
92 2 0.01
95 4 0.01
96 1 0.00
97 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:97906878 original size:171 final size:168
Alignment explanation
Indices: 97906591--97907068 Score: 709
Period size: 165 Copynumber: 2.9 Consensus size: 168
97906581 TGATTTTTTG
* * * ** * *
97906591 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
97906654 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
97906718 ATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA--TTTTTTTTTTTGAAAGGCAAAAATTGA
*
97906758 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
97906823 TGACTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
97906888 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
97906923 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
97906988 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
97907053 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
97907069 GAAAAAGTAG
Statistics
Matches: 282, Mismatches: 21, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
165 156 0.55
167 27 0.10
168 1 0.00
169 30 0.11
171 68 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:97906887 original size:74 final size:75
Alignment explanation
Indices: 97906764--97906908 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 75
97906754 TTGAAAAATG
*
97906764 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
97906829 TTTTGACAATA
65 TTTTGACAATA
* * *
97906840 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
97906903 TTTTGA
65 TTTTGA
97906909 AAGGCAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
75 1 0.02
76 21 0.33
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAATA
Found at i:97907054 original size:74 final size:75
Alignment explanation
Indices: 97906929--97907068 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
97906919 TTGAAAAACG
* *
97906929 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
97906994 TTTTGACAACA
65 TTTTGACAACA
* * *
97907005 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
97907069 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:97907267 original size:72 final size:71
Alignment explanation
Indices: 97907133--97907298 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
97907123 TGAACAACGT
* * * *
97907133 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
97907198 GAGTTG
66 GAGTTG
*
97907204 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
97907269 TGAGTTG
65 TGAGTTG
**
97907276 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
97907299 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:97907441 original size:71 final size:71
Alignment explanation
Indices: 97907298--97907561 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
97907288 AAAAATTAAA
* * * * *
97907298 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
97907361 GCCCCG
66 GCCCCG
* *
97907367 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
97907432 GTCTTG
66 GCCCCG
* * *
97907438 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
97907501 TGCCCCG
65 TGCCCCG
*
97907508 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
97907562 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:97907519 original size:70 final size:69
Alignment explanation
Indices: 97907298--97907561 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
97907288 AAAAATTAAA
* ** * * *
97907298 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
97907363 CCCG
66 CCCG
* * *
97907367 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
97907432 GTCTTG
64 GCCCCG
* *
97907438 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
97907503 CCCCG
65 CCCCG
*
97907508 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
97907562 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:97907544 original size:263 final size:257
Alignment explanation
Indices: 97907136--97907728 Score: 1042
Period size: 257 Copynumber: 2.3 Consensus size: 257
97907126 ACAACGTAAA
* * * * * *
97907136 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
97907201 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
97907266 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
97907331 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
97907396 TGATT
253 TGATT
97907401 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
97907466 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
97907531 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
97907596 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
97907658 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
97907723 TTGATT
66 TTGATT
97907729 TTCCTTGAAA
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 130 0.41
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:97916540 original size:39 final size:37
Alignment explanation
Indices: 97916443--97916540 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
97916433 TATGGTATTT
* * * *
97916443 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
97916479 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
97916518 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
97916541 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:97917074 original size:16 final size:16
Alignment explanation
Indices: 97917055--97917139 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
97917045 TTTTTCTTCT
97917055 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
97917071 TTTTTTTTGGG-TAGG
1 TTTTTTTTGGGTTAGG
*
97917086 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
** * *
97917098 TTTTTTTT-TCTTTGT
1 TTTTTTTTGGGTTAGG
97917113 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
97917129 TTTTTTTTGGG
1 TTTTTTTTGGG
97917140 GGCTTAATGG
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
13 2 0.04
14 1 0.02
15 17 0.30
16 28 0.50
ACGTcount: A:0.04, C:0.04, G:0.22, T:0.71
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:97917429 original size:33 final size:33
Alignment explanation
Indices: 97917356--97917467 Score: 88
Period size: 33 Copynumber: 3.4 Consensus size: 33
97917346 ATATGTATAT
* * *
97917356 GTGTAAGACCATAGCTGGGCTATGGCATCCTGA
1 GTGTAAGACCATAACTGGGCTATGACATACTGA
*
97917389 -TGATAAGACCATAACTGGGTTATGACATTAC-GA
1 GTG-TAAGACCATAACTGGGCTATGACA-TACTGA
** * *
97917422 GTGTAAGACCATGGCAGGGCCATGACAATA-T-A
1 GTGTAAGACCATAACTGGGCTATGAC-ATACTGA
97917454 CGTGTAAGACCATA
1 -GTGTAAGACCATA
97917468 GTTGGACTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
32 3 0.05
33 55 0.87
34 5 0.08
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (33 bp):
GTGTAAGACCATAACTGGGCTATGACATACTGA
Found at i:97917912 original size:2 final size:2
Alignment explanation
Indices: 97917905--97917934 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
97917895 AAAATGATGC
97917905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97917935 GTTTGTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97919151 original size:21 final size:21
Alignment explanation
Indices: 97919125--97919164 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97919115 CAACGTGGCA
*
97919125 AGTTAACTGGCCACATCAGTT
1 AGTTAACTGCCCACATCAGTT
*
97919146 AGTTAACTTCCCACATCAG
1 AGTTAACTGCCCACATCAG
97919165 CAGTCCCGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (21 bp):
AGTTAACTGCCCACATCAGTT
Done.