Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 333 of 345
Found at i:99537069 original size:37 final size:37
Alignment explanation
Indices: 99537019--99537103 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
99537009 GGAATATGTT
*
99537019 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
99537056 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
99537093 CCGGGTAAGAC
1 CCGGGTAAGAC
99537104 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:99539187 original size:15 final size:15
Alignment explanation
Indices: 99539146--99539187 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
99539136 TTCTATGACC
99539146 TTTTTATATTTAATT
1 TTTTTATATTTAATT
*
99539161 TTTCTATAATTT-ATT
1 TTTTTAT-ATTTAATT
99539176 ATTTTTATATTT
1 -TTTTTATATTT
99539188 TTCTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTATATTTAATT
Found at i:99539201 original size:25 final size:25
Alignment explanation
Indices: 99539149--99539201 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
99539139 TATGACCTTT
**
99539149 TTATATTTAATTTTTCTATAATTTA
1 TTATATTTAATTTTTCTATAATAAA
*
99539174 TTATTTTTATATTTTTCT-TAATAAA
1 TTATATTTA-ATTTTTCTATAATAAA
99539199 TTA
1 TTA
99539202 ATAATATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATATTTAATTTTTCTATAATAAA
Found at i:99539224 original size:17 final size:17
Alignment explanation
Indices: 99539202--99539255 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 17
99539192 TAATAAATTA
99539202 ATAATATTTTATAATAT
1 ATAATATTTTATAATAT
*
99539219 ATAATATATTTATATATTT
1 ATAATAT-TTTATA-ATAT
*
99539238 ATATTATTTTTATAATAT
1 ATAATA-TTTTATAATAT
99539256 TTCTAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 7 0.23
18 9 0.29
19 14 0.45
20 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATAATATTTTATAATAT
Found at i:99539257 original size:20 final size:20
Alignment explanation
Indices: 99539202--99539289 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 20
99539192 TAATAAATTA
99539202 ATAATA-TTTTATAATA--T
1 ATAATATTTTTATAATATTT
*
99539219 ATAATATATTTAT-ATATTT
1 ATAATATTTTTATAATATTT
*
99539238 ATATTATTTTTATAATATTT
1 ATAATATTTTTATAATATTT
* *
99539258 CTAAAATTTTTATACA-ATTT
1 ATAATATTTTTATA-ATATTT
99539278 -TAATAATTTTTA
1 ATAAT-ATTTTTA
99539290 GAATTAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
17 9 0.16
18 5 0.09
19 15 0.26
20 28 0.48
21 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATATTTTTATAATATTT
Found at i:99540736 original size:10 final size:10
Alignment explanation
Indices: 99540713--99540742 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
99540703 TGGACATGAA
99540713 AATAAATAAAG
1 AATAAAT-AAG
99540724 AATAAATAAG
1 AATAAATAAG
99540734 AATAAATAA
1 AATAAATAA
99540743 AAATTATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (10 bp):
AATAAATAAG
Found at i:99541768 original size:156 final size:153
Alignment explanation
Indices: 99541313--99541755 Score: 550
Period size: 156 Copynumber: 2.9 Consensus size: 153
99541303 AAATTATTAC
* * * * *
99541313 TTTTTTTTAAAAAT-AAAAATTTTATTTAGAAATAGTTG--AAAAAGATCAAAAATTTGTTTTAA
1 TTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAATC-AAAATTTGTTTT--
* * *
99541375 AAAAAATTCAAAATTTTCCTTTAAAATGACT--AAAAAACAAATTTTT-ATTTTAAAAATCTAAA
63 AAAAAATT-TAAACTTTCCTTTAAAATGACTAAAAAAAACAAATTTTTAATTTTTAAAATCTAAA
99541437 CTTTCTC-TTTT-AAAAAAAAACACTA
127 CTTTCTCTTTTTAAAAAAAAAACACTA
* *
99541462 TTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAAT---TATTTTTTTTAAA
1 TTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAATCAAAATTTGTTTT-AA
* *
99541524 AAAATTTAAACTTTCCTTAAAAATGACTAAAAAAAACAAACATATTTTTATTTTTTAAAATCTAA
65 AAAATTTAAACTTTCCTTTAAAATGACTAAAAAAAAC--A-A-ATTTTTAATTTTTAAAATCTAA
* **
99541589 ACTGTCTCATTTAAAAAAAAAAAACACTA
126 ACTTTCTC-TTTTTAAAAAAAAAACACTA
*
99541618 TTTTTCTTAAAGATCAAAGCTTTTATTTTGAAATAGTTGAAAAAAAAATCAAAACTTTGTTTT-A
1 TTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAATCAAAA-TTTGTTTTAA
*
99541682 AAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAACAAATTTTTAATTTTTAAAATCTAAACTT
65 AAAATTTAAACTTTCCTTTAAAATGACTAAAAAAAACAAATTTTTAATTTTTAAAATCTAAACTT
99541747 TCTCTTTTT
130 TCTCTTTTT
99541756 TTTAAAAAAA
Statistics
Matches: 253, Mismatches: 24, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
146 19 0.08
147 9 0.04
148 15 0.06
149 12 0.05
150 23 0.09
151 1 0.00
152 13 0.05
153 23 0.09
154 28 0.11
155 3 0.01
156 63 0.25
158 36 0.14
159 1 0.00
160 7 0.03
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (153 bp):
TTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAATCAAAATTTGTTTTAAA
AAATTTAAACTTTCCTTTAAAATGACTAAAAAAAACAAATTTTTAATTTTTAAAATCTAAACTTT
CTCTTTTTAAAAAAAAAACACTA
Found at i:99543941 original size:22 final size:23
Alignment explanation
Indices: 99543911--99543953 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
99543901 ACACCGTAGC
99543911 TCGCATGAGCATCCCGATATAGA
1 TCGCATGAGCATCCCGATATAGA
99543934 TCGC-TGAGCATCCCGATATA
1 TCGCATGAGCATCCCGATATA
99543954 AGCTCTCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (23 bp):
TCGCATGAGCATCCCGATATAGA
Found at i:99555007 original size:11 final size:10
Alignment explanation
Indices: 99554974--99555006 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
99554964 TTCTGGGAAA
99554974 TTTTAAA-TT
1 TTTTAAATTT
99554983 TTTTAAATTT
1 TTTTAAATTT
*
99554993 TTTTAGATTT
1 TTTTAAATTT
99555003 TTTT
1 TTTT
99555007 TGAAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:99555242 original size:23 final size:23
Alignment explanation
Indices: 99555215--99555268 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
99555205 CGAACTAAAG
*
99555215 AACTCAAATTACTT-ATTTGAGTT
1 AACTCAAATAACTTAATTTGA-TT
*
99555238 AACTCGAATAACTTAATTTGATT
1 AACTCAAATAACTTAATTTGATT
99555261 AACTCAAA
1 AACTCAAA
99555269 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (23 bp):
AACTCAAATAACTTAATTTGATT
Found at i:99558248 original size:26 final size:26
Alignment explanation
Indices: 99558218--99558270 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
99558208 CACATTATCG
*
99558218 AAGGCTACACTATGAACATTCGTACA
1 AAGGCTACACCATGAACATTCGTACA
*
99558244 AAGGCTACACCATGAACATTTGTACA
1 AAGGCTACACCATGAACATTCGTACA
99558270 A
1 A
99558271 TCATATCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (26 bp):
AAGGCTACACCATGAACATTCGTACA
Found at i:99565103 original size:22 final size:22
Alignment explanation
Indices: 99565078--99565121 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
99565068 GAATGTATTT
*
99565078 GAATGGT-TTTTAATTGGTATGA
1 GAATGGTATTTGAATT-GTATGA
*
99565100 GAATTGTATTTGAATTGTATGA
1 GAATGGTATTTGAATTGTATGA
99565122 CTGGTTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (22 bp):
GAATGGTATTTGAATTGTATGA
Found at i:99576650 original size:20 final size:20
Alignment explanation
Indices: 99576625--99576664 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
99576615 TTTCAAAGTT
99576625 GGGTGACTGAAATGAAACCC
1 GGGTGACTGAAATGAAACCC
99576645 GGGTGACTGAAATGAAACCC
1 GGGTGACTGAAATGAAACCC
99576665 AGATGACTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.30, T:0.15
Consensus pattern (20 bp):
GGGTGACTGAAATGAAACCC
Found at i:99576671 original size:20 final size:20
Alignment explanation
Indices: 99576628--99576673 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
99576618 CAAAGTTGGG
* *
99576628 TGACTGAAATGAAACCCGGG
1 TGACTGAAATGAAACCCAGA
99576648 TGACTGAAATGAAACCCAGA
1 TGACTGAAATGAAACCCAGA
99576668 TGACTG
1 TGACTG
99576674 TTTTGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.17
Consensus pattern (20 bp):
TGACTGAAATGAAACCCAGA
Found at i:99578713 original size:120 final size:120
Alignment explanation
Indices: 99578492--99578730 Score: 370
Period size: 120 Copynumber: 2.0 Consensus size: 120
99578482 TTATCCTTTT
** * *
99578492 ATTGATCGTTTCGTGATTCAAATAAGATGACTCATTATTTTATTAAGATGTCCTTATTACGTGCT
1 ATTGATCGTTTCAAGATTCAAATAAGATGACTCATTATCTTATTAAGATGTCCTTATTACATGCT
* * *
99578557 CATTGTGTTACTTGAAATTCTCCATCGTTTTAATTTAATGTCTTCCGACAATGAA
66 CATTGTGTTACTTAAAATTCTCCATCATCTTAATTTAATGTCTTCCGACAATGAA
* * * *
99578612 ATTGGTCGTTTCAAGATTCAAATAAGATGGCTCATTATCTTATTAAGATGTTCTTATTACATGTT
1 ATTGATCGTTTCAAGATTCAAATAAGATGACTCATTATCTTATTAAGATGTCCTTATTACATGCT
*
99578677 CATTGTGTTACTTAAAATTCTCCATCATCTTGATTTAATGTCTTCCGACAATGA
66 CATTGTGTTACTTAAAATTCTCCATCATCTTAATTTAATGTCTTCCGACAATGA
99578731 TTTTTAATGT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 107 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (120 bp):
ATTGATCGTTTCAAGATTCAAATAAGATGACTCATTATCTTATTAAGATGTCCTTATTACATGCT
CATTGTGTTACTTAAAATTCTCCATCATCTTAATTTAATGTCTTCCGACAATGAA
Found at i:99580098 original size:17 final size:17
Alignment explanation
Indices: 99580078--99580111 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
99580068 AGGTTTAGGT
99580078 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
99580095 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
99580112 AAATTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:99587491 original size:13 final size:13
Alignment explanation
Indices: 99587473--99587497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99587463 TTAAGCCAAG
99587473 AACAGAGAACAAA
1 AACAGAGAACAAA
99587486 AACAGAGAACAA
1 AACAGAGAACAA
99587498 TGCGAGGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.16, T:0.00
Consensus pattern (13 bp):
AACAGAGAACAAA
Found at i:99596805 original size:30 final size:30
Alignment explanation
Indices: 99596771--99596830 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
99596761 CTTTAATATG
*
99596771 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
99596801 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
99596831 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:99607011 original size:45 final size:45
Alignment explanation
Indices: 99606956--99607117 Score: 164
Period size: 45 Copynumber: 3.6 Consensus size: 45
99606946 CCGATGTCTT
* * * * *
99606956 AGACATGGTCTTACTCGTAACCATATATATCGATGCTAACATACC
1 AGACGTGGTCTTACTCGAAAACACATATATCGATGCCAACATACC
* * * ** *
99607001 AGATGTGGTCTTACACGAAAACACATATATTGATGCCAATGTCCC
1 AGACGTGGTCTTACTCGAAAACACATATATCGATGCCAACATACC
** *
99607046 AGACGTGGTCTTACAT-GAAAACACATATATCGATGCCAATGTCCC
1 AGACGTGGTCTTAC-TCGAAAACACATATATCGATGCCAACATACC
* *
99607091 AGACATGGTCTTACACGAAAACACATA
1 AGACGTGGTCTTACTCGAAAACACATA
99607118 GCATAGTCCT
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
45 99 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (45 bp):
AGACGTGGTCTTACTCGAAAACACATATATCGATGCCAACATACC
Found at i:99611752 original size:30 final size:30
Alignment explanation
Indices: 99611716--99611817 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 30
99611706 AATGAAAACA
* * *
99611716 CACACGGCCTGGTGATATTGCCTTGTGACC
1 CACACGGCCTGGCGACATGGCCTTGTGACC
* *
99611746 CACACGGCTTGGCGACATGGCCTTGTAACC
1 CACACGGCCTGGCGACATGGCCTTGTGACC
99611776 CACACGGCCTGGCGACATGGCCTTGTGACC
1 CACACGGCCTGGCGACATGGCCTTGTGACC
99611806 CACACGGCCTGG
1 CACACGGCCTGG
99611818 ACACACGAGC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (30 bp):
CACACGGCCTGGCGACATGGCCTTGTGACC
Found at i:99611904 original size:22 final size:21
Alignment explanation
Indices: 99611867--99611918 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
99611857 ATCACCCCAA
*
99611867 TTTT-ATTTTATTTTATTTAT
1 TTTTAATTTTATATTATTTAT
99611887 TTTTAATTGTTATATTATTTAT
1 TTTTAATT-TTATATTATTTAT
99611909 TTTT-ATTTTA
1 TTTTAATTTTA
99611919 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTAATTTTATATTATTTAT
Found at i:99611925 original size:22 final size:20
Alignment explanation
Indices: 99611867--99612010 Score: 79
Period size: 21 Copynumber: 7.2 Consensus size: 20
99611857 ATCACCCCAA
*
99611867 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
99611887 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
*
99611909 TTTTATTTTACTA--ATTAAT
1 TTTTATTTTA-TATTATTTAT
* * *
99611928 TAATTA-ATTA-ATTAATTAT
1 T-TTTATTTTATATTATTTAT
* * *
99611947 TCTTATACTTATATTTTTTAT
1 TTTTAT-TTTATATTATTTAT
*
99611968 TTTT-TTATATATT-TTTATT
1 TTTTATTTTATATTATTTA-T
99611987 ATTTCTATTTT-TATT-TTTAT
1 -TTT-TATTTTATATTATTTAT
99612007 TTTT
1 TTTT
99612011 TTATTTTTTT
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
17 1 0.01
18 8 0.08
19 24 0.25
20 18 0.19
21 27 0.28
22 19 0.20
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:99611927 original size:4 final size:4
Alignment explanation
Indices: 99611920--99611945 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
99611910 TTTATTTTAC
99611920 TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TA
99611946 TTCTTATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:99611970 original size:6 final size:6
Alignment explanation
Indices: 99611961--99612039 Score: 56
Period size: 6 Copynumber: 12.8 Consensus size: 6
99611951 ATACTTATAT
*
99611961 TTTTTA TTTTT- TTATATA TTTTTA TTATTTCTA TTTTTA TTTTTA TTTTT-
1 TTTTTA TTTTTA TT-TTTA TTTTTA -T-TTT-TA TTTTTA TTTTTA TTTTTA
* * *
99612011 TTATT- TTTTTA TTTGCTA TTTCTA TTTTT
1 TTTTTA TTTTTA TTT-TTA TTTTTA TTTTT
99612040 TCTTTTCTCT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
5 10 0.17
6 33 0.55
7 11 0.18
8 4 0.07
9 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:99611973 original size:8 final size:8
Alignment explanation
Indices: 99611955--99612024 Score: 67
Period size: 8 Copynumber: 8.8 Consensus size: 8
99611945 ATTCTTATAC
99611955 TTATATTTT
1 TTAT-TTTT
99611964 TTATTTTT
1 TTATTTTT
99611972 TTATATATTT
1 TTAT-T-TTT
99611982 TTATTATTT
1 TTATT-TTT
*
99611991 CTA--TTT
1 TTATTTTT
99611997 TTA--TTT
1 TTATTTTT
99612003 TTATTTTT
1 TTATTTTT
99612011 TTATTTTT
1 TTATTTTT
99612019 TTATTT
1 TTATTT
99612025 GCTATTTCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
6 11 0.20
8 25 0.45
9 12 0.22
10 7 0.13
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (8 bp):
TTATTTTT
Found at i:99612030 original size:29 final size:29
Alignment explanation
Indices: 99611969--99612040 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
99611959 ATTTTTTATT
*
99611969 TTTTTATATATTTTTATTATTTCTATTTTTA
1 TTTTTAT-T-TTTTTATTATTTCTATTTCTA
*
99612000 TTTTTATTTTTTTATT-TTTTTATTTGCTA
1 TTTTTATTTTTTTATTATTTCTATTT-CTA
*
99612029 TTTCTATTTTTT
1 TTTTTATTTTTT
99612041 CTTTTCTCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 8 0.22
29 21 0.57
30 1 0.03
31 7 0.19
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (29 bp):
TTTTTATTTTTTTATTATTTCTATTTCTA
Found at i:99612036 original size:21 final size:19
Alignment explanation
Indices: 99611986--99612063 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 19
99611976 ATATTTTTAT
*
99611986 TATTTCTATTTTTATTTTTA
1 TATTTCTATTTTT-TTTTTC
* *
99612006 TTTTTTTATTTTTTTATTTGC
1 TATTTCTATTTTTTT-TTT-C
99612027 TATTTCTATTTTTTCTTTTC
1 TATTTCTATTTTTT-TTTTC
*
99612047 TCTTTCATATTTTTTTT
1 TATTTC-TATTTTTTTT
99612064 ACTGTTATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 2 0.04
20 22 0.46
21 23 0.48
22 1 0.02
ACGTcount: A:0.13, C:0.09, G:0.01, T:0.77
Consensus pattern (19 bp):
TATTTCTATTTTTTTTTTC
Found at i:99612122 original size:3 final size:3
Alignment explanation
Indices: 99612114--99612152 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
99612104 ATTGAGTTTT
* *
99612114 TTA TTA TTA TT- TTA GTA TTA TTA TTA TTA GTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
99612153 CTTTCTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:99612145 original size:15 final size:14
Alignment explanation
Indices: 99612115--99612152 Score: 67
Period size: 15 Copynumber: 2.6 Consensus size: 14
99612105 TTGAGTTTTT
99612115 TATTATTATTTTAG
1 TATTATTATTTTAG
99612129 TATTATTATTATTAG
1 TATTATTATT-TTAG
99612144 TATTATTAT
1 TATTATTAT
99612153 CTTTCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (14 bp):
TATTATTATTTTAG
Found at i:99614571 original size:13 final size:12
Alignment explanation
Indices: 99614539--99614583 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 12
99614529 GTTTATCATA
*
99614539 TTATTAT-TAAT
1 TTATTATATATT
*
99614550 TCATTATATATT
1 TTATTATATATT
99614562 TTATTTATATATT
1 TTA-TTATATATT
99614575 TTATTATAT
1 TTATTATAT
99614584 TATATCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
11 6 0.21
12 11 0.38
13 12 0.41
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTATATATT
Found at i:99614579 original size:18 final size:18
Alignment explanation
Indices: 99614562--99614648 Score: 64
Period size: 17 Copynumber: 5.2 Consensus size: 18
99614552 ATTATATATT
99614562 TTAT-TTATAT-ATTTTA
1 TTATATTATATCATTTTA
99614578 TTATATTATATCATTTTA
1 TTATATTATATCATTTTA
* * *
99614596 CTATA-TATATTA-TTCA
1 TTATATTATATCATTTTA
*
99614612 TTATGTTAT-T--TTTATA
1 TTATATTATATCATTT-TA
*
99614628 TTATATTATATTA-TTTA
1 TTATATTATATCATTTTA
99614645 TTAT
1 TTAT
99614649 GTATAATTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
15 2 0.04
16 20 0.36
17 22 0.39
18 12 0.21
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (18 bp):
TTATATTATATCATTTTA
Found at i:99614585 original size:5 final size:5
Alignment explanation
Indices: 99614556--99614645 Score: 60
Period size: 5 Copynumber: 17.6 Consensus size: 5
99614546 TAATTCATTA
* * * *
99614556 TATAT TTTAT T-TA- TATAT TTTAT TATAT TATAT CATTT TACTAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT -TATAT
* *
99614606 TATTCAT TATGT TATTTT TATAT TATAT TATAT TAT-T TAT
1 TA-T-AT TATAT TA-TAT TATAT TATAT TATAT TATAT TAT
99614646 TATGTATAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
3 1 0.01
4 8 0.12
5 42 0.62
6 11 0.16
7 6 0.09
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (5 bp):
TATAT
Found at i:99614615 original size:34 final size:31
Alignment explanation
Indices: 99614445--99614645 Score: 101
Period size: 31 Copynumber: 6.6 Consensus size: 31
99614435 TTTATTTTAA
* *
99614445 ATATT-TTA-TATATTATTTATTTTTACTATAA
1 ATATTATTATTATATTATATA-TTTTA-TATAT
* * *
99614476 ACATTATGTA-TATATGA-ATAATTTATTATAT
1 ATATTAT-TATTATATTATATATTTTA-TATAT
99614507 ATATTATT-TT-TACTTATGCAT-TGTTTATCATAT
1 ATATTATTATTATA-TTAT--ATAT-TTTAT-ATAT
* *
99614540 -TATTATTAATT-CATTATATATTTTATTTAT
1 ATATTATT-ATTATATTATATATTTTATATAT
99614570 ATATT-TTATTATATTATATCATTTTACTATAT
1 ATATTATTATTATATTATAT-ATTTTA-TATAT
*
99614602 ATATTATTCATTAT-GT-TAT-TTTTATAT-T
1 ATATTATT-ATTATATTATATATTTTATATAT
99614630 ATATTA-TATTAT-TTAT
1 ATATTATTATTATATTAT
99614646 TATGTATAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 42
0.70 0.08 0.22
Matches are distributed among these distances:
26 6 0.04
27 2 0.01
28 7 0.05
29 8 0.06
30 21 0.15
31 35 0.26
32 24 0.18
33 25 0.18
34 8 0.06
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.59
Consensus pattern (31 bp):
ATATTATTATTATATTATATATTTTATATAT
Found at i:99614642 original size:13 final size:13
Alignment explanation
Indices: 99614543--99614648 Score: 53
Period size: 13 Copynumber: 8.1 Consensus size: 13
99614533 ATCATATTAT
99614543 TATTA-ATTCATTA
1 TATTATATT-ATTA
*
99614556 TA-TATTTTATT-
1 TATTATATTATTA
*
99614567 TATATATTTTATTA
1 TAT-TATATTATTA
* *
99614581 TATTATATCATTT
1 TATTATATTATTA
*
99614594 TACTATATATATTA
1 TATTATAT-TATTA
*
99614608 TTCATTATGTTATT-
1 -T-ATTATATTATTA
99614622 T-TTATATTATATTA
1 TATTATA-T-TATTA
99614636 TATTAT-TTATTA
1 TATTATATTATTA
99614648 T
1 T
99614649 GTATAATTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 23
0.69 0.10 0.22
Matches are distributed among these distances:
11 6 0.08
12 12 0.17
13 33 0.46
14 7 0.10
15 9 0.12
16 5 0.07
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:99614648 original size:33 final size:33
Alignment explanation
Indices: 99614536--99614659 Score: 88
Period size: 30 Copynumber: 3.9 Consensus size: 33
99614526 ATTGTTTATC
*
99614536 ATAT-TATTATTAATTCAT-TATATATTTTAT-TT
1 ATATATATTATTCATT-ATGTATA-ATTTTATATT
*
99614568 ATATATTTTATT-A-TAT-TATATCATTTTACTA-T
1 ATATATATTATTCATTATGTATA--ATTTTA-TATT
*
99614600 ATATA--TTATTCATTATGT-TATTTTTATATT
1 ATATATATTATTCATTATGTATAATTTTATATT
*
99614630 ATATTATATTATTTATTATGTATAATTTTA
1 ATA-TATATTATTCATTATGTATAATTTTA
99614660 AAAATTTGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 22
0.74 0.05 0.22
Matches are distributed among these distances:
29 2 0.03
30 20 0.27
31 10 0.13
32 17 0.23
33 19 0.25
34 7 0.09
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (33 bp):
ATATATATTATTCATTATGTATAATTTTATATT
Found at i:99614653 original size:21 final size:21
Alignment explanation
Indices: 99614611--99614653 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
99614601 TATATTATTC
* *
99614611 ATTATGTTATTTTTATATTAT
1 ATTATATTATTTTTATAGTAT
99614632 ATTATATTATTTATTAT-GTAT
1 ATTATATTATTT-TTATAGTAT
99614653 A
1 A
99614654 ATTTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTATATTATTTTTATAGTAT
Found at i:99614889 original size:38 final size:38
Alignment explanation
Indices: 99614820--99614894 Score: 91
Period size: 39 Copynumber: 2.0 Consensus size: 38
99614810 ATATATTTTT
*
99614820 AAAAAATTTCTCCTTTATTATTTATATATTGT-TTTAA
1 AAAAAATTTCTCATTTATTATTTATATATTGTATTTAA
* *
99614857 AAAAAATTTACCTCATTTATTTTTTCTA-ATTGTATTTA
1 AAAAAATTT--CTCATTTATTATTTATATATTGTATTTA
99614895 GATTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 9 0.28
38 5 0.16
39 18 0.56
ACGTcount: A:0.35, C:0.09, G:0.03, T:0.53
Consensus pattern (38 bp):
AAAAAATTTCTCATTTATTATTTATATATTGTATTTAA
Found at i:99626831 original size:90 final size:90
Alignment explanation
Indices: 99626720--99627196 Score: 596
Period size: 90 Copynumber: 5.4 Consensus size: 90
99626710 TCGAAGAAGT
* * * * *
99626720 AGATTTGGCATCTCTGTATTAGGCGGGGAGTAGATTGAAGATAGAAGATCTGATATTCATGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGAAGATCTGACATTCGTGTGTT
99626785 TACATCGAAGCAGATCGAAGATGAC
66 TACATCGAAGCAGATCGAAGATGAC
** * * * *
99626810 AGATTTGGCGTCTCCATATTAGATGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGAAGATCTGACATTCGTGTGTT
99626875 TACATCGAAGCAGATCGAAGATGAC
66 TACATCGAAGCAGATCGAAGATGAC
** *
99626900 AGATTTGGCGTCTCCATATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGAAGATCTGACATTCGTGTGTT
* *
99626965 TACATCGAAGCAGATTGAAGATGAT
66 TACATCGAAGCAGATCGAAGATGAC
* ** *
99626990 AGATTTGGCATCTCTGTATTAGACGGGGAACAGATC-ATAGATAGCAGATCTG----T-GT-TG-
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGA-AGATAGAAGATCTGACATTCGTGTGT
* *
99627047 --ACATCAAAGCAGATCGAAAATGAC
65 TTACATCGAAGCAGATCGAAGATGAC
* * * *
99627071 AGATTTGGTGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCAGATCTGACATTCGTATGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGAAGATCTGACATTCGTGTGTT
* * *
99627136 TACATCAAAGCAAATCGAAGATAAC
66 TACATCGAAGCAGATCGAAGATGAC
* *
99627161 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATC
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATC
99627197 AAGGTTATTA
Statistics
Matches: 340, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
81 66 0.19
82 1 0.00
84 2 0.01
85 3 0.01
86 3 0.01
87 2 0.01
89 1 0.00
90 262 0.77
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGAAGATCTGACATTCGTGTGTT
TACATCGAAGCAGATCGAAGATGAC
Found at i:99626843 original size:45 final size:45
Alignment explanation
Indices: 99626793--99626941 Score: 133
Period size: 45 Copynumber: 3.3 Consensus size: 45
99626783 TTTACATCGA
99626793 AGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGATGGGG
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGATGGGG
* * * * * ** * * * *
99626838 AGCAGATCAAAGAT-AGTAGATCTGACAT-TCGTGTGTTTACAT-CGA
1 AGCAGATCGAAGATGA-CAGATTTGGCGTCTC-CAT-ATTAGATGGGG
*
99626883 AGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGACGGGG
1 AGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGATGGGG
*
99626928 AGTAGATCGAAGAT
1 AGCAGATCGAAGAT
99626942 AGCAGATCTG
Statistics
Matches: 74, Mismatches: 24, Indels: 12
0.67 0.22 0.11
Matches are distributed among these distances:
44 7 0.09
45 59 0.80
46 8 0.11
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGATGGGG
Found at i:99626985 original size:45 final size:44
Alignment explanation
Indices: 99626751--99626986 Score: 131
Period size: 45 Copynumber: 5.2 Consensus size: 44
99626741 GGCGGGGAGT
* * *
99626751 AGATTGAAGATAGAAGATCTGATATTCATGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGAAGC
* * * ** * * * *
99626796 AGATCGAAGAT-GACAGATTTGGCGTCTCCAT-ATTAGATGGGGAGC
1 AGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACAT-CGAAGC
* *
99626841 AGATCAAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGAAGC
* * * ** * * * *
99626886 AGATCGAAGAT-GACAGATTTGGCGTCTCCAT-ATTAGA-CGGGGAGT
1 AGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GAAGC
99626931 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGC
1 AGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGAAGC
*
99626976 AGATTGAAGAT
1 AGATCGAAGAT
99626987 GATAGATTTG
Statistics
Matches: 133, Mismatches: 44, Indels: 28
0.65 0.21 0.14
Matches are distributed among these distances:
43 1 0.01
44 15 0.11
45 101 0.76
46 15 0.11
47 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATCTGACATTCTGTGTTTACATCGAAGC
Found at i:99627024 original size:45 final size:44
Alignment explanation
Indices: 99626676--99627025 Score: 129
Period size: 45 Copynumber: 7.8 Consensus size: 44
99626666 ATGTAGATAG
* * *
99626676 CAGATTTGGCATCTCTATATTGACAGGGAACAAATCGAAGAAG-
1 CAGATTTGGCATCTCTGTATTGACAGGGAACAGATCGAAGATGA
* * * ** *
99626719 TAGATTTGGCATCTCTGTATTAGGCGGGGAGTAGATTGAAGATAGA
1 CAGATTTGGCATCTCTGTATT-GACAGGGAACAGATCGAAGAT-GA
* ** * * **
99626765 -AGATCTGATAT-TCATGTGTTTACATCGAAGCAGATCGAAGATGA
1 CAGATTTGGCATCTC-TGTATTGACAGGGAA-CAGATCGAAGATGA
* ** ** * *
99626809 CAGATTTGGCGTCTCCATATTAGATGGGGAGCAGATCAAAGAT-A
1 CAGATTTGGCATCTCTGTATT-GACAGGGAACAGATCGAAGATGA
* * * * * **
99626853 GTAGATCTGACAT-TCGTGTGTTTACATCGAAGCAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGTATTGACAGGGAA-CAGATCGAAGATGA
* ** * **
99626899 CAGATTTGGCGTCTCCATATTAGACGGGGAGTAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATT-GACAGGGAACAGATCGAAGATGA
* * * * ** *
99626943 GCAGATCTGACAT-TCGTGTGTTTACATCGAAGCAGATTGAAGATGA
1 -CAGATTTGGCATCTC-TGTATTGACAGGGAA-CAGATCGAAGATGA
* *
99626989 TAGATTTGGCATCTCTGTATTAGACGGGGAACAGATC
1 CAGATTTGGCATCTCTGTATT-GACAGGGAACAGATC
99627026 ATAGATAGCA
Statistics
Matches: 203, Mismatches: 84, Indels: 38
0.62 0.26 0.12
Matches are distributed among these distances:
43 19 0.09
44 34 0.17
45 130 0.64
46 20 0.10
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCATCTCTGTATTGACAGGGAACAGATCGAAGATGA
Found at i:99627094 original size:81 final size:81
Alignment explanation
Indices: 99626959--99627198 Score: 282
Period size: 81 Copynumber: 2.9 Consensus size: 81
99626949 CTGACATTCG
* * * * * *
99626959 TGTGTTTACATCGAAGCAGATTGAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAACAGA
1 TGTGTTGACATCAAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA
*
99627024 TCATAGATAGCAGATC
66 TCAAAGATAGCAGATC
* * *
99627040 TGTGTTGACATCAAAGCAGATCGAAAATGACAGATTTGGTGTCTCTGTATTAGACGGGGAGTAGA
1 TGTGTTGACATCAAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA
99627105 TCAAAGATAGCAGATC
66 TCAAAGATAGCAGATC
* * *
99627121 TGACATTCGTATGTTTACATCAAAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTTGACG
1 TG----T-GT-TG---ACATCAAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACG
99627186 GGGAGCAGATCAA
57 GGGAGCAGATCAA
99627199 GGTTATTAAC
Statistics
Matches: 134, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
81 73 0.54
85 1 0.01
86 2 0.01
87 2 0.01
90 56 0.42
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (81 bp):
TGTGTTGACATCAAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA
TCAAAGATAGCAGATC
Found at i:99627129 original size:171 final size:175
Alignment explanation
Indices: 99626720--99627198 Score: 651
Period size: 171 Copynumber: 2.7 Consensus size: 175
99626710 TCGAAGAAGT
* * * * * *
99626720 AGATTTGGCATCTCTGTATTAGGCGGGGAGTAGATTGAAGATAGAAGATCTGATATTCATGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
** *
99626785 TACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTAGATGGGGAGCAGATCAAAG
66 TACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAG
* * *
99626850 ATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGAC
131 ATAGCAGATCTG--A-TCGTGTG--TACATCAAAGCAGATCGAAAATGAC
**
99626900 AGATTTGGCGTCTCCATATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* * * * *
99626965 TACATCGAAGCAGATTGAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAACAGATCATAG
66 TACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAG
99627030 ATAGCAGATCTG-T-GT-TG-ACATCAAAGCAGATCGAAAATGAC
131 ATAGCAGATCTGATCGTGTGTACATCAAAGCAGATCGAAAATGAC
* * *
99627071 AGATTTGGTGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCAGATCTGACATTCGTATGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
* * * *
99627136 TACATCAAAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCAA
66 TACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAA
99627199 GGTTATTAAC
Statistics
Matches: 266, Mismatches: 33, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
171 136 0.51
174 2 0.01
175 2 0.01
176 1 0.00
180 125 0.47
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (175 bp):
AGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGTT
TACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAG
ATAGCAGATCTGATCGTGTGTACATCAAAGCAGATCGAAAATGAC
Found at i:99628708 original size:3 final size:3
Alignment explanation
Indices: 99628700--99628841 Score: 76
Period size: 3 Copynumber: 49.0 Consensus size: 3
99628690 TTGTTTATCA
*
99628700 TAT TAT TAT TAAT CAT TAT ATAT T-T TATT TAT ATAT T-T TAT TA- TAT
1 TAT TAT TAT T-AT TAT TAT -TAT TAT TA-T TAT -TAT TAT TAT TAT TAT
* * * *
99628746 TA- TAT CAT T-T TAC TA- AAT ATAT TAT TCAT TA- TAT TAT TTT TA-
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT T-AT TAT TAT TAT TAT TAT
99628788 TAT TA- TAT TA- TAT TA- TAT TA- TAT TA- TAT TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
99628829 TATT TAT TAT TAT
1 TA-T TAT TAT TAT
99628842 GTATAATTTT
Statistics
Matches: 109, Mismatches: 9, Indels: 42
0.68 0.06 0.26
Matches are distributed among these distances:
2 25 0.23
3 62 0.57
4 22 0.20
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:99628734 original size:15 final size:15
Alignment explanation
Indices: 99628716--99628828 Score: 56
Period size: 17 Copynumber: 7.1 Consensus size: 15
99628706 TATTAATCAT
99628716 TATATATTTTA-TT-
1 TATATATTTTATTTA
99628729 TATATATTTTATTATA
1 TATATATTTTATT-TA
*
99628745 TTATATCATTTTA-CTA
1 -TATAT-ATTTTATTTA
*
99628761 AATATATTATTCA-TTA
1 TATATATT-TT-ATTTA
99628777 TAT-TATTTTTATATTA
1 TATATA-TTTTAT-TTA
*
99628793 TATTATATTATATTATA
1 TA-TATATTTTATT-TA
99628810 TTATATTATTATTATTTA
1 -TATA-TATT-TTATTTA
99628828 T
1 T
99628829 TATTTATTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 28
0.70 0.05 0.25
Matches are distributed among these distances:
13 11 0.14
14 5 0.06
15 11 0.14
16 15 0.19
17 16 0.21
18 16 0.21
19 4 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATATTTTATTTA
Found at i:99628746 original size:10 final size:10
Alignment explanation
Indices: 99628727--99628852 Score: 59
Period size: 10 Copynumber: 12.4 Consensus size: 10
99628717 ATATATTTTA
99628727 TTTA-TATAT
1 TTTATTATAT
99628736 TTTATTATA-
1 TTTATTATAT
99628745 -TTA-TATCAT
1 TTTATTAT-AT
*
99628754 TTTACTAAATAT
1 TTTA-T-TATAT
* *
99628766 ATTATT-CAT
1 TTTATTATAT
* *
99628775 TATATTATTT
1 TTTATTATAT
99628785 TTATATTATAT
1 TT-TATTATAT
*
99628796 TATATTATAT
1 TTTATTATAT
*
99628806 TATATTATAT
1 TTTATTATAT
99628816 TATTATTAT-T
1 T-TTATTATAT
99628826 TATTATT-TAT
1 T-TTATTATAT
99628836 TATTATGTATAAT
1 T-TTAT-TAT-AT
99628849 TTTA
1 TTTA
99628853 AAAATTTGTA
Statistics
Matches: 91, Mismatches: 12, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
7 3 0.03
8 4 0.04
9 11 0.12
10 43 0.47
11 16 0.18
12 9 0.10
13 5 0.05
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTATTATAT
Found at i:99628747 original size:5 final size:5
Alignment explanation
Indices: 99628699--99628838 Score: 97
Period size: 5 Copynumber: 26.4 Consensus size: 5
99628689 ATTGTTTATC
* * *
99628699 ATATT ATTATT AATCATT ATA-T ATTTT ATTTAT ATATT TTATT ATATT
1 ATATT A-TATT -AT-ATT ATATT ATATT ATAT-T ATATT ATATT ATATT
* * * *
99628747 ATATC ATTTT ACTAAAT ATATT ATTCATT ATATT ATTTTT ATATT ATATT
1 ATATT ATATT A-T-ATT ATATT A-T-ATT ATATT A-TATT ATATT ATATT
99628797 ATATT ATATT ATATT ATATT ATTATT AT-TT ATTATT -TATT AT
1 ATATT ATATT ATATT ATATT A-TATT ATATT A-TATT ATATT AT
99628839 TATGTATAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
4 10 0.09
5 63 0.58
6 26 0.24
7 10 0.09
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (5 bp):
ATATT
Found at i:99628768 original size:45 final size:46
Alignment explanation
Indices: 99628717--99628838 Score: 126
Period size: 50 Copynumber: 2.6 Consensus size: 46
99628707 ATTAATCATT
*
99628717 ATATATT-TTATTTATATATTTTATTATATTATATCATTTTACTA-A
1 ATATATTATTATTTATATATTTTATTATATTATATCATATTA-TATA
* * *
99628762 ATATATTATTCATTATATTATTTTTATATTATATTATATTATATTATATT
1 ATATATTATT-ATT-TA-TATATTT-TATTATATTATATCATATTATATA
99628812 ATATTATTATTATTTAT-TA-TTTATTAT
1 ATA-TATTATTATTTATATATTTTATTAT
99628839 TATGTATAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
45 13 0.20
46 4 0.06
47 4 0.06
48 3 0.05
49 10 0.15
50 24 0.37
51 7 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (46 bp):
ATATATTATTATTTATATATTTTATTATATTATATCATATTATATA
Found at i:99628841 original size:13 final size:13
Alignment explanation
Indices: 99628700--99628841 Score: 70
Period size: 13 Copynumber: 10.7 Consensus size: 13
99628690 TTGTTTATCA
99628700 TATTATTATTAATCAT
1 TATTATTATT-AT--T
99628716 TATATATT-TTATT
1 TAT-TATTATTATT
99628729 TATATATT-TTATT
1 TAT-TATTATTATT
*
99628742 ATATTA-TATCATTT
1 -TATTATTATTA-TT
*
99628756 TACTAAATATATTATT
1 TA-T-TAT-TATTATT
*
99628772 CATTA-TATTATT
1 TATTATTATTATT
99628784 T-TTA-TATTATAT
1 TATTATTATTAT-T
99628796 TA-TATTA-TATT
1 TATTATTATTATT
99628807 ATATTA-TATTA-T
1 -TATTATTATTATT
99628819 TATTATTTATTATT
1 TATTA-TTATTATT
99628833 TATTATTAT
1 TATTATTAT
99628842 GTATAATTTT
Statistics
Matches: 103, Mismatches: 6, Indels: 37
0.71 0.04 0.25
Matches are distributed among these distances:
11 15 0.15
12 20 0.19
13 35 0.34
14 13 0.13
15 4 0.04
16 8 0.08
17 8 0.08
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:99628968 original size:15 final size:15
Alignment explanation
Indices: 99628948--99629014 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
99628938 GTTTTGCTCC
99628948 TATTTAATATAATAT
1 TATTTAATATAATAT
99628963 TATTT-ATATAAATAT
1 TATTTAATAT-AATAT
* *
99628978 ATATTAAGATATTATAT
1 -TATTTA-ATATAATAT
* *
99628995 CATATAATAT-ATAT
1 TATTTAATATAATAT
99629009 T-TTTAA
1 TATTTAA
99629015 AAAATTTCTC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
13 4 0.10
14 8 0.20
15 14 0.34
16 7 0.17
17 4 0.10
18 4 0.10
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (15 bp):
TATTTAATATAATAT
Found at i:99633465 original size:5 final size:6
Alignment explanation
Indices: 99633446--99633496 Score: 66
Period size: 6 Copynumber: 8.3 Consensus size: 6
99633436 ATTGAGTCCA
* * *
99633446 TTTATT TTTATT TTTATT TTTACTA ATTATT TTTATT TTTATG TTTATT
1 TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT TTTATT TTTATT
99633495 TT
1 TT
99633497 GTTTTTTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 34 0.89
7 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:99635346 original size:23 final size:23
Alignment explanation
Indices: 99635312--99635356 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
99635302 CCATTCCCAC
*
99635312 GGGCTGAGCACACGCCCGTGTGA
1 GGGCTGAGCACACGCCCATGTGA
99635335 GGGCT-AGCCACACGCCCATGTG
1 GGGCTGAG-CACACGCCCATGTG
99635357 CCAGCCTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.13
Consensus pattern (23 bp):
GGGCTGAGCACACGCCCATGTGA
Found at i:99640858 original size:38 final size:38
Alignment explanation
Indices: 99640799--99640961 Score: 250
Period size: 38 Copynumber: 4.4 Consensus size: 38
99640789 TCAATCATGC
*
99640799 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
99640838 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
99640876 ACTGGGCCGAAGCCTTTTCATATTTC--A--T-AT--T
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
99640907 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
99640945 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
99640962 ACTGTAAACG
Statistics
Matches: 114, Mismatches: 3, Indels: 15
0.86 0.02 0.11
Matches are distributed among these distances:
31 27 0.24
33 3 0.03
34 1 0.01
35 1 0.01
36 3 0.03
38 68 0.60
39 11 0.10
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:99640864 original size:31 final size:31
Alignment explanation
Indices: 99640822--99640935 Score: 156
Period size: 31 Copynumber: 3.5 Consensus size: 31
99640812 CCTTTTCATA
99640822 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
99640859 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
99640891 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
99640922 TTTCATATTTCATA
1 TTTCATATTTCATA
99640936 TTTCATAATA
Statistics
Matches: 75, Mismatches: 1, Indels: 7
0.90 0.01 0.08
Matches are distributed among these distances:
31 44 0.59
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.37
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:99640933 original size:69 final size:69
Alignment explanation
Indices: 99640822--99640961 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
99640812 CCTTTTCATA
*
99640822 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAATACTGGGCCGAA
99640887 GCCT
66 GCCT
*
99640891 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAATACTGGGCCGAA
99640956 GCCT
66 GCCT
99640960 TT
1 TT
99640962 ACTGTAAACG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:99641232 original size:23 final size:24
Alignment explanation
Indices: 99641167--99641247 Score: 121
Period size: 24 Copynumber: 3.4 Consensus size: 24
99641157 CTGGAGGCCT
99641167 AGCCTCTTTCAATAACTGGGGCCA-A
1 AGCC-CTTTCAATAACTGGGG-CATA
99641192 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTCAATAACTGGGGCATA
*
99641216 AGCCCTTT-TATAACTGGGGCATA
1 AGCCCTTTCAATAACTGGGGCATA
99641239 AGCCCTTTC
1 AGCCCTTTC
99641248 TCACTTCCTC
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
23 24 0.45
24 25 0.47
25 4 0.08
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (24 bp):
AGCCCTTTCAATAACTGGGGCATA
Found at i:99641323 original size:20 final size:20
Alignment explanation
Indices: 99641298--99641357 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
99641288 TATGATTACC
99641298 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
99641318 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
99641338 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
99641358 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:99641432 original size:25 final size:25
Alignment explanation
Indices: 99641400--99641447 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99641390 ATACATAAAC
* * *
99641400 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99641425 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99641448 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99643469 original size:16 final size:16
Alignment explanation
Indices: 99643448--99643486 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
99643438 TGAATTACTG
*
99643448 ATTACAGCTCTATT-C
1 ATTACAGCCCTATTAC
99643463 AATTACAGCCCTATTAC
1 -ATTACAGCCCTATTAC
99643480 ATTACAG
1 ATTACAG
99643487 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTAC
Found at i:99643676 original size:20 final size:20
Alignment explanation
Indices: 99643628--99643676 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
99643618 TAATTTTTTA
*
99643628 AAAAAATTAAAATTTATTAT
1 AAAAAATTAAAATTTAGTAT
**
99643648 AAATTATTAAAATGTT-GTAT
1 AAAAAATTAAAAT-TTAGTAT
99643668 AAAAAATTA
1 AAAAAATTA
99643677 GACAAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (20 bp):
AAAAAATTAAAATTTAGTAT
Found at i:99643743 original size:36 final size:36
Alignment explanation
Indices: 99643703--99643771 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
99643693 ATTATATAAA
*
99643703 TTTAATAAATTCTATAT-CTTTTATTATTTTTATCAC
1 TTTAATAAATTCTATATAATTTT-TTATTTTTATCAC
* * *
99643739 TTTAATCATTTTTATATAATTTTTTATTTTTAT
1 TTTAATAAATTCTATATAATTTTTTATTTTTAT
99643772 AATTTTTTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 24 0.86
37 4 0.14
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (36 bp):
TTTAATAAATTCTATATAATTTTTTATTTTTATCAC
Found at i:99643774 original size:16 final size:17
Alignment explanation
Indices: 99643748--99643780 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
99643738 CTTTAATCAT
99643748 TTTTATATAATTTTTTA
1 TTTTATATAATTTTTTA
99643765 TTTT-TATAATTTTTTA
1 TTTTATATAATTTTTTA
99643781 CAATTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATATAATTTTTTA
Found at i:99649026 original size:24 final size:24
Alignment explanation
Indices: 99648976--99649029 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
99648966 ATCTTCATGT
* *
99648976 TCATCATCTTCATCATCAGAAATA
1 TCATCATCTTCATCACCAGAAACA
*
99649000 TCATCATCTTCAATCACCA-AAGCA
1 TCATCATCTTC-ATCACCAGAAACA
99649024 TCATCA
1 TCATCA
99649030 ATCTCCACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.30
Consensus pattern (24 bp):
TCATCATCTTCATCACCAGAAACA
Found at i:99654395 original size:14 final size:12
Alignment explanation
Indices: 99654377--99654410 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 12
99654367 TTATTTTATT
99654377 TTTATTTATAATG
1 TTTATTTATAA-G
99654390 TGTTATTTATAAG
1 T-TTATTTATAAG
99654403 TTTATTTA
1 TTTATTTA
99654411 CATTCAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 7 0.35
13 3 0.15
14 10 0.50
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (12 bp):
TTTATTTATAAG
Found at i:99654688 original size:29 final size:29
Alignment explanation
Indices: 99654655--99654714 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
99654645 AGGAGAAAGA
99654655 GTACACAATCTCCTATTACAAGTTGCCTC
1 GTACACAATCTCCTATTACAAGTTGCCTC
*
99654684 GTACATAATCTCCTATTACAAGTTGCCTC
1 GTACACAATCTCCTATTACAAGTTGCCTC
99654713 GT
1 GT
99654715 TAAAAACTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (29 bp):
GTACACAATCTCCTATTACAAGTTGCCTC
Found at i:99661798 original size:20 final size:20
Alignment explanation
Indices: 99661775--99661815 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
99661765 TTTTCAGAAT
99661775 TTAACCAAATATTTCAAAAC
1 TTAACCAAATATTTCAAAAC
*
99661795 TTAAGCAAATATTTCAAAAC
1 TTAACCAAATATTTCAAAAC
99661815 T
1 T
99661816 GTCAAATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAACCAAATATTTCAAAAC
Found at i:99662845 original size:43 final size:42
Alignment explanation
Indices: 99662789--99662951 Score: 134
Period size: 42 Copynumber: 3.8 Consensus size: 42
99662779 ATGCCAACGC
* *
99662789 CCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCTGT
1 CCCAGACAG-GGTCTTACACGTAATTCAA-ATCGATGCCTATGT
* *
99662832 CCCAGACAGGGTCTTACACG-AAATCAAATACAATG-CTGATGT
1 CCCAGACAGGGTCTTACACGTAATTCAAAT-CGATGCCT-ATGT
* * ** *
99662874 CCTAGACATGGTCTTACACGTAAATCTCAAATCGAAACCTGTGT
1 CCCAGACAGGGTCTTACACGT-AAT-TCAAATCGATGCCTATGT
* * *
99662918 CCCAGACACGGTCTTACACGATATTTCAGATCGA
1 CCCAGACAGGGTCTTACACG-TAATTCAAATCGA
99662952 AGTCAACGTT
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 4 0.04
42 31 0.32
43 25 0.26
44 28 0.29
45 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
CCCAGACAGGGTCTTACACGTAATTCAAATCGATGCCTATGT
Found at i:99662881 original size:42 final size:42
Alignment explanation
Indices: 99662829--99662938 Score: 125
Period size: 44 Copynumber: 2.6 Consensus size: 42
99662819 TCGATGCCTC
* **
99662829 TGTCCCAGACAGGGTCTTACACGAAA-TCAAATAC-AATGCTG
1 TGTCCCAGACACGGTCTTACACGAAACTCAAAT-CGAAACCTG
* *
99662870 ATGTCCTAGACATGGTCTTACACGTAAATCTCAAATCGAAACCTG
1 -TGTCCCAGACACGGTCTTACACG-AAA-CTCAAATCGAAACCTG
99662915 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
99662939 TATTTCAGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
42 21 0.36
43 4 0.07
44 22 0.38
45 11 0.19
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAAATCGAAACCTG
Found at i:99667349 original size:29 final size:29
Alignment explanation
Indices: 99667288--99667349 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
99667278 CCAGCCCATG
*
99667288 TGCCCTAAAAATGGCCACACAAGCCCGTG
1 TGCCCTAAAAATGGCCACACAAGCCCGTA
* * * *
99667317 TGCCTTAAAAATGGCCATACACGCCTGTA
1 TGCCCTAAAAATGGCCACACAAGCCCGTA
99667346 TGCC
1 TGCC
99667350 AGGCCGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (29 bp):
TGCCCTAAAAATGGCCACACAAGCCCGTA
Found at i:99668391 original size:41 final size:41
Alignment explanation
Indices: 99668315--99668448 Score: 135
Period size: 41 Copynumber: 3.2 Consensus size: 41
99668305 AATACTCAAT
* ** *
99668315 ATCTCCCACACTAAGTGCCAATACATAGTTGAAGCTAT-TATA
1 ATCTCACACACTAAGTGCC-ATACATAGCCGAAGCTATCT-CA
* * * *
99668357 ATTTCGCACACTAAGTGCCTTACATAGCCGAAGCTATCTCG
1 ATCTCACACACTAAGTGCCATACATAGCCGAAGCTATCTCA
* * *
99668398 GTCTCACACACTAAGTGCCATATATAGCCGAAGCTATCTTGA
1 ATCTCACACACTAAGTGCCATACATAGCCGAAGCTATC-TCA
99668440 ATCTCACAC
1 ATCTCACAC
99668449 TAAATGCCAT
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 48 0.64
42 27 0.36
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (41 bp):
ATCTCACACACTAAGTGCCATACATAGCCGAAGCTATCTCA
Found at i:99668459 original size:40 final size:40
Alignment explanation
Indices: 99668363--99668463 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 40
99668353 TATAATTTCG
* * *
99668363 CACACTAAGTGCCTTACATAGCCGAAGCTATCTCGGTCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCT-A
*
99668404 CACACTAAGTGCCATATATAGCCGAAGCTATCTTGAATCT-
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCG-ATCTA
*
99668444 CACACTAAATGCCATATATA
1 CACACTAAGTGCCATATATA
99668464 TATAAATATC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 19 0.35
41 32 0.59
42 3 0.06
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTA
Found at i:99677096 original size:21 final size:21
Alignment explanation
Indices: 99677070--99677112 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
99677060 TTCAAGGTGG
99677070 AGATTATTGGCAATCATCCAT
1 AGATTATTGGCAATCATCCAT
99677091 AGATTATTGGCAATCATCCAT
1 AGATTATTGGCAATCATCCAT
99677112 A
1 A
99677113 CTTTGGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
AGATTATTGGCAATCATCCAT
Found at i:99677831 original size:2 final size:2
Alignment explanation
Indices: 99677824--99677853 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
99677814 GGTTGTAAGC
99677824 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99677854 TTATGTATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99681154 original size:2 final size:2
Alignment explanation
Indices: 99681147--99681175 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
99681137 TTCCTTTCTG
99681147 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
99681176 CTAGTTTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99682527 original size:21 final size:22
Alignment explanation
Indices: 99682492--99682584 Score: 95
Period size: 23 Copynumber: 4.3 Consensus size: 22
99682482 GATCAGTATA
*
99682492 GACACAT-AAGTGCCTGAA-AC
1 GACACATGAGGTGCCTGAATAC
*
99682512 GACACATGAGGTGCCT-AATAT
1 GACACATGAGGTGCCTGAATAC
*
99682533 GACACACGAGGTGCCTGAAATAC
1 GACACATGAGGTGCCTG-AATAC
*
99682556 GACACATAAAGG-GCCTGATATAC
1 GACACAT-GAGGTGCCTGA-ATAC
99682579 GACACA
1 GACACA
99682585 AAAAGTGCCT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
20 9 0.15
21 23 0.38
22 1 0.02
23 25 0.41
24 3 0.05
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (22 bp):
GACACATGAGGTGCCTGAATAC
Found at i:99682554 original size:23 final size:21
Alignment explanation
Indices: 99682501--99682561 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
99682491 AGACACATAA
*
99682501 GTGCCTGAA-ACGACACATGAG
1 GTGCCT-AATACGACACACGAG
*
99682522 GTGCCTAATATGACACACGAG
1 GTGCCTAATACGACACACGAG
99682543 GTGCCTGAAATACGACACA
1 GTGCCT--AATACGACACA
99682562 TAAAGGGCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.06
21 22 0.65
23 10 0.29
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (21 bp):
GTGCCTAATACGACACACGAG
Found at i:99682597 original size:23 final size:23
Alignment explanation
Indices: 99682543--99682597 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
99682533 GACACACGAG
* *
99682543 GTGCCTGAAATACGACACATAAA
1 GTGCCTGATATACGACACAAAAA
*
99682566 GGGCCTGATATACGACACAAAAA
1 GTGCCTGATATACGACACAAAAA
99682589 GTGCCTGAT
1 GTGCCTGAT
99682598 CGGCAAAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (23 bp):
GTGCCTGATATACGACACAAAAA
Found at i:99685215 original size:2 final size:2
Alignment explanation
Indices: 99685208--99685237 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
99685198 ATAATGGATG
99685208 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
99685238 TTCCACACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:99695077 original size:28 final size:28
Alignment explanation
Indices: 99695041--99695117 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
99695031 TTAATACTCA
*
99695041 ATATTTCGCACACTAAGTGCCATACTTG
1 ATATCTCGCACACTAAGTGCCATACTTG
*
99695069 ATATCTCGCACACCAAGTGCCATACTTG
1 ATATCTCGCACACTAAGTGCCATACTTG
*
99695097 ATATCTTGCACACTAAGTGCC
1 ATATCTCGCACACTAAGTGCC
99695118 GTACATAGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
ATATCTCGCACACTAAGTGCCATACTTG
Found at i:99695201 original size:41 final size:40
Alignment explanation
Indices: 99695104--99695239 Score: 186
Period size: 40 Copynumber: 3.4 Consensus size: 40
99695094 TTGATATCTT
* * *
99695104 GCACACTAAGTGCCGTACATAGCTGAAGCTATCTCAAATT-
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTC-AATTC
*
99695144 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCATTCTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAT-TC
*
99695185 GCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA-TC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTC-AATTC
99695225 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
99695240 CAAATAATCG
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.02
40 50 0.57
41 34 0.39
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTCAATTC
Found at i:99700742 original size:18 final size:19
Alignment explanation
Indices: 99700719--99700808 Score: 152
Period size: 18 Copynumber: 4.9 Consensus size: 19
99700709 ATAATCTTCA
99700719 ATGATATGCAAT-TTAGAT
1 ATGATATGCAATCTTAGAT
99700737 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99700756 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99700773 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99700791 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
99700809 AGATATGATT
Statistics
Matches: 68, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.24
18 28 0.41
19 24 0.35
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:99700750 original size:35 final size:36
Alignment explanation
Indices: 99700711--99700815 Score: 123
Period size: 35 Copynumber: 3.0 Consensus size: 36
99700701 ATGGAAATAT
99700711 AATCTTCA-ATGATATGCAAT-TTAGATATGATATGC
1 AATCTT-AGATGATATGCAATCTTAGATATGATATGC
*
99700746 AATCTTAGAT-ATGATACAATCTTAGATATGAT-TGC
1 AATCTTAGATGAT-ATGCAATCTTAGATATGATATGC
99700781 AATCTTAGATATGATATGCAATCTTAGA-A-GATATG
1 AATCTTAG--ATGATATGCAATCTTAGATATGATATG
99700816 ATTTTGTAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
34 3 0.05
35 28 0.46
36 14 0.23
37 14 0.23
38 2 0.03
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTAGATGATATGCAATCTTAGATATGATATGC
Found at i:99700834 original size:22 final size:22
Alignment explanation
Indices: 99700719--99700831 Score: 87
Period size: 18 Copynumber: 5.8 Consensus size: 22
99700709 ATAATCTTCA
99700719 ATGATATGCAAT-TT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99700737 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99700756 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99700773 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99700791 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
99700813 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
99700832 GATTTAATTT
Statistics
Matches: 85, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
17 16 0.19
18 28 0.33
19 21 0.25
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:99701119 original size:17 final size:18
Alignment explanation
Indices: 99701097--99701130 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
99701087 TTTCCCTGAT
*
99701097 TTTTTTATAT-ATTTTAA
1 TTTTTTAAATAATTTTAA
99701114 TTTTTTAAATAATTTTA
1 TTTTTTAAATAATTTTA
99701131 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTAAATAATTTTAA
Found at i:99709838 original size:78 final size:78
Alignment explanation
Indices: 99709728--99710179 Score: 563
Period size: 78 Copynumber: 5.6 Consensus size: 78
99709718 CGAAGAAACA
** * * * *
99709728 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAGTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
99709793 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
99709806 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAACATG-T-TGGACCTTCATTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACA-GATCT-GACCTTCATTG
*
99709869 AAGCAGATCTAAGAT
64 AAGCAGATCCAAGAT
* ***
99709884 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACGTGGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
99709949 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
99709962 GATTTGGCATCTCTGTATTAGACGGGGAACAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
99710027 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
99710040 GATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATGTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCA----
99710104 TTTACATCGAAGCAGATCCAAGAT
61 --T---T-GAAGCAGATCCAAGAT
* *
99710128 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGAT
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
99710180 TTGGCATCTC
Statistics
Matches: 329, Mismatches: 26, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
77 3 0.01
78 261 0.79
79 2 0.01
84 1 0.00
87 1 0.00
88 16 0.05
90 11 0.03
92 34 0.10
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:99710178 original size:45 final size:45
Alignment explanation
Indices: 99710040--99710263 Score: 213
Period size: 45 Copynumber: 4.9 Consensus size: 45
99710030 GATCCAAGAT
* *
99710040 GATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACA
* * * * * * *
99710087 GA-TTGG-ACCTTCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATC-TC-TGT-ATTAGA-CGGGGAGCAAATCGAAGATAACA
*
99710132 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * *
99710177 GATTTGGCATCTCTGTATTACACGGGGAACAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * * *
99710222 GATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATA
99710264 GTAGATATCA
Statistics
Matches: 146, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 105 0.72
46 12 0.08
47 19 0.13
48 4 0.03
49 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
Found at i:99710227 original size:90 final size:91
Alignment explanation
Indices: 99710024--99710252 Score: 253
Period size: 90 Copynumber: 2.6 Consensus size: 91
99710014 GACCTTCATT
* *
99710024 GAAGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGACTGGGAGCAGATCGAAGACATAA
1 GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG-AGACATAA
*
99710085 CAGATTGGACCTTCATGTGTTTACATC
65 CAGATTGGACCTTCATGTGATTACATC
* *
99710112 GAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG-GAGATAAC
1 GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAGACATAAC
*
99710176 AGATTTGG-CATCTC-TGT-ATTACA-C
66 AGA-TTGGACCT-TCATGTGATTACATC
* * *
99710200 GGGGAA-CAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGATGGGGAGCA
1 ---GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCA
99710253 GATCAAAGAT
Statistics
Matches: 123, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
88 17 0.14
89 5 0.04
90 58 0.47
91 9 0.07
92 34 0.28
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (91 bp):
GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAGACATAAC
AGATTGGACCTTCATGTGATTACATC
Found at i:99710674 original size:17 final size:19
Alignment explanation
Indices: 99710577--99710667 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
99710567 ATGATATACA
99710577 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
99710596 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99710615 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99710632 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
99710650 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
99710668 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:99710693 original size:22 final size:22
Alignment explanation
Indices: 99710577--99710690 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
99710567 ATGATATACA
99710577 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
99710596 ATGATATACAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99710615 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99710632 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
99710650 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
99710672 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
99710691 GATTTAATTT
Statistics
Matches: 85, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 33 0.39
22 8 0.09
23 12 0.14
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:99715134 original size:29 final size:29
Alignment explanation
Indices: 99715092--99715148 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
99715082 CCATTTAACT
*
99715092 CTTTTTTCTTTTTGGTTACATGAACCAAA
1 CTTTTTTCCTTTTGGTTACATGAACCAAA
99715121 CTTTTTTCCTTTTGGTTACATGAACCAA
1 CTTTTTTCCTTTTGGTTACATGAACCAA
99715149 TTAATTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (29 bp):
CTTTTTTCCTTTTGGTTACATGAACCAAA
Found at i:99723176 original size:21 final size:20
Alignment explanation
Indices: 99723151--99723215 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
99723141 CTCTCTTAAC
99723151 AAAAATTAAAAAATAATTTTA
1 AAAAATT-AAAAATAATTTTA
* *
99723172 AAAAATTCAAAATAATTTTT
1 AAAAATTAAAAATAATTTTA
* *
99723192 TAAAATTTAAAAT-ATTTATA
1 AAAAATTAAAAATAATTT-TA
99723212 AAAA
1 AAAA
99723216 TCCCAAATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
19 4 0.11
20 26 0.70
21 7 0.19
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATTAAAAATAATTTTA
Found at i:99723279 original size:19 final size:19
Alignment explanation
Indices: 99723236--99723272 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
99723226 ATATTTTTTA
*
99723236 AAAAAATTATAAAAATTTC
1 AAAAAATTATAAAAATATC
*
99723255 AAAAAATTCTAAAAATAT
1 AAAAAATTATAAAAATAT
99723273 ATAAAAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAAAATTATAAAAATATC
Found at i:99724051 original size:26 final size:26
Alignment explanation
Indices: 99724015--99724098 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
99724005 TGATACAAAT
99724015 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
99724041 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
99724067 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
99724093 TGATAA
1 TGATAA
99724099 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:99727663 original size:23 final size:24
Alignment explanation
Indices: 99727637--99727691 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
99727627 GTACTTTGCA
*
99727637 TATATATATATATAT-ATATATAT
1 TATATATATACATATCATATATAT
*
99727660 TATATATA-ACATATCGTATATAT
1 TATATATATACATATCATATATAT
99727683 TATAT-TATA
1 TATATATATA
99727692 ATACACTCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (24 bp):
TATATATATACATATCATATATAT
Found at i:99727682 original size:2 final size:2
Alignment explanation
Indices: 99727636--99727667 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
99727626 CGTACTTTGC
99727636 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
99727668 ACATATCGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99729328 original size:22 final size:21
Alignment explanation
Indices: 99729303--99729353 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
99729293 CCCTAAATTA
99729303 TAAAACTTAAAACTATAAACCC
1 TAAAAC-TAAAACTATAAACCC
* * *
99729325 TAAATCTAAAACCATAAAACC
1 TAAAACTAAAACTATAAACCC
*
99729346 TTAAACTA
1 TAAAACTA
99729354 TAGACAACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.55, C:0.22, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAAACTAAAACTATAAACCC
Found at i:99729442 original size:14 final size:14
Alignment explanation
Indices: 99729423--99729459 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
99729413 TAAATAATAT
99729423 ATATATATATATGG
1 ATATATATATATGG
*
99729437 ATATATATATATTG
1 ATATATATATATGG
99729451 ATATATATA
1 ATATATATA
99729460 GATATTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (14 bp):
ATATATATATATGG
Found at i:99729465 original size:16 final size:15
Alignment explanation
Indices: 99729421--99729465 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
99729411 AATAAATAAT
*
99729421 ATATATATATATATGG
1 ATATATATA-ATATTG
99729437 ATATATAT-ATATTG
1 ATATATATAATATTG
99729451 ATATATATAGATATT
1 ATATATATA-ATATT
99729466 AATGTAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 13 0.50
16 13 0.50
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (15 bp):
ATATATATAATATTG
Found at i:99729730 original size:3 final size:3
Alignment explanation
Indices: 99729722--99729753 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
99729712 ATTAATAGGA
99729722 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
99729754 AAGAGAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:99733948 original size:274 final size:277
Alignment explanation
Indices: 99733276--99735531 Score: 3772
Period size: 289 Copynumber: 8.0 Consensus size: 277
99733266 CTAACCTTAT
*
99733276 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
*
99733341 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99733406 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
99733471 TCCAATTTACTTATAAAAATTAAACTACGATT-TTTTTTATATTATTATATTTAAATTACTATTT
184 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
99733535 TTTTATATTAATAATGTTTGATTTTAATA
249 TTTTATATTAATAATGTTTGATTTTAATA
99733564 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
99733629 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
99733694 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
99733756 ATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAAT
196 ATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAAT
99733821 AATGTTTGATTTTAATA
261 AATGTTTGATTTTAATA
*
99733838 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
*
99733903 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99733968 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
99734033 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
184 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
99734098 TTTTATATTAATAATGTTTGATTTTAATA
249 TTTTATATTAATAATGTTTGATTTTAATA
*
99734127 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGATGGGTTGCCTTATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
99734192 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
99734257 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
99734319 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTA-TTTTTTATATTAA
196 ATAAAAATTAAACTACGATTC-TTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAA
99734383 TAATGTTTGATTTTAATA
260 TAATGTTTGATTTTAATA
*
99734401 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAATCCTGACGGGTTGCCTCATATCGAGT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAA-CCTGACGGGTTGCCTTATATCGAGT
99734466 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCA
65 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCA
99734531 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTAT
130 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTAT
99734596 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATT
183 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATT
99734661 TTTTTATATTAATAATGTTTGATTTTAATA
248 TTTTTATATTAATAATGTTTGATTTTAATA
99734691 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
99734756 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
99734821 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
99734883 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTA-TTTTTTATATTAA
196 ATAAAAATTAAACTACGATTC-TTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAA
*
99734947 TAATGTTTAATTTTAATA
260 TAATGTTTGATTTTAATA
*
99734965 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTCATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
99735029 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99735094 AAAGACTTGAAAAAAGTTCTATCGAGCTCA-TTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
99735155 ATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAAT
196 ATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAAT
99735220 AATGTTTGATTTTAATA
261 AATGTTTGATTTTAATA
* *
99735237 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
99735302 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
99735367 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
* *
99735432 TCCAATTTACTTATAAAAATTAAACTACGATTCATTTTTGATATTATTATATTCAAATTACTATT
184 TCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTTATATTATTATATTTAAATTACTATT
*
99735497 TTTTTATATTAATAATGTTTTATTTTAATA
248 TTTTTATATTAATAATGTTTGATTTTAATA
99735527 TTTAA
1 TTTAA
99735532 TATTTTTAAA
Statistics
Matches: 1888, Mismatches: 26, Indels: 106
0.93 0.01 0.05
Matches are distributed among these distances:
271 29 0.02
272 117 0.06
273 284 0.15
274 451 0.24
275 181 0.10
276 1 0.00
277 5 0.00
278 6 0.00
285 6 0.00
286 5 0.00
287 1 0.00
288 162 0.09
289 463 0.25
290 177 0.09
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (277 bp):
TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
ATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAAT
AATGTTTGATTTTAATA
Found at i:99734733 original size:564 final size:564
Alignment explanation
Indices: 99733276--99735531 Score: 4077
Period size: 564 Copynumber: 4.0 Consensus size: 564
99733266 CTAACCTTAT
*
99733276 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTCATATCGAGCT
*
99733341 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99733406 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
99733471 TCCAATTTACTTATAAAAATTAAACTACGATT-TTTTTTATATTATTATATTTAAATTACTATTT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
99733535 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
261 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
99733600 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
326 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
99733665 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
391 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
99733730 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTTATATTATTATA
456 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
99733794 TTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
521 TTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
*
99733838 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTCATATCGAGCT
*
99733903 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99733968 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
99734033 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
99734098 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
261 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
*
99734163 AAACCTGATGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
326 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
99734228 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
391 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
99734293 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
456 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
99734358 TTTAAATTACTA-TTTTTTATATTAATAATGTTTGATTTTAATA
521 TTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
*
99734401 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAATCCTGACGGGTTGCCTCATATCGAGT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAA-CCTGACGGGTTGCCTCATATCGAGC
99734466 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCA
65 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCA
99734531 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTAT
130 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTAT
99734596 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATT
195 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATT
99734661 TTTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTG
260 TTTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTG
99734726 GAAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAAC
325 GAAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAAC
99734791 GCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC
390 GCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC
99734856 TATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTAT
455 TATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTAT
*
99734921 ATTTAAATTACTA-TTTTTTATATTAATAATGTTTAATTTTAATA
520 ATTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
*
99734965 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG-AACCTGACGGGTTGCCTCATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTCATATCGAGCT
99735029 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
99735094 AAAGACTTGAAAAAAGTTCTATCGAGCTCA-TTAC-----------TAT-T---CTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
99735143 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
*
99735208 TTTTATATTAATAATGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGG
261 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
*
99735273 AAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
326 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
* *
99735338 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAATTCTATCGAGCTCATTTACT
391 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-
*
99735403 ATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCATT
455 ----------TAT-T---CTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTT
* * *
99735468 TTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAATA
506 TTTTATATTATTATATTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
99735527 TTTAA
1 TTTAA
99735532 TATTTTTAAA
Statistics
Matches: 1661, Mismatches: 14, Indels: 38
0.97 0.01 0.02
Matches are distributed among these distances:
546 266 0.16
549 1 0.00
550 3 0.00
557 3 0.00
558 1 0.00
561 75 0.05
562 383 0.23
563 345 0.21
564 584 0.35
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (564 bp):
TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTCATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTTAAATTACTATTT
TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
TTTAAATTACTATTTTTTTATATTAATAATGTTTGATTTTAATA
Found at i:99735856 original size:24 final size:24
Alignment explanation
Indices: 99735829--99735896 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
99735819 ATTATTATTG
*
99735829 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
99735853 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
99735877 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
99735897 CCGTTTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:99736229 original size:9 final size:9
Alignment explanation
Indices: 99736217--99736451 Score: 152
Period size: 9 Copynumber: 25.6 Consensus size: 9
99736207 TATTTGATAT
*
99736217 CATAATTTA
1 CATAACTTA
99736226 CATAACTTA
1 CATAACTTA
* *
99736235 TATAACATA
1 CATAACTTA
*
99736244 TATAACTTA
1 CATAACTTA
99736253 CATAACTTA
1 CATAACTTA
* *
99736262 TATAACATA
1 CATAACTTA
99736271 CATAACTTA
1 CATAACTTA
* *
99736280 TATAACATA
1 CATAACTTA
99736289 CATAACTTA
1 CATAACTTA
*
99736298 TATAACTTA
1 CATAACTTA
*
99736307 TATAACTTA
1 CATAACTTA
* *
99736316 GATAA-ATA
1 CATAACTTA
*
99736324 TATAACTTA
1 CATAACTTA
99736333 CATAACTTA
1 CATAACTTA
99736342 CATAATACTTA
1 CAT-A-ACTTA
* *
99736353 AATATATTTTATA
1 CATA-A--CT-TA
*
99736366 TCATAATTTA
1 -CATAACTTA
99736376 CATAACTTA
1 CATAACTTA
99736385 CATAACTTA
1 CATAACTTA
* *
99736394 GATAA-ATA
1 CATAACTTA
* *
99736402 TATAATTTA
1 CATAACTTA
*
99736411 CATAA-ATA
1 CATAACTTA
* * *
99736419 TATATCATA
1 CATAACTTA
*
99736428 TCATAAATTA
1 -CATAACTTA
99736438 CATAACTTA
1 CATAACTTA
99736447 CATAA
1 CATAA
99736452 TACTTAAATA
Statistics
Matches: 180, Mismatches: 36, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
8 17 0.09
9 136 0.76
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:99736248 original size:27 final size:27
Alignment explanation
Indices: 99736213--99736346 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
99736203 AATATATTTG
* *
99736213 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACTTACATAAC
*
99736241 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACTTACATAAC
* * *
99736268 ATACATAACTTATATAACATACATAAC
1 ATATATAACTTACATAACTTACATAAC
* * *
99736295 TTATATAACTTATATAACTTAGATAA-
1 ATATATAACTTACATAACTTACATAAC
99736321 ATATATAACTTACATAACTTACATAA
1 ATATATAACTTACATAACTTACATAA
99736347 TACTTAAATA
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 23 0.24
27 67 0.71
28 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.37
Consensus pattern (27 bp):
ATATATAACTTACATAACTTACATAAC
Found at i:99736390 original size:105 final size:105
Alignment explanation
Indices: 99736269--99736475 Score: 274
Period size: 105 Copynumber: 2.0 Consensus size: 105
99736259 TTATATAACA
* * * * *
99736269 TACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-ATAACTT
1 TACATAACTTACATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCATAAATT
* *
99736332 ACATAACTTACATAATACTTAAATATATTTTATATCATAATT
64 ACATAACTTACATAATACTTAAATATATATCATATCATAATT
* * * * *
99736374 TACATAACTTACATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATAAATTAC
1 TACATAACTTACATAACATACATAAATATATAACTTACATAAATAGATATAATATCATAAATTAC
99736439 ATAACTTACATAATACTTAAATATATATCATATCATA
66 ATAACTTACATAATACTTAAATATATATCATATCATA
99736476 CATAACTAGT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
103 5 0.06
104 18 0.20
105 65 0.74
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (105 bp):
TACATAACTTACATAACATACATAAATATATAACTTACATAAATAGATATAATATCATAAATTAC
ATAACTTACATAATACTTAAATATATATCATATCATAATT
Found at i:99736415 original size:17 final size:17
Alignment explanation
Indices: 99736363--99736422 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
99736353 AATATATTTT
99736363 ATATCATAATTTACATAA
1 ATAT-ATAATTTACATAA
* * * *
99736381 CTTACATAACTTAGATAA
1 -ATATATAATTTACATAA
99736399 ATATATAATTTACATAA
1 ATATATAATTTACATAA
99736416 ATATATA
1 ATATATA
99736423 TCATATCATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 20 0.61
18 11 0.33
19 2 0.06
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATATAATTTACATAA
Found at i:99736512 original size:105 final size:102
Alignment explanation
Indices: 99736321--99736525 Score: 234
Period size: 105 Copynumber: 2.0 Consensus size: 102
99736311 ACTTAGATAA
* * * *
99736321 ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTAC
1 ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
* * *
99736386 ATAACTTAGATAAATATATAATTTACATAAATATATATC
66 AAAACTTACATAAATACATAA--TACATAAATATATATC
**
99736425 ATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACA-TAAC-TAGTTT
1 ATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATATCATA-ATTAACATAACTT
* * * *
99736488 ACAAAATTTACTTAACTTACATAATACATAAATCTATA
64 ACAAAACTTACATAA-ATACATAATACATAAATATATA
99736526 GTCGAAAATC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
103 13 0.15
104 19 0.22
105 52 0.61
106 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (102 bp):
ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
AAAACTTACATAAATACATAATACATAAATATATATC
Found at i:99742444 original size:31 final size:31
Alignment explanation
Indices: 99742398--99742464 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
99742388 TGGTTGTATT
* *
99742398 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
99742429 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
99742460 TTTTA
1 TTTTA
99742465 ATGCAGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:99742564 original size:43 final size:42
Alignment explanation
Indices: 99742515--99742784 Score: 371
Period size: 43 Copynumber: 6.3 Consensus size: 42
99742505 ATCTGCCAAA
* *
99742515 TTTAGCGGCGTTTGT-AAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTT-TCACACAAA-CGCCGCTAAAAGCCTTGACC
* *
99742558 TTTAGCGGCGCTTTCACACAAATGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTCACACAAACGCCGCTAAAAGCCTTGACC
*
99742600 TTTAGCGGCGCTTTCACACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTTCACACAAACGCCGCTAAAAGCCTTGACC
* *
99742642 TTTAGCGGCGTTTTCCCACAAACGCCGCTAAAAAGCCTTTACC
1 TTTAGCGGCGTTTTCACACAAACGCCGCT-AAAAGCCTTGACC
* * * * *
99742685 TTTAGCGGCGCTTGTCCCACAAACACCGCTAAAAGGCTGGACC
1 TTTAGCGGCG-TTTTCACACAAACGCCGCTAAAAGCCTTGACC
*
99742728 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTTCACACAAACGCCGCTAAAAGCCTTGACC
99742771 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
99742785 TTTCCAACAA
Statistics
Matches: 207, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
42 92 0.44
43 98 0.47
44 17 0.08
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (42 bp):
TTTAGCGGCGTTTTCACACAAACGCCGCTAAAAGCCTTGACC
Found at i:99742590 original size:42 final size:42
Alignment explanation
Indices: 99742538--99742780 Score: 387
Period size: 42 Copynumber: 5.7 Consensus size: 42
99742528 GTAAAAAAAG
*
99742538 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCACACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCACAAA
* *
99742580 TGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCACACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCACAAA
*
99742622 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCACAAA
*
99742664 CGCCGCTAAAAAGCCTTTACCTTTAGCGGCGCTTGTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTT-TCCCACAAA
* * *
99742708 CACCGCTAAAAGGCTGGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGC-TTTCCCACAAA
99742751 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG
99742781 TTTTTTTCCA
Statistics
Matches: 185, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
42 87 0.47
43 81 0.44
44 17 0.09
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (42 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCACAAA
Found at i:99754326 original size:6 final size:6
Alignment explanation
Indices: 99754318--99754361 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
99754308 TTTAATTTTT
* * * *
99754318 TTAGGT TTAGGC TTAGGG TTAGGG TTAGAG TTAGGA TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TT
99754362 TTATTAGTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.20, C:0.02, G:0.39, T:0.39
Consensus pattern (6 bp):
TTAGGG
Found at i:99760999 original size:46 final size:44
Alignment explanation
Indices: 99760940--99761054 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
99760930 ACAGGACAGA
* *
99760940 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
99760986 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
99761030 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
99761055 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:99761035 original size:44 final size:45
Alignment explanation
Indices: 99760940--99761073 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
99760930 ACAGGACAGA
* *
99760940 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
99760986 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
99761030 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
99761074 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:99767263 original size:24 final size:24
Alignment explanation
Indices: 99767228--99767285 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
99767218 ATCCTCATCT
*
99767228 TCTTCGTCTTCACCTCAACCCTCA
1 TCTTCATCTTCACCTCAACCCTCA
* * *
99767252 TAC-TCATCTTCATCTCCACCTTCA
1 T-CTTCATCTTCACCTCAACCCTCA
99767276 TCTTCATCTT
1 TCTTCATCTT
99767286 TATCTTCATC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.04
24 26 0.93
25 1 0.04
ACGTcount: A:0.17, C:0.41, G:0.02, T:0.40
Consensus pattern (24 bp):
TCTTCATCTTCACCTCAACCCTCA
Found at i:99767264 original size:6 final size:6
Alignment explanation
Indices: 99767255--99767296 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
99767245 ACCCTCATAC
* * *
99767255 TCATCT TCATCT CCACCT TCATCT TCATCT TTATCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
99767297 CCACTCCTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.36, G:0.00, T:0.48
Consensus pattern (6 bp):
TCATCT
Found at i:99769253 original size:10 final size:10
Alignment explanation
Indices: 99769238--99769262 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
99769228 ATCGGCAAAA
99769238 TAAAATATTT
1 TAAAATATTT
99769248 TAAAATATTT
1 TAAAATATTT
99769258 TAAAA
1 TAAAA
99769263 ATTAAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAAATATTT
Found at i:99772687 original size:1 final size:1
Alignment explanation
Indices: 99772683--99772708 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
99772673 TGATTGAAGC
99772683 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
99772709 CAAATCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:99772702 original size:32 final size:32
Alignment explanation
Indices: 99772639--99772702 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
99772629 ATTTCTCATG
* ** * *
99772639 CTTGATTGAAGCCAAAACTAAATAAATAAAAA
1 CTTGATTGAAGCAAAAAAAAAAAAAAAAAAAA
99772671 CTTGATTGAAGCAAAAAAAAAAAAAAAAAAAA
1 CTTGATTGAAGCAAAAAAAAAAAAAAAAAAAA
99772703 AAAAAACAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.17
Consensus pattern (32 bp):
CTTGATTGAAGCAAAAAAAAAAAAAAAAAAAA
Found at i:99775182 original size:56 final size:55
Alignment explanation
Indices: 99775122--99775227 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 55
99775112 TTTTTGAGAT
* * * *
99775122 TAATGAGATTTTTTAAAAATGTTAAGAGTGTTTAATT-ATTTTTTTTTAAAAAGGTA
1 TAATGAGAATTTTCAAAAAT-TTAAG-GGGTTTAATTAATTTTCTTTTAAAAAGGTA
*
99775178 TAATGAGAATTTTCAAAAATTTGAGGGGTTTAATTAAATTTTCTTTTAAA
1 TAATGAGAATTTTCAAAAATTTAAGGGGTTTAATT-AATTTTCTTTTAAA
99775228 GCTTAAAGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
54 9 0.21
55 4 0.09
56 30 0.70
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (55 bp):
TAATGAGAATTTTCAAAAATTTAAGGGGTTTAATTAATTTTCTTTTAAAAAGGTA
Found at i:99775262 original size:12 final size:12
Alignment explanation
Indices: 99775245--99775273 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
99775235 GGGAGAAATG
99775245 AAATTTTTCAAA
1 AAATTTTTCAAA
99775257 AAA-TTTTCAAA
1 AAATTTTTCAAA
99775268 AAATTT
1 AAATTT
99775274 GGGTACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
AAATTTTTCAAA
Done.