Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 327 of 345
Found at i:97919266 original size:30 final size:31
Alignment explanation
Indices: 97919198--97919269 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
97919188 AAACTATTAA
* *
97919198 TTAGTGACTGTTTTGTCATTTTTTTTATAACG
1 TTAGTGACTGTTTTGT-ATATTTTTTATAAAG
*
97919230 TTAGTGATTGTTTTGT-TATTTTTTA-AAAG
1 TTAGTGACTGTTTTGTATATTTTTTATAAAG
97919259 TTGAGTGACTG
1 TT-AGTGACTG
97919270 AAATGAAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 5 0.14
30 15 0.43
32 15 0.43
ACGTcount: A:0.21, C:0.06, G:0.19, T:0.54
Consensus pattern (31 bp):
TTAGTGACTGTTTTGTATATTTTTTATAAAG
Found at i:97930512 original size:22 final size:23
Alignment explanation
Indices: 97930466--97930514 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
97930456 TGTGATGACG
97930466 TTATCTTATAAATATGCATGAAT
1 TTATCTTATAAATATGCATGAAT
*
97930489 TTATCTTGA-AAATATG-TTGAAT
1 TTATCTT-ATAAATATGCATGAAT
97930511 TTAT
1 TTAT
97930515 TTGGTTGATG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 14 0.58
24 1 0.04
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (23 bp):
TTATCTTATAAATATGCATGAAT
Found at i:97938077 original size:14 final size:14
Alignment explanation
Indices: 97938058--97938085 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97938048 ACCCTAGTAG
97938058 TAATTAACAAGAAA
1 TAATTAACAAGAAA
97938072 TAATTAACAAGAAA
1 TAATTAACAAGAAA
97938086 GTCACTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
TAATTAACAAGAAA
Found at i:97941834 original size:23 final size:22
Alignment explanation
Indices: 97941808--97941861 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
97941798 TATTATTATT
*
97941808 TAATATTTACAAGTCTAGTTTAG
1 TAATATTTA-AAGTATAGTTTAG
* *
97941831 TAATATATTAAATTATGGTTTAG
1 TAATAT-TTAAAGTATAGTTTAG
97941854 TAAT-TTTA
1 TAATATTTA
97941862 TTGAATTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.11
22 1 0.04
23 20 0.74
24 3 0.11
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TAATATTTAAAGTATAGTTTAG
Found at i:97942275 original size:27 final size:27
Alignment explanation
Indices: 97942237--97942289 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
97942227 TTTTTGTCTT
97942237 TGTCAGGTAAGTTCATATGAGACTTAA
1 TGTCAGGTAAGTTCATATGAGACTTAA
97942264 TGTCAGGTAAGTTCATATGAGACTTA
1 TGTCAGGTAAGTTCATATGAGACTTA
97942290 CTTTATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (27 bp):
TGTCAGGTAAGTTCATATGAGACTTAA
Found at i:97946692 original size:49 final size:49
Alignment explanation
Indices: 97946620--97946715 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
97946610 ATAAGTATAT
*
97946620 ATTCCTAACCGCTATCAGACGTACTAACGTCCAAAGTGTGAATACTGTA
1 ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTGAATACTGTA
* *
97946669 ATTCCTAACCGCTATCGGACGTACTAAAGTCCAGAGTGTGAATACTG
1 ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTGAATACTG
97946716 CAACTAAAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (49 bp):
ATTCCTAACCGCTATCAGACGTACTAAAGTCCAAAGTGTGAATACTGTA
Found at i:97951535 original size:28 final size:28
Alignment explanation
Indices: 97951405--97951535 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 28
97951395 GGCTATGTGC
* * *
97951405 GGCACTTAGTGTGTGAGACATTGATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
*
97951433 GGCACTTAGTTTGCG-GACATTCATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
97951460 GGCACTTAGTATGC-AGACATTCATTAT
1 GGCACTTAGTATGCGAGACATTCATTAT
* * *
97951487 GGCATTTAGTATGCG-GAACATTGATTGT
1 GGCACTTAGTATGCGAG-ACATTCATTAT
*
97951515 GGCACTTAGTCTGCGAGACAT
1 GGCACTTAGTATGCGAGACAT
97951536 CGAGTATGTG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
27 50 0.56
28 39 0.43
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (28 bp):
GGCACTTAGTATGCGAGACATTCATTAT
Found at i:97953074 original size:20 final size:20
Alignment explanation
Indices: 97953031--97953075 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97953021 CCGTGTGGTG
* * *
97953031 GCCTGGGACATGCCTATGTG
1 GCCTGGAACATGCCCATGTA
*
97953051 GCCTGGAACATGCCCGTGTA
1 GCCTGGAACATGCCCATGTA
97953071 GCCTG
1 GCCTG
97953076 CCTATGGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (20 bp):
GCCTGGAACATGCCCATGTA
Found at i:97953730 original size:18 final size:20
Alignment explanation
Indices: 97953688--97953724 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97953678 ATATTTTATG
*
97953688 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
97953707 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
97953725 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:97953742 original size:11 final size:11
Alignment explanation
Indices: 97953722--97953756 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
97953712 TTTAATGAGA
*
97953722 TATTTTATTAT
1 TATTTCATTAT
97953733 TATTTCATTAT
1 TATTTCATTAT
97953744 TATTTCATTAT
1 TATTTCATTAT
97953755 TA
1 TA
97953757 ATTATTTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTTCATTAT
Found at i:97954649 original size:13 final size:13
Alignment explanation
Indices: 97954631--97954658 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97954621 AGAACAGGGG
97954631 TAGCTTTAAAGAA
1 TAGCTTTAAAGAA
97954644 TAGCTTTAAAGAA
1 TAGCTTTAAAGAA
97954657 TA
1 TA
97954659 AACTGTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (13 bp):
TAGCTTTAAAGAA
Found at i:97955960 original size:46 final size:46
Alignment explanation
Indices: 97955905--97956132 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
97955895 AGTGTGCTCT
97955905 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97955951 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97955997 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
97956043 GTGATATGAAATGAACAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
97956089 ATGACA-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97956133 TCATGTCAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97957612 original size:37 final size:39
Alignment explanation
Indices: 97957527--97957621 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 39
97957517 CACCTGAATA
*
97957527 GCAACCAACGTCTCATCGGATAGTTCGAAGCAAATAAGTG
1 GCAACCAACGTCTCATCGGATAGTCCGAAGC-AATAAGTG
* * *
97957567 ACGACCAACGTCTCATCGGCTAAG-CCGAAGC-A-AAGTG
1 GCAACCAACGTCTCATCGGAT-AGTCCGAAGCAATAAGTG
*
97957604 GCAACCAACGCCTCATCG
1 GCAACCAACGTCTCATCG
97957622 AATCTATCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 20 0.43
38 1 0.02
40 24 0.51
41 2 0.04
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (39 bp):
GCAACCAACGTCTCATCGGATAGTCCGAAGCAATAAGTG
Found at i:97958800 original size:3 final size:3
Alignment explanation
Indices: 97958786--97958857 Score: 135
Period size: 3 Copynumber: 23.7 Consensus size: 3
97958776 TTATCTCAAT
97958786 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97958832 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
97958858 GTAAGTAAAT
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 65 0.96
4 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:97964274 original size:20 final size:19
Alignment explanation
Indices: 97964248--97964299 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
97964238 GGGGCACACG
97964248 GCCGTGTGGCCTAGG-ACAT
1 GCCGTGTGGCCT-GGAACAT
97964267 GCCCGTGTGGCCTGGAACAT
1 G-CCGTGTGGCCTGGAACAT
97964287 GCCGTGTGGCCTG
1 GCCGTGTGGCCTG
97964300 CCCGTGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.12, C:0.29, G:0.38, T:0.21
Consensus pattern (19 bp):
GCCGTGTGGCCTGGAACAT
Found at i:97966471 original size:3 final size:3
Alignment explanation
Indices: 97966457--97966552 Score: 147
Period size: 3 Copynumber: 31.0 Consensus size: 3
97966447 TTATCTCAAT
97966457 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
97966503 TAA TAA TAA TAA TTA TAA TAA TTA TAA TAA TAA TAA TAA GTAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -T-AA TAA
97966550 TAA
1 TAA
97966553 ATAAGTAAAT
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
3 79 0.92
4 5 0.06
5 2 0.02
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:97967166 original size:17 final size:19
Alignment explanation
Indices: 97967124--97967167 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
97967114 ATGAAATTTT
*
97967124 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
97967143 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
97967161 AA-TATTA
1 AATTATTA
97967168 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:97968993 original size:28 final size:28
Alignment explanation
Indices: 97968961--97969029 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97968951 GCGTAGATCA
97968961 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97968989 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97969017 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97969030 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97971272 original size:22 final size:22
Alignment explanation
Indices: 97971230--97971274 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
97971220 ATCAATGAGT
*
97971230 AAACCTTATCGATCCTCGTCGA
1 AAACCTTATCAATCCTCGTCGA
* *
97971252 AAACCTTATCAATCTTTGTCGA
1 AAACCTTATCAATCCTCGTCGA
97971274 A
1 A
97971275 TAAATTCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (22 bp):
AAACCTTATCAATCCTCGTCGA
Found at i:97981069 original size:11 final size:11
Alignment explanation
Indices: 97981024--97981130 Score: 53
Period size: 11 Copynumber: 9.3 Consensus size: 11
97981014 TAGATAAACT
97981024 TTAAATTAA-A
1 TTAAATTAATA
97981034 TTTAATATTAATA
1 -TTAA-ATTAATA
*
97981047 TAATCAATTTAATA
1 T--T-AAATTAATA
97981061 TTAAATTAATA
1 TTAAATTAATA
*
97981072 --AAA-TACTA
1 TTAAATTAATA
*
97981080 TTAAGATAAATA
1 TTAA-ATTAATA
97981092 TTAAATTAA-A
1 TTAAATTAATA
97981102 TTTAATATTAGAATA
1 -TTAA-ATT--AATA
*
97981117 TTAAAATAATA
1 TTAAATTAATA
97981128 TTA
1 TTA
97981131 TTTTTGAAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 28
0.68 0.06 0.25
Matches are distributed among these distances:
8 4 0.05
9 3 0.04
10 3 0.04
11 28 0.37
12 17 0.23
13 3 0.04
14 14 0.19
15 3 0.04
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
TTAAATTAATA
Found at i:97996115 original size:23 final size:23
Alignment explanation
Indices: 97996088--97996134 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
97996078 GTTAAATGTT
*
97996088 CACAAAAGTTGGGTGAACAATCA
1 CACAAAAGCTGGGTGAACAATCA
97996111 CACAAAAGCTGGGTGAACAATCA
1 CACAAAAGCTGGGTGAACAATCA
97996134 C
1 C
97996135 TGAGCATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (23 bp):
CACAAAAGCTGGGTGAACAATCA
Found at i:98000357 original size:45 final size:44
Alignment explanation
Indices: 98000306--98000518 Score: 221
Period size: 45 Copynumber: 4.7 Consensus size: 44
98000296 AGTTATGGTT
98000306 GGTAAGCTCTTTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTTT-GAGCTGAACAGTAAGCTCTATTGAGCTGAAAC
* *
98000351 GGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTG-AAT
1 GGTAAGCTCT-TTGAGCTG-AACAGTAAGCTCTATTGAGCTGAAAC
**
98000396 GGTAAGCTTCAATGAGCTGAAACAGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGC-TCTTTGAGCTG-AACAGTAAGCTCTATTGAGCTGAAAC
* * * * * **
98000442 GGTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGGTGAAGT
1 GGTAAGCTCT-TTGAGCTGAACAGTAAGCTCTATTGAGCTGAAAC
* * *
98000487 AGTAAGCTCTTACGAGCTAAATCAGTAAGCTC
1 GGTAAGCTCTT-TGAGCTGAA-CAGTAAGCTC
98000519 ATACGAGCTG
Statistics
Matches: 143, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
44 1 0.01
45 93 0.65
46 49 0.34
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
GGTAAGCTCTTTGAGCTGAACAGTAAGCTCTATTGAGCTGAAAC
Found at i:98000359 original size:23 final size:23
Alignment explanation
Indices: 98000306--98000472 Score: 245
Period size: 23 Copynumber: 7.4 Consensus size: 23
98000296 AGTTATGGTT
98000306 GGTAAGCTCT-TTCGAGCTG-AAC
1 GGTAAGCTCTATT-GAGCTGAAAC
*
98000328 AGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
98000351 GGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
*
98000374 GGTAAGCTCTATTGAGCTG-AAT
1 GGTAAGCTCTATTGAGCTGAAAC
*
98000396 GGTAAGCT-TCAATGAGCTGAAAC
1 GGTAAGCTCT-ATTGAGCTGAAAC
*
98000419 AGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
98000442 GGTAAGCTCTATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTGAAAC
98000464 GGTAAGCTC
1 GGTAAGCTC
98000473 CAATGAGGTG
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
21 1 0.01
22 46 0.35
23 84 0.64
24 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
GGTAAGCTCTATTGAGCTGAAAC
Found at i:98000504 original size:68 final size:68
Alignment explanation
Indices: 98000306--98000496 Score: 276
Period size: 68 Copynumber: 2.8 Consensus size: 68
98000296 AGTTATGGTT
* * * *
98000306 GGTAAGCTCT-TTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTG
1 GGTAAGCTCTATT-GAGCTGAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATTGAGCTG
98000370 AAAC
65 AAAC
* *
98000374 GGTAAGCTCTATTGAGCTGAATGGTAAGCTTCAATGAGCTGAAACAGTAAGCTCTATTGAGCTGA
1 GGTAAGCTCTATTGAGCTGAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATTGAGCTGA
98000439 AAC
66 AAC
* * **
98000442 GGTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGGTGAAGTAGTAAGCTCT
1 GGTAAGCTCTATTGAGCTGAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCT
98000497 TACGAGCTAA
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
68 108 0.98
69 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (68 bp):
GGTAAGCTCTATTGAGCTGAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATTGAGCTGA
AAC
Found at i:98000515 original size:68 final size:68
Alignment explanation
Indices: 98000307--98000518 Score: 241
Period size: 68 Copynumber: 3.1 Consensus size: 68
98000297 GTTATGGTTG
* * * * * *
98000307 GTAAGCTCT-TTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTGA
1 GTAAGCTCTATT-GAGCTAAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATCGAGCTGA
*
98000371 AACG
65 AACA
* * * *
98000375 GTAAGCTCTATTGAGCTGAATGGTAAGCTTCAATGAGCTGAAACAGTAAGCTCTATTGAGCTGAA
1 GTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATCGAGCTGAA
*
98000440 ACG
66 ACA
* **
98000443 GTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGGTGAAGTAGTAAGCTCT-TACGAGCT-A
1 GTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTAT-CGAGCTGA
98000506 AATCA
65 AA-CA
98000511 GTAAGCTC
1 GTAAGCTC
98000519 ATACGAGCTG
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
67 4 0.03
68 121 0.95
69 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (68 bp):
GTAAGCTCTATTGAGCTAAACGGTAAGCTCCAATGAGCTGAAACAGTAAGCTCTATCGAGCTGAA
ACA
Found at i:98003376 original size:17 final size:17
Alignment explanation
Indices: 98003340--98003379 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
98003330 TTAAAAAAAA
* *
98003340 TAAAAACATAATGCTTT
1 TAAAAACATAATGATAT
*
98003357 TAAAAACATAATTATAT
1 TAAAAACATAATGATAT
98003374 TAAAAA
1 TAAAAA
98003380 TGTTATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (17 bp):
TAAAAACATAATGATAT
Found at i:98003653 original size:16 final size:16
Alignment explanation
Indices: 98003632--98003682 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
98003622 TGAATTATTG
98003632 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* * **
98003648 ATTACAGCCCTATTAT
1 ATTACAACTCTATTCC
*
98003664 ATTACAACTGTATTCC
1 ATTACAACTCTATTCC
98003680 ATT
1 ATT
98003683 CTAACGAACC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:98006744 original size:7 final size:7
Alignment explanation
Indices: 98006724--98006785 Score: 88
Period size: 7 Copynumber: 8.9 Consensus size: 7
98006714 GGTTTGTGGT
98006724 GTGATTG
1 GTGATTG
* *
98006731 CTCATTG
1 GTGATTG
*
98006738 ATGATTG
1 GTGATTG
98006745 GTGATTG
1 GTGATTG
*
98006752 GTAATTG
1 GTGATTG
98006759 GTGATTG
1 GTGATTG
98006766 GTGATTG
1 GTGATTG
98006773 GTGATTG
1 GTGATTG
98006780 GTGATT
1 GTGATT
98006786 AGTAAAAAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.18, C:0.03, G:0.35, T:0.44
Consensus pattern (7 bp):
GTGATTG
Found at i:98012139 original size:34 final size:34
Alignment explanation
Indices: 98012096--98012164 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
98012086 AATAATCAGC
*
98012096 AAAGAATACTTCAGTGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
98012130 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
98012164 A
1 A
98012165 TACTTGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (34 bp):
AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
Found at i:98016519 original size:149 final size:149
Alignment explanation
Indices: 98016249--98016552 Score: 563
Period size: 149 Copynumber: 2.0 Consensus size: 149
98016239 ATCAACTAAA
*
98016249 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAATTTTCTTC
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
98016314 ACCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 ACCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
98016379 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
* * *
98016398 AACTAAATACGTACACCTTTTAAGCTTGTTTCTTATTCATGGCCGTAACATCATAAACTTTCTTT
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
*
98016463 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 ACCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
98016528 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
98016547 AACTAA
1 AACTAA
98016553 TGAAGGTACA
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (149 bp):
AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
ACCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
TACTTTGATAAATCAGAAC
Found at i:98018352 original size:77 final size:77
Alignment explanation
Indices: 98018262--98018490 Score: 287
Period size: 79 Copynumber: 2.9 Consensus size: 77
98018252 CAATTCTCCA
98018262 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
*
98018327 TCATGTTTATTC
66 TCATGTTCATTC
* * * * *
98018339 TATGGTATTAAATGTTTTTGGTTCTTTCCGAAGAAGTGTTTTCTTTTCCTGGTTGAAATCTTGCT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTT-TTTT-CTGGTCGAATTCTTGCT
*
98018404 TCTCTTGTTCATTC
64 TCTCATGTTCATTC
* * * *
98018418 CATGGTATCAGATGTTTTTGGTTCCTTACTAAGAAGAGTTTTTTTTTTTTTCTTGGTCGAATTCT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAG-A-AG---TGTTTTTTTTC-TGGTCGAATTCT
98018483 TGCTTCTC
60 TGCTTCTC
98018491 CTATTCTATT
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
77 39 0.30
78 4 0.03
79 54 0.42
80 1 0.01
81 2 0.02
82 1 0.01
83 22 0.17
84 5 0.04
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (77 bp):
CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
TCATGTTCATTC
Found at i:98020229 original size:25 final size:24
Alignment explanation
Indices: 98020200--98020248 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
98020190 AAATAAAAAA
*
98020200 ATTT-AAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
98020225 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
98020249 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 7 0.32
26 8 0.36
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:98027051 original size:19 final size:18
Alignment explanation
Indices: 98027022--98027071 Score: 82
Period size: 19 Copynumber: 2.7 Consensus size: 18
98027012 GTATATATTT
98027022 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
98027040 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
98027059 TAAATTTTATTTA
1 TAAA-TTTATTTA
98027072 TATTCTAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.17
19 24 0.80
20 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:98027145 original size:41 final size:42
Alignment explanation
Indices: 98027086--98027172 Score: 149
Period size: 41 Copynumber: 2.1 Consensus size: 42
98027076 CTAGAAATAT
98027086 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
* *
98027128 TTTT-TTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
98027169 TTTT
1 TTTT
98027173 CTTAATTAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 39 0.91
42 4 0.09
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:98029369 original size:192 final size:192
Alignment explanation
Indices: 98029042--98029428 Score: 756
Period size: 192 Copynumber: 2.0 Consensus size: 192
98029032 ATTGATTGTG
98029042 ATGTTTGGGGACCTTCAAAAGTATCGACTTTTTCAGGAAAACGTTGGTTTGTCACATTTATTGAT
1 ATGTTTGGGGACCTTCAAAAGTATCGACTTTTTCAGGAAAACGTTGGTTTGTCACATTTATTGAT
98029107 GATCATACTCGACTTTGTTGGGTGTTTTTAATAAAAGGTAAGTCTGAAGTTAAAAATGTGTTTCA
66 GATCATACTCGACTTTGTTGGGTGTTTTTAATAAAAGGTAAGTCTGAAGTTAAAAATGTGTTTCA
98029172 GTCGTTTTATACGATGGTGAAAACACAATTTGGTGTGAAAATAGAAGTATTTCGGACTAACA
131 GTCGTTTTATACGATGGTGAAAACACAATTTGGTGTGAAAATAGAAGTATTTCGGACTAACA
*
98029234 ATGTTTGGGGACCTTCAAGAGTATCGACTTTTTCAGGAAAACGTTGGTTTGTCACATTTATTGAT
1 ATGTTTGGGGACCTTCAAAAGTATCGACTTTTTCAGGAAAACGTTGGTTTGTCACATTTATTGAT
98029299 GATCATACTCGACTTTGTTGGGTGTTTTTAATAAAAGGTAAGTCTGAAGTTAAAAATGTGTTTCA
66 GATCATACTCGACTTTGTTGGGTGTTTTTAATAAAAGGTAAGTCTGAAGTTAAAAATGTGTTTCA
*
98029364 GTCGTTTTATACGATGGTGAAAACACAATTTGGTGTGAAAATAGAAGTATTTCGGACTGACA
131 GTCGTTTTATACGATGGTGAAAACACAATTTGGTGTGAAAATAGAAGTATTTCGGACTAACA
98029426 ATG
1 ATG
98029429 GTAGGAATTT
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 193 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.36
Consensus pattern (192 bp):
ATGTTTGGGGACCTTCAAAAGTATCGACTTTTTCAGGAAAACGTTGGTTTGTCACATTTATTGAT
GATCATACTCGACTTTGTTGGGTGTTTTTAATAAAAGGTAAGTCTGAAGTTAAAAATGTGTTTCA
GTCGTTTTATACGATGGTGAAAACACAATTTGGTGTGAAAATAGAAGTATTTCGGACTAACA
Found at i:98032013 original size:42 final size:42
Alignment explanation
Indices: 98031961--98032049 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
98031951 CTAGGAATGT
* *
98031961 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
*
98032003 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
98032045 TTTTC
1 TTTTC
98032050 CCAATTAAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:98042832 original size:24 final size:24
Alignment explanation
Indices: 98042800--98042873 Score: 148
Period size: 24 Copynumber: 3.1 Consensus size: 24
98042790 AGAGGAACAG
98042800 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
98042824 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
98042848 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
98042872 TC
1 TC
98042874 TTGCCAAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (24 bp):
TCGAGTACCAAGTAGTTTGAAAGT
Found at i:98047251 original size:20 final size:20
Alignment explanation
Indices: 98047215--98047253 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98047205 TTCTTCCGTT
*
98047215 AAATTTATTTTTATTTTTTA
1 AAATTTATTTTCATTTTTTA
*
98047235 AAATTTATTTTCCTTTTTT
1 AAATTTATTTTCATTTTTT
98047254 TCCTCTCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (20 bp):
AAATTTATTTTCATTTTTTA
Found at i:98048487 original size:30 final size:30
Alignment explanation
Indices: 98048451--98048508 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
98048441 TCGAGAAAGA
*
98048451 TCTTAAATATTAATATTGATTCTAAGTTAG
1 TCTTAAATATTAATATTGATACTAAGTTAG
98048481 TCTTAAATATTAATATTGATACTAAGTT
1 TCTTAAATATTAATATTGATACTAAGTT
98048509 TAATTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (30 bp):
TCTTAAATATTAATATTGATACTAAGTTAG
Found at i:98050407 original size:21 final size:20
Alignment explanation
Indices: 98050379--98050417 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
98050369 CAAACCATGT
98050379 ATCAAATTTCAAGTATATGA
1 ATCAAATTTCAAGTATATGA
*
98050399 ATCATAATTTCAATTATAT
1 ATCA-AATTTCAAGTATAT
98050418 TTTCATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
ATCAAATTTCAAGTATATGA
Found at i:98051629 original size:26 final size:26
Alignment explanation
Indices: 98051593--98051728 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
98051583 TGATACAAAT
98051593 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98051619 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98051645 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98051671 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
98051697 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
98051723 TGATAA
1 TGATAA
98051729 GAATTTCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:98053244 original size:26 final size:26
Alignment explanation
Indices: 98053215--98053267 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
98053205 TTTACAGTTT
98053215 TACCCCTAGGAGATAAATT-ACTGAAA
1 TACCCCTAGG-GATAAATTGACTGAAA
* *
98053241 TACCCCTAGGGTTAAATTGACTTAAA
1 TACCCCTAGGGATAAATTGACTGAAA
98053267 T
1 T
98053268 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACTGAAA
Found at i:98055125 original size:18 final size:17
Alignment explanation
Indices: 98055102--98055146 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
98055092 ATTTTACCCA
98055102 AAAATTATTTAAAACTAT
1 AAAATTATTT-AAACTAT
**
98055120 AAAATTATTTTTACTAT
1 AAAATTATTTAAACTAT
98055137 AAAATTATTT
1 AAAATTATTT
98055147 TTTCTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATTATTTAAACTAT
Found at i:98055162 original size:15 final size:17
Alignment explanation
Indices: 98055115--98055164 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
98055105 ATTATTTAAA
98055115 ACTATAAAATTATTTTT
1 ACTATAAAATTATTTTT
98055132 ACTATAAAATTATTTTT
1 ACTATAAAATTATTTTT
*
98055149 TCTAT-AAA-TATTTTT
1 ACTATAAAATTATTTTT
98055164 A
1 A
98055165 TTTTTCGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.23
16 3 0.10
17 21 0.68
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (17 bp):
ACTATAAAATTATTTTT
Found at i:98059990 original size:11 final size:11
Alignment explanation
Indices: 98059974--98060016 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
98059964 TGAAATCAAT
98059974 TAATTCAACTA
1 TAATTCAACTA
*
98059985 TAATTCAATCAA
1 TAATTCAA-CTA
98059997 TTAATTCAACTA
1 -TAATTCAACTA
98060009 TAATTCAA
1 TAATTCAA
98060017 GAGATTTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.57
12 4 0.14
13 8 0.29
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATTCAACTA
Found at i:98059997 original size:24 final size:24
Alignment explanation
Indices: 98059967--98060016 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
98059957 TAGTGATTGA
98059967 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
98059991 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
98060015 AA
1 AA
98060017 GAGATTTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (24 bp):
AATCAATTAATTCAACTATAATTC
Found at i:98060240 original size:19 final size:20
Alignment explanation
Indices: 98060195--98060243 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
98060185 TATATTACTC
*
98060195 TAATAAAATAGTAAAATATT
1 TAATAATATAGTAAAATATT
98060215 TAATAATATAGT-AAAT-TT
1 TAATAATATAGTAAAATATT
98060233 TAATTAATATA
1 TAA-TAATATA
98060244 TAAGCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
TAATAATATAGTAAAATATT
Found at i:98060705 original size:2 final size:2
Alignment explanation
Indices: 98060698--98060731 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
98060688 AAGCCCCTCA
* *
98060698 CT CT CT CT CT CC CT CC CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
98060732 TTCCCTCCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:98060719 original size:12 final size:12
Alignment explanation
Indices: 98060702--98060754 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
98060692 CCCTCACTCT
98060702 CTCTCTCCCTCC
1 CTCTCTCCCTCC
*
98060714 CTCTCTCTCTCTCT
1 CTCTCTC-C-CTCC
*
98060728 CTCTTTCCCTCC
1 CTCTCTCCCTCC
*
98060740 CTCCCTCCCTCC
1 CTCTCTCCCTCC
98060752 CTC
1 CTC
98060755 CCTCTCACAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
12 23 0.68
13 2 0.06
14 9 0.26
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (12 bp):
CTCTCTCCCTCC
Found at i:98060740 original size:4 final size:4
Alignment explanation
Indices: 98060733--98060758 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
98060723 TCTCTCTCTT
98060733 TCCC TCCC TCCC TCCC TCCC TCCC TC
1 TCCC TCCC TCCC TCCC TCCC TCCC TC
98060759 TCACACACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.00, T:0.27
Consensus pattern (4 bp):
TCCC
Found at i:98060744 original size:8 final size:8
Alignment explanation
Indices: 98060692--98060758 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
98060682 AGCTTCAAGC
*
98060692 CCCTCACT
1 CCCTCCCT
* *
98060700 CTCTCTCT
1 CCCTCCCT
98060708 CCCTCCCT
1 CCCTCCCT
*
98060716 CTCTCTCTCT
1 C-C-CTCCCT
* **
98060726 CTCTCTTT
1 CCCTCCCT
98060734 CCCTCCCT
1 CCCTCCCT
98060742 CCCTCCCT
1 CCCTCCCT
98060750 CCCTCCCT
1 CCCTCCCT
98060758 C
1 C
98060759 TCACACACAC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 40 0.85
9 1 0.02
10 6 0.13
ACGTcount: A:0.01, C:0.63, G:0.00, T:0.36
Consensus pattern (8 bp):
CCCTCCCT
Found at i:98060755 original size:12 final size:12
Alignment explanation
Indices: 98060692--98060758 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
98060682 AGCTTCAAGC
* *
98060692 CCCTCACTCTCT
1 CCCTCCCTCCCT
*
98060704 CTCTCCCTCCCT
1 CCCTCCCTCCCT
* *
98060716 CTCTCTCTCTCTCT
1 C-C-CTCCCTCCCT
**
98060730 CTTTCCCTCCCT
1 CCCTCCCTCCCT
98060742 CCCTCCCTCCCT
1 CCCTCCCTCCCT
98060754 CCCTC
1 CCCTC
98060759 TCACACACAC
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
12 32 0.78
14 9 0.22
ACGTcount: A:0.01, C:0.63, G:0.00, T:0.36
Consensus pattern (12 bp):
CCCTCCCTCCCT
Found at i:98060767 original size:2 final size:2
Alignment explanation
Indices: 98060760--98060788 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98060750 CCCTCCCTCT
98060760 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
98060789 TCTCTCTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:98064451 original size:47 final size:47
Alignment explanation
Indices: 98064392--98064879 Score: 769
Period size: 47 Copynumber: 10.4 Consensus size: 47
98064382 GATGTACAAG
* * * *
98064392 GTGTGTATATGTGATAAGGCCTAATGGGCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
98064439 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
98064486 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
98064533 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* ** *
98064580 GTGTGTATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
98064627 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
98064674 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
98064721 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * * *
98064768 GTGTATATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
98064815 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
98064862 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
98064880 TCCCGAAGGG
Statistics
Matches: 403, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 403 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:98064663 original size:22 final size:22
Alignment explanation
Indices: 98064635--98064710 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
98064625 AAGTGTATAT
98064635 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
98064657 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
98064681 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
98064704 ATGTGAT
1 ATGTGAT
98064711 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:98067046 original size:10 final size:10
Alignment explanation
Indices: 98067027--98067076 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
98067017 TTAAATTCTA
98067027 AAAGATAAAT
1 AAAGATAAAT
98067037 ACAA-ATAAAT
1 A-AAGATAAAT
* *
98067047 AAATATAATT
1 AAAGATAAAT
98067057 AAAGATAAAT
1 AAAGATAAAT
98067067 AAAGATAAAT
1 AAAGATAAAT
98067077 GCTAAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:98068074 original size:76 final size:74
Alignment explanation
Indices: 98067948--98068101 Score: 236
Period size: 76 Copynumber: 2.1 Consensus size: 74
98067938 ATCAGAAACA
* * *
98067948 TGGTTTCGAAGCCACCAAATTCGGCGAGTAAGTTTGTAAATATTATTATTAGTTGTAACAACCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTTGTAACAACCCT
98068013 ATTTTTTTCAG
66 A--TTTTTCAG
* **
98068024 TGGTTTCGAGGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTTGTAACAGTCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTTGTAACAACCCT
98068089 ATTTTTCAG
66 ATTTTTCAG
98068098 TGGT
1 TGGT
98068102 GTCGGAAACA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
74 12 0.17
76 60 0.83
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (74 bp):
TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTTGTAACAACCCT
ATTTTTCAG
Found at i:98069574 original size:21 final size:21
Alignment explanation
Indices: 98069548--98069610 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
98069538 TTGGGTGGAA
*
98069548 CAGCTCTTACCAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
98069569 CAGCTCTTACGAGCTTTTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
98069590 TAGCTCTTACGAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
98069611 GGCGTATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.14, C:0.27, G:0.17, T:0.41
Consensus pattern (21 bp):
CAGCTCTTACGAGCTTCTGTT
Found at i:98072387 original size:85 final size:81
Alignment explanation
Indices: 98072270--98072431 Score: 243
Period size: 81 Copynumber: 2.0 Consensus size: 81
98072260 TTGATGTCTC
***
98072270 AAATCTATACCAAAAAAGGGTGAGAGTTTTTTTTTTTTTTTGAGTTCCAATGCAATGCCATAAAG
1 AAATCTATACCAAAAAAGGGTGAGA----ACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAG
98072335 AACTACTCTTGATAATTTCT
62 AACTACTCTTGATAATTTCT
* *
98072355 AAATCTATATCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCTAATGCAATGCCATAAAGAACT
1 AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
98072420 ACTCTTGATAAT
66 ACTCTTGATAAT
98072432 GATGTTTGGA
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
81 48 0.67
85 24 0.33
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (81 bp):
AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
ACTCTTGATAATTTCT
Found at i:98082952 original size:2 final size:2
Alignment explanation
Indices: 98082945--98082983 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98082935 AAAATAGATA
98082945 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98082984 CAACAGTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:98085024 original size:43 final size:42
Alignment explanation
Indices: 98084964--98085119 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 42
98084954 ATCTTCGATA
* *
98084964 TGTTTCCCTACTGCTTAGGGGGTTAATATCTGTAAATTTAGCC
1 TGTTACCCTACTGCTTAGGGGGTTAA-ATCTATAAATTTAGCC
* * ** *** * *
98085007 TATTACCCTACTGCTTAGGGGGTTAAAGCCCTTCGTCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAATCTATAAAT-TTAG-CC
*
98085051 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTTAGCC
1 TGTTACCCTACTGCTTAGGGGGTTAA-ATCTATAAATTTAGCC
*
98085094 TGTTACCCTACTGCTTTGGGGGTTAA
1 TGTTACCCTACTGCTTAGGGGGTTAA
98085120 GGCCCTTCGT
Statistics
Matches: 88, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 4 0.05
43 52 0.59
44 28 0.32
45 4 0.05
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (42 bp):
TGTTACCCTACTGCTTAGGGGGTTAAATCTATAAATTTAGCC
Found at i:98085120 original size:43 final size:42
Alignment explanation
Indices: 98084964--98085292 Score: 182
Period size: 44 Copynumber: 7.6 Consensus size: 42
98084954 ATCTTCGATA
* *
98084964 TGTTTCCCTACTGCTTAGGGGGTTAATATCTGTAAATTTAGCC
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCT-TAAATTTAGCC
* ** ** * *
98085007 TATTACCCTACTGCTTAGGGGGTTAAAGCCCTT-CGTCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTAAAT-TTAG-CC
*
98085051 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTTAGCC
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCT-TAAATTTAGCC
* ** ** * *
98085094 TGTTACCCTACTGCTTTGGGGGTTAAGGCCCTT-CGTCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAA-GATCTTAAAT-TTAG-CC
* * * * *
98085138 TGTTTCCCTACTGCTTAGGGAGATAAGATCTGT-AATTCAACC
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCT-TAAATTTAGCC
* * ** * *
98085180 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTT-CGTCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAA-GATCTTAAAT-TTAG-CC
* * * ** * *
98085224 TGCT-CCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACC
1 TGTTACC-CTACTGCTTAGGGGGTTAAGATCTTAAATTTAGCC
*
98085266 TGTTACCCTACTGCTTAGGGGTTTAAG
1 TGTTACCCTACTGCTTAGGGGGTTAAG
98085293 GTTCTTCGTC
Statistics
Matches: 207, Mismatches: 64, Indels: 31
0.69 0.21 0.10
Matches are distributed among these distances:
42 48 0.23
43 78 0.38
44 80 0.39
45 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (42 bp):
TGTTACCCTACTGCTTAGGGGGTTAAGATCTTAAATTTAGCC
Found at i:98085235 original size:86 final size:86
Alignment explanation
Indices: 98084915--98085399 Score: 623
Period size: 86 Copynumber: 5.6 Consensus size: 86
98084905 ATTTGATTTC
* * * *
98084915 CAGCCTGTTACCGTACTACTTAGGGGGTTAAGG-CCTATCATCTTCGATATGTTTCCCTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCT-TCGTCTTCGATCTGTTTCCCTACTGCT
* * *
98084979 TAGGGGGTTAATATCTGTAAATT
65 TAGGGAGATAAGATCTGT-AATT
* * *
98085002 TAGCCTATTACCCTACTGCTTAGGGGGTTAAAGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
* * *
98085067 AGGGGGTTAAGATCTATAAATT
66 AGGGAGATAAGATCTGT-AATT
* *
98085089 TAGCCTGTTACCCTACTGCTTTGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
98085154 AGGGAGATAAGATCTGTAATT
66 AGGGAGATAAGATCTGTAATT
* * ** *
98085175 CAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCC-CTACTGCT
*
98085239 TAGGGAGATAAGATCTGCAATT
65 TAGGGAGATAAGATCTGTAATT
* * ** * *
98085261 CAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGTTTCACTTCTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
*
98085326 AGGGAGATAAGATCTGCAATT
66 AGGGAGATAAGATCTGTAATT
* * * * *
98085347 CGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTTGATCTGTT
1 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTT
98085400 ACACCATTAT
Statistics
Matches: 362, Mismatches: 33, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
85 3 0.01
86 204 0.56
87 152 0.42
88 3 0.01
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (86 bp):
CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
AGGGAGATAAGATCTGTAATT
Found at i:98093479 original size:19 final size:18
Alignment explanation
Indices: 98093437--98093479 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
98093427 TCTTTTCGAG
* *
98093437 GAATTTAATGCACATGAT
1 GAATGTAATGCAAATGAT
98093455 GAAATGTAATGCAAATGAAT
1 G-AATGTAATGCAAATG-AT
98093475 GAATG
1 GAATG
98093480 CAAAAAGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 17 0.81
20 3 0.14
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (18 bp):
GAATGTAATGCAAATGAT
Found at i:98097350 original size:2 final size:2
Alignment explanation
Indices: 98097343--98097381 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
98097333 AAAATAGATA
98097343 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98097382 ACAGTCTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:98108658 original size:12 final size:11
Alignment explanation
Indices: 98108636--98108661 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
98108626 GAGAATTTCC
98108636 TTTTCTTTTTT
1 TTTTCTTTTTT
98108647 TTTTCTTTTTT
1 TTTTCTTTTTT
98108658 TTTT
1 TTTT
98108662 GTGGGGGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:98118572 original size:30 final size:30
Alignment explanation
Indices: 98118538--98118600 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
98118528 CAATGGAAGA
98118538 TAATTTTTAAACCAGCTTGAGGGGGAGTGT
1 TAATTTTTAAACCAGCTTGAGGGGGAGTGT
98118568 TAATTTTTAAACCAGCTTGAGGGGGAGTGT
1 TAATTTTTAAACCAGCTTGAGGGGGAGTGT
98118598 TAA
1 TAA
98118601 AAAGGAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33
Consensus pattern (30 bp):
TAATTTTTAAACCAGCTTGAGGGGGAGTGT
Found at i:98126189 original size:22 final size:21
Alignment explanation
Indices: 98126162--98126247 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 21
98126152 TTTTATTGTT
*
98126162 TTATATATTTTAATATGTAAAA
1 TTATATATATTAATAT-TAAAA
98126184 TTATATAAATATTAATA-TAAATA
1 TTATAT--ATATTAATATTAAA-A
* *
98126207 TTTTATTATGTTAATATTAAAA
1 TTATA-TATATTAATATTAAAA
98126229 TTATACT-TATTAATATTAA
1 TTATA-TATATTAATATTAA
98126248 TATAAAATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
21 11 0.21
22 24 0.45
23 9 0.17
24 9 0.17
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (21 bp):
TTATATATATTAATATTAAAA
Found at i:98126250 original size:43 final size:45
Alignment explanation
Indices: 98126160--98126250 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 45
98126150 TATTTTATTG
*
98126160 TTTTATATATTTTAATATGTAAAATTATATAAATATTAATATAAATA
1 TTTTATATATGTTAATATGTAAAATTATAT--ATATTAATATAAATA
*
98126207 TTTTAT-TATGTTAATAT-TAAAATTATACT-TATTAATATTAATA
1 TTTTATATATGTTAATATGTAAAATTATA-TATATTAATATAAATA
98126250 T
1 T
98126251 AAAATTATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 14 0.34
45 10 0.24
46 11 0.27
47 6 0.15
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (45 bp):
TTTTATATATGTTAATATGTAAAATTATATATATTAATATAAATA
Found at i:98126267 original size:26 final size:26
Alignment explanation
Indices: 98126191--98126267 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
98126181 AAATTATATA
98126191 AATATTAATAT-AAA-TAT-TTTATT
1 AATATTAATATAAAATTATATTTATT
* *
98126214 -ATGTTAATATTAAAATTATACTTATT
1 AATATTAATA-TAAAATTATATTTATT
*
98126240 AATATTAATATAAAATTATATTTTTT
1 AATATTAATATAAAATTATATTTATT
98126266 AA
1 AA
98126268 AATTGTAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
22 8 0.18
23 1 0.02
24 3 0.07
25 3 0.07
26 21 0.48
27 8 0.18
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (26 bp):
AATATTAATATAAAATTATATTTATT
Found at i:98131465 original size:21 final size:22
Alignment explanation
Indices: 98131420--98131465 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
98131410 TTTACTAATT
*
98131420 ATTTAAAATTGTATTATTATCC
1 ATTTAAAATTGTATTATTATAC
* *
98131442 ATTTTAAATTGT-TTGTTATAC
1 ATTTAAAATTGTATTATTATAC
98131463 ATT
1 ATT
98131466 ATGTGTACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.54
Consensus pattern (22 bp):
ATTTAAAATTGTATTATTATAC
Found at i:98131662 original size:2 final size:2
Alignment explanation
Indices: 98131655--98131689 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
98131645 TTTAAACTTT
98131655 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98131690 TTTAAAAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98132140 original size:26 final size:25
Alignment explanation
Indices: 98132084--98132140 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
98132074 ACTATTGCCC
* ** *
98132084 ATTTTAATTTATATATATGTTGTTT
1 ATTTTAAGTTATATATACATTATTT
98132109 ATTTTTAAGTTATTATATACATTATTT
1 A-TTTTAAGTTA-TATATACATTATTT
98132136 ATTTT
1 ATTTT
98132141 GGTCTTTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 13 0.50
27 12 0.46
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (25 bp):
ATTTTAAGTTATATATACATTATTT
Found at i:98132412 original size:37 final size:38
Alignment explanation
Indices: 98132365--98132443 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 38
98132355 TTACCTTAAG
*
98132365 ATTTCATATATATTACTTATATT-AAATTGTTTTACAT
1 ATTTCATATATATTACATATATTAAAATTGTTTTACAT
* *
98132402 ATTTCTTATATATTACATATTTTCAAAATTGTTTTACAT
1 ATTTCATATATATTACATATATT-AAAATTGTTTTACAT
98132441 ATT
1 ATT
98132444 ATTCATTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 20 0.54
39 17 0.46
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (38 bp):
ATTTCATATATATTACATATATTAAAATTGTTTTACAT
Found at i:98132593 original size:25 final size:26
Alignment explanation
Indices: 98132543--98132594 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
98132533 ATTTTATATG
98132543 TTATTTACTTTAAAATTTCTTATACA
1 TTATTTACTTTAAAATTTCTTATACA
* *
98132569 TTATTTA-TTTTAAATTTCTTTTACA
1 TTATTTACTTTAAAATTTCTTATACA
98132594 T
1 T
98132595 ATTATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (26 bp):
TTATTTACTTTAAAATTTCTTATACA
Found at i:98132602 original size:26 final size:27
Alignment explanation
Indices: 98132419--98132605 Score: 99
Period size: 26 Copynumber: 7.2 Consensus size: 27
98132409 ATATATTACA
* *
98132419 TATTTTCAAAATTGTTTTACATATTATT
1 TATTTT-AAATTTCTTTTACATATTATT
* *
98132447 CATTTT-AATTT-TTTT--ATATGATT
1 TATTTTAAATTTCTTTTACATATTATT
** *
98132470 TATTTTAAA--TCTTTGTGTATATTATC
1 TATTTTAAATTTCTTT-TACATATTATT
* * ** *
98132496 TATTTTAAAGTT-TTATATGTATTACT
1 TATTTTAAATTTCTTTTACATATTATT
** * * *
98132522 TGGTTTAAA-TTATTTTATATGTTATT
1 TATTTTAAATTTCTTTTACATATTATT
* *
98132548 TACTTTAAAATTTCTTATAC--ATTATT
1 TA-TTTTAAATTTCTTTTACATATTATT
98132574 TATTTTAAATTTCTTTTACATATTA-T
1 TATTTTAAATTTCTTTTACATATTATT
98132600 TATTTT
1 TATTTT
98132606 GAGCCTCTTA
Statistics
Matches: 121, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
22 1 0.01
23 15 0.12
24 3 0.02
25 21 0.17
26 58 0.48
27 11 0.09
28 12 0.10
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (27 bp):
TATTTTAAATTTCTTTTACATATTATT
Found at i:98132635 original size:21 final size:22
Alignment explanation
Indices: 98132555--98132648 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 22
98132545 ATTTACTTTA
*
98132555 AAATTTCTTATACATTATTTATTTT
1 AAATTTCTTA-ATA-TA-TTATTTT
98132580 AAATTTCTTTTACATATTATTATTTT
1 AAATTTC--TTA-ATA-TATTATTTT
* ***
98132606 GAGCCTCTTAATAT-TTATTTT
1 AAATTTCTTAATATATTATTTT
*
98132627 AAATTTCTTTATATATTATTTT
1 AAATTTCTTAATATATTATTTT
98132649 GAACTTGTCT
Statistics
Matches: 55, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
21 16 0.29
22 8 0.15
23 3 0.05
24 3 0.05
25 7 0.13
26 10 0.18
27 8 0.15
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.60
Consensus pattern (22 bp):
AAATTTCTTAATATATTATTTT
Found at i:98132661 original size:23 final size:21
Alignment explanation
Indices: 98132611--98132675 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 21
98132601 ATTTTGAGCC
98132611 TCTTA-ATATTTATTTTAAATT
1 TCTTATATA-TTATTTTAAATT
*
98132632 TCTTTATATATTATTTTGAACTT
1 TC-TTATATATTATTTT-AAATT
*
98132655 GTCTTAT-TCTTA-TTTAAATT
1 -TCTTATATATTATTTTAAATT
98132675 T
1 T
98132676 GTCTTACACA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
19 1 0.03
20 4 0.11
21 5 0.14
22 14 0.38
23 11 0.30
24 2 0.05
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (21 bp):
TCTTATATATTATTTTAAATT
Found at i:98132706 original size:20 final size:20
Alignment explanation
Indices: 98132681--98132720 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98132671 AATTTGTCTT
98132681 ACACAACTTATTTTAAACTC
1 ACACAACTTATTTTAAACTC
98132701 ACACAACTTATTTTAAACTC
1 ACACAACTTATTTTAAACTC
98132721 TCTTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (20 bp):
ACACAACTTATTTTAAACTC
Found at i:98134238 original size:57 final size:57
Alignment explanation
Indices: 98134176--98134286 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 57
98134166 CAATCACACC
* * *
98134176 TAAAAAGATTGGTGGCGACTCTCGTTTTTGTTTTTTAACATCGATTCCCGTTTTTGT
1 TAAAAAGATTGGTGGCGACTCCCGTTTTTATTTTTTAACATCGATTCCCATTTTTGT
98134233 TAAAAAGATTGGTGGCGACTCCCGTTTTTATTTTTTAACATCGATTCCCATTTT
1 TAAAAAGATTGGTGGCGACTCCCGTTTTTATTTTTTAACATCGATTCCCATTTT
98134287 CCAAAACTCG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (57 bp):
TAAAAAGATTGGTGGCGACTCCCGTTTTTATTTTTTAACATCGATTCCCATTTTTGT
Found at i:98134744 original size:17 final size:17
Alignment explanation
Indices: 98134724--98134779 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
98134714 ATAATAATAT
98134724 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
** **
98134741 ACAAAC-CTATAACAATAT
1 AC-AACTC-ATATTAATCC
98134759 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
98134776 ACAA
1 ACAA
98134780 ACCTATCACA
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (17 bp):
ACAACTCATATTAATCC
Found at i:98134752 original size:35 final size:35
Alignment explanation
Indices: 98134713--98134785 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
98134703 AACAATTGAA
*
98134713 TATAATAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
98134748 TATAACAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
98134783 TAT
1 TAT
98134786 CACATGATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (35 bp):
TATAACAATATACAACTCATATTAATCCACAAACC
Found at i:98140188 original size:18 final size:17
Alignment explanation
Indices: 98140147--98140188 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
98140137 AAAAGTTGAG
98140147 TTTT-AATAGCTAAAGA
1 TTTTAAATAGCTAAAGA
* *
98140163 TATTAAATAGCTATAGAA
1 TTTTAAATAGCTAAAG-A
98140181 TTTTAAAT
1 TTTTAAAT
98140189 TGGAGGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (17 bp):
TTTTAAATAGCTAAAGA
Found at i:98141229 original size:25 final size:25
Alignment explanation
Indices: 98141201--98141272 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
98141191 GACACACCAC
*
98141201 AGCTCGTATGAGCTTCCCGTTATAT
1 AGCTCGTATGAGCTTCCAGTTATAT
* *
98141226 AGCTC-CATGAGCTTCCAGTTATTT
1 AGCTCGTATGAGCTTCCAGTTATAT
* *
98141250 AGCACGTATGAGCTTCCTGTTAT
1 AGCTCGTATGAGCTTCCAGTTAT
98141273 TCAACTCAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 20 0.50
25 20 0.50
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCCAGTTATAT
Found at i:98144983 original size:1 final size:1
Alignment explanation
Indices: 98144977--98145004 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
98144967 ATTTAAGGCC
98144977 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
98145005 GCTTTCCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:98165671 original size:14 final size:14
Alignment explanation
Indices: 98165649--98165713 Score: 76
Period size: 14 Copynumber: 4.6 Consensus size: 14
98165639 CAACCCTCGA
* *
98165649 TCCTAAATTCTCAA
1 TCCTCAATTCTCAT
*
98165663 TCCTCAATTTTCAT
1 TCCTCAATTCTCAT
*
98165677 TCCTCAATTTTCAT
1 TCCTCAATTCTCAT
*
98165691 TCATCAATTCTCAT
1 TCCTCAATTCTCAT
*
98165705 TTCTCAATT
1 TCCTCAATT
98165714 ATTATTTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 44 1.00
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (14 bp):
TCCTCAATTCTCAT
Found at i:98168795 original size:21 final size:22
Alignment explanation
Indices: 98168739--98168801 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
98168729 ATTTGCATCG
* *
98168739 TTGAGTGGTTTATCTGCACCGT
1 TTGAGTGGTTTATCTACACCAT
***
98168761 TTGAGCAATTTATCTACACCAT
1 TTGAGTGGTTTATCTACACCAT
*
98168783 TT-AGTGGTTTATCCACACC
1 TTGAGTGGTTTATCTACACC
98168802 GTATAAGCAG
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (22 bp):
TTGAGTGGTTTATCTACACCAT
Found at i:98171931 original size:20 final size:21
Alignment explanation
Indices: 98171893--98171932 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
98171883 AAAAGAACAT
*
98171893 ATTATTATTATTAGGTTTTTA
1 ATTATTATTATTAAGTTTTTA
98171914 ATTA-TATTATTAA-TTTTTA
1 ATTATTATTATTAAGTTTTTA
98171933 TCATATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTATTATTATTAAGTTTTTA
Found at i:98171938 original size:18 final size:20
Alignment explanation
Indices: 98171898--98171938 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
98171888 AACATATTAT
* *
98171898 TATTATTAGGTTTTTAATTA
1 TATTATTAGATTTTTAATCA
98171918 TATTATTA-ATTTTT-ATCA
1 TATTATTAGATTTTTAATCA
98171936 TAT
1 TAT
98171939 AAAAACAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTATTAGATTTTTAATCA
Found at i:98172027 original size:31 final size:31
Alignment explanation
Indices: 98171985--98172053 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
98171975 ATATGATTTT
**
98171985 ATTAAA-ATTAATGGATAATTAAAAACTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
*
98172015 ATTAAATATTAATAAATAATTAAAAATTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
*
98172046 AATAAATA
1 ATTAAATA
98172054 GAAAAATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (31 bp):
ATTAAATATTAATAAATAATTAAAAACTAAA
Found at i:98172037 original size:18 final size:17
Alignment explanation
Indices: 98172014--98172050 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
98172004 TAAAAACTAA
*
98172014 AATTAAATATTAATAAAT
1 AATTAAAAATTAA-AAAT
98172032 AATTAAAAATTAAAAAT
1 AATTAAAAATTAAAAAT
98172049 AA
1 AA
98172051 ATAGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATTAAAAATTAAAAAT
Found at i:98172058 original size:18 final size:18
Alignment explanation
Indices: 98172017--98172058 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
98172007 AAACTAAAAT
* *
98172017 TAAATATTAATAAATAAT
1 TAAAAATTAATAAATAAA
98172035 TAAAAATTAA-AAATAAA
1 TAAAAATTAATAAATAAA
98172052 TAGAAAA
1 TA-AAAA
98172059 ATATGAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAAATTAATAAATAAA
Found at i:98173558 original size:41 final size:41
Alignment explanation
Indices: 98173500--98173610 Score: 125
Period size: 41 Copynumber: 2.7 Consensus size: 41
98173490 TATATATGTG
* ** *
98173500 GCACTTAGTGTGTGAGATCGA-GGTAGCTTCAGCTGTGTAAT
1 GCACTTAGTGTGCGAGAT-GATAATAGCTTCAGCTATGTAAT
* *
98173541 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATGATAATAGCTTCAGCTATGTAAT
* * *
98173582 GCACTTAGTATGCAAGATTATAATAGCTT
1 GCACTTAGTGTGCGAGATGATAATAGCTT
98173611 TGGCTATGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 1 0.02
41 60 0.98
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATGATAATAGCTTCAGCTATGTAAT
Found at i:98173641 original size:42 final size:41
Alignment explanation
Indices: 98173523--98173641 Score: 150
Period size: 41 Copynumber: 2.9 Consensus size: 41
98173513 GAGATCGAGG
* * * *
98173523 TAGCTTCAGCTGTGTAATGCACTTAGTGTGCGAGATTATAA
1 TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
98173564 TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
1 TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
* * *
98173605 TAGCTTTGGCTATGCT-TTGGCACTTAGTATGTAAGAT
1 TAGCTTCGGCTATG-TAAT-GCACTTAGTATGCAAGAT
98173642 ATCTAATAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 51 0.74
42 18 0.26
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (41 bp):
TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
Found at i:98175573 original size:21 final size:20
Alignment explanation
Indices: 98175534--98175581 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
98175524 AAGTTAAATA
98175534 AATAAATAATATTTTGGTT-
1 AATAAATAATATTTTGGTTG
98175553 AATAAA-AATAGTTATTGGGTTG
1 AATAAATAATA-TT-TT-GGTTG
98175575 AATAAAT
1 AATAAAT
98175582 TATAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 4 0.17
19 8 0.33
20 2 0.08
21 4 0.17
22 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (20 bp):
AATAAATAATATTTTGGTTG
Found at i:98180506 original size:13 final size:14
Alignment explanation
Indices: 98180488--98180516 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98180478 TAAAGACTTG
98180488 ATATG-ATTAACCA
1 ATATGAATTAACCA
98180501 ATATGAATTAACCA
1 ATATGAATTAACCA
98180515 AT
1 AT
98180517 GTCACCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
ATATGAATTAACCA
Found at i:98192072 original size:16 final size:16
Alignment explanation
Indices: 98192051--98192093 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
98192041 TGAGAAACTA
* *
98192051 TTAAAATATATATTTT
1 TTAAAAAATAAATTTT
98192067 TTAAAAAATAAATTTT
1 TTAAAAAATAAATTTT
* *
98192083 ATAATAAATAA
1 TTAAAAAATAA
98192094 TTATAGTGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAAAATAAATTTT
Found at i:98192937 original size:28 final size:28
Alignment explanation
Indices: 98192905--98192958 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
98192895 CTAAAAAATT
* *
98192905 ATTAATAATATTATTTAAATTATAATAC
1 ATTAATAATAATATTTAAACTATAATAC
*
98192933 ATTAATATTAATATTTAAACTATAAT
1 ATTAATAATAATATTTAAACTATAAT
98192959 GAATTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTAATAATAATATTTAAACTATAATAC
Found at i:98198005 original size:31 final size:31
Alignment explanation
Indices: 98197967--98198035 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
98197957 GTAATGATAC
**
98197967 ACATAAAACT-TTAATTATGGTTCAATTGTAT
1 ACATAAAA-TATTAATTATAATTCAATTGTAT
*
98197998 ACATAAAATATTAATTTTAATTCAATTGTAT
1 ACATAAAATATTAATTATAATTCAATTGTAT
*
98198029 ATATAAA
1 ACATAAA
98198036 TAAATACATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (31 bp):
ACATAAAATATTAATTATAATTCAATTGTAT
Found at i:98203233 original size:32 final size:31
Alignment explanation
Indices: 98203186--98203247 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
98203176 GAAATTTTAG
* *
98203186 TTTGTTGGATTTTGAAATTATCATGTCTTAAA
1 TTTGTTAGATATTGAAATTATCATGT-TTAAA
* *
98203218 TTTGTTAGATATTGAATTTATTATGTTTAA
1 TTTGTTAGATATTGAAATTATCATGTTTAA
98203248 CCTCATTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53
Consensus pattern (31 bp):
TTTGTTAGATATTGAAATTATCATGTTTAAA
Found at i:98204302 original size:25 final size:25
Alignment explanation
Indices: 98204225--98204303 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
98204215 TGTGGTGTAA
* *
98204225 TATTAGTTATGCACTTGGATAATAT
1 TATTAATTATGCATTTGGATAATAT
* * * *
98204250 TGTT-ATTAT-CATGTGG-T-GTAC
1 TATTAATTATGCATTTGGATAATAT
*
98204271 TACTAATTATGCATTTGGATAATAT
1 TATTAATTATGCATTTGGATAATAT
98204296 TATTAATT
1 TATTAATT
98204304 TCTAATATTA
Statistics
Matches: 38, Mismatches: 12, Indels: 8
0.66 0.21 0.14
Matches are distributed among these distances:
21 4 0.11
22 6 0.16
23 11 0.29
24 5 0.13
25 12 0.32
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (25 bp):
TATTAATTATGCATTTGGATAATAT
Found at i:98204605 original size:19 final size:20
Alignment explanation
Indices: 98204581--98204626 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
98204571 CATCCTAACA
98204581 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
98204600 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
98204620 CCAGAAA
1 CCAGAAA
98204627 TCATTTTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:98205219 original size:153 final size:153
Alignment explanation
Indices: 98204936--98205243 Score: 571
Period size: 153 Copynumber: 2.0 Consensus size: 153
98204926 TTTAAGAATG
*
98204936 TGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTACTCTATGG
1 TGCCTTTTCGAAATAATTAGAAATATTATTGTCTCATCGTTTTTTCACTTTCTTCTACTCTATGG
* *
98205001 TTTCTCCATAGTATTTTGACCAATAAAATGTGCTTGTTCCTTAATTCTTTTACTTCTTGAGCTAA
66 TTTCTCCATAGTATTTTGACCAATAAAATGTGCTTGCTCCTTAATTCTTTTACTTCTTGAACTAA
98205066 TATTACCATTGACTTTTTTTATA
131 TATTACCATTGACTTTTTTTATA
*
98205089 TGCCTTTTCGAAATAATTAGAAATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTATGG
1 TGCCTTTTCGAAATAATTAGAAATATTATTGTCTCATCGTTTTTTCACTTTCTTCTACTCTATGG
*
98205154 TTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGCTCCTTAATTCTTTTACTTCTTGAACTAA
66 TTTCTCCATAGTATTTTGACCAATAAAATGTGCTTGCTCCTTAATTCTTTTACTTCTTGAACTAA
98205219 TATTACCATTGACTTTTTTTATA
131 TATTACCATTGACTTTTTTTATA
98205242 TG
1 TG
98205244 TCAAATCTAG
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 150 1.00
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (153 bp):
TGCCTTTTCGAAATAATTAGAAATATTATTGTCTCATCGTTTTTTCACTTTCTTCTACTCTATGG
TTTCTCCATAGTATTTTGACCAATAAAATGTGCTTGCTCCTTAATTCTTTTACTTCTTGAACTAA
TATTACCATTGACTTTTTTTATA
Found at i:98216973 original size:14 final size:13
Alignment explanation
Indices: 98216941--98216983 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
98216931 TTAAGAAATG
*
98216941 TTTTTAAAAAGTA
1 TTTTAAAAAAGTA
*
98216954 TATTAAAAAAGTGA
1 TTTTAAAAAAGT-A
98216968 TTTTAAAAAA-TA
1 TTTTAAAAAAGTA
98216980 TTTT
1 TTTT
98216984 TGAAAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 5 0.19
13 11 0.42
14 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAAGTA
Found at i:98217969 original size:20 final size:20
Alignment explanation
Indices: 98217924--98217970 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
98217914 GAGAATTATT
98217924 TTAAAAAATATTAAGAATTA
1 TTAAAAAATATTAAGAATTA
** *
98217944 CAAAAAAAGTTTTAA-AATTA
1 TTAAAAAA-TATTAAGAATTA
98217964 TTAAAAA
1 TTAAAAA
98217971 TTGTGAAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (20 bp):
TTAAAAAATATTAAGAATTA
Found at i:98220760 original size:37 final size:37
Alignment explanation
Indices: 98220652--98220761 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
98220642 TTTAGCTCGA
* * *
98220652 ATAATCCCCACACGTAGTTATCGGGTCTTACCCGAAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
98220689 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
98220726 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
98220762 ATATATTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:98220959 original size:48 final size:48
Alignment explanation
Indices: 98220901--98221190 Score: 472
Period size: 48 Copynumber: 6.0 Consensus size: 48
98220891 ATATACACAC
* *
98220901 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
98220949 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
98220997 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98221045 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
98221093 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
98221141 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
98221189 AT
1 AT
98221191 ATTTATCTTG
Statistics
Matches: 224, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 224 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:98224661 original size:12 final size:12
Alignment explanation
Indices: 98224644--98224669 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98224634 CTATTCTGCT
98224644 GTATCAAGGTAA
1 GTATCAAGGTAA
98224656 GTATCAAGGTAA
1 GTATCAAGGTAA
98224668 GT
1 GT
98224670 TCGTGTAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (12 bp):
GTATCAAGGTAA
Found at i:98234156 original size:24 final size:23
Alignment explanation
Indices: 98234129--98234177 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
98234119 ATCGGCTAGT
*
98234129 TCACAAAGAACCATATCGGGAAGC
1 TCACAAAGAACC-TATCAGGAAGC
* *
98234153 TCACGAAGAGCCTATCAGGAAGC
1 TCACAAAGAACCTATCAGGAAGC
98234176 TC
1 TC
98234178 CGGATAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (23 bp):
TCACAAAGAACCTATCAGGAAGC
Found at i:98234173 original size:23 final size:23
Alignment explanation
Indices: 98234142--98234258 Score: 94
Period size: 23 Copynumber: 5.0 Consensus size: 23
98234132 CAAAGAACCA
98234142 TATCGGGAAGCTCACGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * *
98234165 TATCAGGAAGCTC-CGGATAGCC
1 TATCGGGAAGCTCACGAAGAGCC
* * * *
98234187 ATATATCAGGAAGTTCAAG-CGAGCAC
1 ---TATCGGGAAGCTCACGAAGAGC-C
* *
98234213 TACCGGGAAGCTCACAAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
*
98234236 TATCGGGAAGCTCATGAAGAGCC
1 TATCGGGAAGCTCACGAAGAGCC
98234259 ATATATCGGG
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
22 7 0.10
23 44 0.61
24 4 0.06
25 15 0.21
26 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.15
Consensus pattern (23 bp):
TATCGGGAAGCTCACGAAGAGCC
Found at i:98236475 original size:18 final size:18
Alignment explanation
Indices: 98236431--98236471 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
98236421 ATAATAAAAT
* *
98236431 AATAAAATATCTCATTAA
1 AATAATATATCTAATTAA
98236449 AATAATATATCTAATT-A
1 AATAATATATCTAATTAA
98236466 AATAAT
1 AATAAT
98236472 TATAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAATATATCTAATTAA
Found at i:98239672 original size:14 final size:14
Alignment explanation
Indices: 98239634--98239676 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
98239624 TTGCCTTGCA
98239634 AATTTTAAAACATT-
1 AATTTTAAAA-ATTC
*
98239648 ATTTTTCAAAAATTC
1 AATTTT-AAAAATTC
98239663 AATTTTAAAAATTC
1 AATTTTAAAAATTC
98239677 GCAGCGGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTTTAAAAATTC
Found at i:98241184 original size:20 final size:21
Alignment explanation
Indices: 98241141--98241185 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
98241131 TATTTAGATC
* * *
98241141 AAAAAAAGAGAAGAAATGAGA
1 AAAAAAAAAGAAGAAAAGACA
98241162 AAAAAAAAAG-AGAAAAGACA
1 AAAAAAAAAGAAGAAAAGACA
98241182 AAAA
1 AAAA
98241186 GATTATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAGAAAAGACA
Found at i:98243624 original size:48 final size:49
Alignment explanation
Indices: 98243569--98243701 Score: 157
Period size: 48 Copynumber: 2.7 Consensus size: 49
98243559 ACACAAATAA
*
98243569 AATATATTACCATCAT-GGATGACAT-GACAATGATGGTTCATTCTA-TTC
1 AATATATTACCATC-TCGAATGAC-TCGACAATGATGGTTCATTCTATTTC
*
98243617 AATATATTACCATCTCGAATGGCTCGACAATGATGGTTCATTCTATTTC
1 AATATATTACCATCTCGAATGACTCGACAATGATGGTTCATTCTATTTC
* * * *
98243666 AATAT-TCTACCATCCCGAATGGCCCGACAACGATGG
1 AATATAT-TACCATCTCGAATGACTCGACAATGATGG
98243702 CTGTCATTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 2 0.03
48 40 0.53
49 34 0.45
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (49 bp):
AATATATTACCATCTCGAATGACTCGACAATGATGGTTCATTCTATTTC
Found at i:98243686 original size:49 final size:48
Alignment explanation
Indices: 98243594--98243701 Score: 164
Period size: 49 Copynumber: 2.2 Consensus size: 48
98243584 TGGATGACAT
* *
98243594 GACAATGATGGTTCATTCTATTCAATATATTACCATCTCGAATGGCTC
1 GACAATGATGGTTCATTCTATTCAATATATTACCATCCCGAATGGCCC
98243642 GACAATGATGGTTCATTCTATTTCAATAT-TCTACCATCCCGAATGGCCC
1 GACAATGATGGTTCATTCTA-TTCAATATAT-TACCATCCCGAATGGCCC
*
98243691 GACAACGATGG
1 GACAATGATGG
98243702 CTGTCATTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
48 21 0.38
49 34 0.62
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (48 bp):
GACAATGATGGTTCATTCTATTCAATATATTACCATCCCGAATGGCCC
Found at i:98261694 original size:12 final size:12
Alignment explanation
Indices: 98261673--98261702 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98261663 AGAATGAAGC
98261673 AAGG-AAGGAAA
1 AAGGAAAGGAAA
98261684 AAGGAAAGGAAA
1 AAGGAAAGGAAA
98261696 AAGGAAA
1 AAGGAAA
98261703 AGATCAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
AAGGAAAGGAAA
Found at i:98262136 original size:19 final size:19
Alignment explanation
Indices: 98262095--98262137 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
98262085 CAAGCCAAAT
* ** *
98262095 TATTTTATAAAATTATTAT
1 TATTTTAAAAAATTAAAAA
98262114 TATTTTAAAAAATTAAAAA
1 TATTTTAAAAAATTAAAAA
98262133 TATTT
1 TATTT
98262138 AATAGTCATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTTAAAAAATTAAAAA
Found at i:98263998 original size:30 final size:30
Alignment explanation
Indices: 98263963--98264021 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
98263953 AGCAAAAAAC
98263963 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
1 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
* *
98263993 TCTCAAATTTCTCCTTAAATTTCTCAAAG
1 TCTCAAATTGCTCCCTAAATTTCTCAAAG
98264022 CTCTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
TCTCAAATTGCTCCCTAAATTTCTCAAAGT
Found at i:98266141 original size:29 final size:29
Alignment explanation
Indices: 98266109--98266190 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
98266099 TTTTAGGTCA
*
98266109 TTTAATAAAATAAAAGTTGTTTTTAATAT
1 TTTAATAAAATAAAAGTTATTTTTAATAT
*
98266138 TTTAAT--AGT-AAA-TTATTTTT-ATAT
1 TTTAATAAAATAAAAGTTATTTTTAATAT
* *
98266162 TTCTAATAAAATAGAAGTTATTTTGAATA
1 TT-TAATAAAATAAAAGTTATTTTTAATA
98266191 AGGCGTAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
24 6 0.14
25 11 0.26
26 3 0.07
27 4 0.10
28 2 0.05
29 13 0.31
30 3 0.07
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (29 bp):
TTTAATAAAATAAAAGTTATTTTTAATAT
Found at i:98269752 original size:251 final size:252
Alignment explanation
Indices: 98269244--98269763 Score: 741
Period size: 251 Copynumber: 2.1 Consensus size: 252
98269234 AGCCAAACAT
* *
98269244 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGTAATTTTGCTGACAGTGCAT
* * * *
98269309 CCTGCTTAAAGCATTATGGAGACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTTAGGAA
66 CCTGCTTAAAGCATTATGGACACTATCTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAA
*
98269374 CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTA
131 CTACTATAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTA
98269439 CTTAAAGCGTTTTTACACTATTTTTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
196 CTTAAAGCGTTTTTACACTATTTTTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
* * * *
98269496 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTC-TTCAATTTTGTTGACAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGT-AATTTTGCTGACAGTGCA
* * * * *
98269559 T-CTCGCTTGAAGCATTTTTGACACTATCTGTTCAG-AACTGTTTTTTCAAAATTA-TTTTTCAG
65 TCCT-GCTTAAAGCATTATGGACACTATCTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
*
98269621 GAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAAT-AATTTTGCTGACAGTGCAT
128 GAACTACTATAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTC-ATCAATTTTGCTGACAGTGCAT
* * *
98269685 CCTGCTTGAAGCGTTTTTAACACTATTTGTTT-AG-AACTGTCTTTTCAAAATTATTTTTTCAG
192 CCTACTTAAAGCGTTTTT-ACACTATTT-TTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
98269747 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
98269764 AACCAAGATC
Statistics
Matches: 241, Mismatches: 20, Indels: 15
0.87 0.07 0.05
Matches are distributed among these distances:
250 91 0.38
251 115 0.48
252 35 0.15
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (252 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGTAATTTTGCTGACAGTGCAT
CCTGCTTAAAGCATTATGGACACTATCTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAA
CTACTATAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTA
CTTAAAGCGTTTTTACACTATTTTTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
Done.