Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 337 of 345
Found at i:100630537 original size:14 final size:14
Alignment explanation
Indices: 100630518--100630551 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
100630508 TTAAATTATG
100630518 TTAAAAATAAAAAT
1 TTAAAAATAAAAAT
* *
100630532 TTAAAATTTAAAAT
1 TTAAAAATAAAAAT
100630546 TTAAAA
1 TTAAAA
100630552 TTTAAACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAAAAATAAAAAT
Found at i:100630544 original size:21 final size:21
Alignment explanation
Indices: 100630518--100630557 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
100630508 TTAAATTATG
100630518 TTAAAAATAAAAATTTAAAAT
1 TTAAAAATAAAAATTTAAAAT
* *
100630539 TTAAAATTTAAAATTTAAA
1 TTAAAAATAAAAATTTAAA
100630558 CATAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAAATAAAAATTTAAAAT
Found at i:100630925 original size:23 final size:21
Alignment explanation
Indices: 100630872--100630925 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
100630862 AAAACGATAT
100630872 TTAAACATATAAATACATTAAA
1 TTAAA-ATATAAATACATTAAA
* *
100630894 TAAATAATATTAAATGCATTACAA
1 TTAA-AATA-TAAATACATTA-AA
100630918 TTAAAATA
1 TTAAAATA
100630926 AAGATTTAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 6 0.23
23 15 0.58
24 5 0.19
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAATATAAATACATTAAA
Found at i:100631285 original size:17 final size:18
Alignment explanation
Indices: 100631257--100631292 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
100631247 AAAATACTTA
100631257 ATAAATAATATAAAAATT
1 ATAAATAATATAAAAATT
*
100631275 ATAAA-AATATAATAATT
1 ATAAATAATATAAAAATT
100631292 A
1 A
100631293 AATTTGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAAATAATATAAAAATT
Found at i:100643450 original size:63 final size:63
Alignment explanation
Indices: 100643349--100643501 Score: 218
Period size: 63 Copynumber: 2.4 Consensus size: 63
100643339 AATTAAAGTC
* * * * *
100643349 ACACGGGCATGTGTCTAGGCCATGTAACTCACTGTTTGTGAATTAGAGTCACATGGG-CTAGG
1 ACACGGGCGTGTGTCTAGGCCGTGTAACTCACTATTTGTGAATTAGAGTCACATGGGCCAAAG
* *
100643411 AACACGGACGTGTGTCTAAGCCGTGTAACTCACTATTTGTGAATTAGAGTCACATGGGCCAAAG
1 -ACACGGGCGTGTGTCTAGGCCGTGTAACTCACTATTTGTGAATTAGAGTCACATGGGCCAAAG
*
100643475 ACACGGGCGTGTGTCCAGGCCGTGTAA
1 ACACGGGCGTGTGTCTAGGCCGTGTAA
100643502 GAGATATTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
63 76 0.96
64 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (63 bp):
ACACGGGCGTGTGTCTAGGCCGTGTAACTCACTATTTGTGAATTAGAGTCACATGGGCCAAAG
Found at i:100645169 original size:3 final size:3
Alignment explanation
Indices: 100645161--100645494 Score: 124
Period size: 3 Copynumber: 111.3 Consensus size: 3
100645151 TATTTATTGA
100645161 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** ** ** **
100645208 T-T TTT TTT TGC TAT TGC TAT TGC TAT TGC TAT TAT TA- TAT T-T T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
100645252 TTT TAT TTT CTAT TAC TAT CAT T-T CTAT TAT TAA TCT TCT CAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * * * *
100645298 TAC CAT TAT TAT TTT TAT TATT TAC TAC TAT TATT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT
** * * * * * * *
100645345 TAT TAT GGT TAT TCT CAT TAT CTTT TTT TAC TAT TCT TAG TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * ***
100645391 T-T TAT ATAT TAT TAT TAT CAT TAT TAT TTT TAT TAT TTT TAC CGC
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
100645436 TAA TATT TAT TGT CAT TAT TGT TAT TAT TAC TAT TAT TAT TAT TGT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
100645482 TAT CAT CAT TAT T
1 TAT TAT TAT TAT T
100645495 TTTGTAATTA
Statistics
Matches: 239, Mismatches: 80, Indels: 24
0.70 0.23 0.07
Matches are distributed among these distances:
2 13 0.05
3 210 0.88
4 16 0.07
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:100645265 original size:37 final size:39
Alignment explanation
Indices: 100645197--100645270 Score: 91
Period size: 41 Copynumber: 1.9 Consensus size: 39
100645187 TTATTATTAT
* *
100645197 TATTATTATTTTTTTTTTTTGCTATTGCTATTGCTATTGC
1 TATTATTATTTTTTTTTTAT-CTATTGCTATTACTATTGC
100645237 TATTATTATATTTTTTTTTAT-T-TT-CTATTACTAT
1 TATTATTAT-TTTTTTTTTATCTATTGCTATTACTAT
100645271 CATTTCTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 9 0.29
38 2 0.06
39 1 0.03
40 9 0.29
41 10 0.32
ACGTcount: A:0.19, C:0.08, G:0.05, T:0.68
Consensus pattern (39 bp):
TATTATTATTTTTTTTTTATCTATTGCTATTACTATTGC
Found at i:100645593 original size:17 final size:17
Alignment explanation
Indices: 100645567--100645612 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
100645557 TTATTACTCC
100645567 TCTATTATATTTC-TTA
1 TCTATTATATTTCATTA
100645583 TCTATTTATATTTTCATTA
1 TCTA-TTATA-TTTCATTA
100645602 T-TATTATATTT
1 TCTATTATATTT
100645613 AGGTGCTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 7 0.26
17 10 0.37
18 6 0.22
19 4 0.15
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TCTATTATATTTCATTA
Found at i:100648896 original size:26 final size:26
Alignment explanation
Indices: 100648850--100648902 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
100648840 TCAAACATGC
*
100648850 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
100648876 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
100648902 A
1 A
100648903 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:100650415 original size:26 final size:26
Alignment explanation
Indices: 100650385--100650466 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
100650375 TGAAATGCCC
*
100650385 ATCATGGAACATTTACCTTACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
100650411 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
100650437 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
100650463 ATCA
1 ATCA
100650467 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:100652385 original size:3 final size:3
Alignment explanation
Indices: 100652377--100652401 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
100652367 ATTTTTAAAC
100652377 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
100652402 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:100652928 original size:18 final size:18
Alignment explanation
Indices: 100652876--100652930 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
100652866 GTTTTAGATT
*
100652876 TTATTATT-ATATTATTA
1 TTATTATTCATATCATTA
* * *
100652893 TTTTTAATCATATGATTA
1 TTATTATTCATATCATTA
*
100652911 TTATTATTCTTATCATTA
1 TTATTATTCATATCATTA
100652929 TT
1 TT
100652931 GTTGTTGTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 6 0.20
18 24 0.80
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (18 bp):
TTATTATTCATATCATTA
Found at i:100655874 original size:16 final size:15
Alignment explanation
Indices: 100655839--100655874 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
100655829 GAAAATCAAG
*
100655839 ATTTTTACGACATTC
1 ATTTTTACAACATTC
*
100655854 ATTTTTACAATATTC
1 ATTTTTACAACATTC
100655869 ATTTTT
1 ATTTTT
100655875 CTTTAGTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.14, G:0.03, T:0.56
Consensus pattern (15 bp):
ATTTTTACAACATTC
Found at i:100656799 original size:106 final size:106
Alignment explanation
Indices: 100656614--100656823 Score: 402
Period size: 106 Copynumber: 2.0 Consensus size: 106
100656604 AAATGTAAAA
*
100656614 TAAATAAAAGTTATGGATTGCTAGAGACCATAGGAAGGTTCGGCTAAGGCATGGTTTTGATGAAT
1 TAAATAAAAGTTATGGATTGCTAGAAACCATAGGAAGGTTCGGCTAAGGCATGGTTTTGATGAAT
100656679 TTTGTGTATTTTGTGATTTTATGAAATAGGGACTAAAGTGT
66 TTTGTGTATTTTGTGATTTTATGAAATAGGGACTAAAGTGT
*
100656720 TAAATAAAAGTTATGGGTTGCTAGAAACCATAGGAAGGTTCGGCTAAGGCATGGTTTTGATGAAT
1 TAAATAAAAGTTATGGATTGCTAGAAACCATAGGAAGGTTCGGCTAAGGCATGGTTTTGATGAAT
100656785 TTTGTGTATTTTGTGATTTTATGAAATAGGGACTAAAGT
66 TTTGTGTATTTTGTGATTTTATGAAATAGGGACTAAAGT
100656824 TGGAAAATGT
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (106 bp):
TAAATAAAAGTTATGGATTGCTAGAAACCATAGGAAGGTTCGGCTAAGGCATGGTTTTGATGAAT
TTTGTGTATTTTGTGATTTTATGAAATAGGGACTAAAGTGT
Found at i:100657188 original size:40 final size:40
Alignment explanation
Indices: 100657124--100657235 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
100657114 ATTATGTTCG
* *
100657124 GCACTAGGTGTGCGATTTGAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATA
* ** *
100657164 GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATGTG
1 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATA
* * *
100657204 GCACTAAGTGTGCAGTATTGAGATAGTTTCGG
1 GCACTAAGTGTGC-GAATTGAAATAGCTTCGG
100657236 TTTAATATGA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 47 0.77
41 14 0.23
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATA
Found at i:100658020 original size:10 final size:10
Alignment explanation
Indices: 100657980--100658026 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
100657970 TTATGGAATA
*
100657980 TATGTTTTGG
1 TATGATTTGG
100657990 TATGATTTTGG
1 TATGA-TTTGG
*
100658001 TTTAGATTTGG
1 TAT-GATTTGG
100658012 TATGATTTGG
1 TATGATTTGG
100658022 T-TGAT
1 TATGAT
100658027 GAGTTGAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 12 0.38
11 14 0.44
12 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (10 bp):
TATGATTTGG
Found at i:100662345 original size:17 final size:19
Alignment explanation
Indices: 100662313--100662348 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
100662303 TATTTTATTG
100662313 TTATTGTATAACTTTTGTT
1 TTATTGTATAACTTTTGTT
100662332 TTATTGT-TAA-TTTTGTT
1 TTATTGTATAACTTTTGTT
100662349 ACTATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 3 0.18
19 7 0.41
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (19 bp):
TTATTGTATAACTTTTGTT
Found at i:100666328 original size:24 final size:24
Alignment explanation
Indices: 100666296--100666341 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
100666286 GGGCCTGGTC
*
100666296 ACCACCTTGAGCACCTCCAGAAGA
1 ACCACCTTGAGCACCACCAGAAGA
*
100666320 ACCACCTTGGGCACCACCAGAA
1 ACCACCTTGAGCACCACCAGAA
100666342 CCACCAGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.39, G:0.17, T:0.11
Consensus pattern (24 bp):
ACCACCTTGAGCACCACCAGAAGA
Found at i:100666347 original size:24 final size:24
Alignment explanation
Indices: 100666295--100666347 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
100666285 TGGGCCTGGT
* *
100666295 CACCACCTTGAGCACCTCCAGAAG
1 CACCACCTTGAGCACCACCAGAAC
* *
100666319 AACCACCTTGGGCACCACCAGAAC
1 CACCACCTTGAGCACCACCAGAAC
100666343 CACCA
1 CACCA
100666348 GCCATGTGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.43, G:0.15, T:0.09
Consensus pattern (24 bp):
CACCACCTTGAGCACCACCAGAAC
Found at i:100670273 original size:24 final size:24
Alignment explanation
Indices: 100670246--100670298 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
100670236 TAATAATAAT
100670246 TATATTAAAAATTTTATTAAATTA
1 TATATTAAAAATTTTATTAAATTA
*** * *
100670270 TATATTTTTATTTTTATTAAATTG
1 TATATTAAAAATTTTATTAAATTA
100670294 TATAT
1 TATAT
100670299 AATAATAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TATATTAAAAATTTTATTAAATTA
Found at i:100670501 original size:16 final size:16
Alignment explanation
Indices: 100670480--100670534 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
100670470 ATTGAATTAT
100670480 TATTACAGCTCTATTC
1 TATTACAGCTCTATTC
**
100670496 TATTACAATTCTATTC
1 TATTACAGCTCTATTC
*
100670512 AATTACAGCTCTATTC
1 TATTACAGCTCTATTC
*
100670528 CATTACA
1 TATTACA
100670535 ATTCTATTCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.42
Consensus pattern (16 bp):
TATTACAGCTCTATTC
Found at i:100670518 original size:32 final size:32
Alignment explanation
Indices: 100670481--100670543 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
100670471 TTGAATTATT
*
100670481 ATTACAGCTCTATTCTATTACAATTCTATTCA
1 ATTACAGCTCTATTCCATTACAATTCTATTCA
100670513 ATTACAGCTCTATTCCATTACAATTCTATTC
1 ATTACAGCTCTATTCCATTACAATTCTATTC
100670544 CATTCCCCCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.43
Consensus pattern (32 bp):
ATTACAGCTCTATTCCATTACAATTCTATTCA
Found at i:100670540 original size:16 final size:16
Alignment explanation
Indices: 100670489--100670547 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
100670479 TTATTACAGC
*
100670489 TCTATTCTATTACAAT
1 TCTATTCCATTACAAT
* **
100670505 TCTATTCAATTACAGC
1 TCTATTCCATTACAAT
100670521 TCTATTCCATTACAAT
1 TCTATTCCATTACAAT
100670537 TCTATTCCATT
1 TCTATTCCATT
100670548 CCCCCCAACC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.46
Consensus pattern (16 bp):
TCTATTCCATTACAAT
Found at i:100671054 original size:2 final size:2
Alignment explanation
Indices: 100671047--100671087 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
100671037 AGTCAAAATA
100671047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100671088 AAGAGAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:100680968 original size:8 final size:8
Alignment explanation
Indices: 100680935--100680978 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
100680925 ATAAGATATT
100680935 TAATATATA
1 TAATATA-A
*
100680944 TAATATAT
1 TAATATAA
*
100680952 TATTATAA
1 TAATATAA
*
100680960 TAATTTAA
1 TAATATAA
100680968 TAATATAA
1 TAATATAA
100680976 TAA
1 TAA
100680979 AACATAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TAATATAA
Found at i:100681004 original size:16 final size:16
Alignment explanation
Indices: 100680983--100681013 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
100680973 TAATAAAACA
100680983 TAAAATAAAGTAAAAT
1 TAAAATAAAGTAAAAT
100680999 TAAAATAAAGTAAAA
1 TAAAATAAAGTAAAA
100681014 GAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
TAAAATAAAGTAAAAT
Found at i:100684819 original size:16 final size:16
Alignment explanation
Indices: 100684778--100684825 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
100684768 AACATAAAAA
100684778 AATAAAAAATATTTTC
1 AATAAAAAATATTTTC
* *
100684794 --CAAAACATATTTTC
1 AATAAAAAATATTTTC
100684808 AATAAAAAATATTTTC
1 AATAAAAAATATTTTC
100684824 AA
1 AA
100684826 CACGATACTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.46
16 14 0.54
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAAAAAATATTTTC
Found at i:100689496 original size:19 final size:19
Alignment explanation
Indices: 100689474--100689520 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
100689464 AATGGGTTTG
100689474 ATTTTTAATTTTT-TATATT
1 ATTTTTAATTTTTGTAT-TT
*
100689493 ATTTTTTATTTTTGTATTT
1 ATTTTTAATTTTTGTATTT
100689512 A-TTTTAATT
1 ATTTTTAATT
100689521 AAACTAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 15 0.60
20 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
ATTTTTAATTTTTGTATTT
Found at i:100694190 original size:22 final size:23
Alignment explanation
Indices: 100694160--100694204 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
100694150 ATAAAGGAAG
* *
100694160 AAAATAAGAGAAAA-TGAGAAAA
1 AAAAGAAGAGAAAACAGAGAAAA
100694182 AAAAGAAGAGAAAACAGAGAAAA
1 AAAAGAAGAGAAAACAGAGAAAA
100694205 TTAAAACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAAGAAGAGAAAACAGAGAAAA
Found at i:100695251 original size:27 final size:27
Alignment explanation
Indices: 100695213--100695264 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
100695203 TTATGGTGTT
*
100695213 ACAATGAAACACCCTAGTATTCCAAAG
1 ACAATGAAACACCCGAGTATTCCAAAG
*
100695240 ACAATGGAACACCCGAGTATTCCAA
1 ACAATGAAACACCCGAGTATTCCAA
100695265 TGATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.17
Consensus pattern (27 bp):
ACAATGAAACACCCGAGTATTCCAAAG
Found at i:100695308 original size:12 final size:12
Alignment explanation
Indices: 100695291--100695318 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
100695281 AGTTTAGGGA
100695291 TAAAGTGATTCC
1 TAAAGTGATTCC
100695303 TAAAGTGATTCC
1 TAAAGTGATTCC
100695315 TAAA
1 TAAA
100695319 CAACAAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (12 bp):
TAAAGTGATTCC
Found at i:100695859 original size:13 final size:13
Alignment explanation
Indices: 100695841--100695866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100695831 CATTTTCATA
100695841 CAAACAACAACCC
1 CAAACAACAACCC
100695854 CAAACAACAACCC
1 CAAACAACAACCC
100695867 AACACATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.46, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAACAACAACCC
Found at i:100698378 original size:2 final size:2
Alignment explanation
Indices: 100698371--100698403 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
100698361 CTTTACATAC
100698371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100698404 CATAGTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:100708601 original size:16 final size:16
Alignment explanation
Indices: 100708580--100708610 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100708570 GAAAAAGGGG
*
100708580 AAAGAAAGAGAGAAAA
1 AAAGAAAAAGAGAAAA
100708596 AAAGAAAAAGAGAAA
1 AAAGAAAAAGAGAAA
100708611 TTATGGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAGAGAAAA
Found at i:100719446 original size:17 final size:18
Alignment explanation
Indices: 100719403--100719446 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
100719393 CAAAACTACA
*
100719403 AGCTCACC-ATATCTGCG
1 AGCTCACCAAGATCTGCG
100719420 AGCTCACCAAGAT-TGCG
1 AGCTCACCAAGATCTGCG
100719437 AGCTCACCAA
1 AGCTCACCAA
100719447 ACCTATGACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (18 bp):
AGCTCACCAAGATCTGCG
Found at i:100722782 original size:2 final size:2
Alignment explanation
Indices: 100722775--100722813 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
100722765 GGGCAGATTG
* *
100722775 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100722814 GGGAGTTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:100726302 original size:63 final size:63
Alignment explanation
Indices: 100726203--100726328 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
100726193 CATCATGGGG
100726203 AAAGAACAATTCGTAGGAGAAAATTACTAATAATGTACTAATTAATCTCATTTAGCATTATTT
1 AAAGAACAATTCGTAGGAGAAAATTACTAATAATGTACTAATTAATCTCATTTAGCATTATTT
100726266 AAAGAACAATTCGTAGGAGAAAATTACTAATAATGTACTAATTAATCTCATTTAGCATTATTT
1 AAAGAACAATTCGTAGGAGAAAATTACTAATAATGTACTAATTAATCTCATTTAGCATTATTT
100726329 TTTCACAACT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (63 bp):
AAAGAACAATTCGTAGGAGAAAATTACTAATAATGTACTAATTAATCTCATTTAGCATTATTT
Found at i:100727826 original size:19 final size:20
Alignment explanation
Indices: 100727760--100727826 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 20
100727750 CAACGTGCAG
*
100727760 ATATATTATTTATTTCA-TT
1 ATATATTATTTATTTTATTT
* *
100727779 AAATATT-TTTA-TTT-TTC
1 ATATATTATTTATTTTATTT
*
100727796 ATAT-TTACTTATTTTATTT
1 ATATATTATTTATTTTATTT
100727815 ATATATT-TTTAT
1 ATATATTATTTAT
100727827 AAATAAAACA
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
16 2 0.06
17 9 0.25
18 7 0.19
19 16 0.44
20 2 0.06
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (20 bp):
ATATATTATTTATTTTATTT
Found at i:100729143 original size:2 final size:2
Alignment explanation
Indices: 100729136--100729165 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
100729126 TTCATATACT
100729136 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100729166 GGTTTTGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100729786 original size:28 final size:28
Alignment explanation
Indices: 100729754--100729815 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
100729744 TTTTTTACCT
100729754 TGAACCCTAAATCTAGAATCCCAAACCA
1 TGAACCCTAAATCTAGAATCCCAAACCA
100729782 TGAACCCTAAATCTAGAATCCCAAACCA
1 TGAACCCTAAATCTAGAATCCCAAACCA
100729810 TGAACC
1 TGAACC
100729816 AAAAACTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.42, C:0.32, G:0.08, T:0.18
Consensus pattern (28 bp):
TGAACCCTAAATCTAGAATCCCAAACCA
Found at i:100729832 original size:28 final size:28
Alignment explanation
Indices: 100729762--100729842 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 28
100729752 CTTGAACCCT
* * **
100729762 AAATCTAGAATCCCAAACCATGAACCCT
1 AAATCTAAAACCCCAAACCATGAACCAA
* *
100729790 AAATCTAGAATCCCAAACCATGAACCAA
1 AAATCTAAAACCCCAAACCATGAACCAA
*
100729818 AAA-CTTAAAACCCCAAGCCAT-AACC
1 AAATC-TAAAACCCCAAACCATGAACC
100729843 TCAAACCCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 5 0.11
28 42 0.89
ACGTcount: A:0.47, C:0.32, G:0.06, T:0.15
Consensus pattern (28 bp):
AAATCTAAAACCCCAAACCATGAACCAA
Found at i:100734067 original size:168 final size:172
Alignment explanation
Indices: 100733856--100734197 Score: 532
Period size: 172 Copynumber: 2.0 Consensus size: 172
100733846 ATTTTTTAAA
* *
100733856 TTAATTTCCTCTTCCTGTTAAAGCATAATTCATTGAATATTTTTATACTAATATTTTT-T-TATA
1 TTAATTTCCTCTTCCTGTTAAAACATAATTCATTGAATATTTTTATACTAATATTTTTATAAATA
* * *
100733919 -CTACTTTTAGTTTTTAATTCCTCCTAACCTTTAAATTCGAAGAAAAATACACTTAAATATACAC
66 CCTACTTTTAGTTTTTAATTCCTCCTAACCTTTAAATTAGAAGAAAAACACACTTAAATACACAC
*
100733983 AAATTCACGTCT-CTGCCCTCTTAGTTACTATAAT-AAAATGG
131 AAATTCACGTCTCCT-CCCTCTTAGTTACTACAATAAAAATGG
* * *
100734024 TTAATTTCCTCTTCCTTTTAAAACATTATTCATTTAATATTTTTATACTAATATTTTTATACAAT
1 TTAATTTCCTCTTCCTGTTAAAACATAATTCATTGAATATTTTTATACTAATATTTTTATA-AAT
* *
100734089 ACCTACTTTTAGTTTTTAATTCCTCCTAACCTTTAAATTAGAAGAAAAACGCATTTAAATACACA
65 ACCTACTTTTAGTTTTTAATTCCTCCTAACCTTTAAATTAGAAGAAAAACACACTTAAATACACA
100734154 CAAATTCACGTCTCCTCCCTCTTAGTTACTACAATAAAAATGG
130 CAAATTCACGTCTCCTCCCTCTTAGTTACTACAATAAAAATGG
100734197 T
1 T
100734198 GCCAGTTAAA
Statistics
Matches: 157, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
168 54 0.34
169 1 0.01
171 3 0.02
172 89 0.57
173 10 0.06
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.42
Consensus pattern (172 bp):
TTAATTTCCTCTTCCTGTTAAAACATAATTCATTGAATATTTTTATACTAATATTTTTATAAATA
CCTACTTTTAGTTTTTAATTCCTCCTAACCTTTAAATTAGAAGAAAAACACACTTAAATACACAC
AAATTCACGTCTCCTCCCTCTTAGTTACTACAATAAAAATGG
Found at i:100734089 original size:13 final size:14
Alignment explanation
Indices: 100734058--100734089 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
100734048 ATTATTCATT
100734058 TAATATTTTTATAC
1 TAATATTTTTATAC
100734072 TAATATTTTTATAC
1 TAATATTTTTATAC
100734086 -AATA
1 TAATA
100734090 CCTACTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATTTTTATAC
Found at i:100735955 original size:19 final size:19
Alignment explanation
Indices: 100735912--100735957 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
100735902 CAAAAGTTTT
100735912 ATAAATTAGAAATTGATTG
1 ATAAATTAGAAATTGATTG
100735931 -TGAAATTAGAAATAT-ATTG
1 AT-AAATTAGAAAT-TGATTG
100735950 ATAAATTA
1 ATAAATTA
100735958 TTATGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (19 bp):
ATAAATTAGAAATTGATTG
Found at i:100738704 original size:23 final size:23
Alignment explanation
Indices: 100738677--100738755 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
100738667 TCTTTGGAAA
100738677 ACCTTTGTGGTGTATTCTATGAT
1 ACCTTTGTGGTGTATTCTATGAT
* * *
100738700 ACCTTTATGGTATATTCTGTGA-
1 ACCTTTGTGGTGTATTCTATGAT
* *
100738722 AGCATTTGTAGTGTATTCTATGAT
1 A-CCTTTGTGGTGTATTCTATGAT
* *
100738746 GCTTTTGTGG
1 ACCTTTGTGG
100738756 CATATTCTGT
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (23 bp):
ACCTTTGTGGTGTATTCTATGAT
Found at i:100738736 original size:46 final size:46
Alignment explanation
Indices: 100738680--100738770 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
100738670 TTGGAAAACC
* * *
100738680 TTTGTGGTGTATTCTATGATACCTTTATGGTATATTCTGTGAAGCA
1 TTTGTAGTGTATTCTATGATACCTTTATGGCATATTCTGTAAAGCA
* * *
100738726 TTTGTAGTGTATTCTATGATGCTTTTGTGGCATATTCTGTAAAGC
1 TTTGTAGTGTATTCTATGATACCTTTATGGCATATTCTGTAAAGC
100738771 TAATAACTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.21, C:0.11, G:0.22, T:0.46
Consensus pattern (46 bp):
TTTGTAGTGTATTCTATGATACCTTTATGGCATATTCTGTAAAGCA
Found at i:100740166 original size:23 final size:23
Alignment explanation
Indices: 100740140--100740193 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
100740130 CTGTGAAAAA
*
100740140 GCCTTTGTAGCATATTCTGTAAT
1 GCCTTTGTAGCATATTCTGTAAC
* * *
100740163 GCCTTTATGGCGTATTCTGTAAC
1 GCCTTTGTAGCATATTCTGTAAC
*
100740186 GCCCTTGT
1 GCCTTTGT
100740194 GGTGAAATCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (23 bp):
GCCTTTGTAGCATATTCTGTAAC
Found at i:100752155 original size:18 final size:18
Alignment explanation
Indices: 100752134--100752173 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
100752124 GCTAAATTGA
100752134 AGTGGCCAAATAAATAGG
1 AGTGGCCAAATAAATAGG
100752152 AGTGGCCAAATAAATAGG
1 AGTGGCCAAATAAATAGG
100752170 AGTG
1 AGTG
100752174 CAAAATAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.17
Consensus pattern (18 bp):
AGTGGCCAAATAAATAGG
Found at i:100752181 original size:13 final size:13
Alignment explanation
Indices: 100752163--100752197 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
100752153 GTGGCCAAAT
100752163 AAATAGGAGTGCA
1 AAATAGGAGTGCA
100752176 AAATAGGAGTGCA
1 AAATAGGAGTGCA
100752189 AAATAGGAG
1 AAATAGGAG
100752198 GATTGGCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.49, C:0.06, G:0.31, T:0.14
Consensus pattern (13 bp):
AAATAGGAGTGCA
Found at i:100752337 original size:26 final size:26
Alignment explanation
Indices: 100752306--100752413 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
100752296 TGATACAAAT
100752306 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100752332 TTATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100752358 TGATAATTGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
100752384 TGATAATGTGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
100752410 TGAT
1 TGAT
100752414 GGGAATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:100753586 original size:8 final size:8
Alignment explanation
Indices: 100753573--100753602 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
100753563 CTAGATTGGC
100753573 AAAAGCCG
1 AAAAGCCG
100753581 AAAAGCCG
1 AAAAGCCG
*
100753589 AAATGCCG
1 AAAAGCCG
100753597 AAAAGC
1 AAAAGC
100753603 AGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:100754091 original size:27 final size:27
Alignment explanation
Indices: 100753994--100754098 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
100753984 AGGAAGCGTC
*
100753994 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
100754021 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
100754048 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
100754075 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
100754099 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:100765149 original size:40 final size:41
Alignment explanation
Indices: 100765095--100765191 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 41
100765085 TAAGTCAGTA
*
100765095 TCGCACACTTAGTGCC-TTATATAGCC-AGAGCTAT-TCCAAC
1 TCGCACACTTAGTGCCATT-TATAGCCGA-AGCTATATCAAAC
* *
100765135 TCGCACACTTAGTGCCATTTGTAGCCGAAGCTATATTAAAC
1 TCGCACACTTAGTGCCATTTATAGCCGAAGCTATATCAAAC
100765176 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
100765192 AGCATAGTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
40 44 0.86
41 7 0.14
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATTTATAGCCGAAGCTATATCAAAC
Found at i:100772013 original size:137 final size:137
Alignment explanation
Indices: 100771806--100772227 Score: 794
Period size: 137 Copynumber: 3.1 Consensus size: 137
100771796 TATTGGGCCT
**
100771806 AAGCCCATTCAGGTAACA-TGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
100771870 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
100771935 CATATGC
131 CATATGC
100771942 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
100772007 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
100772072 CATATGC
131 CATATGC
100772079 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
100772144 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
100772208 CATATGC
131 CATATGC
100772215 AAGCCCATTTGGG
1 AAGCCCATTTGGG
100772228 GAGACTACTC
Statistics
Matches: 281, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
136 38 0.14
137 243 0.86
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAA
CATATGC
Found at i:100772049 original size:64 final size:64
Alignment explanation
Indices: 100771839--100772186 Score: 177
Period size: 64 Copynumber: 5.2 Consensus size: 64
100771829 CTGGGCCAGA
*
100771839 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * * *** * ** *
100771903 GCCCATTTCAAAATACATGTAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAGATTACA-ATAA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
100771966 CTGGGCCAGA-
55 -TGGCCCATAG
*
100771976 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * * *** * ** *
100772040 GCCCATTTCAAAATACATGTAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAGATTACA-ATAA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
100772103 CTGGGCCAGA-
55 -TGGCCCATAG
*
100772113 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
100772177 GCCCATTTCA
1 GCCCATTTCA
100772187 AAATACATGC
Statistics
Matches: 197, Mismatches: 57, Indels: 60
0.63 0.18 0.19
Matches are distributed among these distances:
63 14 0.07
64 43 0.22
65 12 0.06
66 2 0.01
67 22 0.11
68 10 0.05
69 10 0.05
70 22 0.11
71 2 0.01
72 12 0.06
73 34 0.17
74 14 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:100774049 original size:26 final size:26
Alignment explanation
Indices: 100774013--100774148 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
100774003 CATGATATTC
100774013 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
100774039 TTATCATGAAACATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
100774065 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
100774091 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
100774117 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
100774143 TTATCA
1 TTATCA
100774149 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:100777060 original size:17 final size:17
Alignment explanation
Indices: 100777013--100777062 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
100777003 AGTTAAACGA
*
100777013 TTCTTTTCCCTC-TTCT
1 TTCTTTTCCCTCATTTT
* *
100777029 TTCCTTT-CTTCATTTT
1 TTCTTTTCCCTCATTTT
100777045 TTCTTTTCCCTCATTTT
1 TTCTTTTCCCTCATTTT
100777062 T
1 T
100777063 ATTTATTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 3 0.11
16 15 0.56
17 9 0.33
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (17 bp):
TTCTTTTCCCTCATTTT
Found at i:100777078 original size:31 final size:32
Alignment explanation
Indices: 100777013--100777082 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
100777003 AGTTAAACGA
* *
100777013 TTCTTTTCCCTCTTCTTTCCTTTCTTCATTTT
1 TTCTTTTCCCTCTTCTTTCATTTATTCATTTT
*
100777045 TTCTTTTCCCTCATT-TTT-ATTTATTTATTTT
1 TTCTTTTCCCTC-TTCTTTCATTTATTCATTTT
100777076 TTCTTTT
1 TTCTTTT
100777083 TATCATTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 17 0.50
32 15 0.44
33 2 0.06
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (32 bp):
TTCTTTTCCCTCTTCTTTCATTTATTCATTTT
Found at i:100784372 original size:122 final size:122
Alignment explanation
Indices: 100784182--100784430 Score: 299
Period size: 122 Copynumber: 2.0 Consensus size: 122
100784172 GCAAAAATTG
*
100784182 TAAAACACAGAGCAATGCGGCGTTTATGGTAAAACGCCGCTAAAAACAAAGCAATAGCAGCATTT
1 TAAAACACAGAGCAATGCGGCGTTTATGGTAAAACGCCGCTAAAAACAAAGCAATAGCAGCATCT
* * * *
100784247 TTTGTTAAAACGCCACTAAAA-ACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGC
66 TTTGGTAAAACGCCACTAAAAGACAGAGCAATAGCGGCG-CTTTTGGTAAAACCCCGC
* *** *
100784304 TAAAA-ACAGAGCAATAGCGGCGCTTT-TGGTAAAACGCCGCTAAAAGTCGGGGCAATAGCGGC-
1 TAAAACACAGAGCAAT-GCGGCG-TTTATGGTAAAACGCCGCTAAAA-ACAAAGCAATAGCAGCA
** * * *
100784366 TCTTTTGGTAAAACGCTGCTAAAAGTCGGAGCATTAGCGGCGCTTTTGGTAAAACCCCGC
63 TCTTTTGGTAAAACGCCACTAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACCCCGC
100784426 TAAAA
1 TAAAA
100784431 GTCATATAAC
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
121 10 0.09
122 70 0.65
123 28 0.26
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (122 bp):
TAAAACACAGAGCAATGCGGCGTTTATGGTAAAACGCCGCTAAAAACAAAGCAATAGCAGCATCT
TTTGGTAAAACGCCACTAAAAGACAGAGCAATAGCGGCGCTTTTGGTAAAACCCCGC
Found at i:100784431 original size:41 final size:41
Alignment explanation
Indices: 100784191--100784433 Score: 253
Period size: 41 Copynumber: 6.0 Consensus size: 41
100784181 GTAAAACACA
* *
100784191 GAGCAAT-GCGGCG-TTTATGGTAAAACGCCGCTAAAA-ACA
1 GAGCAATAGCGGCGCTTT-TGGTAAAACGCCGCTAAAAGTCG
* * ** * * * *
100784230 AAGCAATAGCAGCATTTTTTGTTAAAACGCCACTAAAA-ACA
1 GAGCAATAGCGGC-GCTTTTGGTAAAACGCCGCTAAAAGTCG
* * * *
100784271 GAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAA-ACA
1 GAGCAATAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAGTCG
100784312 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * *
100784353 GGGCAATAGCGGCTCTTTTGGTAAAACGCTGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
100784394 GAGCATTAGCGGCGCTTTTGGTAAAACCCCGCTAAAAGTC
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
100784434 ATATAACCCC
Statistics
Matches: 178, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 6 0.03
40 25 0.14
41 144 0.81
42 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:100784513 original size:37 final size:37
Alignment explanation
Indices: 100784471--100784542 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
100784461 AAAAATCATG
* * *
100784471 AACACTAATCTATAACTCCTAAAATACTAAACCCCTA
1 AACACTAAACCATAACTCCTAAAACACTAAACCCCTA
** *
100784508 AACACTAAACCATAACTTTTAAAACCCTAAACCCC
1 AACACTAAACCATAACTCCTAAAACACTAAACCCC
100784543 AAAAAACGTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (37 bp):
AACACTAAACCATAACTCCTAAAACACTAAACCCCTA
Found at i:100784681 original size:7 final size:7
Alignment explanation
Indices: 100784671--100784718 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
100784661 TAGTTTAATA
100784671 TTTAAGG
1 TTTAAGG
100784678 TTTAAGG
1 TTTAAGG
* *
100784685 TCTATGG
1 TTTAAGG
*
100784692 TTTAGGG
1 TTTAAGG
*
100784699 TTTTATGG
1 -TTTAAGG
100784707 TTTAAGG
1 TTTAAGG
100784714 TTTAA
1 TTTAA
100784719 TGGCCATGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (7 bp):
TTTAAGG
Found at i:100784707 original size:15 final size:15
Alignment explanation
Indices: 100784671--100784721 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
100784661 TAGTTTAATA
*
100784671 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
100784685 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
100784700 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
100784715 TTAATGG
1 TTTATGG
100784722 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:100785322 original size:8 final size:8
Alignment explanation
Indices: 100785309--100785377 Score: 56
Period size: 8 Copynumber: 9.1 Consensus size: 8
100785299 AAATAAACTC
100785309 AAAATTTA
1 AAAATTTA
100785317 AAAATTT-
1 AAAATTTA
100785324 AAAATTTA
1 AAAATTTA
100785332 AAAA--TA
1 AAAATTTA
*
100785338 AAAA-ATA
1 AAAATTTA
* *
100785345 AAAAATAA
1 AAAATTTA
* *
100785353 AAAAATAA
1 AAAATTTA
*
100785361 AAAACTTA
1 AAAATTTA
100785369 AAAATTTA
1 AAAATTTA
100785377 A
1 A
100785378 TATTTAATAT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
6 6 0.11
7 13 0.25
8 34 0.64
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAATTTA
Found at i:100785341 original size:7 final size:7
Alignment explanation
Indices: 100785331--100785364 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
100785321 TTTAAAATTT
100785331 AAAAATA
1 AAAAATA
100785338 AAAAATA
1 AAAAATA
100785345 AAAAATAA
1 AAAAAT-A
100785353 AAAAATA
1 AAAAATA
100785360 AAAAA
1 AAAAA
100785365 CTTAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:100785342 original size:15 final size:15
Alignment explanation
Indices: 100785309--100785377 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 15
100785299 AAATAAACTC
**
100785309 AAAATTTAAAAATTT
1 AAAATTTAAAAATAA
100785324 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
*
100785339 AAAA-TAAAAAATAA
1 AAAATTTAAAAATAA
* * *
100785353 AAAAATAAAAAACTTA
1 AAAATTTAAAAA-TAA
100785369 AAAATTTAA
1 AAAATTTAA
100785378 TATTTAATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
14 13 0.28
15 24 0.52
16 9 0.20
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAATAA
Found at i:100787760 original size:4 final size:4
Alignment explanation
Indices: 100787751--100787777 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
100787741 TCAAATAATA
100787751 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
100787778 ACTATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:100789663 original size:43 final size:43
Alignment explanation
Indices: 100789592--100789772 Score: 274
Period size: 43 Copynumber: 4.2 Consensus size: 43
100789582 TATCATTATT
* * * *
100789592 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTTATGATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
100789635 TTTAACGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
100789678 TTTAGCGGCGTTTGCT-TAAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTG-TGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
100789721 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
100789764 TTTAGCGGC
1 TTTAGCGGC
100789773 ATTTTTTTAA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
43 124 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:100790469 original size:184 final size:184
Alignment explanation
Indices: 100790160--100790519 Score: 587
Period size: 184 Copynumber: 2.0 Consensus size: 184
100790150 GATTTCAGAT
* *
100790160 CTAACAAAATTTTGAAATGGTTAAAAGTGTGGAGGGAAGGGACTGCAGGTGGTCTTATATAGCCA
1 CTAACAAAATTTTGAAATGGTTAAAAGTGTGGAGGGAAGGGACTGCAGGTGATCTTATATAACCA
100790225 ACCAATTTTTAAAAATTGGGCTTTTGACCCTTTGACCACATATAGTTTCCTCTCTTTTCCAAATT
66 ACCAATTTTTAAAAATTGGGCTTTTGACCCTTTGACCACATATAGTTTCCTCTCTTTTCCAAATT
*
100790290 GGTCCTTAGTTTCCAATTGAAGCCAATCTCAAATTTATCTTCAAATTTTTAGAC
131 GGTCCTTAGTTTCCAATTGAAGCCAATCTCAAAATTATCTTCAAATTTTTAGAC
* * * * * *
100790344 CTAACAAAGTTTTGAAATGGTTGAAAGTGTGGAGGGAATGGATTGTAGGTGATTTTATATAACCA
1 CTAACAAAATTTTGAAATGGTTAAAAGTGTGGAGGGAAGGGACTGCAGGTGATCTTATATAACCA
* *
100790409 ACTAATTTTTAAAAATTGGGCTTTTGACCCTTTGACCACCTATAGTTTCCTCAT-TTTTCCAAAT
66 ACCAATTTTTAAAAATTGGGCTTTTGACCCTTTGACCACATATAGTTTCCTC-TCTTTTCCAAAT
* *
100790473 TGGTCCTTAGTTTCTAATTGAAGCCAATCTCAAAATTATTTTCAAAT
130 TGGTCCTTAGTTTCCAATTGAAGCCAATCTCAAAATTATCTTCAAAT
100790520 CTGATCTCAT
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
184 161 0.99
185 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (184 bp):
CTAACAAAATTTTGAAATGGTTAAAAGTGTGGAGGGAAGGGACTGCAGGTGATCTTATATAACCA
ACCAATTTTTAAAAATTGGGCTTTTGACCCTTTGACCACATATAGTTTCCTCTCTTTTCCAAATT
GGTCCTTAGTTTCCAATTGAAGCCAATCTCAAAATTATCTTCAAATTTTTAGAC
Found at i:100794262 original size:11 final size:11
Alignment explanation
Indices: 100794248--100794292 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
100794238 AGATAAATAT
100794248 TATTTTATTAA
1 TATTTTATTAA
*
100794259 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
100794272 TATTTTATTAT
1 TATTTTATTAA
100794283 TATTTTATTA
1 TATTTTATTA
100794293 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:100796499 original size:46 final size:46
Alignment explanation
Indices: 100796432--100796694 Score: 375
Period size: 46 Copynumber: 5.7 Consensus size: 46
100796422 TGGCAACCTG
*
100796432 TGTGTAAGACCATGGCTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
100796478 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
100796524 TGTGAAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
100796570 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
100796616 AGAATAAGATCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
100796662 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
100796695 TCACGTCAAA
Statistics
Matches: 198, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 197 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:100796630 original size:138 final size:130
Alignment explanation
Indices: 100796383--100796694 Score: 410
Period size: 138 Copynumber: 2.3 Consensus size: 130
100796373 AGTGTGCTCT
100796383 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGC
* * **
100796448 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
100796513 CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
* * *
100796578 ACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGATCATGGTTGAAAGATACC
58 ACCATGGCTGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACC
100796643 ATGGCAAC
123 ATGGCAAC
* * * * * *
100796651 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
100796695 TCACGTCAAA
Statistics
Matches: 158, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
130 46 0.29
135 1 0.01
137 2 0.01
138 109 0.69
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGC
TGAAAGATACCATGGCAACCTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:100820776 original size:12 final size:12
Alignment explanation
Indices: 100820761--100820796 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
100820751 TATTTTTTTC
100820761 TTCTTTTAAGAG
1 TTCTTTTAAGAG
*
100820773 TTCTTTTAAGTG
1 TTCTTTTAAGAG
100820785 TTCTTTTAAGAG
1 TTCTTTTAAGAG
100820797 CGAATCAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (12 bp):
TTCTTTTAAGAG
Found at i:100821621 original size:89 final size:90
Alignment explanation
Indices: 100821486--100821676 Score: 219
Period size: 89 Copynumber: 2.1 Consensus size: 90
100821476 AATAATCTAT
* * *
100821486 AAACACTGGTGGTTTATCCACAATTTATACTAGTAGCTTTAATCTGC-AACTAAGCTGTGTATTC
1 AAACACTGGTGG-TTATCCACAATTCATACTAGCAGCTTTAATCTGCAAACT-AGCTGTGTAATC
*
100821550 ACAAGTACT-GACAGCGTATTAACCTGA
64 ACAACTACTAG-CAGCGTATTAACCTGA
* * * * * * *
100821577 AAACATTGGTGG-TATCCATAATTCATACTGGCATCTTTTATCTGCAAACTCGTTGTGTAATCAC
1 AAACACTGGTGGTTATCCACAATTCATACTAGCAGCTTTAATCTGCAAACTAGCTGTGTAATCAC
100821641 AACTACTAGCAGCGTATTAACCTG-
66 AACTACTAGCAGCGTATTAACCTGA
*
100821665 CAACACTGGTGG
1 AAACACTGGTGG
100821677 CTCAGCCACA
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
88 10 0.12
89 59 0.69
90 5 0.06
91 11 0.13
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (90 bp):
AAACACTGGTGGTTATCCACAATTCATACTAGCAGCTTTAATCTGCAAACTAGCTGTGTAATCAC
AACTACTAGCAGCGTATTAACCTGA
Found at i:100825379 original size:13 final size:14
Alignment explanation
Indices: 100825363--100825398 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
100825353 CAATCTCATA
100825363 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
100825376 TCTCAATTT-AATT
1 TCTCAATTTCAATT
100825389 TCTC-ATTTCA
1 TCTCAATTTCA
100825399 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:100825604 original size:23 final size:21
Alignment explanation
Indices: 100825566--100825769 Score: 309
Period size: 21 Copynumber: 9.4 Consensus size: 21
100825556 GACACATAAA
* *
100825566 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
100825587 GTGCCTGTTACGACACACGAG
1 GTGCCTGATACGACACACGAG
100825608 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
100825629 GTGCCTAATACGACACACGAG
1 GTGCCTGATACGACACACGAG
100825650 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
100825671 GTGCCTGAAATACGACACACGAG
1 GTGCCTG--ATACGACACACGAG
100825694 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
100825715 GTGCCTGAAATACAACACACGAG
1 GTGCCTG--ATACGACACACGAG
100825738 GTGCCTGAAATACGACACACGAG
1 GTGCCTG--ATACGACACACGAG
100825761 GTGCCTGAT
1 GTGCCTGAT
100825770 TGATAAAGCC
Statistics
Matches: 171, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
21 108 0.63
23 63 0.37
ACGTcount: A:0.31, C:0.27, G:0.26, T:0.15
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:100826060 original size:15 final size:15
Alignment explanation
Indices: 100826034--100826090 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
100826024 CATATATATT
100826034 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
100826048 ATATAATTTCAATCA
1 ATATAATTTCAATCA
* *
100826063 AAATAATTTCGATCA
1 ATATAATTTCAATCA
*
100826078 ATATAAATTCAAT
1 ATATAATTTCAAT
100826091 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:100827370 original size:5 final size:5
Alignment explanation
Indices: 100827360--100827407 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
100827350 TTACTTATTT
* *
100827360 ATATA ATATAA TATATA ATATA ATATA CTATA ATAATA ATTTA ATATA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
100827408 TATTTTAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 25 0.69
6 7 0.19
7 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:100827376 original size:12 final size:12
Alignment explanation
Indices: 100827359--100827409 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
100827349 TTTACTTATT
100827359 TATATAATATAA
1 TATATAATATAA
100827371 TATATAATAT-A
1 TATATAATATAA
*
100827382 -ATATACTATAA
1 TATATAATATAA
*
100827393 TA-ATAATTTAA
1 TATATAATATAA
100827404 TATATA
1 TATATA
100827410 TTTTAACACA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.24
11 11 0.33
12 14 0.42
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:100834404 original size:16 final size:16
Alignment explanation
Indices: 100834383--100834415 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
100834373 GTTGTCTAAT
100834383 ATGAATATACCTGTTG
1 ATGAATATACCTGTTG
100834399 ATGAATATACCTGTTG
1 ATGAATATACCTGTTG
100834415 A
1 A
100834416 GTCTACGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (16 bp):
ATGAATATACCTGTTG
Found at i:100843245 original size:46 final size:46
Alignment explanation
Indices: 100843178--100843398 Score: 261
Period size: 46 Copynumber: 4.8 Consensus size: 46
100843168 TGTAACCCGC
** *
100843178 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
100843224 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* ** *
100843270 CCATAAATGAACTCAAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * *
100843320 -C-TCA-CGAACTCGGACTCAACTCGACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
100843363 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
100843399 ATGCCCAAAT
Statistics
Matches: 149, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
44 2 0.01
45 2 0.01
46 103 0.69
47 25 0.17
48 3 0.02
49 2 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:100843358 original size:93 final size:93
Alignment explanation
Indices: 100843232--100843403 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
100843222 ATCCATAAGT
*
100843232 GAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCAAACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
100843297 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * **
100843325 GAACTCGGACTCAACTCGACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
100843390 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
100843404 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.19
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:100845937 original size:20 final size:20
Alignment explanation
Indices: 100845895--100845937 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
100845885 TAAAAGGATA
* * *
100845895 ATTTTAATCAATTTGATTTG
1 ATTTTAATCAAATTAATTCG
100845915 ATTTTAATCAAATTAATTCG
1 ATTTTAATCAAATTAATTCG
100845935 ATT
1 ATT
100845938 GCTGCTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
ATTTTAATCAAATTAATTCG
Found at i:100845969 original size:11 final size:11
Alignment explanation
Indices: 100845953--100845978 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
100845943 TTTAACGTAG
100845953 ATTTTGTCTAC
1 ATTTTGTCTAC
100845964 ATTTTGTCTAC
1 ATTTTGTCTAC
100845975 ATTT
1 ATTT
100845979 CTCCAAGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.08, T:0.58
Consensus pattern (11 bp):
ATTTTGTCTAC
Found at i:100846121 original size:16 final size:14
Alignment explanation
Indices: 100846102--100846147 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
100846092 TAAATATAAA
100846102 TTATTCTATTTATATT
1 TTATT-TATTTAT-TT
*
100846118 TTATTTTATATATTT
1 TTA-TTTATTTATTT
100846133 TTATTTATTTATTT
1 TTATTTATTTATTT
100846147 T
1 T
100846148 ATTCGCTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 11 0.41
15 5 0.19
16 9 0.33
17 2 0.07
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTATTTATTT
Found at i:100846127 original size:28 final size:27
Alignment explanation
Indices: 100846096--100846150 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
100846086 AAAAACTAAA
100846096 TATAAATTATTCTATTTA-TATTTTATTT
1 TATAAATT-TT-TATTTATTATTTTATTT
*
100846124 TATATATTTTTATTTATTTATTTTATT
1 TATAAATTTTTATTTA-TTATTTTATT
100846151 CGCTAACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 6 0.25
27 2 0.08
28 16 0.67
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (27 bp):
TATAAATTTTTATTTATTATTTTATTT
Found at i:100849379 original size:13 final size:13
Alignment explanation
Indices: 100849361--100849385 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100849351 TTACTATATA
100849361 AATAAGGGAATTC
1 AATAAGGGAATTC
100849374 AATAAGGGAATT
1 AATAAGGGAATT
100849386 AGTGAATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (13 bp):
AATAAGGGAATTC
Found at i:100853045 original size:44 final size:45
Alignment explanation
Indices: 100852962--100853049 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 45
100852952 GATATTTGCT
*
100852962 ATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
1 ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGTC
* *
100853007 ATCTTTGATCTGCTCTCTGTC-AACACAGAGACGCCAAATCTGT
1 ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGT
100853050 TTTGATCTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 21 0.52
45 19 0.47
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (45 bp):
ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGTC
Found at i:100853390 original size:43 final size:42
Alignment explanation
Indices: 100853284--100855077 Score: 316
Period size: 43 Copynumber: 41.7 Consensus size: 42
100853274 TGATTTCTAG
* * *
100853284 CCTGTTACCCTACTACTTAGGGGGTTAAGGCCCATCGT--ATTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-G---ATTGTAAATTTAA
* * * * * *
100853328 TCTGTTTCCCTACTACTTAGGGTGATAAGATATGTGAATTTAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * ***
100853371 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * ** *
100853415 -TTATCT-CCACTGA-TGCTTAGGGAGACAAGATCTGTAAATTCAA
1 CCTGT-TACC-CT-ACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* *
100853458 CCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA-TTGTAAAT-TT-AA
**
100853503 CCTGTTACCCTACTGCTTAGGGGGTTAAGGATTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** *
100853546 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTA-AAT-TT-AA
* * * *
100853590 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * ***
100853633 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100853675 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100853719 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100853764 CCTGTTACCCTACTGCTT-GGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100853806 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100853846 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * *
100853889 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTGT-AATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100853931 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100853975 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100854020 CCTGTTACCCTACTGCTTA-GGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100854062 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100854102 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * ***
100854145 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * **
100854187 TCTGTTACCCTA-TCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACT-GCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100854231 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100854276 CCTGTTACCCTACTGCTT-GGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100854318 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100854358 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * * *
100854401 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100854443 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * * *
100854487 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * **
100854532 CCTGTTACCCTACTGCTTGGGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100854575 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * ** **
100854615 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TCAGCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGT-AAATTTAA
* * * * * * * *
100854658 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100854700 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * * *
100854744 TCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100854789 CCTGTTACCCTACTGCTT-GGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** ** *
100854831 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGA
1 CCTGTTACCCTACTGCTTAGGGGGTT-AAGATTGT-AAATTTAA
* * * *
100854875 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * * * *
100854918 TCTCTTTCCCTATTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
** * * * * *
100854960 TTTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTTGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100855004 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
*
100855049 CCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAG
100855078 GCTTGTGAAT
Statistics
Matches: 1322, Mismatches: 297, Indels: 261
0.70 0.16 0.14
Matches are distributed among these distances:
38 8 0.01
39 20 0.02
40 78 0.06
41 40 0.03
42 243 0.18
43 376 0.28
44 368 0.28
45 185 0.14
46 4 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (42 bp):
CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAATTTAA
Found at i:100853414 original size:87 final size:86
Alignment explanation
Indices: 100853284--100854905 Score: 359
Period size: 87 Copynumber: 18.9 Consensus size: 86
100853274 TGATTTCTAG
* * * *
100853284 CCTGTTACCCTACTACTTAGGGGGTTAAGGCCCATCGTATTCAATCTGTTTCCCTACTACTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* *
100853349 GTGATAAGATATGTGAATTTAA
66 GGGATAAGAT-TGTAAATTTAA
* ** * * * *
100853371 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCAAT-TATCTCCACTGA-TGCTTA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCC-CT-ACTGCTTA
* * *
100853434 GGGAGACAAGATCTGTAAATTCAA
64 GGGGGATAAGAT-TGTAAATTTAA
* ***** * ** *
100853458 CCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* **
100853523 GGGGTTAAGGATTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100853546 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100853611 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * ** * * *
100853633 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100853695 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100853719 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100853783 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100853806 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100853867 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** ** * * * * *
100853889 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTGT-A-ATTCAGTCTGTTACCCTACCGATTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
** * **
100853952 GGTTTAAGACCCTTCGT--CTTCGA
66 GGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100853975 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100854039 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100854062 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100854123 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * ** * *
100854145 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCGGTCTGTTACCCTA-TCGATTA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACT-GCTTA
** * **
100854206 GGGGTTTAAGACCCTTCGT--CTTCGA
64 GGGGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100854231 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100854295 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100854318 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100854379 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * * * * *
100854401 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCAGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100854463 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * * ** ** * ** * *
100854487 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100854552 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100854575 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* ** **
100854636 GGGTTAAGATCT-TCAGCTTCGA
66 GGGATAAGAT-TGT-AAATTTAA
* * * * * ** * * * * *
100854658 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCAGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100854720 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * * ** ** * ** *
100854744 TCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100854808 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* * **
100854831 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
*
100854896 GGGTTAAGAT
66 GGGATAAGAT
100854906 CTTCATCTTC
Statistics
Matches: 1145, Mismatches: 292, Indels: 197
0.70 0.18 0.12
Matches are distributed among these distances:
81 6 0.01
82 85 0.07
83 134 0.12
84 21 0.02
85 161 0.14
86 226 0.20
87 265 0.23
88 123 0.11
89 122 0.11
90 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
GGGATAAGATTGTAAATTTAA
Found at i:100853936 original size:256 final size:256
Alignment explanation
Indices: 100853459--100855088 Score: 2990
Period size: 256 Copynumber: 6.3 Consensus size: 256
100853449 TAAATTCAAC
* * *
100853459 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GG
* *
100853524 GGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCA
65 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCG
100853589 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
126 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
*
100853654 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
191 GAGATAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
100853719 T
256 T
100853720 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
100853785 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
66 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
100853850 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
131 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
*
100853915 AAGATCTGTAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 AAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
*
100853976 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
100854041 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
66 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
100854106 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
131 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
* *
100854171 AAGATCTGCAATTCGGTCTGTTACCCTATCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 AAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100854232 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
100854297 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
66 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
100854362 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
131 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
100854427 AAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 AAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
*
100854488 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GG
100854553 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
65 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
*
100854618 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCAGCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
130 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
100854683 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
195 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
*
100854745 CTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
*
100854810 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGA
66 GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCGA
*
100854875 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTATTGCTTAGGG
127 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGG
* *
100854940 AGATAAGATCTGCAATTCAGTTTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGAT
192 AGATAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100855005 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GG
* *
100855070 GGTTTAAGGCTTGTGAATT
65 GGGTTAAGGCTTGTAAATT
100855089 CACTGATTCT
Statistics
Matches: 1337, Mismatches: 26, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
256 753 0.56
257 257 0.19
259 4 0.00
260 245 0.18
261 78 0.06
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (256 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
GGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTG
TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGAT
AAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
Found at i:100855251 original size:61 final size:64
Alignment explanation
Indices: 100855134--100855258 Score: 177
Period size: 61 Copynumber: 2.0 Consensus size: 64
100855124 CCATGTATCT
* *
100855134 ATGCTTATGTCAAATGATTAGGATGCTATGATCGAAATTAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
* *
100855198 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATCAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
100855259 TTACTGTATA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
61 29 0.52
62 2 0.04
63 1 0.02
64 5 0.09
65 19 0.34
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
Found at i:100856889 original size:7 final size:7
Alignment explanation
Indices: 100856871--100856916 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
100856861 ATGATCCCCC
100856871 CTTTTTT
1 CTTTTTT
100856878 CCTTTTTT
1 -CTTTTTT
100856886 C--TTTT
1 CTTTTTT
100856891 -TTTTTT
1 CTTTTTT
100856897 CTTTTTT
1 CTTTTTT
*
100856904 CTTTTCT
1 CTTTTTT
100856911 CTTTTT
1 CTTTTT
100856917 ATTGGGGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
6 4 0.12
7 18 0.55
8 7 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
CTTTTTT
Found at i:100856895 original size:18 final size:18
Alignment explanation
Indices: 100856872--100856908 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
100856862 TGATCCCCCC
100856872 TTTTTTCCTTTTTTCTTT
1 TTTTTTCCTTTTTTCTTT
*
100856890 TTTTTTTCTTTTTTCTTT
1 TTTTTTCCTTTTTTCTTT
100856908 T
1 T
100856909 CTCTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTTTCCTTTTTTCTTT
Found at i:100859595 original size:25 final size:25
Alignment explanation
Indices: 100859561--100859612 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
100859551 GGGAAAGTCT
100859561 AATGCAAATG-ATGCAATGCAATACA
1 AATGCAAATGCATGCAATG-AATACA
* *
100859586 AATGCAAATGCATGGAATGAATGCA
1 AATGCAAATGCATGCAATGAATACA
100859611 AA
1 AA
100859613 AGAAAGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AATGCAAATGCATGCAATGAATACA
Found at i:100864068 original size:44 final size:45
Alignment explanation
Indices: 100863985--100864072 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 45
100863975 GATATTTGCT
*
100863985 ATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC
1 ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGTC
* *
100864030 ATCTTTGATCTGCTCTCTGTC-AACACAGAGACGCCAAATCTGT
1 ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGT
100864073 TTTGATCTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 21 0.52
45 19 0.47
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (45 bp):
ATCTTTGATCTGCTCCCCGTCTAACACAGAGACGCCAAATCTGTC
Found at i:100864413 original size:43 final size:42
Alignment explanation
Indices: 100864307--100866102 Score: 325
Period size: 43 Copynumber: 41.7 Consensus size: 42
100864297 TGATTTCTAG
* * *
100864307 CCTGTTACCCTACTACTTAGGGGGTTAAGGCCCATCGT--ATTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-G---ATTGTAAATTTAA
* * * * * *
100864351 TCTGTTTCCCTACTACTTAGGGTGATAAGATATGTGAATTTAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * ***
100864394 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * ** *
100864438 -TTATCT-CCACTGA-TGCTTAGGGAGACAAGATCTGTAAATTCAA
1 CCTGT-TACC-CT-ACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* *
100864481 CCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA-TTGTAAAT-TT-AA
**
100864526 CCTGTTACCCTACTGCTTAGGGGGTTAAGGATTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** *
100864569 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCAA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTA-AAT-TT-AA
* * * *
100864613 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * ***
100864656 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100864698 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100864742 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100864787 CCTGTTACCCTACTGCTT-GGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100864829 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100864869 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * *
100864912 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTGT-AATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100864954 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100864998 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100865043 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100865086 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100865126 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * ***
100865169 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * **
100865211 TCTGTTACCCTA-TCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACT-GCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100865255 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* **
100865300 CCTGTTACCCTACTGCTT-GGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100865342 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * * *
100865382 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * * *
100865425 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100865467 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * * *
100865511 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * **
100865556 CCTGTTACCCTACTGCTTGGGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** * *
100865599 CTTGTTACCCTACTGCTTA-GGGG--AAGCCCAT-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAAT-TT-AA
* * ** **
100865639 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TCAGCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGT-AAATTTAA
* * * * * * * *
100865682 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
* * * * * **
100865724 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * * *
100865768 TCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * **
100865813 CCTGTTACCCTACTGCTTGGGGGGTTAAGGCTTGTAAATTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAA-GATTGTAAATTTAA
* **** ** *
100865856 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGA
1 CCTGTTACCCTACTGCTTAGGGGGTT-AAGATTGT-AAATTTAA
* * * *
100865900 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
* * * * * * * * *
100865943 TCTCTTTCCCTATTGCTTAGGGAGATAAGATCTG-CAATTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAATTTAA
** * * * * *
100865985 TTTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT--CTTTGA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGA---TT-GTAAATTTAA
* * *
100866029 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGAT-TGTAAAT-TT-AA
*
100866074 CCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAG
100866103 GCTTGTGAAT
Statistics
Matches: 1323, Mismatches: 299, Indels: 259
0.70 0.16 0.14
Matches are distributed among these distances:
38 8 0.01
39 20 0.02
40 78 0.06
41 40 0.03
42 206 0.16
43 409 0.31
44 341 0.26
45 213 0.16
46 8 0.01
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (42 bp):
CCTGTTACCCTACTGCTTAGGGGGTTAAGATTGTAAATTTAA
Found at i:100864437 original size:87 final size:86
Alignment explanation
Indices: 100864307--100865930 Score: 368
Period size: 87 Copynumber: 18.9 Consensus size: 86
100864297 TGATTTCTAG
* * * *
100864307 CCTGTTACCCTACTACTTAGGGGGTTAAGGCCCATCGTATTCAATCTGTTTCCCTACTACTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* *
100864372 GTGATAAGATATGTGAATTTAA
66 GGGATAAGAT-TGTAAATTTAA
* ** * * * *
100864394 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCAAT-TATCTCCACTGA-TGCTTA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCC-CT-ACTGCTTA
* * *
100864457 GGGAGACAAGATCTGTAAATTCAA
64 GGGGGATAAGAT-TGTAAATTTAA
* ***** * ** *
100864481 CCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* **
100864546 GGGGTTAAGGATTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100864569 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100864634 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * ** * * *
100864656 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100864718 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100864742 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100864806 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100864829 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100864890 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** ** * * * * *
100864912 TCTCTTTCCCTACTGCTTAGGGAGATAAGATCTGT-A-ATTCAGTCTGTTACCCTACCGATTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
** * **
100864975 GGTTTAAGACCCTTCGT--CTTCGA
66 GGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100864998 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100865063 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100865086 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100865147 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * ** * *
100865169 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCGGTCTGTTACCCTA-TCGATTA
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACT-GCTTA
** * **
100865230 GGGGTTTAAGACCCTTCGT--CTTCGA
64 GGGGGATAAGA---TT-GTAAATTTAA
* * ** ** * ** *
100865255 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-G
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100865319 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100865342 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* * *
100865403 GGGTTAAGATCT-T-CATCTTCGA
66 GGGATAAGAT-TGTAAAT-TT-AA
* * * * * ** * * * * *
100865425 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCAGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100865487 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * * ** ** * ** * *
100865511 TCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100865576 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* *
100865599 CTTGTTACCCTACTGCTTA-GGGG--AA-GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* ** **
100865660 GGGTTAAGATCT-TCAGCTTCGA
66 GGGATAAGAT-TGT-AAATTTAA
* * * * * ** * * * * *
100865682 TCTCTTTCCCTACTGCTTAGGGAGATAA-GATC-TGCA-ATTCAGTCTGTTACCCTACCGATTAG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
** * **
100865744 GGGTTTAAGACCCTTCGT--CTTCGA
65 GGGGATAAGA---TT-GTAAATTTAA
* * * ** ** * ** * *
100865768 TCTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCAT-CATCTTCAATCTGTTTCCCTACTGCTTAG
* * **
100865833 GGGGTTAAGGCTTGTAAATTTGG
65 GGGGATAA-GATTGTAAATTTAA
* * **
100865856 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
*
100865921 GGGTTAAGAT
66 GGGATAAGAT
100865931 CTTCATCTTC
Statistics
Matches: 1147, Mismatches: 294, Indels: 193
0.70 0.18 0.12
Matches are distributed among these distances:
81 6 0.01
82 62 0.05
83 156 0.14
84 21 0.02
85 159 0.14
86 201 0.18
87 246 0.21
88 156 0.14
89 136 0.12
90 4 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
GGGATAAGATTGTAAATTTAA
Found at i:100865201 original size:257 final size:257
Alignment explanation
Indices: 100864482--100866113 Score: 2998
Period size: 257 Copynumber: 6.3 Consensus size: 257
100864472 TAAATTCAAC
* * *
100864482 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
100864547 GGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCA
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCG
100864612 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
127 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
*
100864677 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
192 GAGATAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
100864742 T
257 T
100864743 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100864807 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
100864872 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
*
100864937 TAAGATCTGTAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100864999 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100865064 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
100865129 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
* *
100865194 TAAGATCTGCAATTCGGTCTGTTACCCTATCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100865256 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100865320 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
100865385 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
100865450 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
* *
100865512 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100865577 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
*
100865642 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCAGCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
100865707 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
196 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
* *
100865769 CTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
*
100865834 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCG
*
100865899 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTATTGCTTAGG
127 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
* *
100865964 GAGATAAGATCTGCAATTCAGTTTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGA
192 GAGATAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
100866029 T
257 T
100866030 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
100866095 GGTTTAAGGCTTGTGAATT
66 GGGTTAAGGCTTGTAAATT
100866114 CACTGATTCT
Statistics
Matches: 1340, Mismatches: 25, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
256 459 0.34
257 550 0.41
258 4 0.00
259 4 0.00
260 42 0.03
261 281 0.21
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (257 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
Found at i:100865466 original size:513 final size:513
Alignment explanation
Indices: 100864482--100866113 Score: 3021
Period size: 513 Copynumber: 3.2 Consensus size: 513
100864472 TAAATTCAAC
* * *
100864482 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
100864547 GGGTTAAGGATTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCA
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCG
100864612 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
127 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGG
100864677 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
192 GAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGA
100864742 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGG
257 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGG
100864807 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
322 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
100864872 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
387 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
*
100864937 TAAGATCTGTAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
452 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100864999 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100865064 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
100865129 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
*
100865194 TAAGATCTGCAATTCGGTCTGTTACCCTATCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG
196 TAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG
100865259 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGGGGT
261 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGGGGT
100865324 TAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTGTTT
326 TAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTGTTT
100865389 CCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGATAAG
391 CCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGATAAG
100865454 ATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
456 ATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
* *
100865512 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
100865577 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
66 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
*
100865642 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCAGCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
131 GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
*
100865707 TAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG
196 TAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG
*
100865772 TTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGGGGG
261 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTT-GGGGG
*
100865837 TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
325 TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGGG---AAGCCCATCATCTTCGATC
*
100865902 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTATTGCTTAGGGAG
386 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAG
* *
100865967 ATAAGATCTGCAATTCAGTTTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTTGAT
451 ATAAGATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
100866030 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
100866095 GGTTTAAGGCTTGTGAATT
66 GGGTTAAGGCTTGTAAATT
100866114 CACTGATTCT
Statistics
Matches: 1089, Mismatches: 21, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
513 713 0.65
514 43 0.04
515 4 0.00
516 4 0.00
517 102 0.09
518 223 0.20
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (513 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCT
GTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGA
TAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG
TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTGGGGGT
TAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGAAGCCCATCATCTTCGATCTGTTT
CCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTCTTTCCCTACTGCTTAGGGAGATAAG
ATCTGCAATTCAGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
Found at i:100866276 original size:61 final size:64
Alignment explanation
Indices: 100866159--100866283 Score: 177
Period size: 61 Copynumber: 2.0 Consensus size: 64
100866149 CCATGTATCT
* *
100866159 ATGCTTATGTCAAATGATTAGGATGCTATGATCGAAATTAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
* *
100866223 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATCAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
100866284 TTACTGTATA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
61 29 0.52
62 2 0.04
63 1 0.02
64 5 0.09
65 19 0.34
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATCAATCAAATGCTCCTAACTAAATGTG
Found at i:100867914 original size:7 final size:7
Alignment explanation
Indices: 100867896--100867941 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
100867886 ATGATCCCCC
100867896 CTTTTTT
1 CTTTTTT
100867903 CCTTTTTT
1 -CTTTTTT
100867911 C--TTTT
1 CTTTTTT
100867916 -TTTTTT
1 CTTTTTT
100867922 CTTTTTT
1 CTTTTTT
*
100867929 CTTTTCT
1 CTTTTTT
100867936 CTTTTT
1 CTTTTT
100867942 ATTGGGGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
6 4 0.12
7 18 0.55
8 7 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
CTTTTTT
Found at i:100867920 original size:18 final size:18
Alignment explanation
Indices: 100867897--100867933 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
100867887 TGATCCCCCC
100867897 TTTTTTCCTTTTTTCTTT
1 TTTTTTCCTTTTTTCTTT
*
100867915 TTTTTTTCTTTTTTCTTT
1 TTTTTTCCTTTTTTCTTT
100867933 T
1 T
100867934 CTCTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTTTCCTTTTTTCTTT
Found at i:100870620 original size:25 final size:25
Alignment explanation
Indices: 100870586--100870637 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
100870576 GGGAAAGTCT
100870586 AATGCAAATG-ATGCAATGCAATACA
1 AATGCAAATGCATGCAATG-AATACA
* *
100870611 AATGCAAATGCATGGAATGAATGCA
1 AATGCAAATGCATGCAATGAATACA
100870636 AA
1 AA
100870638 AGAAAGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AATGCAAATGCATGCAATGAATACA
Found at i:100877149 original size:14 final size:14
Alignment explanation
Indices: 100877130--100877159 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100877120 AATGTATCGC
100877130 AAAGAAAAAAAAAG
1 AAAGAAAAAAAAAG
*
100877144 AAAGAAAAATAAAG
1 AAAGAAAAAAAAAG
100877158 AA
1 AA
100877160 CACACAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAGAAAAAAAAAG
Found at i:100881859 original size:16 final size:17
Alignment explanation
Indices: 100881838--100881877 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
100881828 TTCTATATGG
*
100881838 ATTTTACT-TTTATTTT
1 ATTTTACTATATATTTT
100881854 ATTTTACTACTATATTTT
1 ATTTTACTA-TATATTTT
100881872 ATTTTA
1 ATTTTA
100881878 ATAAGAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
18 13 0.62
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTACTATATATTTT
Found at i:100882012 original size:57 final size:57
Alignment explanation
Indices: 100881930--100882040 Score: 213
Period size: 57 Copynumber: 1.9 Consensus size: 57
100881920 TCCACCACTC
*
100881930 TTCTTTTCAGATAAAACTTATTTAAAGACTCCATGTGTTGTAATTGCTCCTACTCTT
1 TTCTTTTCAGATAAAACTTATTTAAAGACTCCATGTGTAGTAATTGCTCCTACTCTT
100881987 TTCTTTTCAGATAAAACTTATTTAAAGACTCCATGTGTAGTAATTGCTCCTACT
1 TTCTTTTCAGATAAAACTTATTTAAAGACTCCATGTGTAGTAATTGCTCCTACT
100882041 AAGCTTTTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (57 bp):
TTCTTTTCAGATAAAACTTATTTAAAGACTCCATGTGTAGTAATTGCTCCTACTCTT
Found at i:100884405 original size:16 final size:16
Alignment explanation
Indices: 100884384--100884416 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
100884374 CGGTGAGAGA
100884384 ATAATTTTGTAATGAG
1 ATAATTTTGTAATGAG
100884400 ATAATTTTGTAATGAG
1 ATAATTTTGTAATGAG
100884416 A
1 A
100884417 AAAGGGATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (16 bp):
ATAATTTTGTAATGAG
Found at i:100887170 original size:87 final size:87
Alignment explanation
Indices: 100887024--100887198 Score: 350
Period size: 87 Copynumber: 2.0 Consensus size: 87
100887014 TCACGCTCAC
100887024 TGCACTAATTGTTGATACAAAAATCAAGTAAAGTGGATATGGTATTGGTCTTGTCTTGAGTTTTA
1 TGCACTAATTGTTGATACAAAAATCAAGTAAAGTGGATATGGTATTGGTCTTGTCTTGAGTTTTA
100887089 CCACTAAGGATATTGCTTAAAA
66 CCACTAAGGATATTGCTTAAAA
100887111 TGCACTAATTGTTGATACAAAAATCAAGTAAAGTGGATATGGTATTGGTCTTGTCTTGAGTTTTA
1 TGCACTAATTGTTGATACAAAAATCAAGTAAAGTGGATATGGTATTGGTCTTGTCTTGAGTTTTA
100887176 CCACTAAGGATATTGCTTAAAA
66 CCACTAAGGATATTGCTTAAAA
100887198 T
1 T
100887199 AAGGTGGAGA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (87 bp):
TGCACTAATTGTTGATACAAAAATCAAGTAAAGTGGATATGGTATTGGTCTTGTCTTGAGTTTTA
CCACTAAGGATATTGCTTAAAA
Found at i:100895182 original size:17 final size:17
Alignment explanation
Indices: 100895160--100895194 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
100895150 TCATTGAACC
*
100895160 ATTTTCAAGTTATTTTT
1 ATTTTCAAGCTATTTTT
100895177 ATTTTCAAGCTATTTTT
1 ATTTTCAAGCTATTTTT
100895194 A
1 A
100895195 ACTAATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.60
Consensus pattern (17 bp):
ATTTTCAAGCTATTTTT
Found at i:100898617 original size:3 final size:3
Alignment explanation
Indices: 100898609--100898660 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
100898599 GTCGTACTTG
*
100898609 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
100898657 TAT T
1 TAT T
100898661 TGAGGAATGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:100900085 original size:19 final size:19
Alignment explanation
Indices: 100900061--100900102 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
100900051 CCAAAAATCT
100900061 GTTTTTGTTGAAGTTTTGG
1 GTTTTTGTTGAAGTTTTGG
* *
100900080 GTTTTTGTTGAATTTTTTG
1 GTTTTTGTTGAAGTTTTGG
100900099 GTTT
1 GTTT
100900103 CTATTGAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.26, T:0.64
Consensus pattern (19 bp):
GTTTTTGTTGAAGTTTTGG
Found at i:100900109 original size:19 final size:19
Alignment explanation
Indices: 100900068--100900111 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
100900058 TCTGTTTTTG
* * *
100900068 TTGAAGTTTTGGGTTTTTG
1 TTGAATTTTTGGGTTTCTA
*
100900087 TTGAATTTTTTGGTTTCTA
1 TTGAATTTTTGGGTTTCTA
100900106 TTGAAT
1 TTGAAT
100900112 GGAAGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.16, C:0.02, G:0.23, T:0.59
Consensus pattern (19 bp):
TTGAATTTTTGGGTTTCTA
Found at i:100902990 original size:3 final size:3
Alignment explanation
Indices: 100902984--100903011 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
100902974 GATACTAATA
100902984 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
100903012 GTGGCAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:100907726 original size:24 final size:24
Alignment explanation
Indices: 100907694--100907745 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
100907684 TCAGTTACCT
* *
100907694 CCAATGCCAATGATCCCAAC-TCTG
1 CCAATGCCAACGATACCAACAT-TG
100907718 CCAATGCCAACGATACCAACATTG
1 CCAATGCCAACGATACCAACATTG
100907742 CCAA
1 CCAA
100907746 CGACTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.35, C:0.37, G:0.12, T:0.17
Consensus pattern (24 bp):
CCAATGCCAACGATACCAACATTG
Found at i:100909249 original size:58 final size:56
Alignment explanation
Indices: 100909187--100909326 Score: 165
Period size: 58 Copynumber: 2.4 Consensus size: 56
100909177 TATAGTTTCT
* *
100909187 TTTTTTTTAATTTGGTACCTAAATCTTTTTT-TTCCAATTTGATACTTGAACCTAACA
1 TTTTTTTTAATTTGGTACCTAAAT-TTTTTTGGTCCAAATTGATACTTGAACCTAA-A
* * *
100909244 CTTTTTCTTAATTTGGTACCTAAATTTTTTTGGGTCCAAATTGATACTTGAACTTGAA
1 -TTTTTTTTAATTTGGTACCTAAATTTTTTT-GGTCCAAATTGATACTTGAACCTAAA
100909302 TTTTTTTCCCTAATTTGGTACCTAA
1 TTTTTTT---TAATTTGGTACCTAA
100909327 GCTTGTTTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
57 12 0.17
58 24 0.34
59 20 0.28
60 15 0.21
ACGTcount: A:0.25, C:0.16, G:0.10, T:0.49
Consensus pattern (56 bp):
TTTTTTTTAATTTGGTACCTAAATTTTTTTGGTCCAAATTGATACTTGAACCTAAA
Found at i:100909776 original size:57 final size:60
Alignment explanation
Indices: 100909706--100909841 Score: 163
Period size: 61 Copynumber: 2.3 Consensus size: 60
100909696 AAATATTTGA
* ***
100909706 CAAGTTCAAGTACCAAATCGAA-CAAAAAAA-ATTGGGTACCAAATTAA-AAAAAAGA-GT
1 CAAGTTTAAGTACCAAATCGAACCAAAAAAAGATCAAGTACCAAATTAAGAAAAAA-ATGT
* *
100909763 CAAGTTTAGGTACCAAATTGAACCCAAAAAAAGATCAAGTACCAAATTAAGAAAAAAATGT
1 CAAGTTTAAGTACCAAATCGAA-CCAAAAAAAGATCAAGTACCAAATTAAGAAAAAAATGT
*
100909824 CAAGTTTAAGTATCAAAT
1 CAAGTTTAAGTACCAAAT
100909842 TAAAAAAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 19 0.29
59 8 0.12
60 15 0.23
61 24 0.36
ACGTcount: A:0.52, C:0.14, G:0.13, T:0.21
Consensus pattern (60 bp):
CAAGTTTAAGTACCAAATCGAACCAAAAAAAGATCAAGTACCAAATTAAGAAAAAAATGT
Found at i:100909841 original size:32 final size:31
Alignment explanation
Indices: 100909741--100909872 Score: 126
Period size: 31 Copynumber: 4.3 Consensus size: 31
100909731 AAAAAATTGG
* *
100909741 GTACCAAATTAAAAAAAAGAGTCAAGTTTAG
1 GTACCAAATTAAAAAAAAAAGTCAAGTTTAA
*** * *
100909772 GTACCAAATTGAACCCAAAAA---AAGATCAA
1 GTACCAAATT-AAAAAAAAAAGTCAAGTTTAA
*
100909801 GTACCAAATTAAGAAAAAAATGTCAAGTTTAA
1 GTACCAAATTAA-AAAAAAAAGTCAAGTTTAA
* * *
100909833 GTATCAAATTAAAAAAAAAAGTCAAGTTCAG
1 GTACCAAATTAAAAAAAAAAGTCAAGTTTAA
100909864 GTACCAAAT
1 GTACCAAAT
100909873 ATTATATTAA
Statistics
Matches: 78, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.03
29 19 0.24
31 34 0.44
32 23 0.29
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (31 bp):
GTACCAAATTAAAAAAAAAAGTCAAGTTTAA
Found at i:100911567 original size:24 final size:24
Alignment explanation
Indices: 100911540--100911609 Score: 131
Period size: 24 Copynumber: 2.9 Consensus size: 24
100911530 CGAAGGGAAA
*
100911540 CCAGGAAAGCCAGATGCTGAAGAG
1 CCAGGAAAGCCAGGTGCTGAAGAG
100911564 CCAGGAAAGCCAGGTGCTGAAGAG
1 CCAGGAAAGCCAGGTGCTGAAGAG
100911588 CCAGGAAAGCCAGGTGCTGAAG
1 CCAGGAAAGCCAGGTGCTGAAG
100911610 GAGGGACGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.34, C:0.21, G:0.36, T:0.09
Consensus pattern (24 bp):
CCAGGAAAGCCAGGTGCTGAAGAG
Found at i:100913754 original size:18 final size:19
Alignment explanation
Indices: 100913716--100913755 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
100913706 ATTTATAAAT
**
100913716 ATAAAATTATTAATATTAA
1 ATAAAATTATTAATACAAA
100913735 ATAAAATT-TTAATACAAA
1 ATAAAATTATTAATACAAA
100913753 ATA
1 ATA
100913756 TTCATGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAAAATTATTAATACAAA
Done.