Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 328 of 345
Found at i:98269764 original size:125 final size:126
Alignment explanation
Indices: 98269244--98269763 Score: 696
Period size: 125 Copynumber: 4.1 Consensus size: 126
98269234 AGCCAAACAT
* * * *
98269244 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGT-AATTTTGCTGATAGTGCA
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTCA-TCAATTTTGCTGACAGTGCA
* * * *
98269308 TCCTGCTTAAAGCATTATGGAGACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTTAG
64 TCCTGCTTAAAGCATTTTTGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAG
* *
98269371 GAACTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
* *
98269436 CTACTTAAAGCGTTTTT-ACACTATTT-TTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTAAAGCATTTTTGACACTATTTGTTT-AGAAACGTCTTCTCAAAATTATTTTTTCAG
* *
98269496 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTTCAATTTTGTTGACAGTGCAT-
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
* * * * *
98269560 CTCGCTTGAAGCATTTTTGACACTATCTGTTCAG-AACTGTTTTTTCAAAATTA-TTTTTCAG
66 CT-GCTTAAAGCATTTTTGACACTATTTGTTTAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
* *
98269621 GAACTACTGTAGAAAAAAAGCGTCCATGTGGGAGCTTTTTTCAAT-AATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTC-ATCAATTTTGCTGACAGTGCAT
* * * *
98269685 CCTGCTTGAAGCGTTTTTAACACTATTTGTTTAG-AACTGTCTTTTCAAAATTATTTTTTCAG
65 CCTGCTTAAAGCATTTTTGACACTATTTGTTTAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
98269747 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
98269764 AACCAAGATC
Statistics
Matches: 352, Mismatches: 32, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
124 5 0.01
125 224 0.64
126 91 0.26
127 32 0.09
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
CTGCTTAAAGCATTTTTGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAG
Found at i:98269881 original size:34 final size:34
Alignment explanation
Indices: 98269825--98269987 Score: 152
Period size: 34 Copynumber: 4.7 Consensus size: 34
98269815 CCAATATTAT
* * **
98269825 TTTAAAAAAATTAAACCAAAATTTAATTAATTT-
1 TTTAAAAACACTAAACCCTAATTTAATTAATTTA
* *
98269858 TCTTAAAAACACTAAATCCAAATTTAATTAATTTA
1 T-TTAAAAACACTAAACCCTAATTTAATTAATTTA
*
98269893 TTT-AAAACCCTTAAACCCTAATTTAATTAATTTA
1 TTTAAAAACAC-TAAACCCTAATTTAATTAATTTA
* * *
98269927 TTTAAAACCCCCAAACCCTAATTTAATTAATTT-
1 TTTAAAAACACTAAACCCTAATTTAATTAATTTA
* *
98269960 TTAAAAAAGAACACTAAATCCTAATTTA
1 TT--TAAA-AACACTAAACCCTAATTTA
98269988 TTTTTAAAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
33 9 0.08
34 75 0.69
35 10 0.09
36 15 0.14
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.37
Consensus pattern (34 bp):
TTTAAAAACACTAAACCCTAATTTAATTAATTTA
Found at i:98270515 original size:50 final size:50
Alignment explanation
Indices: 98270415--98270507 Score: 127
Period size: 50 Copynumber: 1.9 Consensus size: 50
98270405 AATTTATATT
* * **
98270415 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATCTAATGATTTTTA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
*
98270465 TCTAGTGATTTTAATTGTTATTTATAAATTTAT-TA-ATAATAAA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAA
98270508 CAATTTATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 5 0.13
49 2 0.05
50 32 0.82
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.53
Consensus pattern (50 bp):
TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
Found at i:98295837 original size:31 final size:31
Alignment explanation
Indices: 98295797--98295861 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
98295787 ATTAGATTAG
* *
98295797 ATATCAAATT-AAGAAAAAATGTTAAGTTTAA
1 ATATCAAATTAAAGAAAAAAT-TCAAGTTGAA
* *
98295828 ATATTAAATTAAATAAAAAATTCAAGTTGAA
1 ATATCAAATTAAAGAAAAAATTCAAGTTGAA
98295859 ATA
1 ATA
98295862 GTAGCCAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 20 0.69
32 9 0.31
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (31 bp):
ATATCAAATTAAAGAAAAAATTCAAGTTGAA
Found at i:98298469 original size:16 final size:16
Alignment explanation
Indices: 98298450--98298497 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
98298440 TTAAATATAT
98298450 AAAAAAATAAAAATAA
1 AAAAAAATAAAAATAA
98298466 AAAAAAATAAAAACTAA
1 AAAAAAATAAAAA-TAA
** *
98298483 ACTAAATTAAAAATA
1 AAAAAAATAAAAATA
98298498 TAATCTCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAAAATAAAAATAA
Found at i:98298923 original size:21 final size:18
Alignment explanation
Indices: 98298886--98298924 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
98298876 TAAAAAAATC
98298886 AATTTAATCGTTTCAATT
1 AATTTAATCGTTTCAATT
98298904 AATTTGAATCAGTTCTCAATT
1 AATTT-AATC-GTT-TCAATT
98298925 TAATGGATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 3 0.17
21 6 0.33
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (18 bp):
AATTTAATCGTTTCAATT
Found at i:98299318 original size:26 final size:25
Alignment explanation
Indices: 98299289--98299337 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
98299279 CTTACATTGA
98299289 TAAAAAAAAAAAAAACTTTAAGTATC
1 TAAAAAAAAAAAAAA-TTTAAGTATC
**
98299315 TAAATGAAAAAAAAATTTAAGTA
1 TAAAAAAAAAAAAAATTTAAGTA
98299338 CCTATTTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.24
Consensus pattern (25 bp):
TAAAAAAAAAAAAAATTTAAGTATC
Found at i:98299641 original size:27 final size:27
Alignment explanation
Indices: 98299603--98299683 Score: 144
Period size: 27 Copynumber: 3.0 Consensus size: 27
98299593 AATATAGGTT
98299603 GAGGGTACCCCATAGGCGGCACCGGTG
1 GAGGGTACCCCATAGGCGGCACCGGTG
* *
98299630 GAGGGTACCCCATAGGCGGCATCGGTT
1 GAGGGTACCCCATAGGCGGCACCGGTG
98299657 GAGGGTACCCCATAGGCGGCACCGGTG
1 GAGGGTACCCCATAGGCGGCACCGGTG
98299684 CTGCTGTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.19, C:0.28, G:0.40, T:0.14
Consensus pattern (27 bp):
GAGGGTACCCCATAGGCGGCACCGGTG
Found at i:98299707 original size:3 final size:3
Alignment explanation
Indices: 98299695--98299728 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
98299685 TGCTGTCATG
*
98299695 GAA GAG GAA GAA GAA GAA G-A GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
98299729 GGGCAGCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:98299720 original size:14 final size:14
Alignment explanation
Indices: 98299695--98299729 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
98299685 TGCTGTCATG
98299695 GAAGAGGAAGAAGAA
1 GAAGA-GAAGAAGAA
98299710 GAAGAGAAGAAGAA
1 GAAGAGAAGAAGAA
98299724 GAAGAG
1 GAAGAG
98299730 GGCAGCAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (14 bp):
GAAGAGAAGAAGAA
Found at i:98300197 original size:11 final size:11
Alignment explanation
Indices: 98300181--98300210 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
98300171 TAAATTTAAG
*
98300181 AATTAAATTTC
1 AATTAAATTCC
98300192 AATTAAATTCC
1 AATTAAATTCC
98300203 AATTAAAT
1 AATTAAAT
98300211 CAACAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (11 bp):
AATTAAATTCC
Found at i:98300519 original size:27 final size:27
Alignment explanation
Indices: 98300489--98300542 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
98300479 CAGCAGCACT
98300489 GGTGCCGCCTATGGGGTACCCTCAACC
1 GGTGCCGCCTATGGGGTACCCTCAACC
98300516 GGTGCCGCCTATGGGGTACCCTCAACC
1 GGTGCCGCCTATGGGGTACCCTCAACC
98300543 TATATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.37, G:0.30, T:0.19
Consensus pattern (27 bp):
GGTGCCGCCTATGGGGTACCCTCAACC
Found at i:98301157 original size:19 final size:19
Alignment explanation
Indices: 98301128--98301164 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
98301118 TTTCTTGGTT
98301128 TGCATTTTTAGT-TTTTTA
1 TGCATTTTTAGTATTTTTA
98301146 TGCATATTTTAGTATTTTT
1 TGCAT-TTTTAGTATTTTT
98301165 TATTTGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.19, C:0.05, G:0.11, T:0.65
Consensus pattern (19 bp):
TGCATTTTTAGTATTTTTA
Found at i:98302788 original size:11 final size:11
Alignment explanation
Indices: 98302772--98302817 Score: 60
Period size: 10 Copynumber: 4.4 Consensus size: 11
98302762 ATATTTAACT
98302772 AAAATAAAAGA
1 AAAATAAAAGA
98302783 AAAATAAAAG-
1 AAAATAAAAGA
*
98302793 AAAATAATA-A
1 AAAATAAAAGA
*
98302803 ATAATAAAAGA
1 AAAATAAAAGA
98302814 AAAA
1 AAAA
98302818 AATAAAAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 15 0.52
11 14 0.48
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (11 bp):
AAAATAAAAGA
Found at i:98302810 original size:20 final size:20
Alignment explanation
Indices: 98302785--98302823 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
98302775 ATAAAAGAAA
*
98302785 AATAAAAGAAAATAATAAAT
1 AATAAAAGAAAAAAATAAAT
98302805 AATAAAAGAAAAAAATAAA
1 AATAAAAGAAAAAAATAAA
98302824 AAGAAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (20 bp):
AATAAAAGAAAAAAATAAAT
Found at i:98305129 original size:121 final size:121
Alignment explanation
Indices: 98304915--98305274 Score: 711
Period size: 121 Copynumber: 3.0 Consensus size: 121
98304905 TAATCACTAG
98304915 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
1 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
*
98304980 TACCCAAAACAAAACGTCTAGTTTTACCGAGTTATTTCTTTGATAGTGTGATCGGC
66 TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATCGGC
98305036 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
1 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
98305101 TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATCGGC
66 TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATCGGC
98305157 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
1 CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
98305222 TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATC
66 TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATC
98305275 AGCCTCCGAC
Statistics
Matches: 238, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 238 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (121 bp):
CAAGTATTTACACATCATTCATTGTTCATATTATACCAAAAGTAGCTAAGTTTCTATACATGCCA
TACCCAAAACAAAACGTCTAGTTATACCGAGTTATTTCTTTGATAGTGTGATCGGC
Found at i:98305697 original size:44 final size:45
Alignment explanation
Indices: 98305644--98305746 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
98305634 TGTCTTTGAC
* * *
98305644 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
98305688 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
*
98305734 ATCGACTTACATG
1 ATGGACTTACATG
98305747 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 33 0.66
46 17 0.34
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:98305749 original size:46 final size:44
Alignment explanation
Indices: 98305663--98305751 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
98305653 CATGAATTAT
* *
98305663 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATCGACTTACATGGCTCAA
*
98305707 TCCTGTCTCCAAAGCCATATTTCTAATATCGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATCGACTTACATGGCTCA
98305752 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATCGACTTACATGGCTCAA
Found at i:98313058 original size:43 final size:45
Alignment explanation
Indices: 98313006--98313106 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
98312996 TGTCTTTGAC
* * *
98313006 ATGGACTTACAT-AATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
98313049 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
98313095 AT-GACTTACATG
1 ATGGACTTACATG
98313107 GTCATTTCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
43 12 0.24
44 20 0.41
45 10 0.20
46 7 0.14
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:98329528 original size:21 final size:21
Alignment explanation
Indices: 98329504--98329543 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98329494 AACCAAATTT
98329504 TATATAAAATATAAAAAATCA
1 TATATAAAATATAAAAAATCA
* *
98329525 TATATAATATATAATAAAT
1 TATATAAAATATAAAAAAT
98329544 TTTAAACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TATATAAAATATAAAAAATCA
Found at i:98329534 original size:26 final size:25
Alignment explanation
Indices: 98329479--98329542 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
98329469 ATTTAAAAAA
* *
98329479 AATATAAATTAAAAAAACCAAATTT
1 AATATAAAATAAAAAAACCAAATAT
* * *
98329504 TATATAAAATATAAAAAATCATATAT
1 AATATAAAATA-AAAAAACCAAATAT
*
98329530 AATATATAATAAA
1 AATATAAAATAAA
98329543 TTTTAAACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AATATAAAATAAAAAAACCAAATAT
Found at i:98329632 original size:46 final size:45
Alignment explanation
Indices: 98329579--98329667 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 45
98329569 AATATATAAA
*
98329579 TATATAAAAAT-CAAATATTATATAAATATTGAAATTTAAAAAAAAT
1 TATATAAAAATAAAAATATTATATAAA-ATTGAAA-TTAAAAAAAAT
* *
98329625 TATATAAAATTAAAAATATTATATAAAATTTAAATTAAAAAAA
1 TATATAAAAATAAAAATATTATATAAAATTGAAATTAAAAAAA
98329668 TCTAAAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
45 9 0.23
46 16 0.41
47 14 0.36
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (45 bp):
TATATAAAAATAAAAATATTATATAAAATTGAAATTAAAAAAAAT
Found at i:98329657 original size:20 final size:20
Alignment explanation
Indices: 98329610--98329658 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
98329600 ATAAATATTG
98329610 AAATTTAAAAAAAATTATATA
1 AAATTT-AAAAAAATTATATA
*
98329631 AAA-TTAAAAATATTATATA
1 AAATTTAAAAAAATTATATA
98329650 AAATTTAAA
1 AAATTTAAA
98329659 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 16 0.62
20 7 0.27
21 3 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATTTAAAAAAATTATATA
Found at i:98329691 original size:16 final size:15
Alignment explanation
Indices: 98329572--98329692 Score: 54
Period size: 16 Copynumber: 7.6 Consensus size: 15
98329562 ATTCTACAAT
98329572 ATATAAATATATAAAA
1 ATATAAAT-TATAAAA
*
98329588 ATCA-AATATTATATAA
1 AT-ATAA-ATTATAAAA
98329604 ATATTGAAATT-T-AAA
1 ATA-T-AAATTATAAAA
98329619 A-A-AAATTATATAAA
1 ATATAAATTATA-AAA
*
98329633 ATTAAAAATATTATATAAA
1 A-T-ATAA-ATTATA-AAA
* *
98329652 ATTTAAATTAAAAAA
1 ATATAAATTATAAAA
*
98329667 ATCTAAAATTATAAAA
1 ATAT-AAATTATAAAA
98329683 CATATAAATT
1 -ATATAAATT
98329693 GAAAATTTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 30
0.68 0.07 0.25
Matches are distributed among these distances:
11 5 0.06
12 1 0.01
14 5 0.06
15 10 0.12
16 33 0.40
17 12 0.15
18 5 0.06
19 11 0.13
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (15 bp):
ATATAAATTATAAAA
Found at i:98329691 original size:23 final size:21
Alignment explanation
Indices: 98329671--98329712 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
98329661 AAAAAAATCT
98329671 AAAATTATAAAACATATAAATTG
1 AAAATTATAAAA-ATA-AAATTG
*
98329694 AAAATTTTAAAAATAAAAT
1 AAAATTATAAAAATAAAAT
98329713 ATTATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATTATAAAAATAAAATTG
Found at i:98329784 original size:2 final size:2
Alignment explanation
Indices: 98329777--98329808 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
98329767 AAAAATTCTA
98329777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98329809 CTAAATTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98329871 original size:20 final size:20
Alignment explanation
Indices: 98329839--98329888 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
98329829 AATTTATATA
98329839 TGTTTTGGGATGAACTTTGTC
1 TGTTTT-GGATGAACTTTGTC
*
98329860 TGTTTTGGATGAAGTTTGTC
1 TGTTTTGGATGAACTTTGTC
*
98329880 TATTTTGGA
1 TGTTTTGGA
98329889 AATTTAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (20 bp):
TGTTTTGGATGAACTTTGTC
Found at i:98339931 original size:25 final size:25
Alignment explanation
Indices: 98339903--98339984 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
98339893 GGAAAGCTTG
*
98339903 TGAGAGCCATATAATGGGATGCTCA
1 TGAGAGCCATATAATGGGAAGCTCA
* * * * *
98339928 TGAGAGCTAAATAAAGGAAAGCTCG
1 TGAGAGCCATATAATGGGAAGCTCA
* * *
98339953 TGAGAGAC-TATTATCGGGACGCTCA
1 TGAGAGCCATATAAT-GGGAAGCTCA
98339978 TGAGAGC
1 TGAGAGC
98339985 TATGGTGTTT
Statistics
Matches: 41, Mismatches: 15, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
24 3 0.07
25 38 0.93
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (25 bp):
TGAGAGCCATATAATGGGAAGCTCA
Found at i:98339933 original size:50 final size:49
Alignment explanation
Indices: 98339879--98339987 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 49
98339869 GGTAGCTCTA
* * * *
98339879 GAGAGCTATTAATTGGAAAGCTTGTGAGAGCCATATAAT-GGGATGCTCAT
1 GAGAGCTATTAA-AGGAAAGCTCGTGAGAGAC-TATAATCGGGACGCTCAT
* *
98339929 GAGAGCTAAATAAAGGAAAGCTCGTGAGAGACTATTATCGGGACGCTCAT
1 GAGAGCT-ATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCAT
98339979 GAGAGCTAT
1 GAGAGCTAT
98339988 GGTGTTTCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
49 6 0.12
50 40 0.80
51 4 0.08
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (49 bp):
GAGAGCTATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCAT
Found at i:98345239 original size:13 final size:13
Alignment explanation
Indices: 98345221--98345245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98345211 GAGAATTTAC
98345221 TAAATAAGAATAT
1 TAAATAAGAATAT
98345234 TAAATAAGAATA
1 TAAATAAGAATA
98345246 AATTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
TAAATAAGAATAT
Found at i:98353904 original size:33 final size:34
Alignment explanation
Indices: 98353844--98353915 Score: 103
Period size: 33 Copynumber: 2.1 Consensus size: 34
98353834 ATGTTATCTA
98353844 GTGTGTTGGCTGGTTTGGCTCACACGAGCATT-TG
1 GTGTGTTGGCTGGTTTGGCTCACACGAGC-TTCTG
* *
98353878 GTGTGTTGGTTGG-TTGGCTCATACGAGCTTCTG
1 GTGTGTTGGCTGGTTTGGCTCACACGAGCTTCTG
98353911 GTGTG
1 GTGTG
98353916 CTGAATGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 2 0.06
33 21 0.60
34 12 0.34
ACGTcount: A:0.10, C:0.15, G:0.38, T:0.38
Consensus pattern (34 bp):
GTGTGTTGGCTGGTTTGGCTCACACGAGCTTCTG
Found at i:98353925 original size:33 final size:33
Alignment explanation
Indices: 98353858--98353925 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
98353848 GTTGGCTGGT
* **
98353858 TTGGCTCACACGAGCATTTGGTGTGTTGGTTGG
1 TTGGCTCACACGAGCATTTGGTGTGCTGAATGG
*
98353891 TTGGCTCATACGAGC-TTCTGGTGTGCTGAATGG
1 TTGGCTCACACGAGCATT-TGGTGTGCTGAATGG
98353924 TT
1 TT
98353926 AACCCTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 2 0.07
33 28 0.93
ACGTcount: A:0.13, C:0.16, G:0.34, T:0.37
Consensus pattern (33 bp):
TTGGCTCACACGAGCATTTGGTGTGCTGAATGG
Found at i:98355503 original size:55 final size:55
Alignment explanation
Indices: 98355419--98355537 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 55
98355409 CAATAGGTCT
* * *
98355419 TCATATAGGGTTCAGGTATGGTTTAAGTTGGAAATGGTGTTTATATTCCTATGAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
* *
98355474 TCATATAGGGTACATGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATTAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
98355529 TCATATAGG
1 TCATATAGG
98355538 CCAATTAGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.39
Consensus pattern (55 bp):
TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
Found at i:98361115 original size:24 final size:24
Alignment explanation
Indices: 98361077--98361125 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
98361067 CCAAACTATG
*
98361077 ACTTTTATTTACAATTATATTGTA
1 ACTTTTATATACAATTATATTGTA
*
98361101 ACTTTTATATGCAATTATATTGTA
1 ACTTTTATATACAATTATATTGTA
98361125 A
1 A
98361126 TTATGGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (24 bp):
ACTTTTATATACAATTATATTGTA
Found at i:98363715 original size:43 final size:43
Alignment explanation
Indices: 98363642--98363838 Score: 191
Period size: 43 Copynumber: 4.6 Consensus size: 43
98363632 CATAGGATTC
* * * * *
98363642 CGATATATGATTTCGTGTAAAACCAAGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * * *
98363685 CGATATGTGATTTCATATAAGACCATGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* **
98363728 CGATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGTGT
1 CGATATGTGATTT-CGTGTAAGACCATGTCTGGGACATTGGCAT
* * * *
98363772 TGTATATG-G-TTTCGTGTAAGACCCTGTCTGGGACAATGGCTT
1 CG-ATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
98363814 CGATATTTGATTACATGTAAGACCA
1 CGATATGTGATTTCGTGTAAGACCA
98363839 CATCCGGGAC
Statistics
Matches: 127, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
41 4 0.03
42 28 0.22
43 65 0.51
44 26 0.20
45 4 0.03
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
CGATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:98363857 original size:85 final size:86
Alignment explanation
Indices: 98363702--98363860 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 86
98363692 TGATTTCATA
* ** * ** *
98363702 TAAGACCATGTTTGGGACGTTGGCATCGATTTGTGATTTACGTGTAAGACCATGTCTGGGACATT
1 TAAGACCATGTCTGGGACAATGGCATCGATTTGTGATTTACATGTAAGACCACATCCGGGACATT
98363767 GGTGTTGTATATGGTTTCGTG
66 GGTGTTGTATATGGTTTCGTG
* * *
98363788 TAAGACCCTGTCTGGGACAATGGCTTCGATATT-TGA-TTACATGTAAGACCACATCCGGGACGT
1 TAAGACCATGTCTGGGACAATGGCATCGAT-TTGTGATTTACATGTAAGACCACATCCGGGACAT
98363851 TGGTGTTGTA
65 TGGTGTTGTA
98363861 CGAGTTTATG
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 32 0.52
86 28 0.45
87 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (86 bp):
TAAGACCATGTCTGGGACAATGGCATCGATTTGTGATTTACATGTAAGACCACATCCGGGACATT
GGTGTTGTATATGGTTTCGTG
Found at i:98367374 original size:2 final size:2
Alignment explanation
Indices: 98367358--98367396 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
98367348 CTGAGCTGAG
* *
98367358 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98367397 CAAGTTATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:98378199 original size:18 final size:18
Alignment explanation
Indices: 98378173--98378207 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98378163 TAGTTAAACG
*
98378173 AATCGAATTATTCGAATT
1 AATCAAATTATTCGAATT
*
98378191 AATCAAATTATTTGAAT
1 AATCAAATTATTCGAAT
98378208 CAATTCGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (18 bp):
AATCAAATTATTCGAATT
Found at i:98378434 original size:23 final size:21
Alignment explanation
Indices: 98378401--98378451 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
98378391 ATATCCCCCC
* *
98378401 CCCCCAATTTTACTATCTCCA
1 CCCCCAATTTTACTACCTCAA
*
98378422 CCCCCAATGTTTTACTCCCTCAA
1 CCCCCAA--TTTTACTACCTCAA
98378445 CCCCCAA
1 CCCCCAA
98378452 AACATTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.28
23 18 0.72
ACGTcount: A:0.24, C:0.47, G:0.02, T:0.27
Consensus pattern (21 bp):
CCCCCAATTTTACTACCTCAA
Found at i:98380387 original size:19 final size:18
Alignment explanation
Indices: 98380363--98380401 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
98380353 CCTAGTGGTC
*
98380363 CTTGGAGACAGTGTTCGCA
1 CTTGGAG-CAGTGTTCACA
*
98380382 CTTGGAGGAGTGTTCACA
1 CTTGGAGCAGTGTTCACA
98380400 CT
1 CT
98380402 AAGAAGCGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (18 bp):
CTTGGAGCAGTGTTCACA
Found at i:98382717 original size:20 final size:19
Alignment explanation
Indices: 98382686--98382739 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
98382676 GATAATTCAT
*
98382686 AACAATTTTTAAAAAAATAC
1 AACAAATTTTAAAAAAAT-C
98382706 AA-AATATTTT-AAAAAATC
1 AACAA-ATTTTAAAAAAATC
98382724 AACAAATTTTAAAAAA
1 AACAAATTTTAAAAAA
98382740 GTTTATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 8 0.27
19 16 0.53
20 6 0.20
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (19 bp):
AACAAATTTTAAAAAAATC
Found at i:98382732 original size:18 final size:19
Alignment explanation
Indices: 98382686--98382739 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
98382676 GATAATTCAT
*
98382686 AACAATTTTTAAAAAAATAC
1 AACAAATTTT-AAAAAATAC
98382706 AA-AATATTTTAAAAAAT-C
1 AACAA-ATTTTAAAAAATAC
98382724 AACAAATTTTAAAAAA
1 AACAAATTTTAAAAAA
98382740 GTTTATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 14 0.45
19 11 0.35
20 6 0.19
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (19 bp):
AACAAATTTTAAAAAATAC
Found at i:98384337 original size:29 final size:29
Alignment explanation
Indices: 98384305--98384448 Score: 173
Period size: 29 Copynumber: 4.9 Consensus size: 29
98384295 GAATATCTAT
*
98384305 TATGAAAAGGGATTGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
*
98384334 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
* *
98384363 TATGAAAAGGGATGGTGACGACCATCGAT
1 TATGAAAAGGGATGGTGACGACCATCAAC
* **
98384392 TAATGAAAATGGATGGTTTCGACCATCGAA-
1 T-ATGAAAAGGGATGGTGACGACCATC-AAC
** *
98384422 TATGAAAAGGGACAGTTACGACCATCA
1 TATGAAAAGGGATGGTGACGACCATCA
98384449 TTTAGCACAC
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.01
29 75 0.75
30 23 0.23
31 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:98384426 original size:59 final size:56
Alignment explanation
Indices: 98384265--98384447 Score: 188
Period size: 58 Copynumber: 3.1 Consensus size: 56
98384255 GGTGTATTAG
* ** * *
98384265 CGACCATCGAATATGAAAAGGGATAGTTTTGAATATCTATTATGAAAAGGGATTGTGA
1 CGACCATCGAATATGAAAAGGGAT-GGTTTGACCATC-AATATGAAAAGGGATAGTGA
* *
98384323 CGACCATC-AACTATGAAAAGGGATGGTGATGACCATCAACTATGAAAAGGGATGGTGA
1 CGACCATCGAA-TATGAAAAGGGATGGT-TTGACCATCAA-TATGAAAAGGGATAGTGA
* * * *
98384381 CGACCATCGATTAATGAAAATGGATGGTTTCGACCATCGAATATGAAAAGGGACAGTTA
1 CGACCATCGAAT-ATGAAAAGGGATGGTTT-GACCATC-AATATGAAAAGGGATAGTGA
98384440 CGACCATC
1 CGACCATC
98384448 ATTTAGCACA
Statistics
Matches: 106, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
57 5 0.05
58 54 0.51
59 45 0.42
60 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (56 bp):
CGACCATCGAATATGAAAAGGGATGGTTTGACCATCAATATGAAAAGGGATAGTGA
Found at i:98386694 original size:25 final size:26
Alignment explanation
Indices: 98386656--98386763 Score: 82
Period size: 25 Copynumber: 4.3 Consensus size: 26
98386646 CATGTAAACT
**
98386656 GGAAGCTCTTTCGAGCCATATAA-CG
1 GGAAGCTCAATCGAGCCATATAATCG
***
98386681 GGAAGCTCAATCGAGTTGTAT-ATCG
1 GGAAGCTCAATCGAGCCATATAATCG
*
98386706 AGAAGCTC-ATACGAGCCATA-AATCG
1 GGAAGCTCAAT-CGAGCCATATAATCG
* ** *
98386731 AGAAGCTCAAGAGAGTCAT-TAATCG
1 GGAAGCTCAATCGAGCCATATAATCG
98386756 GGAAGCTC
1 GGAAGCTC
98386764 GTGAGAGCCA
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
24 3 0.05
25 61 0.94
26 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.21
Consensus pattern (26 bp):
GGAAGCTCAATCGAGCCATATAATCG
Found at i:98388302 original size:3 final size:3
Alignment explanation
Indices: 98388294--98388333 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
98388284 TTTGTCGTTA
*
98388294 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GTGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
98388334 ATATATCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 32 0.94
4 2 0.06
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:98388698 original size:29 final size:30
Alignment explanation
Indices: 98388641--98388698 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
98388631 TATATCATCT
* *
98388641 TATGTATACATTCTTAAATACTATGTTATA
1 TATGTATACATTCTTAAATACCATATTATA
* *
98388671 TATGTATATATT-TTTAATACCATATTAT
1 TATGTATACATTCTTAAATACCATATTAT
98388699 GTATATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (30 bp):
TATGTATACATTCTTAAATACCATATTATA
Found at i:98388717 original size:23 final size:25
Alignment explanation
Indices: 98388550--98388710 Score: 83
Period size: 23 Copynumber: 6.5 Consensus size: 25
98388540 AGGTATATAT
*
98388550 TGTATATA-TTTT-ATA-TATATTA
1 TGTATATATTTTTAATACCATATTA
**
98388572 TGTATATATTTTTAATGTC--ATTA
1 TGTATATATTTTTAATACCATATTA
98388595 -GTTATATATTTCTT-ATA-C-TATTCCA
1 TG-TATATATTT-TTAATACCATATT--A
* * *
98388620 TGTATGTA-TTTT-ATATCATCTTA
1 TGTATATATTTTTAATACCATATTA
* * *
98388643 TGTATACATTCTTAAATACTATGTTATATA
1 TGTATATATT-TTTAATACCA---TAT-TA
98388673 TGTATATATTTTTAATACCATATTA
1 TGTATATATTTTTAATACCATATTA
98388698 TGTATATATTTTT
1 TGTATATATTTTT
98388711 GTACATAGTA
Statistics
Matches: 107, Mismatches: 14, Indels: 33
0.69 0.09 0.21
Matches are distributed among these distances:
22 10 0.09
23 34 0.32
24 8 0.07
25 26 0.24
26 8 0.07
29 10 0.09
30 11 0.10
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (25 bp):
TGTATATATTTTTAATACCATATTA
Found at i:98388891 original size:23 final size:21
Alignment explanation
Indices: 98388854--98388895 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
98388844 TATTACTATA
98388854 ACTATTATTTATTAGTATTTT
1 ACTATTATTTATTAGTATTTT
98388875 ACTATTACTATTATTAGTATT
1 ACTATTA-T-TTATTAGTATT
98388896 ATTTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
ACTATTATTTATTAGTATTTT
Found at i:98388901 original size:27 final size:25
Alignment explanation
Indices: 98388840--98388901 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 25
98388830 TTATACGTTC
*
98388840 TTATTATTACTATAACTATTATTTA
1 TTATTTTTACTATAACTATTATTTA
*
98388865 TTAGTATTTTACTATTACTATTATTAGTA
1 TTA-T-TTTTACTATAACTATTATT--TA
98388894 TTATTTTT
1 TTATTTTT
98388902 TTAAATCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 3 0.10
26 1 0.03
27 21 0.68
28 1 0.03
29 5 0.16
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TTATTTTTACTATAACTATTATTTA
Found at i:98389062 original size:19 final size:21
Alignment explanation
Indices: 98389030--98389088 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
98389020 ATATGTATAT
*
98389030 ATATAGTATGTATGTATTTTTA
1 ATATA-TATATATGTATTTTTA
98389052 ATAT-TAT-TATGTATTTTTTTA
1 ATATATATATATGTA--TTTTTA
98389073 ATATATATATATGTAT
1 ATATATATATATGTAT
98389089 ATGTGTATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 6 0.18
20 3 0.09
21 11 0.33
22 7 0.21
23 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
ATATATATATATGTATTTTTA
Found at i:98389062 original size:23 final size:23
Alignment explanation
Indices: 98389026--98389088 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
98389016 TATTATATGT
98389026 ATATATATAGTATGTATGTATTTTTA
1 ATATATATA-TATGTAT-T-TTTTTA
98389052 ATAT-TAT-TATGTATTTTTTTA
1 ATATATATATATGTATTTTTTTA
98389073 ATATATATATATGTAT
1 ATATATATATATGTAT
98389089 ATGTGTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.29
22 4 0.11
23 14 0.40
25 3 0.09
26 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (23 bp):
ATATATATATATGTATTTTTTTA
Found at i:98389992 original size:64 final size:64
Alignment explanation
Indices: 98389919--98390129 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
98389909 CTGGGCCAGA
*
98389919 GCCCTTTTCAGATTACAATAAATTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAATTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * **** * ** *
98389983 GCCCATTTCAAAATAC-ATGCAACATCATTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-AT--TGGGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
98390045 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
98390056 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAATTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
98390120 GCCCATTTCA
1 GCCCATTTCA
98390130 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 34
0.62 0.17 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.25
65 5 0.05
66 2 0.02
67 9 0.09
68 6 0.06
69 6 0.06
70 9 0.09
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAATTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:98390131 original size:137 final size:137
Alignment explanation
Indices: 98389885--98390171 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
98389875 TATTGGGCCT
** *
98389885 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAATTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
98389950 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCATTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98390015 CATATGC
131 CATATGC
98390022 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
98390087 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98390152 CATATGC
131 CATATGC
98390159 AAGCCCATTTGGG
1 AAGCCCATTTGGG
98390172 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:98390456 original size:25 final size:27
Alignment explanation
Indices: 98390419--98390472 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
98390409 TCAAACATGC
98390419 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
98390445 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
98390471 AT
1 AT
98390473 AACTGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:98391984 original size:26 final size:26
Alignment explanation
Indices: 98391955--98392038 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
98391945 CATGAAATTC
* *
98391955 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
98391981 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
98392007 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
98392033 TTATCA
1 TTATCA
98392039 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:98392577 original size:23 final size:23
Alignment explanation
Indices: 98392507--98392591 Score: 66
Period size: 23 Copynumber: 3.6 Consensus size: 23
98392497 ATCTTATGAA
*
98392507 TATATATTATTTTTAATAACTACAT
1 TATATA-TATTTTTAAT-ACTATAT
** **
98392532 TATGCACGTATTTTTAACGCTATAT
1 TAT--ATATATTTTTAATACTATAT
*
98392557 TATATATATTTTTAATACTAT-G
1 TATATATATTTTTAATACTATAT
98392579 TATATAT-TTTTTA
1 TATATATATTTTTA
98392592 TTCTTATTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
21 6 0.12
22 7 0.15
23 14 0.29
25 11 0.23
26 9 0.19
27 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (23 bp):
TATATATATTTTTAATACTATAT
Found at i:98392593 original size:27 final size:27
Alignment explanation
Indices: 98392563--98392615 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
98392553 ATATTATATA
*
98392563 TATTTTTAATACTA-TGTATATATTTTT
1 TATTCTTAATACTACT-TATATATTTTT
* *
98392590 TATTCTTATTATTACTTATATATTTT
1 TATTCTTAATACTACTTATATATTTT
98392616 AATAAATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (27 bp):
TATTCTTAATACTACTTATATATTTTT
Found at i:98392659 original size:3 final size:3
Alignment explanation
Indices: 98392651--98392712 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
98392641 TTAGCATTGT
98392651 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98392699 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
98392713 CTTGCTTTCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:98395418 original size:26 final size:26
Alignment explanation
Indices: 98395381--98395489 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
98395371 TGATACAAAT
98395381 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
98395407 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
98395432 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98395458 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98395484 TGATAA
1 TGATAA
98395490 GAATATCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98395436 original size:51 final size:52
Alignment explanation
Indices: 98395381--98395489 Score: 211
Period size: 51 Copynumber: 2.1 Consensus size: 52
98395371 TGATACAAAT
98395381 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
98395432 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
98395484 TGATAA
1 TGATAA
98395490 GAATATCATG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 47 0.82
52 10 0.18
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:98396343 original size:24 final size:24
Alignment explanation
Indices: 98396311--98396359 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
98396301 TAGAAGATAT
98396311 ATGAGTCTATTTTAGGGAAAATTA
1 ATGAGTCTATTTTAGGGAAAATTA
*
98396335 ATGATTCTATTTTAGGGAAAATTA
1 ATGAGTCTATTTTAGGGAAAATTA
98396359 A
1 A
98396360 CGGAACTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (24 bp):
ATGAGTCTATTTTAGGGAAAATTA
Found at i:98400905 original size:33 final size:33
Alignment explanation
Indices: 98400868--98400936 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
98400858 CTTCAGCCGC
98400868 CGCATACCCCTCAGCCTTGACCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGACCACCACGCCCCA
* ** *
98400901 CGCATGCCCCTCAGCCTTGGTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGACCACCACGCCCCA
98400934 CGC
1 CGC
98400937 GTCTGACACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.17, C:0.52, G:0.16, T:0.14
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGACCACCACGCCCCA
Found at i:98402116 original size:20 final size:21
Alignment explanation
Indices: 98402093--98402132 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
98402083 TTGTTATATT
*
98402093 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
98402113 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
98402133 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:98402152 original size:3 final size:3
Alignment explanation
Indices: 98402028--98402137 Score: 91
Period size: 3 Copynumber: 37.7 Consensus size: 3
98402018 TTTTTGTTTA
* *
98402028 TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
98402076 TAT T-C TGT TGT TA- TAT TAC TAT TAT TGT TA- TAT TAT CAC TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
98402121 TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
98402138 CTACAACTAT
Statistics
Matches: 84, Mismatches: 20, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
2 5 0.06
3 79 0.94
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:98402322 original size:21 final size:20
Alignment explanation
Indices: 98402275--98402342 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
98402265 TTCTTTTCTG
*
98402275 TTTTATTACTATTATTAATAT
1 TTTTATTACTATTA-TATTAT
**
98402296 CATTATTACTATTACTATTAT
1 TTTTATTACTATTA-TATTAT
*
98402317 TTTTATTTCTATT-T-TTAT
1 TTTTATTACTATTATATTAT
98402335 TTTTATTA
1 TTTTATTA
98402343 ACATATTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 11 0.28
19 1 0.03
21 27 0.69
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTATTACTATTATATTAT
Found at i:98402454 original size:15 final size:15
Alignment explanation
Indices: 98402434--98402464 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98402424 TATTATTTTC
98402434 TATTTATTACTATTA
1 TATTTATTACTATTA
98402449 TATTTATTACTATTA
1 TATTTATTACTATTA
98402464 T
1 T
98402465 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:98402571 original size:15 final size:15
Alignment explanation
Indices: 98402553--98402590 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
98402543 CCCACTTAGC
98402553 TATTATTACTATTAT
1 TATTATTACTATTAT
*
98402568 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
98402583 AATTATTA
1 TATTATTA
98402591 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:98407324 original size:6 final size:6
Alignment explanation
Indices: 98407282--98407325 Score: 63
Period size: 6 Copynumber: 7.3 Consensus size: 6
98407272 AAAGGCAAAG
*
98407282 GAAAAA -AAAAA GAAAAA AAGAAAA GAAAAA GAAAAA GAAAAA GA
1 GAAAAA GAAAAA GAAAAA GA-AAAA GAAAAA GAAAAA GAAAAA GA
98407326 GACCCAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:98407899 original size:4 final size:4
Alignment explanation
Indices: 98407892--98407935 Score: 79
Period size: 4 Copynumber: 10.8 Consensus size: 4
98407882 TCAAAAAAAA
98407892 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AGAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A-AAG AAA
98407936 AAGGAGAGGC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 35 0.90
5 4 0.10
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:98409113 original size:64 final size:64
Alignment explanation
Indices: 98409005--98409132 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
98408995 TCATTCATAA
* *
98409005 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGTATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
98409069 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATTGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
98409133 AGATACATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:98409258 original size:43 final size:43
Alignment explanation
Indices: 98409205--98409664 Score: 274
Period size: 43 Copynumber: 10.7 Consensus size: 43
98409195 ATCCACAAGC
*
98409205 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* ** *
98409248 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * * ** *
98409290 CTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGA-AGGGT
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAG-GCTAA-ATTTACA-GAT
* * * ** *
98409334 CTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * *
98409377 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
** * * ** * **
98409420 CTT-GTCACCCTAAGCAGTAGGGAAACA-GATCAAAGATAAAGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AAATTTACA-GAT
* * *
98409464 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * * ** * * **
98409507 CTT-AACACCTTAAGCAGTAGGGAAACAGATCGAAGGTGA-TGGG
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAG-GCTAAATTTACAGAT
* ** * *
98409550 CTTTAACCCCTTAAGCAGTAGGGTAACAAACTGAATTTACAGAC
1 CTTAAACCCC-TAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * *
98409594 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
*
98409637 CTTATAA-CCCTAAGCAGTAGGGAAACAG
1 CTTA-AACCCCTAAGCAGTAGGGTAACAG
98409665 ATCGAAGGCG
Statistics
Matches: 312, Mismatches: 85, Indels: 40
0.71 0.19 0.09
Matches are distributed among these distances:
41 2 0.01
42 33 0.11
43 185 0.59
44 87 0.28
45 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (43 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
Found at i:98409476 original size:87 final size:86
Alignment explanation
Indices: 98409203--98409621 Score: 296
Period size: 87 Copynumber: 4.8 Consensus size: 86
98409193 GAATCCACAA
* *
98409203 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTACA-CCCTAAGCAGTAG
* * * * **
98409268 GGTAACAGACCGAA-TTGCA-G
65 GGAAACAGATCAAAGATAAAGG
** * * * * * * *
98409288 ATCTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAA--GACGAAGGGTCTTGACCCCCTAAGC
1 GCCTTAACCCCCTAAGCAGTAG-GGTAACAGGCT-GAATTTAC--A-GATCTT-ACACCCTAAGC
* * * ** *
98409349 AGTAGGGTAACA-AGCCGAATTTACA-G
60 AGTAGGGAAACAGA-TCAAAGATAAAGG
* * * * *
98409375 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTGTCACCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTT-ACACCCTAAGCAGTAG
98409440 GGAAACAGATCAAAGATAAAGG
65 GGAAACAGATCAAAGATAAAGG
* * * *
98409462 GCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCTTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTT-ACACCCTAAGCAGTAG
* * * *
98409527 GGAAACAGATCGAAGGTGATGG
65 GGAAACAGATCAAAGATAAAGG
* * ** * *
98409549 GCTTTAACCCCTTAAGCAGTAGGGTAACAAACTGAATTTACAGACCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTACA-CCCTAAGCAGTAG
*
98409614 GGTAACAG
65 GGAAACAG
98409622 GTTGAATTCA
Statistics
Matches: 266, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
83 2 0.01
84 2 0.01
85 25 0.09
86 68 0.26
87 165 0.62
88 2 0.01
89 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (86 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTACACCCTAAGCAGTAGG
GAAACAGATCAAAGATAAAGG
Found at i:98409489 original size:130 final size:129
Alignment explanation
Indices: 98409203--98409540 Score: 446
Period size: 130 Copynumber: 2.6 Consensus size: 129
98409193 GAATCCACAA
98409203 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
* * * * *
98409268 GGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGG
66 GGTAACAGACCGAATTACAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACAAAGG
* * * ** *
98409332 GTCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
*** * *
98409397 GGTAACAGGTTGAATTCACAGATCTTGTCACCCTAAGCAGTAG-GGAAACAGATCAAAGATAAAG
66 GGTAACAGACCGAATT-ACAGATCTTATCACCCTAAGCAGTAGTGG-AACAGATCAAAGACAAAG
98409461 G
129 G
* * *
98409462 GCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAATCTT-AACACCTTAAGCAGTA
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAAC-CCCTAAGCAGTA
* *
98409526 GGGAAACAGATCGAA
65 GGGTAACAGACCGAA
98409541 GGTGATGGGC
Statistics
Matches: 178, Mismatches: 28, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
129 77 0.43
130 101 0.57
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (129 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
GGTAACAGACCGAATTACAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACAAAGG
Found at i:98409588 original size:217 final size:216
Alignment explanation
Indices: 98409248--98409712 Score: 655
Period size: 217 Copynumber: 2.1 Consensus size: 216
98409238 ATTTACAGAT
* * * ** * * * *
98409248 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTACAAATCTTAACACCCTAAGCAGTAGTGG
* * *
98409313 AGCAGATCGAAGACGAAGGGTCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
66 AACAGATCGAAGACGAAGGGTCTTAACCCCCTAAGCAGTAGGGTAACAAACCGAATTTACAGACC
* *
98409378 TTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTGTCACCCTAAGCAGTAGGGA
131 TTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGGGA
* *
98409443 AACAGATCAAAGATAAAGGGC
196 AACAGATCAAAGACAAAGAGC
*
98409464 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCTTAAGCAGTAG-G
1 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAA-TTACAAATCTTAACACCCTAAGCAGTAGTG
** * * *
98409528 GAAACAGATCGAAGGTGATGGG-CTTTAACCCCTTAAGCAGTAGGGTAACAAACTGAATTTACAG
65 G-AACAGATCGAAGACGAAGGGTC-TTAACCCCCTAAGCAGTAGGGTAACAAACCGAATTTACAG
98409592 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAG
128 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAG
* * * *
98409657 GGAAACAGATCGAAGGCGATGAGC
193 GGAAACAGATCAAAGACAAAGAGC
98409681 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTA
1 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTA
98409713 GAAATCAAAT
Statistics
Matches: 220, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
216 32 0.15
217 188 0.85
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (216 bp):
CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTACAAATCTTAACACCCTAAGCAGTAGTGG
AACAGATCGAAGACGAAGGGTCTTAACCCCCTAAGCAGTAGGGTAACAAACCGAATTTACAGACC
TTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGGGA
AACAGATCAAAGACAAAGAGC
Found at i:98409597 original size:130 final size:130
Alignment explanation
Indices: 98409463--98409707 Score: 366
Period size: 130 Copynumber: 1.9 Consensus size: 130
98409453 AGATAAAGGG
* * * *
98409463 CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTTACAAATCTTA-ACACCTTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATA-ACCCTAAGCAGTAG
* * * *
98409527 GGAAACAGATCGAAGGTGATGGGCTTTAACCCCTTAAGCAGTAGGGTAACAAACTGAATTTACAG
65 GGAAACAGATCGAAGGCGATGAGCCTTAACCCCCTAAGCAGTAGGGTAACAAACTGAATTTACAG
98409592 A
130 A
* * *
98409593 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGG
*
98409658 GAAACAGATCGAAGGCGATGAGCCTTAACCCCCTAAGTAGTAGGGTAACA
66 GAAACAGATCGAAGGCGATGAGCCTTAACCCCCTAAGCAGTAGGGTAACA
98409708 GGCTAGAAAT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
130 101 0.99
131 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (130 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGG
GAAACAGATCGAAGGCGATGAGCCTTAACCCCCTAAGCAGTAGGGTAACAAACTGAATTTACAGA
Found at i:98411537 original size:12 final size:12
Alignment explanation
Indices: 98411520--98411572 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
98411510 TTTTTTGTTG
*
98411520 TTTATATTTTTA
1 TTTATATTATTA
98411532 TTTATATTATTA
1 TTTATATTATTA
98411544 TTAGTATCATTATTA
1 TT--TAT-ATTATTA
98411559 -TTATTATTATTA
1 TTTA-TATTATTA
98411571 TT
1 TT
98411573 ATCTCCATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 22 0.63
13 2 0.06
14 4 0.11
15 7 0.20
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:98411544 original size:3 final size:3
Alignment explanation
Indices: 98411536--98411602 Score: 73
Period size: 3 Copynumber: 21.3 Consensus size: 3
98411526 TTTTTATTTA
* *
98411536 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT TAT TAT TAT CTCCAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT
98411583 CTAT TAT TAT TAT TAT TAT T
1 -TAT TAT TAT TAT TAT TAT T
98411603 CTCTTGTTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
2 1 0.02
3 49 0.89
4 2 0.04
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:98411556 original size:24 final size:23
Alignment explanation
Indices: 98411529--98411594 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
98411519 GTTTATATTT
98411529 TTATTTATATTATTATTAGTATC
1 TTATTTATATTATTATTAGTATC
*
98411552 ATTA-TTATTATTATTATTATTATC
1 -TTATTTA-TATTATTATTAGTATC
* *
98411576 TCCATTTCTATTATTATTA
1 T-TATTTATATTATTATTA
98411595 TTATTATTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 4 0.11
24 30 0.83
25 2 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTTATATTATTATTAGTATC
Found at i:98411641 original size:20 final size:21
Alignment explanation
Indices: 98411616--98411655 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
98411606 TTGTTATATT
*
98411616 ACTATTATTGTTAC-ATTATC
1 ACTATTATTCTTACTATTATC
*
98411636 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
98411656 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.55
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:98411653 original size:12 final size:12
Alignment explanation
Indices: 98411536--98411663 Score: 56
Period size: 12 Copynumber: 11.2 Consensus size: 12
98411526 TTTTTATTTA
*
98411536 TATTATTATTAG
1 TATTATTATTAC
* *
98411548 TATCATTATTAT
1 TATTATTATTAC
*
98411560 TATTATTATTAT
1 TATTATTATTAC
** *
98411572 TATCT-CCATTTC
1 TAT-TATTATTAC
*
98411584 TATTATTATTAT
1 TATTATTATTAC
*
98411596 TATTATT-CT-C
1 TATTATTATTAC
*
98411606 TTGTTA-TATTAC
1 -TATTATTATTAC
*
98411618 TATTATTGTTAC
1 TATTATTATTAC
*
98411630 ----ATTATCAC
1 TATTATTATTAC
* *
98411638 TATTTTTCTTAC
1 TATTATTATTAC
98411650 TATTATTATTAC
1 TATTATTATTAC
98411662 TA
1 TA
98411664 CAACTATTAT
Statistics
Matches: 82, Mismatches: 24, Indels: 20
0.65 0.19 0.16
Matches are distributed among these distances:
8 6 0.07
10 1 0.01
11 11 0.13
12 63 0.77
13 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:98411757 original size:24 final size:23
Alignment explanation
Indices: 98411729--98411776 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
98411719 ATTGATTTTA
98411729 TATCATTACTATTATAATAATTAT
1 TATCATTACTATTATAAT-ATTAT
*
98411753 TATCATTACTATTATTATATTAT
1 TATCATTACTATTATAATATTAT
98411776 T
1 T
98411777 TGGCTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (23 bp):
TATCATTACTATTATAATATTAT
Found at i:98411765 original size:12 final size:12
Alignment explanation
Indices: 98411729--98411767 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
98411719 ATTGATTTTA
98411729 TATCATTACTAT
1 TATCATTACTAT
* * *
98411741 TATAATAATTAT
1 TATCATTACTAT
98411753 TATCATTACTAT
1 TATCATTACTAT
98411765 TAT
1 TAT
98411768 TATATTATTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (12 bp):
TATCATTACTAT
Found at i:98411832 original size:15 final size:15
Alignment explanation
Indices: 98411814--98411851 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
98411804 CCCACTTAGC
98411814 TATTATTACTATTAT
1 TATTATTACTATTAT
*
98411829 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
98411844 AATTATTA
1 TATTATTA
98411852 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:98420355 original size:72 final size:68
Alignment explanation
Indices: 98420275--98420412 Score: 195
Period size: 72 Copynumber: 2.0 Consensus size: 68
98420265 TAATTAAATT
* * *
98420275 TAATCACTTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAAT
1 TAATCACTTTAATATTAAATTAATAAAATA-TTAT-T--AAGATAAACATTAAATTAAACTCAAT
98420340 ATTAAGA
62 ATTAAGA
**
98420347 TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAACTCAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAACATTAAATTAAACTCAATATTA
98420412 A
66 A
98420413 ATCTATTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 27 0.44
70 1 0.02
71 4 0.07
72 29 0.48
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATATTATTAAGATAAACATTAAATTAAACTCAATATTA
AGA
Found at i:98420370 original size:20 final size:18
Alignment explanation
Indices: 98420323--98420371 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
98420313 CAAGATAAAC
98420323 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
98420340 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
98420360 ATTAAATTAATA
1 ATTAAATTAATA
98420372 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:98420428 original size:68 final size:71
Alignment explanation
Indices: 98420284--98420431 Score: 160
Period size: 68 Copynumber: 2.1 Consensus size: 71
98420274 TTAATCACTT
* * *
98420284 TAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAAGATA
1 TAATATTAAATTAATAAAATATTTATCTA-AAGATAAACATTAAATTAAACTCAATATTAAGATA
***
98420349 ATCACTT
65 ATCAAAA
** *
98420356 TAATATTAAATTAATAAAATA-TTAT-T-AAGATAAGTATTAAATTAAACTCAATATTAA-ATCT
1 TAATATTAAATTAATAAAATATTTATCTAAAGATAAACATTAAATTAAACTCAATATTAAGAT-A
*
98420417 ATTAAAA
65 ATCAAAA
98420424 TAATATTA
1 TAATATTA
98420432 TTTTTGGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
67 2 0.03
68 38 0.58
70 1 0.02
71 4 0.06
72 20 0.31
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (71 bp):
TAATATTAAATTAATAAAATATTTATCTAAAGATAAACATTAAATTAAACTCAATATTAAGATAA
TCAAAA
Found at i:98422407 original size:27 final size:27
Alignment explanation
Indices: 98422359--98422500 Score: 153
Period size: 27 Copynumber: 5.2 Consensus size: 27
98422349 GTGACGAAGT
98422359 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
* *
98422386 CACTAGAACCGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
98422413 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
* *
98422440 CACCAGGATAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
** * *
98422467 CACCAGATTAGATAAATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
98422495 CACCAG
1 CACCAG
98422501 TACGCTTCCT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.08
27 72 0.74
28 17 0.18
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:98422431 original size:54 final size:54
Alignment explanation
Indices: 98422359--98422500 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
98422349 GTGACGAAGT
* * *
98422359 CACCAGATACAGAT-ATTGTGGCAGAGCCACTAGAACCGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
98422413 CACCAGATCAGATAATTGTGGCATAGCCACCAGGATAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
98422467 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
98422501 TACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 55 0.69
55 20 0.25
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:98422887 original size:8 final size:8
Alignment explanation
Indices: 98422871--98422900 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
98422861 CTCAAAATAC
98422871 CGGCTTTT
1 CGGCTTTT
*
98422879 CGGCATTT
1 CGGCTTTT
98422887 CGGCTTTT
1 CGGCTTTT
98422895 CGGCTT
1 CGGCTT
98422901 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:98425586 original size:20 final size:20
Alignment explanation
Indices: 98425561--98425599 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
98425551 AATGCTATAC
*
98425561 AGAGGCACTGAAGTGCAAAA
1 AGAGGCACTAAAGTGCAAAA
98425581 AGAGGCACTAAAGTGCAAA
1 AGAGGCACTAAAGTGCAAA
98425600 CAAAGTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGGCACTAAAGTGCAAAA
Found at i:98430982 original size:47 final size:48
Alignment explanation
Indices: 98430928--98431059 Score: 203
Period size: 47 Copynumber: 2.8 Consensus size: 48
98430918 TCACATCGAT
*
98430928 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCTCAG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* * *
98430976 -AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* *
98431023 AACTACCTATACCATTGCTCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTA
98431060 TAATTCGTAC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
47 43 0.57
48 33 0.43
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (48 bp):
AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
Found at i:98433706 original size:131 final size:132
Alignment explanation
Indices: 98433571--98433821 Score: 355
Period size: 131 Copynumber: 1.9 Consensus size: 132
98433561 AAGATATGAA
* * *
98433571 TGAAATTTTGAAGGGATGCTCGATTACTTTGGA-CAAACGCAAAATTGCAACCCAACACGTTAGG
1 TGAAATTTCGAAGGGATACTCGATTA-TTTGGAGCAAAAGCAAAATTGCAACCCAACACGTTAGG
* ** *
98433635 GCACGA-TTCTGCGAATTGCTAAGTATCGAATCTCGTCTTCGTTTTGAAGAA-TTTTAAAAGACG
65 GCACGATTTC-GCGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAACTTTTAAAAGACG
98433698 TGAG
129 TGAG
* * * * *
98433702 TGAAATTTCGAAGTGATATTTGATTATTTTGAGCAAAAGCGAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTGGAGCAAAAGCAAAATTGCAACCCAACACGTTAGGG
98433767 CACGATTTCGCGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAACTTTT
66 CACGATTTCGCGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAACTTTT
98433822 GAATGAATGA
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
130 5 0.05
131 93 0.89
132 7 0.07
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (132 bp):
TGAAATTTCGAAGGGATACTCGATTATTTGGAGCAAAAGCAAAATTGCAACCCAACACGTTAGGG
CACGATTTCGCGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAACTTTTAAAAGACGTG
AG
Found at i:98434407 original size:15 final size:15
Alignment explanation
Indices: 98434387--98434416 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98434377 TATATGATAG
*
98434387 TACAAAAATATATGA
1 TACAAAAATACATGA
98434402 TACAAAAATACATGA
1 TACAAAAATACATGA
98434417 CAAAAAGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (15 bp):
TACAAAAATACATGA
Found at i:98438495 original size:2 final size:2
Alignment explanation
Indices: 98438488--98438522 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
98438478 CTTTTAAAAT
98438488 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98438523 GTGTTTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:98439415 original size:131 final size:130
Alignment explanation
Indices: 98439171--98439502 Score: 398
Period size: 131 Copynumber: 2.5 Consensus size: 130
98439161 TAATTATTCA
** * *
98439171 TTTAAAAACTCTTTAAAACGAAGGCGATGTTCGATATTTGGCAATTCGTGGAATCATGCCCTATC
1 TTTAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATC
* * * * *
98439236 ATGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGT
65 GTGCTAGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATCT
98439301 -
130 C
* *
98439301 TTTCCAAAAACTCTTTGAAATGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
1 TTT--AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTAT
* ** * * * *
98439366 CGTGTTAGGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCAGTCAT
64 CGTGCTAGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCAT
98439430 CTC
128 CTC
* * ** *
98439433 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGACAATTCAGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATC
98439498 GTGCT
65 GTGCT
98439503 TGTAATAGCC
Statistics
Matches: 171, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
130 41 0.24
131 87 0.51
132 43 0.25
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (130 bp):
TTTAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCG
TGCTAGGTTGCAATTTCTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATCTC
Found at i:98439907 original size:29 final size:30
Alignment explanation
Indices: 98439874--98439930 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
98439864 CAAAATCGAT
98439874 AGCAAACAAA-AA-AGAAAAAACAACGAAGA
1 AGCAAACAAATAATAGAAAAAA-AACGAAGA
*
98439903 AGCAAACAAATAATAGAAACAAAACGAA
1 AGCAAACAAATAATAGAAAAAAAACGAA
98439931 TGTATATTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 10 0.40
30 8 0.32
31 7 0.28
ACGTcount: A:0.70, C:0.14, G:0.12, T:0.04
Consensus pattern (30 bp):
AGCAAACAAATAATAGAAAAAAAACGAAGA
Found at i:98441198 original size:27 final size:28
Alignment explanation
Indices: 98441168--98441224 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
98441158 ATCATATATT
* *
98441168 TTAAACTCCT-TATTAATTATTTTTAAA
1 TTAAACTCATATATTAATTATTTTAAAA
* *
98441195 TT-AACTTATATATTATTTATTTTAAAA
1 TTAAACTCATATATTAATTATTTTAAAA
98441222 TTA
1 TTA
98441225 TTCATATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (28 bp):
TTAAACTCATATATTAATTATTTTAAAA
Found at i:98441200 original size:26 final size:27
Alignment explanation
Indices: 98441178--98441233 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
98441168 TTAAACTCCT
* *
98441178 TATTAATTATTTTTAAATTAACTTATA
1 TATTAATTATTTTAAAATTAACTCATA
* *
98441205 TATTATTTATTTTAAAATT-ATTCATA
1 TATTAATTATTTTAAAATTAACTCATA
98441231 TAT
1 TAT
98441234 GTCATTCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTAATTATTTTAAAATTAACTCATA
Found at i:98441295 original size:27 final size:26
Alignment explanation
Indices: 98441258--98441308 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
98441248 TGCTTTCTAC
*
98441258 ATTATTTATTTTAAACTTGTTTTATGT
1 ATTATTCATTTTAAA-TTGTTTTATGT
98441285 ATTATTCATTTTAAATTGTTTTAT
1 ATTATTCATTTTAAATTGTTTTAT
98441309 TGTTTACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (26 bp):
ATTATTCATTTTAAATTGTTTTATGT
Found at i:98442243 original size:26 final size:26
Alignment explanation
Indices: 98442206--98442289 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
98442196 TGATACAAAT
*
98442206 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98442232 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98442258 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98442284 TGATAA
1 TGATAA
98442290 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98448509 original size:2 final size:2
Alignment explanation
Indices: 98448502--98448530 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98448492 CTATTTTGGG
98448502 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98448531 AATACGACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98452747 original size:14 final size:14
Alignment explanation
Indices: 98452728--98452755 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98452718 CAACATAACT
98452728 CATATAATCATGTA
1 CATATAATCATGTA
98452742 CATATAATCATGTA
1 CATATAATCATGTA
98452756 TATAAGTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
CATATAATCATGTA
Found at i:98452821 original size:50 final size:50
Alignment explanation
Indices: 98452767--98452868 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
98452757 ATAAGTAACC
98452767 AATATTATCTTATAACCTCAATTACATTCACTTCCCAAAATGAAAAGCAT
1 AATATTATCTTATAACCTCAATTACATTCACTTCCCAAAATGAAAAGCAT
98452817 AATATTATCTTATAACCTCAATTACATTCACTTCCCAAAATGAAAAGCAT
1 AATATTATCTTATAACCTCAATTACATTCACTTCCCAAAATGAAAAGCAT
98452867 AA
1 AA
98452869 GCCATCTTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.31
Consensus pattern (50 bp):
AATATTATCTTATAACCTCAATTACATTCACTTCCCAAAATGAAAAGCAT
Found at i:98453756 original size:33 final size:36
Alignment explanation
Indices: 98453712--98453797 Score: 111
Period size: 39 Copynumber: 2.3 Consensus size: 36
98453702 AAACATTAAG
* *
98453712 TAAAAAATAAAACAATTAATATTTAGATTCGGATTA
1 TAAATAATACAACAATTAATATTTAGATTCGGATTA
98453748 TAAATAAAAATACAACAATTAATATTTAGATTCGGATTA
1 TAAAT---AATACAACAATTAATATTTAGATTCGGATTA
*
98453787 TAGA-AATACAA
1 TAAATAATACAA
98453798 ACCAGAACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
35 7 0.16
36 4 0.09
39 33 0.75
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.31
Consensus pattern (36 bp):
TAAATAATACAACAATTAATATTTAGATTCGGATTA
Found at i:98453767 original size:39 final size:39
Alignment explanation
Indices: 98453714--98453788 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
98453704 ACATTAAGTA
98453714 AAAAATAAAACAATTAATATTTAGATTCGGATTATAAAT
1 AAAAATAAAACAATTAATATTTAGATTCGGATTATAAAT
*
98453753 AAAAATACAACAATTAATATTTAGATTCGGATTATA
1 AAAAATAAAACAATTAATATTTAGATTCGGATTATA
98453789 GAAATACAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.33
Consensus pattern (39 bp):
AAAAATAAAACAATTAATATTTAGATTCGGATTATAAAT
Found at i:98454519 original size:19 final size:20
Alignment explanation
Indices: 98454483--98454521 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
98454473 AATACTTATT
98454483 TATTATTTTATACACATGTA
1 TATTATTTTATACACATGTA
*
98454503 TATTATTTT-TGCACATGTA
1 TATTATTTTATACACATGTA
98454522 CACTCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (20 bp):
TATTATTTTATACACATGTA
Found at i:98455519 original size:29 final size:29
Alignment explanation
Indices: 98455486--98455597 Score: 143
Period size: 29 Copynumber: 3.9 Consensus size: 29
98455476 AGTACAAAGA
* * **
98455486 CTTGGTGGACTTATACATATGGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
*
98455515 CTTGGTGAACTCATACATGCGGACTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
* * *
98455544 CTTGATGAACTTATACATGCAGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
*
98455573 CTTGGTGAACTCATACATGTGGATT
1 CTTGGTGAACTCATACATGCGGATT
98455598 TATACTCACA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (29 bp):
CTTGGTGAACTCATACATGCGGATTCATG
Found at i:98455683 original size:28 final size:28
Alignment explanation
Indices: 98455623--98455683 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
98455613 TTCTTGCAGG
98455623 CTCTTGCATGAAAGATAGTCCCTACGGA
1 CTCTTGCATGAAAGATAGTCCCTACGGA
* * *
98455651 TTCTTGCTTGAAAGATAGTCCCTACTGA
1 CTCTTGCATGAAAGATAGTCCCTACGGA
98455679 CTCTT
1 CTCTT
98455684 CATATAGCTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (28 bp):
CTCTTGCATGAAAGATAGTCCCTACGGA
Found at i:98457664 original size:20 final size:20
Alignment explanation
Indices: 98457628--98457666 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98457618 AGGAGTTAGA
**
98457628 TTACATTTTAATTTTTTTAC
1 TTACATTTTAACCTTTTTAC
98457648 TTACATTTTAACCTTTTTA
1 TTACATTTTAACCTTTTTA
98457667 TTTAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.62
Consensus pattern (20 bp):
TTACATTTTAACCTTTTTAC
Found at i:98458001 original size:21 final size:21
Alignment explanation
Indices: 98457967--98458026 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 21
98457957 TAAATAATTG
*
98457967 TAAAAAATAT-AGAAACTTAT
1 TAAAAATTATAAGAAACTTAT
*
98457987 TAAAAATTATAAG-AATTTAT
1 TAAAAATTATAAGAAACTTAT
*
98458007 TTAAAATCTATTAA-AAACTT
1 TAAAAAT-TA-TAAGAAACTT
98458027 GGACAAACAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 21 0.66
21 4 0.12
22 7 0.22
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (21 bp):
TAAAAATTATAAGAAACTTAT
Found at i:98470456 original size:22 final size:23
Alignment explanation
Indices: 98470425--98470486 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
98470415 GTGTCGTAGG
98470425 AATTAGGATTTAATAAAATAA-AAT
1 AATT-GGA-TTAATAAAATAATAAT
* **
98470449 AATT-GATTAATTAGGTAATAAT
1 AATTGGATTAATAAAATAATAAT
98470471 AATTGGATTAATAAAA
1 AATTGGATTAATAAAA
98470487 ATCTAATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
21 9 0.30
22 9 0.30
23 8 0.27
24 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.35
Consensus pattern (23 bp):
AATTGGATTAATAAAATAATAAT
Found at i:98470522 original size:54 final size:56
Alignment explanation
Indices: 98470435--98470545 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 56
98470425 AATTAGGATT
*
98470435 TAATAAAATAAAATAATTGATTAATTAGG-TAATAATAATTGGATTAATAAAAATC
1 TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
*
98470490 TAATAAAAT-AATTAATTAATTAATTAGGTAATAATAATAATTGGATTAATAAAAAT
1 TAATAAAATAAAATAATTAATTAATTAGG--ATAATAATAATTGGATTAATAAAAAT
98470546 ATATTAGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
54 17 0.33
55 9 0.18
57 25 0.49
ACGTcount: A:0.55, C:0.01, G:0.08, T:0.36
Consensus pattern (56 bp):
TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
Found at i:98471725 original size:34 final size:34
Alignment explanation
Indices: 98471656--98471726 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
98471646 GAACCCTATT
* * **
98471656 GCCTTAATGCATGTGAGCCTATATTTCTATACGA
1 GCCTTAATACATGTGAGCCCATATAACTATACGA
* *
98471690 GCCTTAATACATGTGAGCCCATATAAGTATGCGA
1 GCCTTAATACATGTGAGCCCATATAACTATACGA
98471724 GCC
1 GCC
98471727 CCTGTGATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (34 bp):
GCCTTAATACATGTGAGCCCATATAACTATACGA
Found at i:98474498 original size:84 final size:84
Alignment explanation
Indices: 98474357--98474525 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
98474347 ATGATAAGAG
* * *
98474357 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGGTGTTGGAACACTATTAAAATAAGTTGAA
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
98474422 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
*
98474441 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAT
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
98474506 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
98474525 A
1 A
98474526 GATTTATTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (84 bp):
AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
AATATAAAAGAAGATAAGT
Found at i:98476971 original size:11 final size:11
Alignment explanation
Indices: 98476955--98477001 Score: 58
Period size: 11 Copynumber: 4.0 Consensus size: 11
98476945 ATTTTAATTG
98476955 AATAAAATATT
1 AATAAAATATT
98476966 AATAAATATATTAT
1 AATAAA-ATA-T-T
*
98476980 AATAAAATAAT
1 AATAAAATATT
98476991 AATAAAATATT
1 AATAAAATATT
98477002 CAACCAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 17 0.55
12 3 0.10
13 4 0.13
14 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAAAATATT
Found at i:98476987 original size:25 final size:24
Alignment explanation
Indices: 98476955--98477001 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
98476945 ATTTTAATTG
*
98476955 AATAAAATATTAATAAATATATTAT
1 AATAAAATAATAATAAA-ATATTAT
98476980 AATAAAATAATAATAAAATATT
1 AATAAAATAATAATAAAATATT
98477002 CAACCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATAAAATAATAATAAAATATTAT
Found at i:98485097 original size:21 final size:21
Alignment explanation
Indices: 98485072--98485111 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
98485062 AACGGGACTG
*
98485072 CTGATGTGGGAAGTTAACTAA
1 CTGATGTGGCAAGTTAACTAA
*
98485093 CTGATGTGGCCAGTTAACT
1 CTGATGTGGCAAGTTAACT
98485112 TGCCACGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAA
Found at i:98486308 original size:2 final size:2
Alignment explanation
Indices: 98486301--98486330 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98486291 GCAAACAAAC
98486301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98486331 GCATCATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98486838 original size:33 final size:33
Alignment explanation
Indices: 98486801--98486878 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
98486791 TGGCCCTGCC
* *
98486801 ATGGTCTTACACTC-GTAATGTCATAACCCAGTT
1 ATGGTCTTACACTCAG-AATGCCATAACCCAGCT
* *
98486834 ATGGTCTTATCA-TCAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTCAGAATGCCATAACCCAGCT
98486867 ATGGTCTTACAC
1 ATGGTCTTACAC
98486879 ATATACATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
32 2 0.05
33 33 0.87
34 3 0.08
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACTCAGAATGCCATAACCCAGCT
Done.