Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 329 of 345
Found at i:98487132 original size:15 final size:15
Alignment explanation
Indices: 98487114--98487148 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
98487104 AACCTAACCC
98487114 AAAAAAAA-AACAAAG
1 AAAAAAAAGAA-AAAG
98487129 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
98487144 AAAAA
1 AAAAA
98487149 CCTACCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:98487162 original size:15 final size:15
Alignment explanation
Indices: 98487144--98487177 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
98487134 AAAGAAAAAG
98487144 AAAAACCT-ACCCAA
1 AAAAACCTAACCCAA
98487158 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
98487173 AAAAA
1 AAAAA
98487178 AAGAAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.65, C:0.29, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:98489786 original size:12 final size:12
Alignment explanation
Indices: 98489766--98489801 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
98489756 ATTCATTTAA
98489766 CATTCATGCATT
1 CATTCATGCATT
*
98489778 CATTTATGCATT
1 CATTCATGCATT
*
98489790 CATTCATTCATT
1 CATTCATGCATT
98489802 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:98496931 original size:68 final size:69
Alignment explanation
Indices: 98496677--98496939 Score: 339
Period size: 70 Copynumber: 3.7 Consensus size: 69
98496667 GAGTTAAGCC
* *
98496677 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
98496742 GAGGTAT
63 GAGGTAT
* * * * * *
98496749 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGA
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
98496814 GGTAT
65 GGTAT
*
98496819 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
98496883 AGGTAT
64 AGGTAT
* * ** *
98496889 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
98496940 TTTTTTTTGT
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
68 31 0.19
69 3 0.02
70 85 0.51
71 34 0.20
72 14 0.08
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
GTAT
Found at i:98497050 original size:72 final size:71
Alignment explanation
Indices: 98496950--98497102 Score: 234
Period size: 72 Copynumber: 2.1 Consensus size: 71
98496940 TTTTTTTTGT
** * *
98496950 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
*
98497015 TTTTTG
66 TTTCTG
* *
98497021 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCA
1 T-TTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
98497086 ATTTCTG
65 ATTTCTG
98497093 TTTTCAATTT
1 TTTTCAATTT
98497103 ACGTTGTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 9 0.12
72 64 0.88
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (71 bp):
TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
TTTCTG
Found at i:98497083 original size:262 final size:254
Alignment explanation
Indices: 98496512--98497099 Score: 1016
Period size: 255 Copynumber: 2.3 Consensus size: 254
98496502 TTTCAAGGAA
*
98496512 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
98496577 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACGCTGAGGTATTTTTAGTTT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACGCTGAGGTATTTTTAGTTT
98496642 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
131 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-ATTTTTGTTTTTCAAAATCAACTCA
98496707 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
195 TATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
98496767 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
98496832 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTTAGTT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGG-ACGCTGAGGTA---TT--TT
98496897 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-TTTTTGTTTTTCAAAATC
125 TA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTATTTTTGTTTTTCAAAATC
98496961 AACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTT
189 AACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTT
98497026 T
254 T
* * * * * *
98497027 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
98497092 GTTTTCAA
64 GTTTTCAA
98497100 TTTACGTTGT
Statistics
Matches: 317, Mismatches: 7, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
255 108 0.34
256 11 0.03
259 2 0.01
260 86 0.27
261 4 0.01
262 106 0.33
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (254 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACGCTGAGGTATTTTTAGTTT
TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTATTTTTGTTTTTCAAAATCAACTCAT
ATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:98497194 original size:212 final size:213
Alignment explanation
Indices: 98496911--98497361 Score: 565
Period size: 212 Copynumber: 2.1 Consensus size: 213
98496901 TTTTAAATTG
* ** *
98496911 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTTTTTGTTTTTCAAAATCAACTCATATTGCTAG
1 ACTCATATTGCGAGA-GTGAGTTAAACCTTTTTTTTACTTTTTCAAAATCAACTCATATTGCGAG
* * * * *** **
98496976 AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGT-TTTAATTTCAACTCA
65 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCA
* * *
98497039 TATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCTGAGGTATTTTCAATTTCTG-TTTTCAATT
130 TATTGCGAGAGGCGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATT
* *
98497102 TACG-TTGTTC-AAGAATCA
195 TACGCCT-TTCAAAAAATCA
98497120 ACTCATATTGCGAGAGT-AGGTTAAACCTTTTAATTTCTACTTTTTCAAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGTGA-GTTAAACCTTTT--TTT-TACTTTTTC-AAAATCAACTCATATTG
98497184 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAA
61 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAA
* *
98497249 CTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTT
126 CTCATATTGCGAGAGGCGAGTTGAGCCTCAGGT-ACACGCCGAGGTATTTTCAATTTCCGTTTTT
**
98497314 CAATTTTTGCCTTTCAAAAAAATCA
190 CAATTTACGCCTTTC-AAAAAATCA
98497339 ACTCATATTGCGAGAGGTGAGTT
1 ACTCATATTGCGAGA-GTGAGTT
98497362 GAGCCTCAGG
Statistics
Matches: 205, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
207 1 0.00
208 13 0.06
209 15 0.07
210 3 0.01
211 7 0.03
212 61 0.30
213 3 0.01
214 36 0.18
216 23 0.11
217 14 0.07
218 1 0.00
219 22 0.11
220 5 0.02
221 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (213 bp):
ACTCATATTGCGAGAGTGAGTTAAACCTTTTTTTTACTTTTTCAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCAT
ATTGCGAGAGGCGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
ACGCCTTTCAAAAAATCA
Found at i:98497272 original size:74 final size:75
Alignment explanation
Indices: 98497166--98497306 Score: 221
Period size: 74 Copynumber: 1.9 Consensus size: 75
98497156 CTACTTTTTC
* *
98497166 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAATTT
98497230 CTGTTGTCAA
66 CTGTTGTCAA
* * *
98497240 AAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAATT
98497305 TC
65 TC
98497307 CGTTTTTCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 38 0.63
76 22 0.37
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAATTT
CTGTTGTCAA
Found at i:98497433 original size:74 final size:76
Alignment explanation
Indices: 98497327--98497471 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
98497317 TTTTTGCCTT
*
98497327 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
98497389 CAATTTCTATTG
65 CAATTTCTATTG
* * *
98497401 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
98497466 AATTTC
66 AATTTC
98497472 ATTTTTCAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTATTG
Found at i:98497438 original size:165 final size:166
Alignment explanation
Indices: 98497166--98497642 Score: 705
Period size: 165 Copynumber: 2.9 Consensus size: 166
98497156 CTACTTTTTC
98497166 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
98497231 TGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTA
66 TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTA
* *
98497296 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AA
131 TTTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAA
98497331 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
98497396 TATTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTA
66 TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTA
*
98497461 TTTTCAATTT-CATTTTTCAATTTCTGCATTTCAAAAAAA
131 TTTTCAATTTCCGTTTTTCAATTTCTGCATTTC----AAA
*
98497500 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * * * ** * *
98497565 TGTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTA
66 TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTA
*
98497626 TTTTCAATTTCTGTTTT
131 TTTTCAATTTCCGTTTT
98497643 CAAAAATCAA
Statistics
Matches: 284, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
164 19 0.07
165 156 0.55
166 4 0.01
167 34 0.12
169 71 0.25
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (166 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTA
TTTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAA
Found at i:98497583 original size:72 final size:73
Alignment explanation
Indices: 98497499--98497839 Score: 364
Period size: 72 Copynumber: 4.6 Consensus size: 73
98497489 TTTCAAAAAA
*
98497499 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
98497564 CTGTTTTC
66 CTGTTTTC
* * ** ** *
98497572 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
98497636 CTGTTTTC
66 CTGTTTTC
* * * * *
98497644 -AAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
98497707 TTCTATCTTTC
64 TTCTGT-TTTC
* ** * *
98497718 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTTTTTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGG-TATTTTCA
* *
98497783 ATTTATATTTTTTC
62 A-TT-TCTGTTTTC
* *
98497797 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGG
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
98497840 TTACATCGGT
Statistics
Matches: 220, Mismatches: 37, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
71 3 0.01
72 95 0.43
73 21 0.10
74 4 0.02
76 34 0.15
77 6 0.03
78 9 0.04
79 45 0.20
80 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:98497880 original size:13 final size:13
Alignment explanation
Indices: 98497864--98497896 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
98497854 TCTTCTAGTA
98497864 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
98497877 TTTTC-AATTCTG
1 TTTTCAAAATCTG
98497889 TTTTCAAA
1 TTTTCAAA
98497897 TCCTCATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.27, C:0.15, G:0.06, T:0.52
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:98498021 original size:30 final size:30
Alignment explanation
Indices: 98497985--98498046 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
98497975 CAACTCATAT
98497985 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
98498015 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
98498045 TG
1 TG
98498047 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:98498289 original size:88 final size:87
Alignment explanation
Indices: 98498049--98498258 Score: 404
Period size: 87 Copynumber: 2.4 Consensus size: 87
98498039 AATTTCTGTT
98498049 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGGACCTCCAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGACCTCCAGTCACATATCGAGGTATTTTC
98498113 AAAATCTGCTTTTCAAGTTAAG
66 AAAATCTGCTTTTCAAGTTAAG
98498135 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGACCTCCAGTCACATATCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGACCTCCAGTCACATATCGAGGTATTTTC
98498200 AAAATCTGCTTTTCAAGTTAAG
66 AAAATCTGCTTTTCAAGTTAAG
98498222 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTG
98498259 AGCCTTGGCT
Statistics
Matches: 122, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
86 4 0.03
87 86 0.70
88 32 0.26
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (87 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGACCTCCAGTCACATATCGAGGTATTTTC
AAAATCTGCTTTTCAAGTTAAG
Found at i:98498963 original size:16 final size:16
Alignment explanation
Indices: 98498943--98498980 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
98498933 AACCTAACCC
*
98498943 AAAAAAAAAAAACAAAG
1 AAAAAAAAAGAA-AAAG
98498960 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
98498976 AAAAA
1 AAAAA
98498981 CCTACCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:98498990 original size:16 final size:17
Alignment explanation
Indices: 98498971--98499011 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 17
98498961 AAAAAAAAGA
98498971 AAAAGAAAAACCT-A-CC
1 AAAA-AAAAACCTAACCC
98498987 -AAAAAAAACCTAACCC
1 AAAAAAAAACCTAACCC
98499003 AAAAAAAAA
1 AAAAAAAAA
98499012 AAGAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.36
15 4 0.18
16 2 0.09
17 8 0.36
ACGTcount: A:0.71, C:0.22, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAAAAACCTAACCC
Found at i:98498993 original size:14 final size:16
Alignment explanation
Indices: 98498976--98499010 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
98498966 AAAGAAAAAG
98498976 AAAAACCT-A-CCAAA
1 AAAAACCTAACCCAAA
98498990 AAAAACCTAACCCAAA
1 AAAAACCTAACCCAAA
98499006 AAAAA
1 AAAAA
98499011 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 10 0.53
ACGTcount: A:0.69, C:0.26, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCAAA
Found at i:98499320 original size:22 final size:22
Alignment explanation
Indices: 98499285--98499345 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
98499275 TGCATCTTTT
**
98499285 TCTTTTTTCCTCTTCTTTCGAA
1 TCTTTTTTTTTCTTCTTTCGAA
* **
98499307 TCTTTTTTTTTCTT-TTTTGTT
1 TCTTTTTTTTTCTTCTTTCGAA
*
98499328 TGTTTTTTTTTCTTCTTT
1 TCTTTTTTTTTCTTCTTT
98499346 ATATATACAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.03, C:0.16, G:0.05, T:0.75
Consensus pattern (22 bp):
TCTTTTTTTTTCTTCTTTCGAA
Found at i:98499333 original size:11 final size:10
Alignment explanation
Indices: 98499307--98499341 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
98499297 TTCTTTCGAA
98499307 TCTTTTTTTT
1 TCTTTTTTTT
98499317 TCTTTTTTGTT
1 TCTTTTTT-TT
*
98499328 TGTTTTTTTT
1 TCTTTTTTTT
98499338 TCTT
1 TCTT
98499342 CTTTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.86
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:98499409 original size:10 final size:10
Alignment explanation
Indices: 98499394--98499423 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
98499384 CCACCGTGGG
98499394 CGGTGGCCGA
1 CGGTGGCCGA
98499404 CGGTGGCCGA
1 CGGTGGCCGA
98499414 CGGTGGCCGA
1 CGGTGGCCGA
98499424 GACGGGGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.50, T:0.10
Consensus pattern (10 bp):
CGGTGGCCGA
Found at i:98499789 original size:29 final size:30
Alignment explanation
Indices: 98499722--98499790 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 30
98499712 TTTATGTACA
* *
98499722 TATGTATATATATATTTTTGCACATATCAT
1 TATGTATATATATATTGTTGCAAATATCAT
* * **
98499752 TAT-TTTATATATATTGTTGTAAAT-TTTT
1 TATGTATATATATATTGTTGCAAATATCAT
98499780 TATGTATATAT
1 TATGTATATAT
98499791 TTTTTATGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 5 0.16
29 23 0.74
30 3 0.10
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.57
Consensus pattern (30 bp):
TATGTATATATATATTGTTGCAAATATCAT
Found at i:98505351 original size:13 final size:13
Alignment explanation
Indices: 98505333--98505366 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
98505323 ATGCTAGAAA
98505333 GTGAAAGTAATCC
1 GTGAAAGTAATCC
98505346 GTGAAAGTAATCC
1 GTGAAAGTAATCC
98505359 GTGAAAGT
1 GTGAAAGT
98505367 CTGAAGATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (13 bp):
GTGAAAGTAATCC
Found at i:98507559 original size:122 final size:122
Alignment explanation
Indices: 98507339--98507559 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
98507329 GAATTATGTG
* * * * * * *
98507339 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
98507404 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
98507461 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
98507526 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
98507560 ATCCGGGTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 85 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (122 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:98507683 original size:40 final size:40
Alignment explanation
Indices: 98507556--98507685 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
98507546 ATGCTGGAAA
* *
98507556 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
98507596 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
98507636 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
98507676 TTATATCCGG
1 TTATATCCGG
98507686 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:98511492 original size:26 final size:26
Alignment explanation
Indices: 98511433--98511567 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
98511423 TGATACAAAT
98511433 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
98511458 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98511484 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98511510 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98511536 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98511562 TGATAA
1 TGATAA
98511568 GAATTTCATG
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98516975 original size:16 final size:16
Alignment explanation
Indices: 98516950--98516980 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98516940 AATATATACA
98516950 AAAATAAAAATAAAAC
1 AAAATAAAAATAAAAC
*
98516966 AAAATCAAAATAAAA
1 AAAATAAAAATAAAA
98516981 GAGACTAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAAAATAAAAC
Found at i:98529883 original size:18 final size:18
Alignment explanation
Indices: 98529860--98529894 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
98529850 GTTGCATTTT
98529860 ATTTTTGTTTT-TAGTTTA
1 ATTTTT-TTTTCTAGTTTA
98529878 ATTTTTTTTTCTAGTTT
1 ATTTTTTTTTCTAGTTT
98529895 TTCTTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (18 bp):
ATTTTTTTTTCTAGTTTA
Found at i:98530847 original size:12 final size:12
Alignment explanation
Indices: 98530824--98530865 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
98530814 GATGACGTTA
98530824 AAATG-ATAAAT
1 AAATGAATAAAT
*
98530835 AAATGAATGAAT
1 AAATGAATAAAT
*
98530847 AAATAAATAAAT
1 AAATGAATAAAT
*
98530859 AGATGAA
1 AAATGAA
98530866 GAAACATAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (12 bp):
AAATGAATAAAT
Found at i:98530850 original size:16 final size:15
Alignment explanation
Indices: 98530825--98530854 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98530815 ATGACGTTAA
98530825 AATGATAAATAAATG
1 AATGATAAATAAATG
98530840 AATGAATAAATAAAT
1 AATG-ATAAATAAAT
98530855 AAATAGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (15 bp):
AATGATAAATAAATG
Found at i:98532112 original size:5 final size:6
Alignment explanation
Indices: 98532097--98532122 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
98532087 TATATATATA
98532097 TTTTTC TTTTTC TTTTTC TTTTTC TT
1 TTTTTC TTTTTC TTTTTC TTTTTC TT
98532123 CGTTTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:98541731 original size:25 final size:25
Alignment explanation
Indices: 98541703--98541755 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
98541693 ATAACTAGAG
98541703 AATGTGTACATAAAAGTAAAGTTAT
1 AATGTGTACATAAAAGTAAAGTTAT
98541728 AATGTGTACATAAAAGTAAAGTTAT
1 AATGTGTACATAAAAGTAAAGTTAT
98541753 AAT
1 AAT
98541756 ATTGATACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (25 bp):
AATGTGTACATAAAAGTAAAGTTAT
Found at i:98545440 original size:25 final size:24
Alignment explanation
Indices: 98545395--98545441 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
98545385 TTTATGGAAT
*
98545395 TTATTTGAATGTGAAATTGTATTC
1 TTATTTGAATGTGAAAGTGTATTC
98545419 TTATTATGAAT-TGAAAAGTGTAT
1 TTATT-TGAATGTG-AAAGTGTAT
98545442 GTGTAGTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (24 bp):
TTATTTGAATGTGAAAGTGTATTC
Found at i:98559644 original size:13 final size:13
Alignment explanation
Indices: 98559626--98559680 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
98559616 AACTTTTTCT
98559626 TAAATATTATCAC
1 TAAATATTATCAC
98559639 TAAATA--ATC-C
1 TAAATATTATCAC
*
98559649 TAACTATTATCAC
1 TAAATATTATCAC
*
98559662 TAAATATAATCAC
1 TAAATATTATCAC
98559675 TAAATA
1 TAAATA
98559681 ATTCAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 6 0.17
11 3 0.08
12 3 0.08
13 24 0.67
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:98565138 original size:6 final size:6
Alignment explanation
Indices: 98565127--98565169 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
98565117 CATACATACT
98565127 TACATA TACATA TACATA TACATA TACATA TACATA TACATA T
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA T
98565170 CGGCATTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (6 bp):
TACATA
Found at i:98583735 original size:46 final size:46
Alignment explanation
Indices: 98583660--98583978 Score: 376
Period size: 46 Copynumber: 7.0 Consensus size: 46
98583650 TTATCTTCGA
* * * * *
98583660 CATGATGCCATAGTATCTTTC-ACCTATGGTTTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACC-ATGGTCTTACACA-TTTCATAT
* * ** ***
98583706 CATGTTGCCACGGTATATTTCAACCATGGTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * ** *
98583753 CATGTTGCAAT-ATATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
98583798 CACGTTGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
98583844 CATGTT-TCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
98583889 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
98583935 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
98583979 TTCAGAGAGC
Statistics
Matches: 243, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 57 0.23
46 172 0.71
47 14 0.06
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:98583830 original size:92 final size:91
Alignment explanation
Indices: 98583672--98583978 Score: 377
Period size: 91 Copynumber: 3.4 Consensus size: 91
98583662 TGATGCCATA
* * * * *
98583672 GTATCTTTC-ACCTATGGTTTTACTCATTTTC-TGTCATGTTGCCACGGTATATTTCAACCATGG
1 GTATCTTTCAACC-ATGGTCTTACACA-TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGG
** ***
98583735 TCTTATTCATTTTCCCGTCATGTTGCAAT-
64 TCTTACACA-TTTCATATCATGTTGC-ATG
* ** *
98583764 ATATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTTTCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
98583829 TTACACATTTCATATCATGTTTCATG
66 TTACACATTTCATATCATGTTGCATG
* * *
98583855 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
98583920 TTACACATTTCATATCAGGTTGCCATG
66 TTACACATTTCATATCATGTTG-CATG
98583947 GTATCTTTCAACCATGGTCTTACACATTTCAT
1 GTATCTTTCAACCATGGTCTTACACATTTCAT
98583979 TTCAGAGAGC
Statistics
Matches: 189, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
90 2 0.01
91 94 0.50
92 90 0.48
93 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (91 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCATATCATGTTGCATG
Found at i:98583883 original size:137 final size:138
Alignment explanation
Indices: 98583665--98583978 Score: 384
Period size: 137 Copynumber: 2.3 Consensus size: 138
98583655 TTCGACATGA
* * * *
98583665 TGCCATAGTATCTTTC-ACCTATGGTTTTACTCATTTTC-TGTCATGTTGCCACGGTATATTTCA
1 TGCCATGGTATCTTTCAACC-ATGGTCTTACACA-TTTCATATCATGTTGCCACGGTATATTTCA
** * * * * **
98583728 ACCATGGTCTTATTCATTTTCCCGTCATGTTGCAAT-ATATCTTTCAACCATGGTCTTATTCATT
64 ACCATGGTCTTACACA-TTTCACATCAGGTTACAATGATATCTTTCAACCATGGTCTTACACATT
*
98583792 TCATGTCACGT
128 TCATATCACGT
* * * *
98583803 TGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATATCATGTT-TCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCACGGTATATTTCAAC
* * *
98583867 CATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCACATCAGGTTACAATGATATCTTTCAACCATGGTCTTACACATTTCA
*
98583932 TATCAGGT
131 TATCACGT
98583940 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
98583979 TTCAGAGAGC
Statistics
Matches: 151, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
136 13 0.09
137 102 0.68
138 33 0.22
139 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCACGGTATATTTCAAC
CATGGTCTTACACATTTCACATCAGGTTACAATGATATCTTTCAACCATGGTCTTACACATTTCA
TATCACGT
Found at i:98586376 original size:17 final size:18
Alignment explanation
Indices: 98586340--98586381 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
98586330 ACACCTTTAA
*
98586340 TTTTCCCTTTTCTTCTTTC
1 TTTTCTCTTTTC-TCTTTC
98586359 TTTTCTCTTTTC-CTTTC
1 TTTTCTCTTTTCTCTTTC
98586376 TTTTCT
1 TTTTCT
98586382 TCCCCTACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
19 11 0.50
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTCTCTTTTCTCTTTC
Found at i:98586649 original size:18 final size:19
Alignment explanation
Indices: 98586600--98586649 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
98586590 TATAATATAA
98586600 TTATTTAATTAATAAATATC
1 TTATTTAA-TAATAAATATC
98586620 TT-TTATAAAATAATAAATAT-
1 TTATT-T--AATAATAAATATC
98586640 TTATTTAATA
1 TTATTTAATA
98586650 TCTAATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 4 0.15
19 2 0.08
20 6 0.23
21 12 0.46
22 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTTAATAATAAATATC
Found at i:98588054 original size:46 final size:44
Alignment explanation
Indices: 98588001--98588175 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
98587991 TGTTTGGGCA
98588001 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATG-GAATG
* * * *
98588047 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA-GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGGAA-T--G
* **
98588092 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATG-GAATG
* * *
98588140 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
98588176 GGCGGGTTAC
Statistics
Matches: 106, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 59 0.56
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGGAATG
Found at i:98588150 original size:93 final size:93
Alignment explanation
Indices: 98587997--98588169 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
98587987 AGGATGTTTG
* ***
98587997 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCGAACACCCGAACTCGTTGAG
98588062 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
98588090 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCGAACACCCGAACTCGTTGAG
*
98588155 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
98588170 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCGAACACCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:98589603 original size:19 final size:21
Alignment explanation
Indices: 98589557--98589603 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
98589547 TATAATAAAT
* *
98589557 TAATTTAATATCATTTATTAC
1 TAATTAAATATCATATATTAC
98589578 TAA-TAAATAT-ATATATTA-
1 TAATTAAATATCATATATTAC
98589596 TAATTAAA
1 TAATTAAA
98589604 ATTTAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.13
19 11 0.48
20 6 0.26
21 3 0.13
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TAATTAAATATCATATATTAC
Found at i:98591942 original size:24 final size:24
Alignment explanation
Indices: 98591915--98591964 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
98591905 TCGCTAAAGA
* *
98591915 TTCACTTAAATCACTCGAGGTTTT
1 TTCACTCAAATCACTCGAGGTGTT
98591939 TTCACTCAAATCACTCGAGGTGTT
1 TTCACTCAAATCACTCGAGGTGTT
98591963 TT
1 TT
98591965 AAGGACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (24 bp):
TTCACTCAAATCACTCGAGGTGTT
Found at i:98600932 original size:11 final size:11
Alignment explanation
Indices: 98600916--98600942 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98600906 TGTTTGCTTG
98600916 TTTTGAATTTA
1 TTTTGAATTTA
98600927 TTTTGAATTTA
1 TTTTGAATTTA
98600938 TTTTG
1 TTTTG
98600943 TTTTAGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (11 bp):
TTTTGAATTTA
Found at i:98603045 original size:26 final size:26
Alignment explanation
Indices: 98602980--98603048 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
98602970 TTATGGATTC
*
98602980 TCTGAAGCTAGTGTTAGCAGCATCGA
1 TCTGAAGCTAGTGTTAGCAACATCGA
* * * *
98603006 ACT-AAGCTAGTGTTAGTAACCTTGA
1 TCTGAAGCTAGTGTTAGCAACATCGA
98603031 TCTGAAGCTAGTGTTAGC
1 TCTGAAGCTAGTGTTAGC
98603049 GGCCTGAGTA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
25 20 0.57
26 15 0.43
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
TCTGAAGCTAGTGTTAGCAACATCGA
Found at i:98603180 original size:25 final size:25
Alignment explanation
Indices: 98603161--98603208 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
98603151 TTAGCAGCAT
98603161 TGAACT-AAGCTAGTGTTAGCAATCC
1 TGAACTAAAGCTAGTGTTAGCAAT-C
*
98603186 TGATCTAAAGCTAGTGTTAGCAA
1 TGAACTAAAGCTAGTGTTAGCAA
98603209 CTCAAATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (25 bp):
TGAACTAAAGCTAGTGTTAGCAATC
Found at i:98605934 original size:61 final size:58
Alignment explanation
Indices: 98605860--98605993 Score: 137
Period size: 61 Copynumber: 2.3 Consensus size: 58
98605850 AGTAATTTTT
* * * * *
98605860 TAAAT-TTAATATTAAAGTGAT-TATCTTAATATTAAATTTAATTTAATATTTACTTTGTAGA
1 TAAATATT-ATATTAAAGTAATATAT-TTAATATCAAATTTAATGTAATACTTA-TCT-T-GA
* **
98605921 TAAATATTTTATTAATTTAATATATTTAATATCAAATTTAATGTAATACTTATCTTGA
1 TAAATATTATATTAAAGTAATATATTTAATATCAAATTTAATGTAATACTTATCTTGA
98605979 TAAATATTATATTAA
1 TAAATATTATATTAA
98605994 TTTAATATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
58 16 0.26
59 1 0.02
60 2 0.03
61 38 0.61
62 5 0.08
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (58 bp):
TAAATATTATATTAAAGTAATATATTTAATATCAAATTTAATGTAATACTTATCTTGA
Found at i:98605998 original size:58 final size:61
Alignment explanation
Indices: 98605885--98606001 Score: 168
Period size: 58 Copynumber: 2.0 Consensus size: 61
98605875 AGTGATTATC
* * * * *
98605885 TTAATATTAAATTTAATTTAATATTTACTTTGTAGATAAATATTTTATTAATTTAATATAT
1 TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATATAT
98605946 TTAATATCAAATTTAATGTAATACTTA-TCT-T-GATAAATATTATATTAATTTAATAT
1 TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATAT
98606002 TAAAATGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
58 24 0.47
59 1 0.02
60 2 0.04
61 24 0.47
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (61 bp):
TTAATATCAAATTTAATGTAATACTTACTCTGTAGATAAATATTATATTAATTTAATATAT
Found at i:98608701 original size:21 final size:21
Alignment explanation
Indices: 98608649--98608689 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
98608639 AGAGCTAAAC
98608649 GGAAACCCATAAGGGTTGAAA
1 GGAAACCCATAAGGGTTGAAA
98608670 GGAAACCCATAAGGGTTGAA
1 GGAAACCCATAAGGGTTGAA
98608690 CAGAAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
GGAAACCCATAAGGGTTGAAA
Found at i:98608838 original size:24 final size:24
Alignment explanation
Indices: 98608790--98608838 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
98608780 TGTGTAATTT
**
98608790 TCAATTCATCCTTTACATTTTTAG
1 TCAATTCATCCTTTACATTCGTAG
98608814 TCAATTCATCCTTTACATTCGTAG
1 TCAATTCATCCTTTACATTCGTAG
98608838 T
1 T
98608839 GCCATAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.06, T:0.47
Consensus pattern (24 bp):
TCAATTCATCCTTTACATTCGTAG
Found at i:98609453 original size:30 final size:30
Alignment explanation
Indices: 98609419--98609484 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
98609409 AAATATTCAT
*
98609419 AAAACCCTTACTAAAATAGAAATTTAATAC
1 AAAACCCTTAATAAAATAGAAATTTAATAC
98609449 AAAACCCTTAATAAAATAGAAATTTAATAC
1 AAAACCCTTAATAAAATAGAAATTTAATAC
*
98609479 CAAACC
1 AAAACC
98609485 ATAATATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (30 bp):
AAAACCCTTAATAAAATAGAAATTTAATAC
Found at i:98610851 original size:11 final size:11
Alignment explanation
Indices: 98610831--98610888 Score: 62
Period size: 11 Copynumber: 5.1 Consensus size: 11
98610821 TTATATACTA
98610831 AATAAAATAAT
1 AATAAAATAAT
*
98610842 AATAATATAAT
1 AATAAAATAAT
*
98610853 AATAAAATATCT
1 AATAAAATA-AT
* *
98610865 CATTAAAATATT
1 -AATAAAATAAT
98610877 AATAAAATAAT
1 AATAAAATAAT
98610888 A
1 A
98610889 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 28 0.74
12 2 0.05
13 8 0.21
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:98612681 original size:23 final size:22
Alignment explanation
Indices: 98612644--98612716 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
98612634 CGAACACACC
* * *
98612644 ATAGCTCGCAAGAGCGTCCTGAT
1 ATAGCTCACATGAGCAT-CTGAT
98612667 ATAGCTCACATGAGCATCTCGAT
1 ATAGCTCACATGAGCATCT-GAT
* * *
98612690 ATAAGCTCTCTTGAGCTTTCTGAT
1 AT-AGCTCACATGAGC-ATCTGAT
98612714 ATA
1 ATA
98612717 TGGTTCTTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
22 2 0.05
23 20 0.49
24 16 0.39
25 3 0.07
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (22 bp):
ATAGCTCACATGAGCATCTGAT
Found at i:98612714 original size:24 final size:23
Alignment explanation
Indices: 98612662--98612716 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
98612652 CAAGAGCGTC
98612662 CTGATAT-AGCTCACATGAGCAT
1 CTGATATAAGCTCACATGAGCAT
* * *
98612684 CTCGATATAAGCTCTCTTGAGCTTT
1 CT-GATATAAGCTCACATGAGC-AT
98612709 CTGATATA
1 CTGATATA
98612717 TGGTTCTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 17 0.63
25 3 0.11
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (23 bp):
CTGATATAAGCTCACATGAGCAT
Found at i:98614281 original size:31 final size:31
Alignment explanation
Indices: 98614246--98614309 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
98614236 CCTTTGCATG
98614246 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* ** *
98614277 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
98614308 TT
1 TT
98614310 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:98614552 original size:24 final size:24
Alignment explanation
Indices: 98614501--98614667 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
98614491 GCTTTATCAT
* *
98614501 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * **
98614526 ATAACTGGGGCAAAAACCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
98614550 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
98614573 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
98614597 ATAACTGGGGCATAAACCTTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
98614621 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
98614645 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98614668 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
23 23 0.18
24 93 0.73
25 11 0.09
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:98614601 original size:71 final size:71
Alignment explanation
Indices: 98614500--98614667 Score: 239
Period size: 71 Copynumber: 2.3 Consensus size: 71
98614490 TGCTTTATCA
*
98614500 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAACCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAACCCTTTCAATAACTGGGGCATA
98614564 AGCCCTTT
64 AGCCCTTT
* * * ** *
98614572 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAACCTTTTTGATAATTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAACCCTTTCAATAACTGGGGCATAAG
98614637 CCCTTT
66 CCCTTT
98614643 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
98614668 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 51 0.59
72 36 0.41
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAACCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:98614641 original size:48 final size:47
Alignment explanation
Indices: 98614520--98614668 Score: 199
Period size: 47 Copynumber: 3.1 Consensus size: 47
98614510 GGCCTAGCCT
* * * ** *
98614520 CTTTTAATAACTGGGGCAAAAACCCTTTCAATAACTGGGGCATAAGC
1 CTTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAAC
*
98614567 CCTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAAC
1 CTTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAAC
* *
98614614 CTTTTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA-AC
98614663 CTTTTT
1 CTTTTT
98614669 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 45 0.50
48 38 0.42
49 7 0.08
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (47 bp):
CTTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAAC
Found at i:98614742 original size:20 final size:20
Alignment explanation
Indices: 98614717--98614757 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
98614707 TTATGATTAC
98614717 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
98614737 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
98614757 A
1 A
98614758 CCATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:98614832 original size:25 final size:25
Alignment explanation
Indices: 98614800--98614847 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98614790 ATACATAAAC
* * *
98614800 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98614825 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98614848 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98616115 original size:27 final size:27
Alignment explanation
Indices: 98616086--98616667 Score: 708
Period size: 27 Copynumber: 21.6 Consensus size: 27
98616076 AGGTATTTTA
* * *
98616086 GTAATTTTGTAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
98616113 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
98616140 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
98616167 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
98616194 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
98616221 ATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
98616247 GTAATTATGTAAAT-TAGGGGTAAAACA
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
98616274 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
98616301 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
98616328 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
98616355 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
98616382 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
98616409 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
98616436 ATAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
98616463 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
98616490 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
98616517 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
98616544 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
98616571 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
98616598 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
98616625 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
98616652 GTAATTTTGTAAATCG
1 GTAATTCTGTAAATCG
98616668 GGAGTACTTT
Statistics
Matches: 485, Mismatches: 59, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.05
27 454 0.94
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:98622696 original size:25 final size:26
Alignment explanation
Indices: 98622668--98622719 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
98622658 AAGTTGTAAA
98622668 TAAAACAATATCTCTAGA-AATTTTC
1 TAAAACAATATCTCTAGATAATTTTC
* * *
98622693 TAAAATAATTTCTTTAGATAATTTTC
1 TAAAACAATATCTCTAGATAATTTTC
98622719 T
1 T
98622720 CTCCACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (26 bp):
TAAAACAATATCTCTAGATAATTTTC
Found at i:98622901 original size:59 final size:61
Alignment explanation
Indices: 98622828--98622945 Score: 168
Period size: 62 Copynumber: 2.0 Consensus size: 61
98622818 ATCACTGTAA
* * *
98622828 TATTAAATTGATATAATACTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAGTCT
1 TATTAAATTAATATAATACTTACTACAAGATAAATATTAAAATAAATTTAATATTAAGTCT
* *
98622887 TATTAAATTAATATAATATTTATCTACAAGATAAATATTAAAATAATTTTAATATTAAG
1 TATTAAATTAATATAATACTTA-CTACAAGATAAATATTAAAATAAATTTAATATTAAG
98622946 ATAATAACTT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 20 0.39
61 1 0.02
62 30 0.59
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.42
Consensus pattern (61 bp):
TATTAAATTAATATAATACTTACTACAAGATAAATATTAAAATAAATTTAATATTAAGTCT
Found at i:98636335 original size:7 final size:7
Alignment explanation
Indices: 98636319--98636425 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
98636309 AATAAATGAA
*
98636319 ATAATTT
1 ATAATAT
98636326 ATAATAT
1 ATAATAT
98636333 ATAATAT
1 ATAATAT
*
98636340 A-AAAAT
1 ATAATAT
* *
98636346 GTAAGTTT
1 ATAA-TAT
*
98636354 TTAA-A-
1 ATAATAT
*
98636359 ATAATGT
1 ATAATAT
98636366 ATAATAT
1 ATAATAT
*
98636373 A-AATAA
1 ATAATAT
98636379 ATAAATAT
1 AT-AATAT
98636387 ATAAGATAT
1 AT-A-ATAT
98636396 ATAAGT-T
1 ATAA-TAT
98636403 A-AA-AT
1 ATAATAT
98636408 ATAATAT
1 ATAATAT
98636415 ATAATA-
1 ATAATAT
98636421 ATAAT
1 ATAAT
98636426 TTACAAATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 34 0.44
8 14 0.18
9 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:98636389 original size:21 final size:21
Alignment explanation
Indices: 98636357--98636421 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
98636347 TAAGTTTTTA
*
98636357 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
98636377 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
98636398 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
98636420 AA
1 AA
98636422 TAATTTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:98636390 original size:28 final size:29
Alignment explanation
Indices: 98636359--98636419 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
98636349 AGTTTTTAAA
98636359 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
98636387 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
98636415 ATAAT
1 ATAAT
98636420 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:98636460 original size:12 final size:13
Alignment explanation
Indices: 98636441--98636471 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
98636431 AATTTTGAAA
98636441 ATATAAATAATAT
1 ATATAAATAATAT
98636454 A-ATAAATAATAT
1 ATATAAATAATAT
98636466 ATATAA
1 ATATAA
98636472 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:98636469 original size:16 final size:15
Alignment explanation
Indices: 98636446--98636476 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
98636436 TGAAAATATA
98636446 AATAATATAATAAAT
1 AATAATATAATAAAT
98636461 AATATATATAATAAAT
1 AATA-ATATAATAAAT
98636477 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:98636815 original size:18 final size:17
Alignment explanation
Indices: 98636779--98636911 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
98636769 AATCATATCT
98636779 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
98636798 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
98636816 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
98636833 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
98636851 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
*
98636868 TCTACGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
98636886 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
98636903 TCTAAGATT
1 TCTAAGATT
98636912 ACATATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:98636837 original size:35 final size:35
Alignment explanation
Indices: 98636779--98636920 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
98636769 AATCATATCT
98636779 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
98636816 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
98636851 TCTAAGATTGTATCATATCTACGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
98636886 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
98636921 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 85 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:98637526 original size:83 final size:83
Alignment explanation
Indices: 98637306--98637740 Score: 782
Period size: 83 Copynumber: 5.2 Consensus size: 83
98637296 TTCGATTTGT
* * * * *
98637306 AAGGATGTCAAATCATCTTGAGTCTGTTTGAAAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
98637371 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
98637389 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
98637454 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
98637473 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
98637538 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
98637556 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
98637621 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
98637639 AAGGATGCCAAACCATCTTGAGTCTGTTT-AGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
98637703 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
98637721 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
98637741 GATCTGCTTC
Statistics
Matches: 343, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
82 73 0.21
83 192 0.56
84 78 0.23
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:98637972 original size:119 final size:119
Alignment explanation
Indices: 98637676--98638255 Score: 1056
Period size: 119 Copynumber: 4.9 Consensus size: 119
98637666 TTAGAACATT
* * * * *
98637676 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
98637741 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT-
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
* *
98637794 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
98637859 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
98637913 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
98637978 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
98638032 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
98638097 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
98638151 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT-
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
98638215 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
98638256 CTTCGATCTG
Statistics
Matches: 449, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
118 151 0.34
119 298 0.66
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (119 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
Found at i:98638295 original size:44 final size:44
Alignment explanation
Indices: 98638247--98638424 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
98638237 TGAAGGTTAG
98638247 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
98638291 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * * *
98638333 ATGCTGAAATCTTCAATCTGCTTCGC-AGAGA-GCAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* *
98638377 ATCTACTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
98638421 ATCT
1 ATCT
98638425 TGTTTCTTTG
Statistics
Matches: 104, Mismatches: 22, Indels: 16
0.73 0.15 0.11
Matches are distributed among these distances:
42 14 0.13
43 32 0.31
44 58 0.56
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:98639319 original size:21 final size:21
Alignment explanation
Indices: 98639295--98639359 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
98639285 TCACCTTGGC
*
98639295 CTCTCCATTTTTTTCTTTTTT
1 CTCTTCATTTTTTTCTTTTTT
*
98639316 CTCTTTATTTTTTTCTCTTTTT
1 CTCTTCATTTTTTTCT-TTTTT
* *
98639338 CTTTTCTTTTTTTCTCTTTTTT
1 CTCTTCATTTTTT-TCTTTTTT
98639360 TTTGAAATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.38
22 20 0.54
23 3 0.08
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (21 bp):
CTCTTCATTTTTTTCTTTTTT
Found at i:98639328 original size:13 final size:12
Alignment explanation
Indices: 98639310--98639362 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
98639300 CATTTTTTTC
98639310 TTTTTTCTCTTTAT
1 TTTTTTCTC-TT-T
98639324 TTTTTTCTCTTT
1 TTTTTTCTCTTT
*
98639336 TTCTTT-TC--T
1 TTTTTTCTCTTT
98639345 TTTTTTCTCTTT
1 TTTTTTCTCTTT
98639357 TTTTTT
1 TTTTTT
98639363 GAAATAGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 6 0.18
10 2 0.06
11 2 0.06
12 13 0.38
13 2 0.06
14 9 0.26
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:98639328 original size:20 final size:21
Alignment explanation
Indices: 98639301--98639362 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
98639291 TGGCCTCTCC
98639301 ATTTTTTTCT-TTTTTCTCTTT
1 ATTTTTTTCTCTTTTTCT-TTT
98639322 ATTTTTTTCTCTTTTTCTTTT
1 ATTTTTTTCTCTTTTTCTTTT
*
98639343 CTTTTTTTCTCTTTTT-TTTT
1 ATTTTTTTCTCTTTTTCTTTT
98639363 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
20 4 0.10
21 28 0.72
22 7 0.18
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (21 bp):
ATTTTTTTCTCTTTTTCTTTT
Found at i:98639329 original size:14 final size:13
Alignment explanation
Indices: 98639305--98639350 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
98639295 CTCTCCATTT
98639305 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
98639319 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
98639333 TTTTTCTTTTCT-
1 TTTTTTTTTTCTC
98639345 TTTTTT
1 TTTTTT
98639351 CTCTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 5 0.17
13 8 0.28
14 15 0.52
15 1 0.03
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:98639362 original size:14 final size:14
Alignment explanation
Indices: 98639304--98639350 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
98639294 CCTCTCCATT
98639304 TTTTTCTTTTTTCTC
1 TTTTT-TTTTTTCTC
*
98639319 TTTATTTTTTTCTC
1 TTTTTTTTTTTCTC
*
98639333 -TTTTTCTTTTCT-
1 TTTTTTTTTTTCTC
98639345 TTTTTT
1 TTTTTT
98639351 CTCTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 15 0.54
14 9 0.32
15 4 0.14
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTCTC
Found at i:98645308 original size:21 final size:21
Alignment explanation
Indices: 98645274--98645326 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
98645264 TTAAAATATG
*
98645274 TATAATATAAATAA-ATAAATA
1 TATAATATATATAAGATAAA-A
* *
98645295 TATAAGATATATAAGTTAAAA
1 TATAATATATATAAGATAAAA
98645316 TATAATATATA
1 TATAATATATA
98645327 ATAATAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
TATAATATATATAAGATAAAA
Found at i:98645369 original size:12 final size:13
Alignment explanation
Indices: 98645350--98645380 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
98645340 AATTTTGAAA
98645350 ATATAAATAATAT
1 ATATAAATAATAT
98645363 A-ATAAATAATAT
1 ATATAAATAATAT
98645375 ATATAA
1 ATATAA
98645381 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:98645378 original size:16 final size:15
Alignment explanation
Indices: 98645355--98645385 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
98645345 TGAAAATATA
98645355 AATAATATAATAAAT
1 AATAATATAATAAAT
98645370 AATATATATAATAAAT
1 AATA-ATATAATAAAT
98645386 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:98645738 original size:17 final size:18
Alignment explanation
Indices: 98645685--98645782 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
98645675 AATCATATCT
*
98645685 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
98645704 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
98645722 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
98645739 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
98645757 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
98645774 TCTAAGATT
1 TCTAAGATT
98645783 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:98645743 original size:35 final size:35
Alignment explanation
Indices: 98645685--98645791 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
98645675 AATCATATCT
98645685 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
98645722 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
98645757 TCTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
98645792 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:98649812 original size:43 final size:43
Alignment explanation
Indices: 98649751--98649898 Score: 224
Period size: 43 Copynumber: 3.4 Consensus size: 43
98649741 TTTAAATTTT
* *
98649751 ATGACCTTTAGCGGCGTTTTTGTGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
* * *
98649794 ATGACTTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGTTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
* * *
98649837 ATGACATTTAACGACGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
98649880 ATGACCTTTAGCGGCGTTT
1 ATGACCTTTAGCGGCGTTT
98649899 TTTTAAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
Found at i:98656959 original size:26 final size:26
Alignment explanation
Indices: 98656922--98657031 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
98656912 TGATACAAAT
98656922 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98656948 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98656974 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
98657000 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
98657026 TGATAA
1 TGATAA
98657032 GAATATCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:98656979 original size:52 final size:52
Alignment explanation
Indices: 98656922--98657031 Score: 220
Period size: 52 Copynumber: 2.1 Consensus size: 52
98656912 TGATACAAAT
98656922 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
98656974 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
98657026 TGATAA
1 TGATAA
98657032 GAATATCATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:98658547 original size:26 final size:26
Alignment explanation
Indices: 98658518--98658570 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98658508 TTTACAGTTT
98658518 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
98658544 TACCCTTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
98658570 T
1 T
98658571 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:98659064 original size:137 final size:137
Alignment explanation
Indices: 98658818--98659104 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
98658808 GAGTAGTCTC
* *
98658818 CCCAAATGGGCTTGCATATGTTTACTGATGTTGTATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
98658883 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
98658948 ACTGTTA
131 ACTGTTA
98658955 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
*
98659020 TGTTATCTGAATAAGGGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
98659085 ACTGTTA
131 ACTGTTA
**
98659092 CCTGAATGGGCTT
1 CCCAAATGGGCTT
98659105 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATAGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:98664669 original size:10 final size:10
Alignment explanation
Indices: 98664642--98664680 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
98664632 TTAAATTTTA
*
98664642 AAAGACAAAT
1 AAAGATAAAT
98664652 ACAA-ATAAAT
1 A-AAGATAAAT
98664662 AAAGATAAAT
1 AAAGATAAAT
98664672 AAAGATAAA
1 AAAGATAAA
98664681 AGCTAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:98668483 original size:24 final size:24
Alignment explanation
Indices: 98668339--98668482 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
98668329 GCTTTATCAT
*
98668339 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
98668364 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98668388 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
98668412 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
98668436 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
98668460 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98668483 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
24 101 0.89
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98668576 original size:20 final size:21
Alignment explanation
Indices: 98668532--98668588 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
98668522 TTATGATTAC
* *
98668532 ATCATGTGCATTTCTTA-CAT
1 ATCATGTGCATATCATATCAT
98668552 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
98668573 -TCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
98668589 CCACGTATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 21 0.62
21 3 0.09
ACGTcount: A:0.30, C:0.19, G:0.09, T:0.42
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:98673961 original size:6 final size:6
Alignment explanation
Indices: 98673950--98674022 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
98673940 ACAAGTCTGT
* * *
98673950 AAAATA AAAAT- AAAAT- AAAATA AAAGA-G AAGAT- AAAAGA AAAATGA
1 AAAATA AAAATA AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAAT-A
*
98673996 AAAAGA TAAAATA AAAATA AAAATA AA
1 AAAATA -AAAATA AAAATA AAAATA AA
98674023 TGGACTCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
5 14 0.26
6 29 0.54
7 11 0.20
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:98673964 original size:5 final size:5
Alignment explanation
Indices: 98673949--98674022 Score: 51
Period size: 5 Copynumber: 13.8 Consensus size: 5
98673939 GACAAGTCTG
* * *
98673949 TAAAA TAAAAA TAAAA TAAAA TAAAA GAGAAGA TAAAA GAAAAA TGAAA
1 TAAAA T-AAAA TAAAA TAAAA TAAAA TA-AA-A TAAAA -TAAAA TAAAA
*
98673998 -AAGA TAAAA TAAAAA TAAAAA TAAA
1 TAAAA TAAAA T-AAAA T-AAAA TAAA
98674023 TGGACTCAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
4 2 0.04
5 27 0.49
6 24 0.44
7 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (5 bp):
TAAAA
Found at i:98674003 original size:20 final size:19
Alignment explanation
Indices: 98673978--98674018 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
98673968 AATAAAAGAG
98673978 AAGATAAAAGAAAAATGAAA
1 AAGATAAAAGAAAAAT-AAA
*
98673998 AAGATAAAATAAAAATAAA
1 AAGATAAAAGAAAAATAAA
98674017 AA
1 AA
98674019 TAAATGGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AAGATAAAAGAAAAATAAA
Found at i:98676590 original size:25 final size:25
Alignment explanation
Indices: 98676561--98676608 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98676551 TTATACCATG
* * *
98676561 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
98676586 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98676609 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:98676677 original size:20 final size:20
Alignment explanation
Indices: 98676652--98676708 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
98676642 TAAATATGGT
98676652 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
98676672 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
98676692 ATGTATGATATGCACAT
1 ATGTATGATATGCACAT
98676709 AAGGTAATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:98676692 original size:11 final size:11
Alignment explanation
Indices: 98676656--98676708 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
98676646 TATGGTATGT
98676656 ATGATATGCAC
1 ATGATATGCAC
* *
98676667 ATGAAATG--T
1 ATGATATGCAC
98676676 ATGATATGCAC
1 ATGATATGCAC
*
98676687 ATGATATG--T
1 ATGATATGCAC
98676696 ATGATATGCAC
1 ATGATATGCAC
98676707 AT
1 AT
98676709 AAGGTAATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:98676791 original size:23 final size:24
Alignment explanation
Indices: 98676761--98676855 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
98676751 GAGGAAGTGA
98676761 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
98676784 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
98676808 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
98676832 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98676856 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:98676829 original size:47 final size:49
Alignment explanation
Indices: 98676762--98676855 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
98676752 AGGAAGTGAA
*
98676762 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
98676809 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
98676856 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:98677098 original size:38 final size:38
Alignment explanation
Indices: 98677047--98677240 Score: 236
Period size: 38 Copynumber: 5.4 Consensus size: 38
98677037 CGTTTACAGT
*
98677047 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
98677085 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
98677116 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
*
98677147 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
* *
98677185 AAAGGCTTCGGCCCAGTATTATGAAATATGACATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
*
98677223 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
98677241 GCATGATTGA
Statistics
Matches: 142, Mismatches: 6, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
31 60 0.42
33 1 0.01
36 1 0.01
38 67 0.47
39 13 0.09
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
Found at i:98677109 original size:31 final size:31
Alignment explanation
Indices: 98677071--98677215 Score: 200
Period size: 31 Copynumber: 4.5 Consensus size: 31
98677061 AGTATTATGA
*
98677071 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGT
98677102 AATATGAAATATGAAAAGGCTTCGGCCCAGT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGT
98677133 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAATATGAAAAGGCTTCGGCCCAG-----T
*
98677169 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAATATGAAAAGGCTTCGGCCCAGT
*
98677202 ATTATGAAATATGA
1 AATATGAAATATGA
98677216 CATACGAAAA
Statistics
Matches: 103, Mismatches: 4, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
31 72 0.70
33 1 0.01
36 1 0.01
38 29 0.28
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGT
Found at i:98677123 original size:69 final size:70
Alignment explanation
Indices: 98677047--98677240 Score: 224
Period size: 69 Copynumber: 2.8 Consensus size: 70
98677037 CGTTTACAGT
*
98677047 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGT-AATATGAAA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGAAAAGGCTTCGGCCCAGTAAATATGAAA
*
98677111 TATGA
66 CATGA
98677116 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGAAAAGGCTTCGGCCCAG-----T-AAAT
98677174 ATGAAACATGA
60 ATGAAACATGA
* * *
98677185 AAAGGCTTCGGCCCAGTATTATGAAATATGACATACGAAAAGGGCTACGGCCCAGT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGAAAA-GGCTTCGGCCCAGT
98677241 GCATGATTGA
Statistics
Matches: 105, Mismatches: 5, Indels: 27
0.77 0.04 0.20
Matches are distributed among these distances:
62 29 0.28
64 1 0.01
67 1 0.01
69 45 0.43
72 1 0.01
74 1 0.01
76 15 0.14
77 12 0.11
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (70 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGAAAAGGCTTCGGCCCAGTAAATATGAAA
CATGA
Found at i:98684972 original size:25 final size:25
Alignment explanation
Indices: 98684943--98684990 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98684933 TTATATCATG
* * *
98684943 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
98684968 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98684991 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:98685059 original size:20 final size:20
Alignment explanation
Indices: 98685034--98685092 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
98685024 TAAATATGGT
98685034 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
98685054 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
98685074 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
98685093 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:98685173 original size:23 final size:24
Alignment explanation
Indices: 98685143--98685237 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
98685133 GAGGAAGTGA
98685143 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
98685166 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
98685190 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
98685214 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98685238 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:98685211 original size:47 final size:49
Alignment explanation
Indices: 98685144--98685237 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
98685134 AGGAAGTGAA
*
98685144 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
98685191 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
98685238 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:98685490 original size:31 final size:31
Alignment explanation
Indices: 98685452--98685597 Score: 195
Period size: 31 Copynumber: 4.5 Consensus size: 31
98685442 CAGTATTATG
*
98685452 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGT
98685483 AATATGAAATATGAAAAGGCTTCGGCCCAGT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGT
98685514 -ATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAATATGAAAAGGCTTCGGCCCAG-----T
*
98685549 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAATATGAAAAGGCTTCGGCCCAGT
*
98685582 ATTATGAAATATGAAA
1 AATATGAAATATGAAA
98685598 TACGAAAAGG
Statistics
Matches: 103, Mismatches: 4, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
30 29 0.28
31 44 0.43
33 1 0.01
35 1 0.01
38 28 0.27
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGT
Found at i:98685504 original size:68 final size:68
Alignment explanation
Indices: 98685429--98685620 Score: 218
Period size: 68 Copynumber: 2.8 Consensus size: 68
98685419 CGTTTACAGT
*
98685429 AAAGGCTTCGGCCCAGTATTATGAATATGAAACATGAAAAGGCTTCGGCCCAGT-AATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAATATGAAA-ATGAAAAGGCTTCGGCCCAGTAAATATGAAAC
98685493 ATGA
65 ATGA
98685497 AAAGGCTTCGGCCCAGTA-TATGAA-AT----ATGAAAAGGCTTCGGCCCAGTATTATGAAATAT
1 AAAGGCTTCGGCCCAGTATTATGAATATGAAAATGAAAAGGCTTCGGCCCAG-----T-AAATAT
98685556 GAAACATGA
60 GAAACATGA
* *
98685565 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AAAGGCTTCGGCCCAGTATTATG-AATATGAAA-ATGAAAA-GGCTTCGGCCCAGT
98685621 GCATGATTGA
Statistics
Matches: 105, Mismatches: 3, Indels: 28
0.77 0.02 0.21
Matches are distributed among these distances:
61 20 0.19
66 3 0.03
67 6 0.06
68 49 0.47
69 4 0.04
70 2 0.02
71 2 0.02
72 1 0.01
76 6 0.06
77 12 0.11
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (68 bp):
AAAGGCTTCGGCCCAGTATTATGAATATGAAAATGAAAAGGCTTCGGCCCAGTAAATATGAAACA
TGA
Found at i:98685565 original size:38 final size:38
Alignment explanation
Indices: 98685514--98685620 Score: 178
Period size: 38 Copynumber: 2.8 Consensus size: 38
98685504 TCGGCCCAGT
98685514 ATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAA
1 ATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAA
*
98685552 ATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAA
1 ATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAA
* *
98685590 ATATGAAATACGAAAAGGGCTACGGCCCAGT
1 ATATGAAATATGAAAA-GGCTTCGGCCCAGT
98685621 GCATGATTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 51 0.80
39 13 0.20
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
ATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAA
Found at i:98691947 original size:10 final size:10
Alignment explanation
Indices: 98691932--98691965 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
98691922 ACTTTGGAAT
98691932 GCCCAAAATA
1 GCCCAAAATA
98691942 GCCCAAAATA
1 GCCCAAAATA
98691952 GCCCAAAATTA
1 GCCCAAAA-TA
98691963 GCC
1 GCC
98691966 TTTTCTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.78
11 5 0.22
ACGTcount: A:0.44, C:0.32, G:0.12, T:0.12
Consensus pattern (10 bp):
GCCCAAAATA
Found at i:98692474 original size:130 final size:128
Alignment explanation
Indices: 98692219--98692475 Score: 295
Period size: 130 Copynumber: 2.0 Consensus size: 128
98692209 TTCACCTTCC
* *
98692219 TATGCTCACCTAAGTATAAAACATGAATTTAAAGGATTAAGAGCATCAAATTCACTAACTCTTAT
1 TATGCTCACCTAAGTATAAAACATGAAATTAAAGGATTAAGAGCATCAAATTCACTAAATCTTAT
* * * * * *
98692284 GATAAATCATCCAAAAATATGCCAAGCATGGGATAAAAATATGTATATATTATGGTTTATCACT
66 AATAAATCATCCAAAAACAT-CCAAGAATGAGATAAAAACATGTATATATTATGGCTTATCACT
* * *
98692348 TATGCTCTCCTAAGTATGGAAACATGAAATTAAAGGATTAGGAGCATCAAATTCACTAAAT-TAT
1 TATGCTCACCTAAGTAT-AAAACATGAAATTAAAGGATTAAGAGCATCAAATTCACTAAATCT-T
* * ** *
98692412 ATAATAAATTATCCGAAAACGCAT-CAAGAATGAGATTGAAACATGT-TACTTTTATGGCTTATC
64 ATAATAAATCATCC-AAAA-ACATCCAAGAATGAGATAAAAACATGTATA-TATTATGGCTTATC
98692475 A
126 A
98692476 AATATCCCCA
Statistics
Matches: 107, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
129 19 0.18
130 82 0.77
131 4 0.04
132 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (128 bp):
TATGCTCACCTAAGTATAAAACATGAAATTAAAGGATTAAGAGCATCAAATTCACTAAATCTTAT
AATAAATCATCCAAAAACATCCAAGAATGAGATAAAAACATGTATATATTATGGCTTATCACT
Found at i:98692549 original size:26 final size:26
Alignment explanation
Indices: 98692513--98692585 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
98692503 GTCTTCAAGC
98692513 AAAATTCTCAAATCACAATTAAAATT
1 AAAATTCTCAAATCACAATTAAAATT
*
98692539 AAAATTCTCAACTCACAATTAAAATT
1 AAAATTCTCAAATCACAATTAAAATT
* * *
98692565 AAACTTTCTCAATTCATAATT
1 AAA-ATTCTCAAATCACAATT
98692586 CTCATCAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 28 0.67
27 14 0.33
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (26 bp):
AAAATTCTCAAATCACAATTAAAATT
Found at i:98693018 original size:19 final size:19
Alignment explanation
Indices: 98692994--98693031 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
98692984 TTGATAATTT
* *
98692994 ACCTAACTAGACAAATAAA
1 ACCTAACTACAAAAATAAA
98693013 ACCTAACTACAAAAATAAA
1 ACCTAACTACAAAAATAAA
98693032 TTAATACTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.21, G:0.03, T:0.16
Consensus pattern (19 bp):
ACCTAACTACAAAAATAAA
Found at i:98694184 original size:6 final size:6
Alignment explanation
Indices: 98694158--98694221 Score: 83
Period size: 6 Copynumber: 10.5 Consensus size: 6
98694148 GAAGTCTAAG
* * * *
98694158 AAAATA CAAATA AACAGA AAAATA AAAATA AAAACTA AGAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAATA AAAATA
98694207 AAAATA AAAATA AAA
1 AAAATA AAAATA AAA
98694222 GAAAACAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
6 44 0.90
7 5 0.10
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:98695891 original size:22 final size:22
Alignment explanation
Indices: 98695858--98695899 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
98695848 ATAAAAAATA
98695858 AATAAAATAAAATA-AAATAACT
1 AATAAAATAAAA-AGAAATAACT
98695880 AATAATAA-AAAAAGAAATAA
1 AATAA-AATAAAAAGAAATAA
98695900 TAAAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.06
22 15 0.83
23 2 0.11
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (22 bp):
AATAAAATAAAAAGAAATAACT
Found at i:98711008 original size:47 final size:47
Alignment explanation
Indices: 98710939--98711030 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
98710929 CATTAAAGCT
98710939 TAGTAAGTCCATATGCAAATAACATGCTACCTAAACAAGTATTTACC
1 TAGTAAGTCCATATGCAAATAACATGCTACCTAAACAAGTATTTACC
*
98710986 TAGTAAGTCCATATGCAAATAACATGCTACTTAAACAAGTATTTA
1 TAGTAAGTCCATATGCAAATAACATGCTACCTAAACAAGTATTTA
98711031 ACATACACAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.29
Consensus pattern (47 bp):
TAGTAAGTCCATATGCAAATAACATGCTACCTAAACAAGTATTTACC
Found at i:98716202 original size:34 final size:33
Alignment explanation
Indices: 98716156--98716229 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
98716146 TATGCATTAT
98716156 TGATACTGTACTG-AATTGGGCTAAGGCCCACAC
1 TGATACTGTACTGTAA-TGGGCTAAGGCCCACAC
* * *
98716189 TGTTACTGCTACTGTAATGGGTTAGGGCCCACAC
1 TGATACTG-TACTGTAATGGGCTAAGGCCCACAC
98716223 TGATACT
1 TGATACT
98716230 ACTGTGGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 7 0.20
34 26 0.74
35 2 0.06
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (33 bp):
TGATACTGTACTGTAATGGGCTAAGGCCCACAC
Found at i:98723710 original size:34 final size:34
Alignment explanation
Indices: 98723656--98723729 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
98723646 TATGCATTAT
* *
98723656 TGATATTG-TACTGAATTGGGCTAAGGCTCACAC
1 TGATACTGCTACTGAATTGGGCTAAGGCCCACAC
*
98723689 TGTTACTGCTACTGTAA-TGGGCTAAGGCCCACAC
1 TGATACTGCTACTG-AATTGGGCTAAGGCCCACAC
98723723 TGATACT
1 TGATACT
98723730 ACTGTGGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 6 0.17
34 27 0.77
35 2 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (34 bp):
TGATACTGCTACTGAATTGGGCTAAGGCCCACAC
Found at i:98723743 original size:34 final size:34
Alignment explanation
Indices: 98723664--98723745 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
98723654 ATTGATATTG
* * *
98723664 TACT-GAATTGGGCTAAGGCTCACACTGTTACTGC
1 TACTGGAA-TGGGCTAAGGCCCACACTGATACTAC
*
98723698 TACTGTAATGGGCTAAGGCCCACACTGATACTAC
1 TACTGGAATGGGCTAAGGCCCACACTGATACTAC
*
98723732 T-GTGGATATGGGCT
1 TACTGGA-ATGGGCT
98723746 TGAGCCCAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 3 0.08
34 35 0.88
35 2 0.05
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (34 bp):
TACTGGAATGGGCTAAGGCCCACACTGATACTAC
Found at i:98724996 original size:10 final size:10
Alignment explanation
Indices: 98724977--98725015 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
98724967 TTAAATTCTA
98724977 AAAGATAAAT
1 AAAGATAAAT
98724987 ACAA-ATAAAT
1 A-AAGATAAAT
98724997 AAAGATAAAT
1 AAAGATAAAT
98725007 AAAGATAAA
1 AAAGATAAA
98725016 AGCTAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Done.