Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 332 of 345
Found at i:99312729 original size:18 final size:17
Alignment explanation
Indices: 99312706--99312739 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
99312696 GCTAAAATTT
99312706 TATTTTAATATTTTTATA
1 TATTTTAAT-TTTTTATA
99312724 TATTTTAATTTTTTAT
1 TATTTTAATTTTTTAT
99312740 TATGCACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTAATTTTTTATA
Found at i:99317233 original size:21 final size:21
Alignment explanation
Indices: 99317207--99317253 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
99317197 CTGAACTACT
99317207 TTCTTCTAATCGATCCAAACA
1 TTCTTCTAATCGATCCAAACA
* *
99317228 TTCTTCTAATTGATCCGAACA
1 TTCTTCTAATCGATCCAAACA
99317249 TTCTT
1 TTCTT
99317254 GAAATTCTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.40
Consensus pattern (21 bp):
TTCTTCTAATCGATCCAAACA
Found at i:99317259 original size:21 final size:21
Alignment explanation
Indices: 99317207--99317259 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
99317197 CTGAACTACT
* *
99317207 TTCTTCTAATCGATCCAAACA
1 TTCTTCAAATTGATCCAAACA
* *
99317228 TTCTTCTAATTGATCCGAACA
1 TTCTTCAAATTGATCCAAACA
*
99317249 TTCTTGAAATT
1 TTCTTCAAATT
99317260 CTCCAGCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (21 bp):
TTCTTCAAATTGATCCAAACA
Found at i:99325088 original size:9 final size:9
Alignment explanation
Indices: 99325071--99325104 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
99325061 GCCATATACT
99325071 GTTTCTATA
1 GTTTCTATA
*
99325080 GTTTTTATA
1 GTTTCTATA
*
99325089 ATTTCTATA
1 GTTTCTATA
99325098 GTTTCTA
1 GTTTCTA
99325105 ATAGGCATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59
Consensus pattern (9 bp):
GTTTCTATA
Found at i:99327907 original size:25 final size:25
Alignment explanation
Indices: 99327862--99327935 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 25
99327852 TACTAATCTA
* * **
99327862 AAAAATATATAATAAAT-AAAATTT
1 AAAAATATACAAAAAATAAAAATAG
99327886 AAAAATATACAAAAAATAAAAATAG
1 AAAAATATACAAAAAATAAAAATAG
* *
99327911 AGAAATTTACAAAAAATGAAAAATA
1 AAAAATATACAAAAAAT-AAAAATA
99327936 AAACAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 15 0.36
25 20 0.48
26 7 0.17
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.23
Consensus pattern (25 bp):
AAAAATATACAAAAAATAAAAATAG
Found at i:99328257 original size:34 final size:34
Alignment explanation
Indices: 99328180--99328258 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
99328170 TTAACTAATT
* * * *
99328180 TTTATTTTTATTTTCAATTTATATACATTATTTT
1 TTTAATTTTATTTTCAATTCATATACATTATGTA
*
99328214 TTTAATTTTATTTTCAATTCATATATA-TATGTA
1 TTTAATTTTATTTTCAATTCATATACATTATGTA
99328247 TTTAAGTTTTAT
1 TTTAA-TTTTAT
99328259 AATTTATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 9 0.23
34 30 0.77
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (34 bp):
TTTAATTTTATTTTCAATTCATATACATTATGTA
Found at i:99336872 original size:20 final size:20
Alignment explanation
Indices: 99336849--99336909 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
99336839 ACTTTTAATT
99336849 TTTTTAATAATATTTTGTAA
1 TTTTTAATAATATTTTGTAA
* *
99336869 TTTTTAAT-ATA-TTTATAG
1 TTTTTAATAATATTTTGTAA
*
99336887 TTTTTAAATAGT-TTTTGTAA
1 TTTTT-AATAATATTTTGTAA
99336907 TTT
1 TTT
99336910 GTTATATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.30
19 6 0.18
20 17 0.52
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTTTAATAATATTTTGTAA
Found at i:99336878 original size:17 final size:17
Alignment explanation
Indices: 99336856--99336919 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 17
99336846 ATTTTTTTAA
99336856 TAATATTTTGTAATTTT
1 TAATATTTTGTAATTTT
* *
99336873 TAATATATTTATAGTTTT
1 TAATAT-TTTGTAATTTT
99336891 TAAATAGTTTTTGTAATTTGT
1 T-AATA--TTTTGTAATTT-T
99336912 T-ATATTTT
1 TAATATTTT
99336920 TCATAATTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
17 10 0.26
18 10 0.26
19 7 0.18
20 8 0.21
21 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
TAATATTTTGTAATTTT
Found at i:99336892 original size:18 final size:20
Alignment explanation
Indices: 99336818--99336893 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
99336808 TGGGTTTTTT
*
99336818 TATTATTATAATTTTTCAT-A
1 TATT-TTATAATTTTTAATAA
*
99336838 TACTTTTA-ATTTTTTTAATAA
1 TA-TTTTATA-ATTTTTAATAA
*
99336859 TATTTTGTAATTTTTAAT-A
1 TATTTTATAATTTTTAATAA
*
99336878 TA-TTTATAGTTTTTAA
1 TATTTTATAATTTTTAA
99336894 ATAGTTTTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 12 0.26
19 4 0.09
20 24 0.52
21 6 0.13
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TATTTTATAATTTTTAATAA
Found at i:99336903 original size:38 final size:40
Alignment explanation
Indices: 99336826--99336909 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 40
99336816 TTTATTATTA
* * *
99336826 TAATTTTTCATATACTTTTAATTTTTTTAATAATATTTTG
1 TAATTTTTAATATACTTTTAAGTTTTTAAATAATATTTTG
*
99336866 TAATTTTTAATATA--TTTATAGTTTTTAAATAGT-TTTTG
1 TAATTTTTAATATACTTTTA-AGTTTTTAAATAATATTTTG
99336904 TAATTT
1 TAATTT
99336910 GTTATATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 15 0.38
39 11 0.28
40 13 0.33
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (40 bp):
TAATTTTTAATATACTTTTAAGTTTTTAAATAATATTTTG
Found at i:99345088 original size:15 final size:15
Alignment explanation
Indices: 99345068--99345099 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
99345058 GTAGCTTAGG
99345068 AGTAAGATTTAGATT
1 AGTAAGATTTAGATT
99345083 AGTAAGATTTAGATT
1 AGTAAGATTTAGATT
99345098 AG
1 AG
99345100 GCTTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (15 bp):
AGTAAGATTTAGATT
Found at i:99347292 original size:138 final size:138
Alignment explanation
Indices: 99347112--99347388 Score: 401
Period size: 138 Copynumber: 2.0 Consensus size: 138
99347102 AAAAAAAAGG
* * * *
99347112 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTAACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
* * *
99347177 TAGAACTATTTATATTAATAAATTCAGTAAGATATATACAATTAATTTTTTACATGAATCAACTT
66 TAGAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
99347242 CATATATT
131 CATATATT
**
99347250 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
* * * ** * **
99347315 TATAATTGTTTATATTAATAAATTTGGTAAAATATATATAATTAATATTTTGTATGAATCAAATT
66 TAGAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
99347380 CATATATT
131 CATATATT
99347388 A
1 A
99347389 GTTTTATCTA
Statistics
Matches: 122, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 122 1.00
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATCAATTTCCATATATTTTATATTTTAACCAAAATTAATTAA
TAGAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTACATGAATCAAATT
CATATATT
Found at i:99350118 original size:6 final size:6
Alignment explanation
Indices: 99350107--99350159 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
99350097 AGTCCACTTA
* * *
99350107 TTTTAT TTTTATT TTTTAT TTTTAT TTTTAA TTTTAT CTTT-C TTTTAT
1 TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
99350155 TTTTA
1 TTTTA
99350160 AAGACTTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 3 0.08
6 30 0.77
7 6 0.15
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:99350125 original size:13 final size:13
Alignment explanation
Indices: 99350107--99350141 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
99350097 AGTCCACTTA
99350107 TTTTATTTTTATT
1 TTTTATTTTTATT
99350120 TTTTATTTTTATT
1 TTTTATTTTTATT
*
99350133 TTTAATTTT
1 TTTTATTTT
99350142 ATCTTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:99352370 original size:15 final size:14
Alignment explanation
Indices: 99352343--99352384 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
99352333 ATCTTGTTAC
*
99352343 TATATTCTGAATTA
1 TATATTCTTAATTA
99352357 TATATTTCTTAATTA
1 TATA-TTCTTAATTA
*
99352372 TGTATTCTTAATT
1 TATATTCTTAATT
99352385 CTTGCTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (14 bp):
TATATTCTTAATTA
Found at i:99361928 original size:2 final size:2
Alignment explanation
Indices: 99361921--99361953 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
99361911 TCATGACATG
99361921 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
99361954 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99363224 original size:22 final size:22
Alignment explanation
Indices: 99363199--99363244 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
99363189 CCAAATTGTG
*
99363199 GAAAT-GTTAGAATGGATGTTTA
1 GAAATGGTTA-AATGAATGTTTA
99363221 GAAATGGTTAAATGAATGTTTA
1 GAAATGGTTAAATGAATGTTTA
99363243 GA
1 GA
99363245 CATGCTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (22 bp):
GAAATGGTTAAATGAATGTTTA
Found at i:99364791 original size:3 final size:3
Alignment explanation
Indices: 99364783--99364822 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
99364773 ATTTATGTTC
99364783 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
99364823 GTTGTTGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:99364827 original size:3 final size:3
Alignment explanation
Indices: 99364821--99364870 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
99364811 ATTATTATTA
99364821 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
99364869 TT
1 TT
99364871 ATTAAAGTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:99376288 original size:79 final size:80
Alignment explanation
Indices: 99376205--99376365 Score: 306
Period size: 79 Copynumber: 2.0 Consensus size: 80
99376195 TTATTCGAGT
99376205 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAAT-AAAAAATATTTTA
1 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
99376269 AATTTAACATTTCCA
66 AATTTAACATTTCCA
*
99376284 ATTATAATCTAAATTTGAATTAAATATCATTATTTTTCAAATATCTGAAATAAAAAAATATTTTA
1 ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
99376349 AATTTAACATTTCCA
66 AATTTAACATTTCCA
99376364 AT
1 AT
99376366 CATATGTTGA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 50 0.62
80 30 0.38
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (80 bp):
ATTATAATCTAAATTTGAATTAAATATCATTATTTGTCAAATATCTGAAATAAAAAAATATTTTA
AATTTAACATTTCCA
Found at i:99377049 original size:20 final size:20
Alignment explanation
Indices: 99377012--99377050 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
99377002 TTTCAATATC
*
99377012 AAACACATTCATTTCAAGTT
1 AAACACATTAATTTCAAGTT
99377032 AAACA-ATTAATTTCCAAGT
1 AAACACATTAATTT-CAAGT
99377051 CTTAATTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (20 bp):
AAACACATTAATTTCAAGTT
Found at i:99379478 original size:19 final size:20
Alignment explanation
Indices: 99379442--99379485 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
99379432 TATATATACT
* *
99379442 TTAATTAAATCTTTAATTAC
1 TTAATTAAATCCTTAATTAA
99379462 TTAATTAAA-CCTTAATTAA
1 TTAATTAAATCCTTAATTAA
99379481 TTAAT
1 TTAAT
99379486 CTTACACCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAATTAAATCCTTAATTAA
Found at i:99380500 original size:113 final size:115
Alignment explanation
Indices: 99380315--99380573 Score: 321
Period size: 113 Copynumber: 2.3 Consensus size: 115
99380305 AAAAAAAAAA
* * * * *
99380315 TTTGGTGTTGGCTTTCTAAT-GCAGGTACCACTCTAATAAAAAAAAATCAAAAATTTTTGGGTGC
1 TTTGGTGCTGGCTTTCTAATGGCCGGCACCACTCTAAGAAAAAAAAATCAAAAATTTTTGGGTAC
* * **
99380379 TGGTCTTCTAATAGCC-GACACCAGTACAAAAAATATTA-G-AATTTTTTT
66 TGGTCTTCTAATAGCCAG-CACCAGTAAAAAAAATATCAGGAAAACTTTTT
* * * * *
99380427 TTTGGTGCTGGCTTTCTAATGGCCGGCACCACTGTAGGAAAAAAAATTCAAAATTTTTTGGGTAT
1 TTTGGTGCTGGCTTTCTAATGGCCGGCACCACTCTAAGAAAAAAAAATCAAAAATTTTTGGGTAC
*
99380492 TGGTCTTCTAATGGCCAGCACCAGTAAAAAAAATATCAGGGAAAACTTTTT
66 TGGTCTTCTAATAGCCAGCACCAGTAAAAAAAATATCA-GGAAAACTTTTT
99380543 TTTGGTGCTGGCCTTT-TAATGGCCGGCACCA
1 TTTGGTGCTGG-CTTTCTAATGGCCGGCACCA
99380574 GAACAAAAAT
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
112 19 0.15
113 68 0.54
114 1 0.01
115 1 0.01
116 33 0.26
117 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (115 bp):
TTTGGTGCTGGCTTTCTAATGGCCGGCACCACTCTAAGAAAAAAAAATCAAAAATTTTTGGGTAC
TGGTCTTCTAATAGCCAGCACCAGTAAAAAAAATATCAGGAAAACTTTTT
Found at i:99380589 original size:58 final size:59
Alignment explanation
Indices: 99380368--99380744 Score: 206
Period size: 58 Copynumber: 6.6 Consensus size: 59
99380358 AAATCAAAAA
* * * * * * * *
99380368 TTTTTGGGTGCTGGTCTTCTAATAGCCGACACCAGTACAAAAAATATTA-G-AAT-TTT
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCAGTAAAAAAAATATCAGGAAATACTT
* *
99380424 TTTTTTGGTGCTGGCTTTCTAATGGCCGGCACCACTGTAGGAAAAAAA-ATTC---AAA-A--T
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCA--GTA--AAAAAAATA-TCAGGAAATACTT
* ** * * *
99380481 TTTTTGGGTATTGGTCTTCTAATGGCCAGCACCAGTAAAAAAAATATCAGGGAAA-ACTT
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCAGTAAAAAAAATATCA-GGAAATACTT
* * * *
99380540 TTTTTTGGTGCTGGCCTTTTAATGGCCGGCACCAG-AACAAAAATATCAGGAAATATTT
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCAGTAAAAAAAATATCAGGAAATACTT
* *
99380598 TTTTTTGGTGCTAGCCTTCTAATGGCTGGCACCACTGTAGTAAAAAAAAATTC---AAA-A--T
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCA--GTA--AAAAAAATA-TCAGGAAATACTT
* * * * * * *
99380656 TTTCTGGGTGTTGGTCTTCTAATGGTCGGCACCAGT-ACAAAAATATCAGG-AAT--TT
1 TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCAGTAAAAAAAATATCAGGAAATACTT
* *
99380711 TTTTTTTGTGCT-GTCCTTCTAATGGCCGGTACCA
1 TTTTTTGGTGCTAG-CCTTCTAATGGCCGGCACCA
99380745 AACCTTATAT
Statistics
Matches: 252, Mismatches: 42, Indels: 55
0.72 0.12 0.16
Matches are distributed among these distances:
52 2 0.01
53 16 0.06
54 4 0.02
55 29 0.12
56 31 0.12
57 38 0.15
58 77 0.31
59 33 0.13
60 9 0.04
61 4 0.02
63 7 0.03
64 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (59 bp):
TTTTTTGGTGCTAGCCTTCTAATGGCCGGCACCAGTAAAAAAAATATCAGGAAATACTT
Found at i:99380887 original size:29 final size:29
Alignment explanation
Indices: 99380855--99380941 Score: 122
Period size: 28 Copynumber: 3.0 Consensus size: 29
99380845 TCATCAAATG
* * *
99380855 AGTTTTTTTTTTAGTGGGTTGTATAAGTA
1 AGTTTTTTTTGTAGTGGATTGTATAAGGA
*
99380884 AG-TTTTTTTGTAGTGGATTGTATGAGGA
1 AGTTTTTTTTGTAGTGGATTGTATAAGGA
99380912 AGTTTTTTTTGTAGTGGATTGTATATAGGA
1 AGTTTTTTTTGTAGTGGATTGTATA-AGGA
99380942 GTTATTTGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
28 24 0.47
29 23 0.45
30 4 0.08
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.51
Consensus pattern (29 bp):
AGTTTTTTTTGTAGTGGATTGTATAAGGA
Found at i:99380944 original size:29 final size:28
Alignment explanation
Indices: 99380854--99380944 Score: 112
Period size: 29 Copynumber: 3.2 Consensus size: 28
99380844 ATCATCAAAT
* *
99380854 GAGTTTTTTTTTTAGTGGGTTGTATAAG
1 GAGTTTTTTTTGTAGTGGATTGTATAAG
* *
99380882 TAAG-TTTTTTTGTAGTGGATTGTATGAG
1 -GAGTTTTTTTTGTAGTGGATTGTATAAG
99380910 GAAGTTTTTTTTGTAGTGGATTGTATATAG
1 G-AGTTTTTTTTGTAGTGGATTGTATA-AG
99380940 GAGTT
1 GAGTT
99380945 ATTTGTGGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
28 23 0.43
29 27 0.51
30 3 0.06
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.51
Consensus pattern (28 bp):
GAGTTTTTTTTGTAGTGGATTGTATAAG
Found at i:99383774 original size:20 final size:20
Alignment explanation
Indices: 99383749--99383789 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
99383739 GGTCACACAT
99383749 GCTCGTGTGGCTTGGGACAC
1 GCTCGTGTGGCTTGGGACAC
99383769 GCTCGTGTGGCTTGGGACAC
1 GCTCGTGTGGCTTGGGACAC
99383789 G
1 G
99383790 ATTGTGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.24, G:0.41, T:0.24
Consensus pattern (20 bp):
GCTCGTGTGGCTTGGGACAC
Found at i:99383796 original size:20 final size:20
Alignment explanation
Indices: 99383751--99383796 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
99383741 TCACACATGC
*
99383751 TCGTGTGGCTTGGGACACGC
1 TCGTGTGGCTTGGGACACGA
99383771 TCGTGTGGCTTGGGACACGA
1 TCGTGTGGCTTGGGACACGA
*
99383791 TTGTGT
1 TCGTGT
99383797 CCTCAGCCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.20, G:0.39, T:0.30
Consensus pattern (20 bp):
TCGTGTGGCTTGGGACACGA
Found at i:99389316 original size:5 final size:5
Alignment explanation
Indices: 99389308--99389337 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
99389298 AATTTTTTCC
99389308 AATTT AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT
99389338 CTATTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:99389627 original size:5 final size:5
Alignment explanation
Indices: 99389619--99389671 Score: 70
Period size: 5 Copynumber: 10.0 Consensus size: 5
99389609 CTTTCCCTCC
*
99389619 AATTT AATTT AATTT CAATTT TATTT CCAATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT -AATTT AATTT --AATTT AATTT AATTT AATTT
99389667 AATTT
1 AATTT
99389672 CTATTTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 34 0.79
6 5 0.12
7 4 0.09
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:99389648 original size:28 final size:27
Alignment explanation
Indices: 99389616--99389672 Score: 96
Period size: 28 Copynumber: 2.1 Consensus size: 27
99389606 TTTCTTTCCC
*
99389616 TCCAATTTAATTTAATTTCAATTTTATT
1 TCCAATTTAATTTAATTT-AATTTAATT
99389644 TCCAATTTAATTTAATTTAATTTAATT
1 TCCAATTTAATTTAATTTAATTTAATT
99389671 TC
1 TC
99389673 TATTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 10 0.36
28 18 0.64
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (27 bp):
TCCAATTTAATTTAATTTAATTTAATT
Found at i:99389654 original size:23 final size:22
Alignment explanation
Indices: 99389624--99389666 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
99389614 CCTCCAATTT
*
99389624 AATTTAATTTCAATTTTATTTCC
1 AATTTAATTT-AATTTAATTTCC
99389647 AATTTAATTTAATTTAATTT
1 AATTTAATTTAATTTAATTT
99389667 AATTTCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTTAATTTAATTTAATTTCC
Found at i:99389661 original size:38 final size:38
Alignment explanation
Indices: 99389619--99389696 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 38
99389609 CTTTCCCTCC
99389619 AATTTAATTTAATTTC-AATTTTATTTCCAATTTAATTT
1 AATTTAATTTAATTTCTAATTTTATTTCC-ATTTAATTT
* * *
99389657 AATTTAATTTAATTTCTATTTTTATTTGCATTTCATTT
1 AATTTAATTTAATTTCTAATTTTATTTCCATTTAATTT
99389695 AA
1 AA
99389697 ATCAAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 26 0.72
39 10 0.28
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (38 bp):
AATTTAATTTAATTTCTAATTTTATTTCCATTTAATTT
Found at i:99389841 original size:15 final size:15
Alignment explanation
Indices: 99389823--99389893 Score: 62
Period size: 15 Copynumber: 4.8 Consensus size: 15
99389813 GTTTATATAT
99389823 ATTTATTTCATTTTA
1 ATTTATTTCATTTTA
99389838 ATTTATTTCA-TTTA
1 ATTTATTTCATTTTA
*
99389852 A--TATTTCCA-TTAA
1 ATTTATTT-CATTTTA
99389865 ATTT-TTTCATTTTA
1 ATTTATTTCATTTTA
99389879 TATTTTATTTTCATT
1 -A-TTTA-TTTCATT
99389894 AAAATTATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
12 5 0.11
13 8 0.17
14 11 0.24
15 12 0.26
16 3 0.07
18 7 0.15
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTATTTCATTTTA
Found at i:99390081 original size:5 final size:5
Alignment explanation
Indices: 99390073--99390135 Score: 90
Period size: 5 Copynumber: 12.0 Consensus size: 5
99390063 CTTTCCCTCC
*
99390073 AATTT AATTT AATTT CAATTT CATTTTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT -AATTT -A-ATTT AATTT AATTT AATTT AATTT
99390121 AATTT AATTT AATTT
1 AATTT AATTT AATTT
99390136 CTATTTCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
5 43 0.80
6 8 0.15
7 3 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:99390159 original size:48 final size:48
Alignment explanation
Indices: 99390073--99390165 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
99390063 CTTTCCCTCC
* *
99390073 AATTTAATTTAATTTCAATTTCATTTTTAATTTAATTTAATTTAATTT
1 AATTTAATTTAATTTCAATTTCATTTTGAATTTAATTTAAATTAATTT
* * *
99390121 AATTTAATTTAATTTCTATTTC-TATTTGCATTTCATTTAAATTAA
1 AATTTAATTTAATTTCAATTTCAT-TTTGAATTTAATTTAAATTAA
99390166 ATTTTTTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.03
48 38 0.97
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.58
Consensus pattern (48 bp):
AATTTAATTTAATTTCAATTTCATTTTGAATTTAATTTAAATTAATTT
Found at i:99390179 original size:21 final size:20
Alignment explanation
Indices: 99390155--99390203 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
99390145 TTTGCATTTC
99390155 ATTTAAATTAAATTTTTTGAA
1 ATTTAAATT-AATTTTTTGAA
* *
99390176 ATTTAACATTTATTTTTTGCA
1 ATTTAA-ATTAATTTTTTGAA
99390197 ATTTAAA
1 ATTTAAA
99390204 ATTTATTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTTAAATTAATTTTTTGAA
Found at i:99390207 original size:21 final size:21
Alignment explanation
Indices: 99390166--99390211 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
99390156 TTTAAATTAA
*
99390166 ATTTTTTGAAATTTAACATTT
1 ATTTTTTGAAATTTAAAATTT
*
99390187 ATTTTTTGCAATTTAAAATTT
1 ATTTTTTGAAATTTAAAATTT
99390208 ATTT
1 ATTT
99390212 CCATTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTTGAAATTTAAAATTT
Found at i:99390341 original size:13 final size:13
Alignment explanation
Indices: 99390312--99390377 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
99390302 GTGTTTATAT
99390312 ATTTATTTCATTTTA
1 ATTT-TTTCA-TTTA
99390327 ATTTTTTCATTTA
1 ATTTTTTCATTTA
* * * *
99390340 ATATTTCCAATAA
1 ATTTTTTCATTTA
*
99390353 ATTTTTTTCATTTT
1 A-TTTTTTCATTTA
99390367 ATTTTTT-ATTT
1 ATTTTTTCATTT
99390378 TCATTAAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 4 0.10
13 20 0.49
14 13 0.32
15 4 0.10
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTTTTCATTTA
Found at i:99390377 original size:32 final size:35
Alignment explanation
Indices: 99390341--99390411 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 35
99390331 TTTCATTTAA
*
99390341 TATTTCCAAT-AAATTTT-TTTCA-TTTTATTTTT
1 TATTTCCAATAAAATTTTATTTCATTTTTATTATT
* *
99390373 TATTTTCATTAAAATTTTCATTTCATTTTTATTATT
1 TATTTCCAATAAAATTTT-ATTTCATTTTTATTATT
99390409 TAT
1 TAT
99390412 ATTACATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 8 0.25
33 7 0.22
35 5 0.16
36 12 0.38
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (35 bp):
TATTTCCAATAAAATTTTATTTCATTTTTATTATT
Found at i:99393644 original size:52 final size:53
Alignment explanation
Indices: 99393576--99393731 Score: 199
Period size: 52 Copynumber: 3.0 Consensus size: 53
99393566 ATATATCATA
* * * * *
99393576 CCGATGCCATATCCCAGATATGGTCGTACACGGGAGCACTTATCACTT-TTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGGATCACTTATCACTTGTTCT
* * *
99393628 CCGATGCCAAAGCCCAGCTATGGTTTTATAC-GGATCACTTATCACTTGTTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGGATCACTTATCACTTGTTCT
* *
99393680 CCAATGCCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTTGTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGG-GATCACTTATCACTTGTT
99393732 GCCATGGTCT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 15 0.17
52 56 0.63
53 1 0.01
54 17 0.19
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGGATCACTTATCACTTGTTCT
Found at i:99396676 original size:114 final size:114
Alignment explanation
Indices: 99396515--99396928 Score: 431
Period size: 114 Copynumber: 3.6 Consensus size: 114
99396505 GACTAGCACT
* ** * *
99396515 CAAAAAA-TTT-AAATTTTTTTTTACAAGTGTGGTCCTGGCTATTAGAAGACCAGCACCAATTTT
1 CAAAAAATTTTGAAATTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAATTTT
* *
99396578 TTTTTTTTGGTATTTTTGTATTGGTGCCGGCCATTAGAAGGCCAACACC
66 TTTTTTTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGGCCAACACC
* ** *
99396627 AAAAAAATTTTGAAAAATTTTTTTACTACAGTGGTGTTGGCCATTAGAAGACCAGCACCAAATTT
1 CAAAAAATTTTGAAATTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACC-AATTT
* * * *
99396692 TTTTTTTTTGATATTTTCGTACTGGTGCCGGGCATTAGAAGACCAGCACC
65 TTTTTTTTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGGCCAACACC
* * * * *
99396742 CAAAAAATTTT-AAATTTTTTTTTACTATAGTGGTGCCGGCCATTAGAAGGCCAGCACAAAAAAA
1 CAAAAAATTTTGAAATTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCAC---CAAT
***** * *** *
99396806 AAAAATTTCTTGATATTTTTGTACTGGTGTTTGCCATTAGAA-GACAAGCACC
63 TTTTTTTTTTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGGCCAA-CACC
* * * * *
99396858 CAAAAAATTTTGAACTTTTTTTTTTACTAGAGTGGTGCTAGCCATTAGAAGGCCGGCACCAATTT
1 CAAAAAATTTTGAA-ATTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAATTT
99396923 TTTTTT
65 TTTTTT
99396929 CAAATACTCG
Statistics
Matches: 243, Mismatches: 50, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
112 6 0.02
113 3 0.01
114 79 0.33
115 66 0.27
116 48 0.20
117 2 0.01
118 39 0.16
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (114 bp):
CAAAAAATTTTGAAATTTTTTTTTACTACAGTGGTGCTGGCCATTAGAAGACCAGCACCAATTTT
TTTTTTTTGATATTTTTGTACTGGTGCCGGCCATTAGAAGGCCAACACC
Found at i:99396735 original size:56 final size:56
Alignment explanation
Indices: 99396555--99396741 Score: 162
Period size: 59 Copynumber: 3.3 Consensus size: 56
99396545 GGTCCTGGCT
* * *
99396555 ATTAGAAGACCAGCACC-AATTTTTTTTTTTTGGTATTTTTGTATTGGTGCCGGCC
1 ATTAGAAGACCAGCACCAAATTTTTTTTTTTTGATATTTTCGTACTGGTGCCGGCC
* * **** ***** * **
99396610 ATTAGAAGGCCAACACCAAAAAAATTTTGAAAAATTTTTTTAC-TACAGTGGTGTTGGCC
1 ATTAGAAGACCAGCACCAAATTTTTTTTTTTTGA-TATTTT-CGTAC--TGGTGCCGGCC
*
99396669 ATTAGAAGACCAGCACCAAATTTTTTTTTTTTGATATTTTCGTACTGGTGCCGGGC
1 ATTAGAAGACCAGCACCAAATTTTTTTTTTTTGATATTTTCGTACTGGTGCCGGCC
99396725 ATTAGAAGACCAGCACC
1 ATTAGAAGACCAGCACC
99396742 CAAAAAATTT
Statistics
Matches: 94, Mismatches: 32, Indels: 11
0.69 0.23 0.08
Matches are distributed among these distances:
55 15 0.16
56 31 0.33
57 8 0.09
58 8 0.09
59 32 0.34
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (56 bp):
ATTAGAAGACCAGCACCAAATTTTTTTTTTTTGATATTTTCGTACTGGTGCCGGCC
Found at i:99396790 original size:58 final size:58
Alignment explanation
Indices: 99396599--99396917 Score: 197
Period size: 58 Copynumber: 5.5 Consensus size: 58
99396589 ATTTTTGTAT
* * * ** *
99396599 TGGTGCCGGCCATTAGAAGGCCAACACCAAAAAAATTTTGAAAAATTTTTTTACTACAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTT-AAATTTTTTTTTACTATAG
** *** * * *
99396658 TGGTGTTGGCCATTAGAAGACCAGCA-CC---AAATTTTTTTTTTTTGATATTTTC-GTAC
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTT--T-TTTACTATAG
*
99396714 TGGTGCCGGGCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
* *** * * *
99396772 TGGTGCCGGCCATTAGAAGGCCAGCA--CAAAAAA-AAAAAATTTCTTGATATTT-TTGTAC
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTT-TT--T-TTTACTATAG
*** * * *
99396830 TGGTGTTTGCCATTAGAAGACAAGCACCCAAAAAATTTTGAACTTTTTTTTTTACTAGAG
1 TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTT-AA-ATTTTTTTTTACTATAG
** * *
99396890 TGGTGCTAGCCATTAGAAGGCCGGCACC
1 TGGTGCCGGCCATTAGAAGACCAGCACC
99396918 AATTTTTTTT
Statistics
Matches: 193, Mismatches: 49, Indels: 35
0.70 0.18 0.13
Matches are distributed among these distances:
54 3 0.02
55 13 0.07
56 34 0.18
57 10 0.05
58 53 0.27
59 28 0.15
60 45 0.23
62 4 0.02
63 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (58 bp):
TGGTGCCGGCCATTAGAAGACCAGCACCCAAAAAATTTTAAATTTTTTTTTACTATAG
Found at i:99396849 original size:116 final size:118
Alignment explanation
Indices: 99396699--99396916 Score: 323
Period size: 116 Copynumber: 1.9 Consensus size: 118
99396689 TTTTTTTTTT
* *
99396699 TTGATATTTTCGTACTGGTGCCGGGCATTAGAAGACCAGCACCCAAAAAATTTT-AA-ATTTTTT
1 TTGATATTTTCGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTGAACATTTTTT
* *
99396762 TTTACTATAGTGGTGCCGGCCATTAGAAGGCCAGCACAAAAAAAAAAAATTTC
66 TTTACTAGAGTGGTGCCAGCCATTAGAAGGCCAGCACAAAAAAAAAAAATTTC
* *** *
99396815 TTGATATTTTTGTACTGGTGTTTGCCATTAGAAGACAAGCACCCAAAAAATTTTGAACTTTTTTT
1 TTGATATTTTCGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTGAACATTTTTT
* *
99396880 TTTACTAGAGTGGTGCTAGCCATTAGAAGGCCGGCAC
66 TTTACTAGAGTGGTGCCAGCCATTAGAAGGCCAGCAC
99396917 CAATTTTTTT
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 48 0.54
117 2 0.02
118 39 0.44
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (118 bp):
TTGATATTTTCGTACTGGTGCCGGCCATTAGAAGACAAGCACCCAAAAAATTTTGAACATTTTTT
TTTACTAGAGTGGTGCCAGCCATTAGAAGGCCAGCACAAAAAAAAAAAATTTC
Found at i:99401846 original size:26 final size:26
Alignment explanation
Indices: 99401817--99401872 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
99401807 TGATAAAAAT
99401817 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99401843 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99401869 TGAT
1 TGAT
99401873 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:99403066 original size:8 final size:8
Alignment explanation
Indices: 99403053--99403082 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
99403043 AGATCGGCAC
99403053 AAGCCGAA
1 AAGCCGAA
99403061 AAGCCGAA
1 AAGCCGAA
*
99403069 ATGCCGAA
1 AAGCCGAA
99403077 AAGCCG
1 AAGCCG
99403083 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:99403569 original size:27 final size:27
Alignment explanation
Indices: 99403472--99403576 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
99403462 AGGAAGCGTC
99403472 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
99403499 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
*
99403526 CTGGTGGCTTTGCCACAATATCTGTAT
1 CTGGTGGCTTCGCCACAATATCTGTAT
* *
99403553 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
99403577 GTAGCCTCGC
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.01
26 8 0.12
27 57 0.84
28 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:99411469 original size:29 final size:27
Alignment explanation
Indices: 99411408--99411479 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
99411398 AATGCCTTAT
99411408 TGGTGTGTTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATGATATAC
*
99411435 TGGTGTGTTTGGGAGGCTAT-ATTATAC
1 TGGTGTGTTTGGGAGGATATGA-TATAC
*
99411462 TAGTGTGTTAT-GGAGGAT
1 TGGTGTGTT-TGGGAGGAT
99411480 TTATAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.36, T:0.39
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATGATATAC
Found at i:99417966 original size:10 final size:9
Alignment explanation
Indices: 99417897--99417983 Score: 51
Period size: 8 Copynumber: 10.1 Consensus size: 9
99417887 ATGCATTATA
99417897 TATATATTTT
1 TATA-ATTTT
99417907 T-TAATTTT
1 TATAATTTT
*
99417915 TAATAATATT
1 T-ATAATTTT
*
99417925 T-TAATATT
1 TATAATTTT
*
99417933 T-TAA-TAT
1 TATAATTTT
*
99417940 TA-AAATTT
1 TATAATTTT
*
99417948 AATAATTTT
1 TATAATTTT
*
99417957 TATAAGTTT
1 TATAATTTT
*
99417966 TAT-TTTTT
1 TATAATTTT
99417974 TATAATTTT
1 TATAATTTT
99417983 T
1 T
99417984 TTTGTCACAT
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
7 4 0.07
8 26 0.43
9 22 0.37
10 8 0.13
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (9 bp):
TATAATTTT
Found at i:99417986 original size:15 final size:17
Alignment explanation
Indices: 99417953--99417986 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
99417943 AATTTAATAA
99417953 TTTTTATAAGTTTTATT
1 TTTTTATAAGTTTTATT
99417970 TTTTTATAA-TTTT-TT
1 TTTTTATAAGTTTTATT
99417985 TT
1 TT
99417987 GTCACATGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTATAAGTTTTATT
Found at i:99418585 original size:10 final size:10
Alignment explanation
Indices: 99418566--99418637 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
99418556 TTCATATTTT
*
99418566 AAATTTTAAA
1 AAATTATAAA
99418576 AAATTATAAA
1 AAATTATAAA
* *
99418586 AATTTCAAAAA
1 AAATT-ATAAA
99418597 AAATTA-AAA
1 AAATTATAAA
*
99418606 ATA-TATAAA
1 AAATTATAAA
99418615 GAAAGTT-TAAA
1 -AAA-TTATAAA
*
99418626 AAATTTTAAA
1 AAATTATAAA
99418636 AA
1 AA
99418638 TTTCTAGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
8 2 0.04
9 10 0.20
10 25 0.50
11 12 0.24
12 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AAATTATAAA
Found at i:99421565 original size:15 final size:15
Alignment explanation
Indices: 99421545--99421603 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
99421535 TGATTTTATG
99421545 TATTATATTTTATAT
1 TATTATATTTTATAT
99421560 TATTAT-TTACTTATAT
1 TATTATATT--TTATAT
*
99421576 T-TTATTATATTATAT
1 TATTA-TATTTTATAT
99421591 TACTTCATATTTT
1 TA-TT-ATATTTT
99421604 CATCATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
14 2 0.06
15 16 0.46
16 8 0.23
17 8 0.23
18 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:99421577 original size:23 final size:24
Alignment explanation
Indices: 99421547--99421661 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 24
99421537 ATTTTATGTA
99421547 TTATATTTTA-TATTATTAT-TTAC
1 TTATATTTTATTA-TATTATATTAC
99421570 TTATATTTTATTATATTATATTAC
1 TTATATTTTATTATATTATATTAC
*
99421594 TTCATATTTTCATCATATTA-A-TA-
1 TT-ATATTTT-ATTATATTATATTAC
**
99421617 -TATATTTTAACATA-TATCATTAC
1 TTATATTTTATTATATTAT-ATTAC
*
99421640 TCAT-TATTTATTATATTATATT
1 TTATAT-TTTATTATATTATATT
99421662 TTTATCACAT
Statistics
Matches: 76, Mismatches: 5, Indels: 21
0.75 0.05 0.21
Matches are distributed among these distances:
19 2 0.03
20 5 0.07
21 8 0.11
22 3 0.04
23 17 0.22
24 22 0.29
25 11 0.14
26 8 0.11
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (24 bp):
TTATATTTTATTATATTATATTAC
Found at i:99421583 original size:26 final size:26
Alignment explanation
Indices: 99421554--99421613 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
99421544 GTATTATATT
99421554 TTATATTATTATTTACTT-ATATTTT-A
1 TTATATTA-TA-TTACTTCATATTTTCA
99421580 TTATATTATATTACTTCATATTTTCA
1 TTATATTATATTACTTCATATTTTCA
*
99421606 TCATATTA
1 TTATATTA
99421614 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.19
25 9 0.29
26 16 0.52
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (26 bp):
TTATATTATATTACTTCATATTTTCA
Found at i:99421720 original size:42 final size:41
Alignment explanation
Indices: 99421608--99421729 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 41
99421598 TATTTTCATC
* * *
99421608 ATATTAATATATATTTTAAC-ATATATCA-TTACTCATTA-TT
1 ATATTATTTTATATTTTAACAATATATTATTTA-T-ATTATTT
* *
99421648 -TATTATATTATATTTTTATCACATA-A-TATTTATATATATTT
1 ATATTATTTTATA-TTTTAACA-ATATATTATTTATAT-TATTT
99421689 ATATTATTTTATATTTTAACAATATATTATTTCATATTATT
1 ATATTATTTTATATTTTAACAATATATTATTT-ATATTATT
99421730 ATTATCTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
39 11 0.17
40 13 0.20
41 14 0.22
42 23 0.35
43 4 0.06
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.56
Consensus pattern (41 bp):
ATATTATTTTATATTTTAACAATATATTATTTATATTATTT
Found at i:99421732 original size:16 final size:16
Alignment explanation
Indices: 99421713--99421787 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
99421703 TTTAACAATA
99421713 TATTATTTCATATTAT
1 TATTATTTCATATTAT
* *
99421729 TATTATCTAATA-TA-
1 TATTATTTCATATTAT
* *
99421743 TATTTTTTCATGTATAT
1 TATTATTTCATAT-TAT
*
99421760 TATTA-TTCACATTAT
1 TATTATTTCATATTAT
99421775 TA-T-TTTCATATTA
1 TATTATTTCATATTA
99421788 AATTGATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 17 0.38
17 4 0.09
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:99421746 original size:30 final size:29
Alignment explanation
Indices: 99421700--99421787 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
99421690 TATTATTTTA
99421700 TATT-TTAACAATATATTATTTCATATTAT
1 TATTATTAAC-ATATATTATTTCATATTAT
* * *
99421729 TATTATCTAATATATATTTTTTCATGTATAT
1 TATTAT-TAACATATATTATTTCATAT-TAT
*
99421760 TATTATTCACAT-TATTATTTTCATATTA
1 TATTATTAACATATATTA-TTTCATATTA
99421788 AATTGATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 10 0.21
30 26 0.54
31 12 0.25
ACGTcount: A:0.34, C:0.08, G:0.01, T:0.57
Consensus pattern (29 bp):
TATTATTAACATATATTATTTCATATTAT
Found at i:99421935 original size:21 final size:22
Alignment explanation
Indices: 99421901--99421944 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
99421891 TATTTCAAAA
*
99421901 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
99421922 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
99421944 T
1 T
99421945 ATTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:99422662 original size:25 final size:25
Alignment explanation
Indices: 99422603--99422685 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 25
99422593 TGATACAAAT
* *
99422603 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-TA
99422629 TGATAATGGGTTAGGTAAATGTTTA
1 TGATAATGGGTTAGGTAAATGTTTA
99422654 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTT-A
99422680 TGATAA
1 TGATAA
99422686 GAATTTCATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 25 0.46
26 29 0.54
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTTA
Found at i:99424189 original size:25 final size:26
Alignment explanation
Indices: 99424161--99424212 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
99424151 TTTACAGTTT
99424161 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
99424186 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
99424212 T
1 T
99424213 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:99428395 original size:26 final size:26
Alignment explanation
Indices: 99428358--99428441 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
99428348 TGATACAAAT
* *
99428358 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99428384 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99428410 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
99428436 TGATAA
1 TGATAA
99428442 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:99429950 original size:25 final size:26
Alignment explanation
Indices: 99429922--99429973 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
99429912 TTTACAGTTT
99429922 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
99429947 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
99429973 T
1 T
99429974 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:99430687 original size:17 final size:17
Alignment explanation
Indices: 99430665--99430700 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
99430655 CTTATTTTAA
99430665 CTGTTGAAATTGGATAG
1 CTGTTGAAATTGGATAG
99430682 CTGTTGAAATTGGATAG
1 CTGTTGAAATTGGATAG
99430699 CT
1 CT
99430701 TTAGGGCGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (17 bp):
CTGTTGAAATTGGATAG
Found at i:99434437 original size:20 final size:20
Alignment explanation
Indices: 99434412--99434455 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
99434402 GTTCGCGGAG
99434412 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
99434432 TGTGCTCTCTGAAATGGAAA
1 TGTGCTCTCTGAAATGGAAA
99434452 TGTG
1 TGTG
99434456 AGCACATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (20 bp):
TGTGCTCTCTGAAATGGAAA
Found at i:99435013 original size:23 final size:23
Alignment explanation
Indices: 99434987--99435031 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
99434977 TGGGTATGTG
*
99434987 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
99435010 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
99435032 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:99437278 original size:26 final size:25
Alignment explanation
Indices: 99437227--99437279 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
99437217 AAAGGTTATG
*
99437227 TTTTTTTTTTCAATGATAGTAGGTT
1 TTTTTTTTTTCAATGATAGTAAGTT
* * *
99437252 TTTTTTTTTTATAATTATATTAAGTT
1 TTTTTTTTTT-CAATGATAGTAAGTT
99437278 TT
1 TT
99437280 GATTAAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (25 bp):
TTTTTTTTTTCAATGATAGTAAGTT
Found at i:99447727 original size:4 final size:5
Alignment explanation
Indices: 99447716--99447745 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
99447706 AATATAATAT
99447716 TAAAA T-AAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
99447746 TAATTGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:99449780 original size:16 final size:15
Alignment explanation
Indices: 99449739--99449780 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
99449729 TAGGTCAAAA
*
99449739 TATAAATTT-ACTTT
1 TATAAATTTAAATTT
*
99449753 TATTAATTTAAATTT
1 TATAAATTTAAATTT
99449768 TATAAACTTTAAA
1 TATAAA-TTTAAA
99449781 GAGCCTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 8 0.35
15 9 0.39
16 6 0.26
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (15 bp):
TATAAATTTAAATTT
Found at i:99450187 original size:26 final size:26
Alignment explanation
Indices: 99450157--99450215 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
99450147 TTAATCCTAT
**
99450157 TCAACCGATTTGTATCGCCTCACGGA
1 TCAACCGATTTGTATCGCCTCACAAA
* * *
99450183 TCAACTAGTTTTGTATCGGCTCACAAA
1 TCAAC-CGATTTGTATCGCCTCACAAA
99450210 TCAACC
1 TCAACC
99450216 AGTCTAATGC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (26 bp):
TCAACCGATTTGTATCGCCTCACAAA
Found at i:99451753 original size:27 final size:25
Alignment explanation
Indices: 99451682--99451824 Score: 114
Period size: 27 Copynumber: 5.7 Consensus size: 25
99451672 AAGTGTATAC
*
99451682 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAT
* ** *
99451707 ATGGCGTTAAAAATACATACATAAT
1 ATAGTATTAAAAATATATACATAAT
*
99451732 ATAGTTATTAAAAAATATATACATAAA
1 ATAG-TATT-AAAAATATATACATAAT
* *
99451759 ATAATATGTAAAAA-A-AT--GTAAT
1 ATAGTAT-TAAAAATATATACATAAT
* *
99451781 ATAGTATTAGAAATATACACAATATAT
1 ATAGTATTAAAAATATATAC-ATA-AT
*
99451808 ATGGTATTAAAAATATA
1 ATAGTATTAAAAATATA
99451825 GTATTAAAAA
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
21 5 0.06
22 10 0.11
23 1 0.01
24 2 0.02
25 24 0.27
26 12 0.13
27 36 0.40
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAT
Found at i:99452374 original size:6 final size:6
Alignment explanation
Indices: 99452363--99452452 Score: 50
Period size: 6 Copynumber: 15.5 Consensus size: 6
99452353 GTTAAGTAAA
** *
99452363 AATAAT AATAAT GCTAAT AAATAAT AA-ATAT AATAAT AATAGT AATAA-
1 AATAAT AATAAT AATAAT -AATAAT AATA-AT AATAAT AATAAT AATAAT
* *
99452411 AAT-AT AATAGT -ATACAT AATATT AA-AATT AA-AAT AA-AAT AAT
1 AATAAT AATAAT AATA-AT AATAAT AATAA-T AATAAT AATAAT AAT
99452453 GAGAAAAAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
4 1 0.02
5 19 0.29
6 37 0.57
7 8 0.12
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (6 bp):
AATAAT
Found at i:99452395 original size:22 final size:22
Alignment explanation
Indices: 99452332--99452418 Score: 56
Period size: 22 Copynumber: 4.0 Consensus size: 22
99452322 ATAATACTAT
* *
99452332 ATAATACAT-ATACATATAAGTG
1 ATAATAAATAATAAATATAA-TG
*
99452354 TTAAGTAAA-AAT-AATAATAATG
1 ATAA-TAAATAATAAAT-ATAATG
* *
99452376 CTAATAAATAATAAATATAATA
1 ATAATAAATAATAAATATAATG
*
99452398 ATAAT-AGTAATAAAATATAAT
1 ATAATAAATAAT-AAATATAAT
99452419 AGTATACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 9 0.17
22 31 0.60
23 12 0.23
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (22 bp):
ATAATAAATAATAAATATAATG
Found at i:99452430 original size:22 final size:22
Alignment explanation
Indices: 99452377--99452452 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
99452367 ATAATAATGC
99452377 TAATAAATAAT-AAATATAATAA
1 TAAT-AATAATAAAATATAATAA
*
99452399 TAATAGTAATAAAATATAATAGTA
1 TAATAATAATAAAATATAATA--A
*
99452423 TACATAATATTAAAAT-TAA-AA
1 TA-ATAATAATAAAATATAATAA
99452444 TAA-AATAAT
1 TAATAATAAT
99452453 GAGAAAAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
19 5 0.11
20 1 0.02
21 8 0.17
22 14 0.30
23 1 0.02
24 6 0.13
25 11 0.24
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (22 bp):
TAATAATAATAAAATATAATAA
Found at i:99461790 original size:25 final size:28
Alignment explanation
Indices: 99461738--99461792 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 28
99461728 TTCAATATTT
*
99461738 TTGTATGAAAATTGATATGATAGGAAAA
1 TTGTATGAAAATTGATATGATAGAAAAA
99461766 TTGTATGAAAA-T-AT-TGATAGAAAAA
1 TTGTATGAAAATTGATATGATAGAAAAA
99461791 TT
1 TT
99461793 TTATCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.46
26 2 0.08
27 1 0.04
28 11 0.42
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (28 bp):
TTGTATGAAAATTGATATGATAGAAAAA
Found at i:99466185 original size:57 final size:58
Alignment explanation
Indices: 99466122--99466298 Score: 221
Period size: 58 Copynumber: 3.1 Consensus size: 58
99466112 TCATTGTCAT
* * **** *
99466122 TTTTTATTTTTATTTTGGAGAAAACCACAGTTGTTTCAAAATGATTC-CATTTCTCCA
1 TTTTTATTTTCATTTTAGAGAAAACCACAACCATTTCAAAATGATTCTCACTTCTCCA
* * *
99466179 TTTTTATTTTCATTTTAGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTTATTTTCATTTTAGAGAAAACCACAACCATTTCAAAATGATTCTCACTTCTCCA
* * * *
99466237 TTTTCATTTTCATTTTAGAGAAAACCATAACCATTTCCAAATGTTTCTCACTTCTCCA
1 TTTTTATTTTCATTTTAGAGAAAACCACAACCATTTCAAAATGATTCTCACTTCTCCA
99466295 TTTT
1 TTTT
99466299 CATCATTTCT
Statistics
Matches: 108, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
57 38 0.35
58 70 0.65
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (58 bp):
TTTTTATTTTCATTTTAGAGAAAACCACAACCATTTCAAAATGATTCTCACTTCTCCA
Found at i:99466299 original size:58 final size:58
Alignment explanation
Indices: 99466155--99466301 Score: 251
Period size: 58 Copynumber: 2.6 Consensus size: 58
99466145 ACCACAGTTG
* * * *
99466155 TTTCAAAATGATTC-CATTTCTCCATTTTTATTTTCATTTTAGAGAAAACCATAACCA
1 TTTCCAAATGTTTCTCACTTCTCCATTTTCATTTTCATTTTAGAGAAAACCATAACCA
99466212 TTTCCAAATGTTTCTCACTTCTCCATTTTCATTTTCATTTTAGAGAAAACCATAACCA
1 TTTCCAAATGTTTCTCACTTCTCCATTTTCATTTTCATTTTAGAGAAAACCATAACCA
99466270 TTTCCAAATGTTTCTCACTTCTCCATTTTCAT
1 TTTCCAAATGTTTCTCACTTCTCCATTTTCAT
99466302 CATTTCTGTT
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
57 12 0.14
58 73 0.86
ACGTcount: A:0.29, C:0.23, G:0.05, T:0.44
Consensus pattern (58 bp):
TTTCCAAATGTTTCTCACTTCTCCATTTTCATTTTCATTTTAGAGAAAACCATAACCA
Found at i:99469765 original size:5 final size:5
Alignment explanation
Indices: 99469746--99469860 Score: 66
Period size: 5 Copynumber: 23.6 Consensus size: 5
99469736 TAATGTAAAT
* *
99469746 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA -AAAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
99469792 TATCA TGAT-A TATAG TAAAA TATAA TATGTAA TA-AA TAT-A TACAAA
1 TATAA T-ATAA TATAA TATAA TATAA TA--TAA TATAA TATAA TA-TAA
*
99469838 TAGAA TATAA TGA-AA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TAT
99469861 GATAAGGGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
3 2 0.02
4 18 0.21
5 54 0.64
6 6 0.07
7 5 0.06
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (5 bp):
TATAA
Found at i:99469787 original size:32 final size:30
Alignment explanation
Indices: 99469722--99469819 Score: 117
Period size: 30 Copynumber: 3.1 Consensus size: 30
99469712 TAATTTACAA
*
99469722 ATAAAAATATATGATAATGTAAATTATAAT
1 ATAAAAATATATGATAATGTAAAATATAAT
99469752 ATAAAAATATAAT-ATAATGTATATAATATAAT
1 ATAAAAATAT-ATGATAATGTA-A-AATATAAT
99469784 ATAAAAAATATCATGATATATAGTAAAATATAAT
1 AT-AAAAATAT-ATGATA-AT-GTAAAATATAAT
99469818 AT
1 AT
99469820 GTAATAAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.31
31 3 0.05
32 9 0.15
33 10 0.17
34 13 0.22
35 3 0.05
36 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (30 bp):
ATAAAAATATATGATAATGTAAAATATAAT
Found at i:99469794 original size:19 final size:19
Alignment explanation
Indices: 99469757--99469819 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
99469747 ATAATATAAA
***
99469757 AATATAATATAATGTATAT
1 AATATAATATAAAAAATAT
99469776 AATATAATATAAAAAATAT
1 AATATAATATAAAAAATAT
* *
99469795 CATGAT-ATATAGTAAAATAT
1 AAT-ATAATATA-AAAAATAT
99469815 AATAT
1 AATAT
99469820 GTAATAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 25 0.69
20 11 0.31
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (19 bp):
AATATAATATAAAAAATAT
Found at i:99471783 original size:43 final size:44
Alignment explanation
Indices: 99471670--99471797 Score: 150
Period size: 44 Copynumber: 2.9 Consensus size: 44
99471660 GCCATGTTGA
* * *
99471670 TATCTTTGATTTGCTCCCTGACAATACAAGGATGTCAAATCTAC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTAC
* * * * *
99471714 TATCTTCGATCTGCTCTCTGATAATACAAAGATGCCAAATTTGC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTAC
* * *
99471758 T-TCTTCGATTTGTTCCCTAACAATACAGAGATGCCAAATC
1 TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATC
99471798 ATCTTAGATT
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
43 32 0.46
44 37 0.54
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (44 bp):
TATCTTCGATTTGCTCCCTGACAATACAAAGATGCCAAATCTAC
Found at i:99471927 original size:87 final size:87
Alignment explanation
Indices: 99471790--99472109 Score: 235
Period size: 87 Copynumber: 3.7 Consensus size: 87
99471780 ATACAGAGAT
* * * * * *
99471790 GCCAAATCATCTTAGATTTGCTTCAATGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTTCGAT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAGATCTGCTATGTCTTCGAT
*
99471854 TTGTTCCTTGTAAACACAAGGAT
65 TTGTTCCTTGTAAACACAAGGAC
* * * *
99471877 GCCAAATCATCTTGGATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTGCTATGT-GTC--TG
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGTCTTCGAT-
* * * **
99471939 CT-TTCC--GTCGAATA-TGGAGAC
65 TTGTTCCTTGT-AAACACAAG-GAC
* * * *
99471960 GCCAGATTTGTTATCTTGGATCTGCTTTGATGTGA-AAACATTTGAAAGTCAGATCTGCTATGTC
1 GCCA-A---ATCATCTTGGATCTGC-TTCA-GT-ATAAACATCTGAAAGTCAGATCTGCTATGTC
* *
99472024 TTCGATTTGCTCCTTGTAAACACAAGAAC
59 TTCGATTTGTTCCTTGTAAACACAAGGAC
* * * * *
99472053 GCCAAATCATCTTGGATCTGCTTTAGTAAAAACATTTGAAGGTTAGATCTGCTATGT
1 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGT
99472110 ATTTGCTCTC
Statistics
Matches: 179, Mismatches: 35, Indels: 38
0.71 0.14 0.15
Matches are distributed among these distances:
82 3 0.02
83 9 0.05
84 6 0.03
85 1 0.01
86 3 0.02
87 89 0.50
88 7 0.04
89 40 0.22
90 3 0.02
91 1 0.01
92 5 0.03
93 9 0.05
94 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (87 bp):
GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGTCTTCGATT
TGTTCCTTGTAAACACAAGGAC
Found at i:99472414 original size:177 final size:176
Alignment explanation
Indices: 99471826--99472388 Score: 856
Period size: 176 Copynumber: 3.2 Consensus size: 176
99471816 TGTAAACACG
* * * * *
99471826 TGAAAGCCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
* * * *
99471891 GATCTGCTTCAGTATAAACAGCTGAAGGTTAGATCTGCTATGTGTCTGCTTTCCGTCGAATATGG
66 GATCTGCTTTAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
* *
99471956 AGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATT
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
99472002 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
* * * * *
99472067 GATCTGCTTTAGTAAAAACATTTGAAGGTTAGATCTGCTATGTATTTGCTCTCCATTTGAATATG
66 GATCTGCTTTAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-GTCGAATATG
* *
99472132 GAGATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAGAACATC
130 GAGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
* * * * * * * *
99472179 CGAAAGTCAGATCTTCTATGTTTTCAATTTACTCCTTGTAGACATAAGAATGCCAAATCATCTTG
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
* *
99472244 AATCTACTTTAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
66 GATCTGCTTTAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
*
99472309 AGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
131 AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
99472355 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTC
1 TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTC
99472389 TTCGTCGAAG
Statistics
Matches: 345, Mismatches: 41, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
176 188 0.54
177 157 0.46
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (176 bp):
TGAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTG
GATCTGCTTTAGTAAAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGG
AGACGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATC
Found at i:99472464 original size:93 final size:94
Alignment explanation
Indices: 99471937--99472467 Score: 314
Period size: 87 Copynumber: 5.9 Consensus size: 94
99471927 GCTATGTGTC
* * * * * * * *
99471937 TGCTTTCCGTCGAATATGGAGACGCCAGATTTGTTATCTTGGATCTGCTTTGATGTGAAAACATT
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
*
99472002 TGAAAGTCAGATCTGCTATGTCTTCGATT
66 TGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * *
99472031 TGCTC-CTTGT-AAACACA-AGAACGCCAAATC----ATCTTGGATCTGCTTT-A-GTAAAAACA
1 TGCTCTC-CGTCGAAGATAGAGAA-GCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* * **
99472087 TTTGAAGGTTAGATCTGCTATG---T--ATT
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * * *
99472113 TGCTCTCCATTTGAATATGGAGATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAGAACAT
1 TGCTCTCC-GTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACAT
* * * * *
99472178 CCGAAAGTCAGATCTTCTATGTTTTCAATT
65 CTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * * *
99472208 TACTC-CTTGTAG-ACATA-AGAATGCCAAATC----ATCTTGAATCTACTTT-A-GTAAAAACA
1 TGCTCTC-CGTCGAAGATAGAGAA-GCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACA
* ** *
99472264 TCTGAAGGTTAGATCTGCTATG---T-G-TC
64 TCTGAAAGCCAGATCTGCTATGTCTTCGATT
* * * * * *
99472290 TGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCTTGGATCTTCTTTGATGTGAAAACATC
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
*
99472355 TGAAAGTCAGATCTGCTATGTCTTCGATT
66 TGAAAGCCAGATCTGCTATGTCTTCGATT
* *
99472384 TGCTCTTCGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGATCTGC-TTCA-GTGTAAACA-
1 TGCTCTCCGTCGAAGATAGAGAAGCCAAATC-TGTTATCTTGGATCTGCTTTCATGTGAAAACAT
*
99472446 CATGAAGGCCAGATCTGCTATG
65 C-TGAAAGCCAGATCTGCTATG
99472468 CTTTGGTCTG
Statistics
Matches: 334, Mismatches: 68, Indels: 71
0.71 0.14 0.15
Matches are distributed among these distances:
82 16 0.05
83 13 0.04
84 15 0.04
85 3 0.01
87 67 0.20
88 19 0.06
89 59 0.18
90 24 0.07
92 8 0.02
93 48 0.14
94 39 0.12
95 23 0.07
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (94 bp):
TGCTCTCCGTCGAAGATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTCATGTGAAAACATC
TGAAAGCCAGATCTGCTATGTCTTCGATT
Found at i:99482803 original size:20 final size:20
Alignment explanation
Indices: 99482766--99482808 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
99482756 GACCATTTTC
**
99482766 AAATCGAGTTTTGGAAAATCG
1 AAATCGAGTTTTAAAAAAT-G
99482787 AAATCGA-TTTTAAAAAATG
1 AAATCGAGTTTTAAAAAATG
99482806 AAA
1 AAA
99482809 ACGGGAGTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 9 0.45
21 7 0.35
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (20 bp):
AAATCGAGTTTTAAAAAATG
Found at i:99484453 original size:22 final size:21
Alignment explanation
Indices: 99484418--99484493 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
99484408 AAAAGGTATC
* *
99484418 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
99484439 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
99484462 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
99484481 TGC-AATCATATCT
1 TACAAATCATATCT
99484494 AAAATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:99484478 original size:19 final size:19
Alignment explanation
Indices: 99484454--99484525 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
99484444 AATCATATCT
99484454 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99484473 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
99484491 TCTAAAATTG--TATCATA
1 TCTAAGATTGCATATCATA
99484508 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99484526 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 15 0.31
19 18 0.38
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99484684 original size:23 final size:22
Alignment explanation
Indices: 99484643--99484685 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
99484633 CTTGGACTTC
**
99484643 ATTTTTTTTTTGGGTTTATTAT
1 ATTTTTTTTTTGGACTTATTAT
99484665 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
99484686 TTTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.70
Consensus pattern (22 bp):
ATTTTTTTTTTGGACTTATTAT
Found at i:99485273 original size:261 final size:256
Alignment explanation
Indices: 99484839--99485321 Score: 725
Period size: 261 Copynumber: 1.9 Consensus size: 256
99484829 AAGACTATCA
* *
99484839 TGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATCTGCTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAAACGCCAAATCTGCTTCTTCGATTTGTT
* * * * *
99484904 TTCTGATAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
* * *
99484969 TCTGCTGTGTCTTCGATTTGCTCCTTATGAACACAAGGATGCCAAATCATCTTGGATCTGCTTCA
131 TCAGCTATGTCTTCGATTTGCTCCTTATGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
99485034 GTAAAATCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
196 G-----TCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTC
99485099 T
256 T
* * * *
99485100 TGTTGATATCTTTGATCTGCTCTCCGCCGAATACAGAAACGCCAAATTTGTTTCTTCGATTTGTT
1 TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAAACGCCAAATCTGCTTCTTCGATTTGTT
* * *
99485165 CTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGAAAACCAAA
66 CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
* *
99485230 TCAGCTATGTCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGGATCTGCTTC
131 TCAGCTATGTCTTCGATTTGCTCCTTATGAA-CACAAGGATGCCAAACCATCTTGGATCTGCTTC
*
99485294 AGTCATCTGAAGGTTAGATCTGCTATGT
195 AGTCATCTGAAGGTCAGATCTGCTATGT
99485322 ATCTGCTCTC
Statistics
Matches: 201, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
256 25 0.12
260 2 0.01
261 174 0.87
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (256 bp):
TGTTGATATCTTCGATCTGCTCTCCGCCGAACACAGAAACGCCAAATCTGCTTCTTCGATTTGTT
CTCTAACAATAAAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGAAAACCAAA
TCAGCTATGTCTTCGATTTGCTCCTTATGAACACAAGGATGCCAAACCATCTTGGATCTGCTTCA
GTCATCTGAAGGTCAGATCTGCTATGTCTTTAATCTGCTTCTTGTAAACTTATGACTGTCT
Found at i:99485601 original size:205 final size:205
Alignment explanation
Indices: 99485153--99485906 Score: 1284
Period size: 205 Copynumber: 3.7 Consensus size: 205
99485143 AAATTTGTTT
*
99485153 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
99485218 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
99485283 GGATCTGCTTCA--GT---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
99485343 AGATGTCAGA
196 AGATGCCAGA
* *
99485353 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
99485418 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACTATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
99485483 GGATCTGCTTCAGTGTAAACATCTGAAGTTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
99485548 AGATGCCAGA
196 AGATGCCAGA
*
99485558 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
99485623 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGTACAAGGATGTCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
99485688 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAG
131 GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
99485753 AGATGCCAAA
196 AGATGCCAGA
99485763 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
99485828 ACGAAAACCAAATTAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
99485893 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
99485907 CCAGATCTAC
Statistics
Matches: 521, Mismatches: 27, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
200 136 0.26
202 2 0.00
205 375 0.72
206 8 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:99489668 original size:6 final size:6
Alignment explanation
Indices: 99489651--99489729 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
99489641 TATTAGAACT
* * *
99489651 AGAATT AGAATC AGAATC AAAATC AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
99489700 AGTATC AGGTAAT- AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
99489730 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 4 0.07
6 46 0.79
7 5 0.09
8 3 0.05
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:99489686 original size:31 final size:31
Alignment explanation
Indices: 99489651--99489729 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
99489641 TATTAGAACT
* *
99489651 AGAATTAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
** *
99489682 AGAATCAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
*
99489713 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
99489730 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:99489691 original size:25 final size:25
Alignment explanation
Indices: 99489657--99489726 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
99489647 AACTAGAATT
99489657 AGAATCAGAATCAAAATCAGGTGA-C
1 AGAATCAGAATCAAAATCAGGT-ATC
*
99489682 AGAATCAGAATCAGAATCA-GTATC
1 AGAATCAGAATCAAAATCAGGTATC
99489706 AGGTAAT-AGAATCAAAATCAG
1 A-G-AATCAGAATCAAAATCAG
99489727 AATGTGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 31 0.79
26 3 0.08
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAAAATCAGGTATC
Found at i:99489896 original size:27 final size:26
Alignment explanation
Indices: 99489848--99489907 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
99489838 GCGAGGCTGC
* *
99489848 CAGATATTGTGACGAAGTCACCGGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
99489875 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
99489901 CAGATAT
1 CAGATAT
99489908 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:99490272 original size:27 final size:27
Alignment explanation
Indices: 99490242--99490520 Score: 298
Period size: 27 Copynumber: 10.3 Consensus size: 27
99490232 TGGGTAAAAT
* * *
99490242 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
99490269 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* **
99490296 AGTAATTCAACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
99490323 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
99490350 GTTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
99490377 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
99490404 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
99490431 TGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
99490458 TGT-ATTTCTACCATACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
99490485 TGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
99490512 GGTAATTTT
1 GGTAATTTT
99490521 GTAAATCGAG
Statistics
Matches: 219, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 7 0.03
27 205 0.94
28 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:99490301 original size:54 final size:54
Alignment explanation
Indices: 99490242--99490520 Score: 330
Period size: 54 Copynumber: 5.2 Consensus size: 54
99490232 TGGGTAAAAT
* * * * *
99490242 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* **
99490296 AGTAATTCAACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * * * ** *
99490350 GTTAATTCTACCTTACAGGGGTATTTTAGTAATTT-TACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTC
* *
99490404 GGT-ATTTCTACCCTACAAGGGTATTTCTGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * *
99490458 TGT-ATTTCTACCATACAAGGGTATTTCTGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
99490512 GGTAATTTT
1 GGTAATTTT
99490521 GTAAATCGAG
Statistics
Matches: 193, Mismatches: 28, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
53 7 0.04
54 178 0.92
55 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
Found at i:99490368 original size:81 final size:81
Alignment explanation
Indices: 99490246--99490518 Score: 386
Period size: 81 Copynumber: 3.4 Consensus size: 81
99490236 TAAAATGGTA
* * * *
99490246 ATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCAACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
99490310 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * *
99490326 ATTTCTACCCTACAAGGGTATTTCGTTAATTCTACCTTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
99490391 ACAGGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * * * *
99490407 ATTTCTACCCTACAAGGGTATTTCTGTATTTCTACCCTATAAGGGTATTTCTGTATTTCTACCAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
99490472 ACAAGGGTATTTCTGT
66 ACAAGGGTATTTCGGT
99490488 ATTTCTACCCTACAAGGGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
99490519 TTGTAAATCG
Statistics
Matches: 168, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 4 0.02
81 164 0.98
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:99490532 original size:27 final size:28
Alignment explanation
Indices: 99490503--99490897 Score: 287
Period size: 27 Copynumber: 14.6 Consensus size: 28
99490493 TACCCTACAA
* * *
99490503 GGGTATTTCGGTAATTTTGTAAATCGA-
1 GGGTATTTTGGTAATTTTATAAATCCAG
**** *
99490530 GGGTAAAACGGTAATTTTGTAAAT-CAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* * * *
99490557 GGGTACTTTGGTAATTTTACAAGTCGA-
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *** * ** *
99490584 AGGTATTTCAATAATTTTACAGGTCGA-
1 GGGTATTTTGGTAATTTTATAAATCCAG
** * *
99490611 GGGTATTTCAGTAATTTCACAAAT-CAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* * *
99490638 GGGTATTTTGATAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490665 GGGTATTTTGGTAATTTTA-CAAGCCAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490692 GGGTATTTTGGTAATTTTA-CAAGCCAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490719 GGGTATTTTGGTAATTTTATAAA-CAAA
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490746 GGGTATTTTAGTAATTTTACAAA-CCAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490773 GGGTATTTTGGTAATTTTGTAAA-CCAA
1 GGGTATTTTGGTAATTTTATAAATCCAG
* * *
99490800 GAGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
* *
99490827 GGGTATTTTGGTGATTTTATAAA-CCAA
1 GGGTATTTTGGTAATTTTATAAATCCAG
* * *
99490854 AGGTATTTTAGTAATTTTACAAA-CCAG
1 GGGTATTTTGGTAATTTTATAAATCCAG
99490881 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
99490898 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 60, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.01
27 295 0.98
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTATAAATCCAG
Found at i:99490670 original size:81 final size:81
Alignment explanation
Indices: 99490540--99490897 Score: 387
Period size: 81 Copynumber: 4.4 Consensus size: 81
99490530 GGGTAAAACG
** * * * * * * *
99490540 GTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTAC-AAGTCGAAGGTATTTCAATAATTTTAC
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTAC
*** *
99490604 AGGTC-GAGGGTATTTCA
65 AAACCAG-GGGTATTTTA
* * * *
99490621 GTAATTTCACAAATCAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
* *
99490686 AGCCAGGGGTATTTTG
66 AACCAGGGGTATTTTA
* * * *
99490702 GTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
*
99490767 AACCAGGGGTATTTTG
66 AACCAGGGGTATTTTA
** * * * * *
99490783 GTAATTTTGTAAACCAAGAGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
**
99490848 AACCAAAGGTATTTTA
66 AACCAGGGGTATTTTA
99490864 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
99490898 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
81 228 0.98
82 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACA
AACCAGGGGTATTTTA
Found at i:99490904 original size:27 final size:27
Alignment explanation
Indices: 99490611--99490897 Score: 340
Period size: 27 Copynumber: 10.6 Consensus size: 27
99490601 TACAGGTCGA
** * * *
99490611 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
99490638 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490665 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490692 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490719 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490746 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490773 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
99490800 GAGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
99490827 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
99490854 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
99490881 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
99490898 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 222 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:99490904 original size:54 final size:54
Alignment explanation
Indices: 99490540--99490897 Score: 373
Period size: 54 Copynumber: 6.6 Consensus size: 54
99490530 GGGTAAAACG
** * * * ** * *
99490540 GTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTA
* *** ** * * * **
99490594 ATAATTTTACAGGTC-GAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTT-
1 GTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTA
* * * ** *
99490647 GATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTG
1 G-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTA
*
99490702 GTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAA-CAAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAA-GGTATTTTA
* *
99490756 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACC-AAGAGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAAG-GTATTTTA
* *
99490810 GTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAAGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTA
99490864 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
99490898 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
53 4 0.02
54 246 0.96
55 6 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTA
Found at i:99490906 original size:81 final size:81
Alignment explanation
Indices: 99490611--99490897 Score: 394
Period size: 81 Copynumber: 3.5 Consensus size: 81
99490601 TACAGGTCGA
* * * *
99490611 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
*
99490676 TAATTTTACAAGCCAG
66 TAATTTTACAAACCAG
* * * * * *
99490692 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
99490757 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
* ** * *
99490773 GGGTATTTTGGTAATTTTGTAAACCAAGAGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
* * *
99490838 TGATTTTATAAACCAA
66 TAATTTTACAAACCAG
*
99490854 AGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
99490898 GGTAAACTAA
Statistics
Matches: 177, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 177 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTACAAACCAG
Found at i:99491614 original size:71 final size:70
Alignment explanation
Indices: 99491476--99491615 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 70
99491466 GCCACAAAAT
*
99491476 CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATATCTAA
1 CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATATCGAA
99491541 GATTG
66 GATTG
99491546 CATATCATATCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTGCATATCAT-T
1 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG--TATCATAT
99491609 -GAAGATT
62 CGAAGATT
99491616 ATATTTCCAT
Statistics
Matches: 65, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
70 6 0.09
71 40 0.62
72 13 0.20
73 6 0.09
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (70 bp):
CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATATCGAA
GATTG
Found at i:99491615 original size:17 final size:19
Alignment explanation
Indices: 99491483--99491607 Score: 201
Period size: 17 Copynumber: 6.9 Consensus size: 19
99491473 AATCATATCT
99491483 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99491502 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
99491519 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
99491536 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
99491555 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
99491573 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
99491590 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99491608 TGAAGATTAT
Statistics
Matches: 101, Mismatches: 0, Indels: 10
0.91 0.00 0.09
Matches are distributed among these distances:
17 50 0.50
18 16 0.16
19 35 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99491627 original size:54 final size:53
Alignment explanation
Indices: 99491483--99491607 Score: 232
Period size: 54 Copynumber: 2.3 Consensus size: 53
99491473 AATCATATCT
99491483 TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
*
99491536 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTG-TATCATATCTAAGATTGTATCATA
99491590 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99491608 TGAAGATTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
53 29 0.41
54 41 0.59
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (53 bp):
TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
Found at i:99493589 original size:30 final size:31
Alignment explanation
Indices: 99493553--99493649 Score: 117
Period size: 32 Copynumber: 3.1 Consensus size: 31
99493543 TAATTTACAA
*
99493553 ATAAAAATAT-ATGATAATGTAAATTATAAT
1 ATAAAAATATAATGATAATGTAAAATATAAT
99493583 ATAAAAATATAAT-ATAATGTATATAATATAAT
1 ATAAAAATATAATGATAATGTA-A-AATATAAT
* *
99493615 ATAAAAATATCATGATGTATAGTAAAATATAAT
1 ATAAAAATATAATGAT-AAT-GTAAAATATAAT
99493648 AT
1 AT
99493650 GTAATAAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
30 18 0.31
31 3 0.05
32 19 0.33
33 12 0.21
34 3 0.05
35 3 0.05
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (31 bp):
ATAAAAATATAATGATAATGTAAAATATAAT
Found at i:99493596 original size:5 final size:5
Alignment explanation
Indices: 99493577--99493690 Score: 57
Period size: 5 Copynumber: 23.6 Consensus size: 5
99493567 TAATGTAAAT
*
99493577 TATAA TATAA -A-AA TATAA TATAA TGT-A TATAA TATAA TATAA -A-AA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * * *
99493622 TATCA TGAT-G TATAG TAAAA TATAA TATGTAA TA-AA TAT-A TACAAA
1 TATAA T-ATAA TATAA TATAA TATAA TA--TAA TATAA TATAA TA-TAA
*
99493668 TAGAA TATAA TGA-AA TATAA TAT
1 TATAA TATAA T-ATAA TATAA TAT
99493691 GATAAGGGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
3 4 0.05
4 17 0.20
5 53 0.62
6 6 0.07
7 5 0.06
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (5 bp):
TATAA
Found at i:99494262 original size:17 final size:19
Alignment explanation
Indices: 99494226--99494263 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
99494216 TTTTAGTTAG
99494226 TATTATGAGATAAAATTAT
1 TATTATGAGATAAAATTAT
*
99494245 TATTATTAGA-AAAA-TAT
1 TATTATGAGATAAAATTAT
99494262 TA
1 TA
99494264 CTGTATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
TATTATGAGATAAAATTAT
Found at i:99496135 original size:27 final size:28
Alignment explanation
Indices: 99496089--99496156 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
99496079 GCGTAGATCA
99496089 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
99496117 CGAAATTA-CCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
99496144 CGATA-TACCCCTA
1 CGAAATTACCCCTA
99496157 GGGTTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 2 0.05
27 27 0.73
28 8 0.22
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:99512769 original size:44 final size:44
Alignment explanation
Indices: 99512466--99512742 Score: 421
Period size: 44 Copynumber: 6.3 Consensus size: 44
99512456 CGAATCCTGT
99512466 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* *
99512510 AGATTTGGCATCTCTGTATTGGCAGAGGGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* ** *
99512554 AAATTTGGTGTCTCTGTATTGGCGAAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* * *
99512598 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGGTCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* *
99512642 AGATTTGGAATCTCTGTATTGGCGGAGAGCAGATCGAAGAT-TC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
* *
99512685 TAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAGC
1 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
99512730 AGATTTGGCATCT
1 AGATTTGGCATCT
99512743 TTGTGTTGAC
Statistics
Matches: 206, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
43 1 0.00
44 204 0.99
45 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGC
Found at i:99515784 original size:25 final size:25
Alignment explanation
Indices: 99515755--99515802 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99515745 TTATAATATG
* * *
99515755 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
99515780 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
99515803 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:99515871 original size:20 final size:20
Alignment explanation
Indices: 99515846--99515904 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
99515836 TAAATATGGT
99515846 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
99515866 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
99515886 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
99515905 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:99515985 original size:23 final size:24
Alignment explanation
Indices: 99515955--99516049 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
99515945 GAGGAAGTGA
99515955 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
99515978 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
99516002 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
99516026 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
99516050 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:99516023 original size:47 final size:49
Alignment explanation
Indices: 99515956--99516049 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
99515946 AGGAAGTGAA
*
99515956 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
99516003 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
99516050 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:99516292 original size:38 final size:38
Alignment explanation
Indices: 99516241--99516372 Score: 237
Period size: 38 Copynumber: 3.4 Consensus size: 38
99516231 CGTTTACAGT
99516241 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
*
99516279 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
99516317 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
*
99516355 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
99516373 GCATGATTGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 77 0.86
39 13 0.14
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
Found at i:99525139 original size:36 final size:38
Alignment explanation
Indices: 99525098--99525187 Score: 116
Period size: 38 Copynumber: 2.4 Consensus size: 38
99525088 CTATAACTAG
*
99525098 AATACACGGGCATGATGTACATC-TA-TATCAATATAT
1 AATACACGGGCATGATGTACATCAAACTATCAATATAT
*
99525134 AATACACGGGCATG--GTACTTCAGAAGCTATCAATATAT
1 AATACACGGGCATGATGTACATCA-AA-CTATCAATATAT
99525172 AATACACGGGCATGAT
1 AATACACGGGCATGAT
99525188 ACTTCAGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
34 6 0.13
36 15 0.33
38 25 0.54
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (38 bp):
AATACACGGGCATGATGTACATCAAACTATCAATATAT
Found at i:99525174 original size:38 final size:38
Alignment explanation
Indices: 99525123--99525199 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
99525113 TGTACATCTA
*
99525123 TATCAATATATAATACACGGGCATGGTACTTCAGAAGC
1 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
99525161 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
1 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
99525199 T
1 T
99525200 CTAAGATTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (38 bp):
TATCAATATATAATACACGGGCATGATACTTCAGAAGC
Found at i:99534089 original size:36 final size:38
Alignment explanation
Indices: 99534048--99534137 Score: 116
Period size: 38 Copynumber: 2.4 Consensus size: 38
99534038 CTATAACTAG
*
99534048 AATACACGGGCATGATGTACATC-TA-TATCAATATAT
1 AATACACGGGCATGATGTACATCAAACTATCAATATAT
*
99534084 AATACACGGGCATG--GTACTTCAGAAGCTATCAATATAT
1 AATACACGGGCATGATGTACATCA-AA-CTATCAATATAT
99534122 AATACACGGGCATGAT
1 AATACACGGGCATGAT
99534138 ACTTCAGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
34 6 0.13
36 15 0.33
38 25 0.54
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (38 bp):
AATACACGGGCATGATGTACATCAAACTATCAATATAT
Found at i:99534124 original size:38 final size:38
Alignment explanation
Indices: 99534073--99534149 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
99534063 TGTACATCTA
*
99534073 TATCAATATATAATACACGGGCATGGTACTTCAGAAGC
1 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
99534111 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
1 TATCAATATATAATACACGGGCATGATACTTCAGAAGC
99534149 T
1 T
99534150 CTAAGATTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (38 bp):
TATCAATATATAATACACGGGCATGATACTTCAGAAGC
Found at i:99536763 original size:49 final size:49
Alignment explanation
Indices: 99536703--99536917 Score: 358
Period size: 49 Copynumber: 4.4 Consensus size: 49
99536693 TACATATATG
* * * * *
99536703 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
99536752 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
99536801 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
99536850 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
99536899 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
99536918 TAATGTAAAA
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 159 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Done.