Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 34 of 345
Found at i:10362603 original size:51 final size:51
Alignment explanation
Indices: 10362540--10362699 Score: 266
Period size: 51 Copynumber: 3.1 Consensus size: 51
10362530 TGATACAAAT
* * *
10362540 TGATAATAGGTTAGGTAAATGTTCCTTGATAATAGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCA
10362591 TGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATG-TTCA
* *
10362643 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCA
10362694 TGATAA
1 TGATAA
10362700 GAATTTCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
51 54 0.52
52 49 0.48
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCA
Found at i:10362633 original size:77 final size:77
Alignment explanation
Indices: 10362540--10362699 Score: 277
Period size: 77 Copynumber: 2.1 Consensus size: 77
10362530 TGATACAAAT
*
10362540 TGATAATAGGTTAGGTAAATGTTCCTTGATAATAGGTTAGGTAAATG-TTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
10362604 GGTAAATGTTTCA
66 GGTAAAT-TTTCA
* *
10362617 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
10362682 GGTAAATTTTCA
66 GGTAAATTTTCA
10362694 TGATAA
1 TGATAA
10362700 GAATTTCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
77 55 0.70
78 24 0.30
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (77 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
GGTAAATTTTCA
Found at i:10364211 original size:26 final size:26
Alignment explanation
Indices: 10364182--10364234 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10364172 TTTACAGTTT
10364182 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
10364208 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
10364234 T
1 T
10364235 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:10364727 original size:136 final size:137
Alignment explanation
Indices: 10364482--10364767 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
10364472 GAGTAGTCTC
10364482 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
10364547 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
10364612 ACTGTTA
131 ACTATTA
*
10364619 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
10364683 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
10364748 ACTATTA
131 ACTATTA
**
10364755 CCTGAATGGGCTT
1 CCCAAATGGGCTT
10364768 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Found at i:10367967 original size:35 final size:36
Alignment explanation
Indices: 10367891--10367985 Score: 115
Period size: 35 Copynumber: 2.7 Consensus size: 36
10367881 TTTTTTAGGT
* *
10367891 TTTTTTTAC-AATAATAATAACTAACAATAATTATA
1 TTTTTTTACTAACAATAATAACTAACAATAATAATA
** *
10367926 GCTTTTTACTAACAATAATAAC-AATAATAATAATA
1 TTTTTTTACTAACAATAATAACTAACAATAATAATA
*
10367961 TTTTTTTACTAACAATATTAA-TAAC
1 TTTTTTTACTAACAATAATAACTAAC
10367986 TGACAACAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
35 38 0.78
36 11 0.22
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.41
Consensus pattern (36 bp):
TTTTTTTACTAACAATAATAACTAACAATAATAATA
Found at i:10368105 original size:15 final size:16
Alignment explanation
Indices: 10368075--10368144 Score: 54
Period size: 15 Copynumber: 4.2 Consensus size: 16
10368065 AAAAATTATA
*
10368075 CCTTCTTTTTTCCTTCT
1 CCTTCTATTTT-CTTCT
10368092 CCTTCT-TTTTCTTCCTT
1 CCTTCTATTTTCTT-C-T
**
10368109 CTCTTCTCCTTTCTT-T
1 C-CTTCTATTTTCTTCT
*
10368125 CCTTTTATTTTCTTCT
1 CCTTCTATTTTCTTCT
10368141 CCTT
1 CCTT
10368145 GCTGCTGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
15 13 0.30
16 12 0.27
17 8 0.18
18 5 0.11
19 6 0.14
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.64
Consensus pattern (16 bp):
CCTTCTATTTTCTTCT
Found at i:10368108 original size:19 final size:18
Alignment explanation
Indices: 10368075--10368115 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10368065 AAAAATTATA
10368075 CCTTC-TTTTTTCCTTCT
1 CCTTCTTTTTTTCCTTCT
10368092 CCTTCTTTTTCTTCCTTCT
1 CCTTCTTTTT-TTCCTTCT
10368111 -CTTCT
1 CCTTCT
10368116 CCTTTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 9 0.41
19 8 0.36
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (18 bp):
CCTTCTTTTTTTCCTTCT
Found at i:10368121 original size:19 final size:19
Alignment explanation
Indices: 10368075--10368128 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
10368065 AAAAATTATA
10368075 CCTTCT-TTT-TTCCTTCT
1 CCTTCTCTTTCTTCCTTCT
*
10368092 CCTTCTTTTTCTTCCTTCT
1 CCTTCTCTTTCTTCCTTCT
10368111 -CTTCTCCTTTCTTTCCTT
1 CCTTCT-CTTTC-TTCCTT
10368129 TTATTTTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
17 6 0.19
18 8 0.25
19 12 0.38
20 6 0.19
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (19 bp):
CCTTCTCTTTCTTCCTTCT
Found at i:10368306 original size:18 final size:18
Alignment explanation
Indices: 10368262--10368306 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
10368252 CAATATATAT
10368262 TTTTTTTTTCGTTTTCAG
1 TTTTTTTTTCGTTTTCAG
* *
10368280 CTTTTTTTTCTTTTTCAG
1 TTTTTTTTTCGTTTTCAG
10368298 TTTTTTTTT
1 TTTTTTTTT
10368307 ACTGTGCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.04, C:0.11, G:0.07, T:0.78
Consensus pattern (18 bp):
TTTTTTTTTCGTTTTCAG
Found at i:10368804 original size:25 final size:27
Alignment explanation
Indices: 10368767--10368822 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
10368757 CAGGACTCTT
*
10368767 TTTTTATATTAAAATA-TATATTTTTA
1 TTTTTATAATAAAATATTATATTTTTA
*
10368793 TTTTTA-AATAAAATATTATTTTTTTA
1 TTTTTATAATAAAATATTATATTTTTA
10368819 TTTT
1 TTTT
10368823 CGGATCAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTTATAATAAAATATTATATTTTTA
Found at i:10369760 original size:16 final size:17
Alignment explanation
Indices: 10369730--10369762 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10369720 TTAATAAAAA
*
10369730 TAAAAATATTTTATTTT
1 TAAAAATATTATATTTT
10369747 TAAAAA-ATTATATTTT
1 TAAAAATATTATATTTT
10369763 AATATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TAAAAATATTATATTTT
Found at i:10369772 original size:21 final size:20
Alignment explanation
Indices: 10369712--10369773 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
10369702 ATATAAATTT
10369712 AAATATTTTTAATA-AAAATAA
1 AAATA-TTTTAATATAAAA-AA
* *
10369733 AAATATTTTATTTTTAAAAAA
1 AAATATTTTA-ATATAAAAAA
**
10369754 TTATATTTTAATATAAAAAA
1 AAATATTTTAATATAAAAAA
10369774 GAGTCCCACC
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
20 13 0.39
21 16 0.48
22 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATATTTTAATATAAAAAA
Found at i:10371474 original size:38 final size:38
Alignment explanation
Indices: 10371432--10371507 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
10371422 TGGTGCTCAT
10371432 ATAATTTGTAAAAGACAGATAACTTATAGGGAACTGTA
1 ATAATTTGTAAAAGACAGATAACTTATAGGGAACTGTA
10371470 ATAATTTGTAAAAGACAGATAACTTATAGGGAACTGTA
1 ATAATTTGTAAAAGACAGATAACTTATAGGGAACTGTA
10371508 CTTTCGGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (38 bp):
ATAATTTGTAAAAGACAGATAACTTATAGGGAACTGTA
Found at i:10379129 original size:25 final size:26
Alignment explanation
Indices: 10379101--10379159 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
10379091 TCGAATTACA
10379101 ATTT-AATAATAAATATTTTTATT-TT
1 ATTTAAAT-ATAAATATTTTTATTATT
* *
10379126 ATTTAAATTTAATTATTTTTATTATT
1 ATTTAAATATAAATATTTTTATTATT
10379152 -TTTAAATA
1 ATTTAAATA
10379160 GTTCTAACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
ATTTAAATATAAATATTTTTATTATT
Found at i:10384375 original size:2 final size:2
Alignment explanation
Indices: 10384368--10384400 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10384358 GTGAAAGATC
*
10384368 AG AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10384401 CTACAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.45, T:0.03
Consensus pattern (2 bp):
AG
Found at i:10390008 original size:46 final size:46
Alignment explanation
Indices: 10389946--10390395 Score: 702
Period size: 46 Copynumber: 10.0 Consensus size: 46
10389936 TTTGACATGA
* * * * * *
10389946 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
10389992 TTCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10390038 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10390084 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10390130 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10390176 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10390222 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10390268 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10390314 TGCCATGGTATCTTTCAACCATGGTCTT-C-CA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10390352 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
10390396 AGAGTATACT
Statistics
Matches: 376, Mismatches: 19, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
38 34 0.09
39 1 0.00
40 2 0.01
41 1 0.00
43 1 0.00
44 2 0.01
45 5 0.01
46 330 0.88
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:10393451 original size:3 final size:3
Alignment explanation
Indices: 10393445--10393497 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
10393435 CATTACTACT
* *
10393445 TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TCA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
10393491 TCA TTA T
1 TTA TTA T
10393498 ACTTATACTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:10393465 original size:16 final size:16
Alignment explanation
Indices: 10393406--10393491 Score: 72
Period size: 16 Copynumber: 5.4 Consensus size: 16
10393396 ATTTTCTTAC
*
10393406 TATTATTTATTATCAT
1 TATTATTTATTATTAT
10393422 T-TCT-TCTTATT-TTCAT
1 TAT-TAT-TTATTATT-AT
*
10393438 TACTACTTTATTATTAT
1 TATTA-TTTATTATTAT
10393455 TATTATTTATTATTAT
1 TATTATTTATTATTAT
* *
10393471 TATTA-TCATTATTAC
1 TATTATTTATTATTAT
10393486 TATTAT
1 TATTAT
10393492 CATTATACTT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
15 16 0.28
16 27 0.47
17 11 0.19
18 3 0.05
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTATTTATTATTAT
Found at i:10393895 original size:14 final size:16
Alignment explanation
Indices: 10393871--10393926 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 16
10393861 TTGTTTACTT
10393871 TATTAT-TATTACTAC
1 TATTATATATTACTAC
* *
10393886 TATTA-A-ATTAGTAT
1 TATTATATATTACTAC
*
10393900 TATTATATTTTACTAC
1 TATTATATATTACTAC
10393916 TATTAT-TATTA
1 TATTATATATTA
10393927 TTTATATTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
14 11 0.34
15 10 0.31
16 11 0.34
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (16 bp):
TATTATATATTACTAC
Found at i:10393919 original size:19 final size:21
Alignment explanation
Indices: 10393897--10393941 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10393887 ATTAAATTAG
10393897 TATTATTA-TATTT-TACTAC
1 TATTATTATTATTTATACTAC
*
10393916 TATTATTATTATTTATATTAC
1 TATTATTATTATTTATACTAC
10393937 TATTA
1 TATTA
10393942 GTTTTATCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 5 0.22
21 10 0.43
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATTATTATTTATACTAC
Found at i:10408145 original size:3 final size:3
Alignment explanation
Indices: 10408139--10408194 Score: 76
Period size: 3 Copynumber: 18.3 Consensus size: 3
10408129 CATTACTACT
* *
10408139 TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA TCA TTA TTA CTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
10408185 TTA TCA TTA T
1 TTA TTA TTA T
10408195 ACTTATACTC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:10408159 original size:16 final size:16
Alignment explanation
Indices: 10408100--10408188 Score: 76
Period size: 16 Copynumber: 5.4 Consensus size: 16
10408090 ATTTTCTTAC
*
10408100 TATTATTTATTATCAT
1 TATTATTTATTATTAT
10408116 T-TCT-TCTTATT-TTCAT
1 TAT-TAT-TTATTATT-AT
*
10408132 TACTACTTTATTATTAT
1 TATTA-TTTATTATTAT
10408149 TATTATTTATTATTAT
1 TATTATTTATTATTAT
*
10408165 TATTATTATCATTATTAC
1 TATTATT-T-ATTATTAT
10408183 TATTAT
1 TATTAT
10408189 CATTATACTT
Statistics
Matches: 60, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
15 3 0.05
16 29 0.48
17 12 0.20
18 16 0.27
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTATTTATTATTAT
Found at i:10408589 original size:14 final size:16
Alignment explanation
Indices: 10408565--10408620 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 16
10408555 TTGTTTACTT
10408565 TATTAT-TATTACTAC
1 TATTATATATTACTAC
* *
10408580 TATTA-A-ATTAGTAT
1 TATTATATATTACTAC
*
10408594 TATTATATTTTACTAC
1 TATTATATATTACTAC
10408610 TATTAT-TATTA
1 TATTATATATTA
10408621 TTTATATTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
14 11 0.34
15 10 0.31
16 11 0.34
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (16 bp):
TATTATATATTACTAC
Found at i:10408613 original size:19 final size:21
Alignment explanation
Indices: 10408591--10408635 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10408581 ATTAAATTAG
10408591 TATTATTA-TATTT-TACTAC
1 TATTATTATTATTTATACTAC
*
10408610 TATTATTATTATTTATATTAC
1 TATTATTATTATTTATACTAC
10408631 TATTA
1 TATTA
10408636 GTTTTATCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 5 0.22
21 10 0.43
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTATTATTATTTATACTAC
Found at i:10409798 original size:19 final size:18
Alignment explanation
Indices: 10409750--10409798 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
10409740 ATTTATAAGA
10409750 AAATATATAAAACAAATTT
1 AAAT-TATAAAACAAATTT
* * *
10409769 AAAATACAAAAGAAATTAT
1 AAATTATAAAACAAATT-T
10409788 AAATTATAAAA
1 AAATTATAAAA
10409799 ATTTATGTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (18 bp):
AAATTATAAAACAAATTT
Found at i:10410474 original size:31 final size:31
Alignment explanation
Indices: 10410414--10410484 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
10410404 GAGAGTGGTT
*
10410414 AAAATAGAAATGATCTAAAACGTGAGTGACC
1 AAAATAGAAATGATCTAAAACATGAGTGACC
* ** *
10410445 AAAATAGAACTGATCTAAAACATTTGTGACT
1 AAAATAGAAATGATCTAAAACATGAGTGACC
10410476 AAAAT-GAAA
1 AAAATAGAAA
10410485 ATTTTCATAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (31 bp):
AAAATAGAAATGATCTAAAACATGAGTGACC
Found at i:10411022 original size:15 final size:16
Alignment explanation
Indices: 10410988--10411036 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 16
10410978 TATGTTGTAA
10410988 ATATGTATCAAATATG
1 ATATGTATCAAATATG
* *
10411004 ATATGTA-CATATTTG
1 ATATGTATCAAATATG
10411019 ATA--TATCAAATATG
1 ATATGTATCAAATATG
10411033 ATAT
1 ATAT
10411037 ATACACAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
13 2 0.07
14 9 0.33
15 9 0.33
16 7 0.26
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (16 bp):
ATATGTATCAAATATG
Found at i:10414114 original size:35 final size:34
Alignment explanation
Indices: 10414068--10414171 Score: 165
Period size: 35 Copynumber: 3.0 Consensus size: 34
10414058 CACTTCCCTC
10414068 TTCCCACTCTCCCATGCTGTCTGCTACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGC-ACCAGCACCA
10414103 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTG-CACCAGCACCA
* *
10414138 CTCCCACTC-CCCATGCTGTCTGCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCACCAGCACCA
10414171 T
1 T
10414172 CACACACCCC
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
33 10 0.15
34 13 0.20
35 41 0.63
36 1 0.02
ACGTcount: A:0.16, C:0.48, G:0.12, T:0.23
Consensus pattern (34 bp):
TTCCCACTCTCCCATGCTGTCTGCACCAGCACCA
Found at i:10414616 original size:33 final size:32
Alignment explanation
Indices: 10414571--10414648 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 32
10414561 AAAGAGGGGA
*
10414571 AGCAAAAAAAAAAAATCCAGCAAAAAA-TTCC
1 AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
**
10414602 AGCACCAAAAAAAAATTTCCAGAAAAAAATTTCC
1 AGCA--AAAAAAAAAAATCCAGAAAAAAATTTCC
10414636 AGCAAAAAAAAAA
1 AGCAAAAAAAAAA
10414649 CCAAAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
31 4 0.10
32 9 0.22
33 20 0.49
34 8 0.20
ACGTcount: A:0.64, C:0.18, G:0.06, T:0.12
Consensus pattern (32 bp):
AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
Found at i:10415529 original size:2 final size:2
Alignment explanation
Indices: 10415459--10415513 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
10415449 ATCATTTCTA
* * *
10415459 AT AT GT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
10415499 AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT
10415514 GCCATTAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:10427244 original size:46 final size:46
Alignment explanation
Indices: 10427191--10427365 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
10427181 TATTTGGGCA
*
10427191 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
10427237 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
10427284 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
10427330 CCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10427366 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 4 0.04
45 15 0.14
46 52 0.47
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:10427346 original size:93 final size:92
Alignment explanation
Indices: 10427187--10427357 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
10427177 GGGATATTTG
* * *
10427187 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10427252 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCC-AGTTCGTGAGATGTAACTA
*
10427280 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
10427345 TTGAGTCCAGTTC
66 TTGAGTCCAGTTC
10427358 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 5 0.07
93 69 0.93
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAGTTCGTGAGATGTAACTA
Found at i:10430574 original size:70 final size:70
Alignment explanation
Indices: 10430493--10431081 Score: 971
Period size: 70 Copynumber: 8.2 Consensus size: 70
10430483 CAAGTGACAG
* *
10430493 AAAATCAACTCACATTGCGATAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430558 GTTTC
66 GTTTC
10430563 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430628 GTTTC
66 GTTTC
*
10430633 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430698 GTTTC
66 GTTTC
*
10430703 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
10430768 AATTTATGTTTC
59 AATTTATGTTTC
*
10430780 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430845 GTTTC
66 GTTTC
*
10430850 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430915 GTTTC
66 GTTTC
*
10430920 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
10430985 AATTTATGTTTC
59 AATTTATGTTTC
*
10430997 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10431062 GTTTC
66 GTTTC
10431067 AAAAATCAACTCATA
1 -AAAATCAACTCATA
10431082 GGTGAGTTGA
Statistics
Matches: 491, Mismatches: 13, Indels: 29
0.92 0.02 0.05
Matches are distributed among these distances:
70 335 0.68
71 18 0.04
72 2 0.00
75 2 0.00
76 4 0.01
77 130 0.26
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:10430779 original size:77 final size:77
Alignment explanation
Indices: 10430687--10431059 Score: 603
Period size: 77 Copynumber: 5.0 Consensus size: 77
10430677 GTTGAGGTAA
*
10430687 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
10430752 GGTAATTTCAAT
66 GGTAATTTCAAT
*
10430764 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
10430829 GG-----T-AA-
66 GGTAATTTCAAT
*
10430834 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
10430899 GG-----T-AA-
66 GGTAATTTCAAT
*
10430904 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
10430969 GGTAATTTCAAT
66 GGTAATTTCAAT
*
10430981 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
10431046 GGTAATTTCAAT
66 GGTAATTTCAAT
10431058 TT
1 TT
10431060 ATGTTTCAAA
Statistics
Matches: 281, Mismatches: 8, Indels: 14
0.93 0.03 0.05
Matches are distributed among these distances:
70 133 0.47
71 2 0.01
72 1 0.00
75 1 0.00
76 2 0.01
77 142 0.51
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
GGTAATTTCAAT
Found at i:10430861 original size:217 final size:217
Alignment explanation
Indices: 10430493--10431081 Score: 1084
Period size: 217 Copynumber: 2.7 Consensus size: 217
10430483 CAAGTGACAG
* * *
10430493 AAAATCAACTCACATTGCGATAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
*
10430551 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
10430616 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
10430681 AGGTAATTTCAATTTATGTTTC
196 AGGTAATTTCAATTTATGTTTC
10430703 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
10430768 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
10430833 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
10430898 AGGTAATTTCAATTTATGTTTC
196 AGGTAATTTCAATTTATGTTTC
10430920 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
10430985 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
10431050 ATTTCAATTTATGTTTCAAAAATCAACTCATA
131 ATTTCAATTTATGTTTC-AAAATCAACTCATA
10431082 GGTGAGTTGA
Statistics
Matches: 367, Mismatches: 4, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 48 0.13
215 1 0.00
216 2 0.01
217 302 0.82
218 14 0.04
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (217 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
AGGTAATTTCAATTTATGTTTC
Found at i:10430866 original size:147 final size:140
Alignment explanation
Indices: 10430493--10431081 Score: 971
Period size: 147 Copynumber: 4.1 Consensus size: 140
10430483 CAAGTGACAG
* *
10430493 AAAATCAACTCACATTGCGATAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
10430558 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
10430623 TTTATGTTTC
131 TTTATGTTTC
*
10430633 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
10430698 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA
10430763 TTTTCAATTTATGTTTC
125 -TTTCAATTTATGTTTC
*
10430780 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
10430845 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
10430910 TTTATGTTTC
131 TTTATGTTTC
*
10430920 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
*
10430985 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
59 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
10431050 ATTTCAATTTATGTTTC
124 ATTTCAATTTATGTTTC
10431067 AAAAATCAACTCATA
1 -AAAATCAACTCATA
10431082 GGTGAGTTGA
Statistics
Matches: 422, Mismatches: 12, Indels: 22
0.93 0.03 0.05
Matches are distributed among these distances:
140 182 0.43
141 2 0.00
142 1 0.00
145 2 0.00
146 4 0.01
147 217 0.51
148 14 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (140 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATGTTTC
Found at i:10431135 original size:147 final size:142
Alignment explanation
Indices: 10430514--10431182 Score: 684
Period size: 147 Copynumber: 4.6 Consensus size: 142
10430504 ACATTGCGAT
* *
10430514 AGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAAC
1 AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAAC
10430572 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
66 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
10430637 TCAACTCATATTGCGAG
131 TCAACTCA-ATT----G
* * *
10430654 AGGTGAGTTAAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAAC
1 AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAAC
*
10430712 TCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATTTATGT
66 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTCAATTTATGT
*
10430777 TTCAAAATCAACTCATATGGCGAG
124 TTCAAAATCAACTCA-AT----TG
* *
10430801 AGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAAC
1 AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAAC
*
10430859 TCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
66 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
10430924 TCAACTCATATTGCGAG
131 TCAACTCA-ATT----G
* *
10430941 AGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATTTATGTTTCAAAATCAAC
1 AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAAC
*
10431006 TCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
66 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTC-AAA
10431071 ATCAACTC-A-T-
130 ATCAACTCAATTG
**** * * *
10431081 AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTCTCTACTTTCCAATTCCTGTTTTTC
1 AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCA------A-TTTCCAATT--TATGTTTC
*
10431146 AAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
57 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
10431183 GTTAATTTCT
Statistics
Matches: 475, Mismatches: 21, Indels: 56
0.86 0.04 0.10
Matches are distributed among these distances:
140 191 0.40
141 2 0.00
142 1 0.00
145 3 0.01
146 9 0.02
147 218 0.46
148 11 0.02
149 6 0.01
150 34 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (142 bp):
AGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAAC
TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAAA
TCAACTCAATTG
Found at i:10431224 original size:54 final size:52
Alignment explanation
Indices: 10431132--10431286 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 52
10431122 TCTACTTTCC
* *
10431132 AATTCCTGTTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
* *
10431186 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
**
10431237 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
10431286 A
1 A
10431287 GGTCATATGT
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.43
49 4 0.04
51 1 0.01
54 44 0.49
55 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:10432039 original size:35 final size:35
Alignment explanation
Indices: 10431993--10432098 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
10431983 CACTTGCCTC
10431993 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
10432028 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
10432063 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
10432098 T
1 T
10432099 CACACACCCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:10432544 original size:33 final size:32
Alignment explanation
Indices: 10432499--10432576 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 32
10432489 AAAGAGGGGA
*
10432499 AGCAAAAAAAAAAAATCCAGCAAAAAA-TTCC
1 AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
**
10432530 AGCACCAAAAAAAAATTTCCAGAAAAAAATTTCC
1 AGCA--AAAAAAAAAAATCCAGAAAAAAATTTCC
10432564 AGCAAAAAAAAAA
1 AGCAAAAAAAAAA
10432577 CCAAAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
31 4 0.10
32 9 0.22
33 20 0.49
34 8 0.20
ACGTcount: A:0.64, C:0.18, G:0.06, T:0.12
Consensus pattern (32 bp):
AGCAAAAAAAAAAAATCCAGAAAAAAATTTCC
Found at i:10433424 original size:22 final size:23
Alignment explanation
Indices: 10433406--10433457 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
10433396 CTAATATGTA
10433406 TATATATATATATATATATTATG
1 TATATATATATATATATATTATG
*
10433429 TGTAT-TATATATATATATTATG
1 TATATATATATATATATATTATG
10433451 TATATAT
1 TATATAT
10433458 GCCATTAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (23 bp):
TATATATATATATATATATTATG
Found at i:10433473 original size:2 final size:2
Alignment explanation
Indices: 10433399--10433457 Score: 61
Period size: 2 Copynumber: 31.0 Consensus size: 2
10433389 ATCATTTCTA
* * *
10433399 AT AT GT AT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
10433439 AT AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
10433458 GCCATTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
1 3 0.06
2 45 0.94
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:10436110 original size:2 final size:2
Alignment explanation
Indices: 10436068--10436099 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10436058 CCCATCATAA
10436068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10436100 GATTTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10437913 original size:18 final size:19
Alignment explanation
Indices: 10437892--10437930 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
10437882 AAGATTAAAA
10437892 TTAAAAATAAATATTT-TT
1 TTAAAAATAAATATTTATT
*
10437910 TTAAAAATCAATATTTATT
1 TTAAAAATAAATATTTATT
10437929 TT
1 TT
10437931 TATTAGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAAAAATAAATATTTATT
Found at i:10439254 original size:20 final size:20
Alignment explanation
Indices: 10439229--10439269 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
10439219 ATAAACCCCC
10439229 TTCATGTTTTGA-TGTTGTTT
1 TTCATGTTTT-ATTGTTGTTT
10439249 TTCATGTTTTATTGTTGTTT
1 TTCATGTTTTATTGTTGTTT
10439269 T
1 T
10439270 CCCACTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.10, C:0.05, G:0.17, T:0.68
Consensus pattern (20 bp):
TTCATGTTTTATTGTTGTTT
Found at i:10442317 original size:15 final size:15
Alignment explanation
Indices: 10442297--10442327 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10442287 ATGCAAACCA
10442297 TCACTCTCTGAAGCC
1 TCACTCTCTGAAGCC
*
10442312 TCACTCTCTGGAGCC
1 TCACTCTCTGAAGCC
10442327 T
1 T
10442328 TCAAGGGTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29
Consensus pattern (15 bp):
TCACTCTCTGAAGCC
Found at i:10446936 original size:25 final size:22
Alignment explanation
Indices: 10446861--10446937 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
10446851 TAATGAACAC
* *
10446861 AGAGCACTGAA-GTGCTATACAG
1 AGAGCAC-GAATGTGCTAAATAG
*
10446883 AGAGGACGAATGTGCTAAATAG
1 AGAGCACGAATGTGCTAAATAG
*
10446905 AGAGCACTAATGTGCTAATAATTAG
1 AGAGCACGAATGTGCT-A-AA-TAG
10446930 AGAGCACG
1 AGAGCACG
10446938 CTAAGGTTCC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.07
22 29 0.64
23 1 0.02
24 2 0.04
25 10 0.22
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.19
Consensus pattern (22 bp):
AGAGCACGAATGTGCTAAATAG
Found at i:10447076 original size:2 final size:2
Alignment explanation
Indices: 10447064--10447110 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
10447054 ATTTCACATT
*
10447064 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T- TCA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
10447105 TA TA TA
1 TA TA TA
10447111 CCAATTCAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:10447889 original size:5 final size:5
Alignment explanation
Indices: 10447872--10447909 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
10447862 TTACCTATTT
10447872 ATATA ATAT- ATATA ATATA ATATA ATAT- ATAATA ATAT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATAT
10447910 TCTTATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 6 0.20
5 22 0.73
6 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:10447896 original size:10 final size:9
Alignment explanation
Indices: 10447871--10447909 Score: 60
Period size: 10 Copynumber: 4.1 Consensus size: 9
10447861 TTTACCTATT
10447871 TATATAATA
1 TATATAATA
10447880 TATATAATA
1 TATATAATA
10447889 TAATATAATA
1 T-ATATAATA
10447899 TATAATAATA
1 TAT-ATAATA
10447909 T
1 T
10447910 TCTTATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 12 0.43
10 16 0.57
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TATATAATA
Found at i:10450107 original size:15 final size:15
Alignment explanation
Indices: 10450066--10450109 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
10450056 TATTGAAAAT
*
10450066 ATATATACATAATA-T
1 ATATATACAT-ATACG
*
10450081 ATATAAACATATACG
1 ATATATACATATACG
10450096 ATATATACATATAC
1 ATATATACATATAC
10450110 ATTAGAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 3 0.12
15 22 0.88
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (15 bp):
ATATATACATATACG
Found at i:10450111 original size:21 final size:21
Alignment explanation
Indices: 10450068--10450111 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
10450058 TTGAAAATAT
*
10450068 ATATACATAATATATATAAAC
1 ATATACATAATATACATAAAC
*
10450089 ATATACGAT-ATATACATATAC
1 ATATAC-ATAATATACATAAAC
10450110 AT
1 AT
10450112 TAGAAATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (21 bp):
ATATACATAATATACATAAAC
Found at i:10450480 original size:17 final size:17
Alignment explanation
Indices: 10450447--10450480 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10450437 TAATGTTTCA
*
10450447 TAAATATATAAATATAT
1 TAAATATATAAACATAT
*
10450464 TAAATATATACACATAT
1 TAAATATATAAACATAT
10450481 ATGTATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATATATAAACATAT
Found at i:10452498 original size:102 final size:102
Alignment explanation
Indices: 10452313--10452498 Score: 291
Period size: 102 Copynumber: 1.8 Consensus size: 102
10452303 ATGAATTAAA
* * * **
10452313 ACAGAAATTGGAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
1 ACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGA
*
10452378 TTTTTGAAAAGTAAAAATTAAAAACAGAGTTTGAAAG
66 TTTTTGAAAAGCAAAAATTAAAAACAGAGTTTGAAAG
* *
10452415 ACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGA
1 ACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGA
*
10452480 TTTTTGAAAAGCAGAAATT
66 TTTTTGAAAAGCAAAAATT
10452499 GAAATTACCT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 75 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (102 bp):
ACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGA
TTTTTGAAAAGCAAAAATTAAAAACAGAGTTTGAAAG
Found at i:10452552 original size:73 final size:75
Alignment explanation
Indices: 10452407--10452562 Score: 210
Period size: 73 Copynumber: 2.1 Consensus size: 75
10452397 AAAAACAGAG
* *
10452407 TTTG-AAAGACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCAAAAT
1 TTTGAAAAGACAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCAAAAT
10452471 ATGAGTTGATT
65 ATGAGTTGATT
* * * **
10452482 TTTGAAAAG-CAGAAATTGAAATTACCTCAGCA-TGCCCCGGGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAGACAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCAAAATA
10452545 TGAGTTGATT
66 TGAGTTGATT
*
10452555 TTTAAAAA
1 TTTGAAAA
10452563 ATATAGATTA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
73 44 0.61
75 24 0.33
76 4 0.06
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (75 bp):
TTTGAAAAGACAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCAAAATA
TGAGTTGATT
Found at i:10452664 original size:14 final size:14
Alignment explanation
Indices: 10452645--10452679 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10452635 GAGTTGATTT
* *
10452645 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
10452659 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
10452673 TTGAAAA
1 TTGAAAA
10452680 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:10452704 original size:176 final size:176
Alignment explanation
Indices: 10452483--10453352 Score: 745
Period size: 176 Copynumber: 4.9 Consensus size: 176
10452473 GAGTTGATTT
* * * *
10452483 TTGAAAAGCAGAAATTGAAATTACCTCAGCATGCCCCGGGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
10452548 GTTGATTTTTAAAAAATATAGATTAGAGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGG
66 GTTGATTTTTAAAAAATATAGATTAGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGG
10452613 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA
131 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA
* *
10452659 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
10452724 GTTGATTTTT-GAAAACAT-GAATTA-AAAAAACAGAAATTGAAGATACCTCAGCATGTGAGCC-
66 GTTGATTTTTAAAAAATATAG-ATTAGAAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCT
* * *
10452785 GAGGCTCAACTCACTTTTCACAATATGAGTTGA----T------T-T---
127 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * *
10452821 TTGAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
10452886 GTTGATTTTTTTGAAAAATATAAATTGAAAGAAAAAAACAGAAATTGAAAACT-CCTCAGCATGT
66 GTTGA--TTTTTAAAAAATATAGATT---AG-AAAAAACAGAAATTGAAAA-TACCTCAGC--GT
* ** * *
10452950 GAGCC-GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGGAAAAGTAGAAATTAAAAACA
122 G-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---A--A-AAA-T--ATA-A
10453014 GGA
176 --A
* * * * * *
10453017 TTTGAACAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACTTCTCGTAATA
1 -TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATA
* * * *
10453082 TGAGTTGAAAATTTTTTTGACAAACA-ATA-ATT-G-AAAAGCATAAATTGAAAATACCTCAGCA
63 TGAGTTG---A--TTTTT-A-AAAAATATAGATTAGAAAAAACAGAAATTGAAAATACCTCAGCG
10453143 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAA
121 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAA
* *
10453201 CT----AAC----------AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGC--CCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
10453252 GAGTTGATTTTTGAAAAATATAGATTGGAAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGA
64 GAGTTGATTTTTAAAAAATATAGATTAGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA
*
10453317 GGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
129 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
10453353 TTGAAAACAG
Statistics
Matches: 577, Mismatches: 59, Indels: 128
0.76 0.08 0.17
Matches are distributed among these distances:
162 70 0.12
163 3 0.01
164 18 0.03
165 11 0.02
166 64 0.11
167 2 0.00
168 1 0.00
169 43 0.07
170 64 0.11
171 1 0.00
172 1 0.00
174 27 0.05
175 10 0.02
176 102 0.18
177 2 0.00
179 3 0.01
183 1 0.00
184 1 0.00
186 1 0.00
187 3 0.01
189 1 0.00
190 3 0.01
191 1 0.00
193 3 0.01
194 33 0.06
195 1 0.00
196 28 0.05
197 26 0.05
198 1 0.00
199 34 0.06
202 11 0.02
203 3 0.01
204 4 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (176 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTAAAAAATATAGATTAGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAA
Found at i:10452710 original size:87 final size:87
Alignment explanation
Indices: 10452483--10452841 Score: 479
Period size: 89 Copynumber: 4.1 Consensus size: 87
10452473 GAGTTGATTT
* * * * *
10452483 TTGAAAAGCAGAAATTGAAATTACCTCAGCATGCCCCGGGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
10452548 GTTGATTTTTAAAAAATATAGA
66 GTTGATTTTTGAAAAACATAAA
*
10452570 TTAGAGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TT-GA-AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
*
10452635 GAGTTGATTTTTGAAAAATATAAA
64 GAGTTGATTTTTGAAAAACATAAA
*
10452659 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
10452724 GTTGATTTTTG-AAAACATGAA
66 GTTGATTTTTGAAAAACATAAA
* * * * * *
10452745 TTAAAAAAACAGAAATTGAAGATACCTCAGCATGTGAGCC-GAGGCTCAACTCACTTTTCACAAT
1 TT-GAAAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAAT
*
10452809 ATGAGTTGATTTTTGAAAAACAGAAA
62 ATGAGTTGATTTTTGAAAAACATAAA
10452835 TTGAAAA
1 TTGAAAA
10452842 TACCTCAGTG
Statistics
Matches: 243, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
86 10 0.04
87 98 0.40
88 4 0.02
89 119 0.49
90 12 0.05
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACATAAA
Found at i:10452846 original size:162 final size:162
Alignment explanation
Indices: 10452415--10453011 Score: 664
Period size: 176 Copynumber: 3.5 Consensus size: 162
10452405 AGTTTGAAAG
* * * *
10452415 ACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGA
1 ACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * * * *
10452480 TTTTTGAAAAGCAGAAATTGAAATTACCTCAGCATGCCCCGGGGCTCAACTCACCTCTCGCAATA
66 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
*
10452545 TGAGTTGATTTTT-AAAAAATATAGATTAGAGAAA
131 TGAGTTGATTTTTGAAAAAATA-A-ATTA-AAAAA
* *
10452579 ACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 ACAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCACAATATGAGTTG
*
10452641 ATTTTTGAAAAATATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAT
65 A----T------T-T---TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
* *
10452706 TCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAAAA
116 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATAAATTAAAAAA
* * *
10452753 ACAGAAATTGAAGATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTTTCACAATATGAGTTGA
1 ACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
* * *
10452818 TTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATA
66 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
10452883 TGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAAAAAA
131 TGAGTTGA--TTTTTGAAAAA-ATAAATT-----AAAAAA
** *
10452923 ACAGAAATTGAAAACT-CCTCAGCATGTGAGCCGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 ACAGAAATTGAAAA-TACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTG
* ** *
10452987 ATTTTGGAAAAGTAGAAATTAAAAA
65 ATTTTTGAAAAACAGAAATTGAAAA
10453012 CAGGATTTGA
Statistics
Matches: 372, Mismatches: 33, Indels: 50
0.82 0.07 0.11
Matches are distributed among these distances:
161 2 0.01
162 100 0.27
164 31 0.08
165 7 0.02
166 2 0.01
170 85 0.23
171 1 0.00
172 2 0.01
173 1 0.00
174 26 0.07
175 4 0.01
176 103 0.28
177 8 0.02
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (162 bp):
ACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA
TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAAATAAATTAAAAAA
Found at i:10452888 original size:338 final size:348
Alignment explanation
Indices: 10452260--10453352 Score: 1127
Period size: 338 Copynumber: 3.1 Consensus size: 348
10452250 AGAAATTAAA
* *
10452260 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA-A-ACA-T------GAATT--AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGAAATTAAAACAGATTTGAAAAA
* * *
10452314 CAGAAATTGGAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG-A
66 CAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * *
10452378 -TTTTTGA-AAAGTAAAAATTAAAAACAGAGTTTGAAAGACAGAATTTGAAAATACCTCGGCATG
130 TTTTTTGACAAA-CAATAATT------A-A-----AAA-ACAGAAATTGAAAATACCTCAGCATG
* * *
10452441 TGACCCGAGGCTCAACTCACCTCTCAAAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAATTA
181 TGA-CCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATA
** * * *
10452506 CCTCAGCATGCCCCGGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAATATAGAT
245 CCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAGAT
*
10452571 TAGAGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
310 TAGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
*
10452610 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A-A-AAA-T-ATA-A-A-TTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGAAATTAAAACAGATTTGAAAAA
*
10452667 CAGAAATTGAAAATACCTCAGC-GTG-CCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTG-A
66 CAGAAATTGAAAATACCTCAGCAGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
10452729 -TTTTTGA-AAAC-ATGAATTAAAAAAACAGAAATTGAAGATACCTCAGCATGTGAGCCGAGGCT
130 TTTTTTGACAAACAAT-AATT-AAAAAACAGAAATTGAAAATACCTCAGCATGTGA-CCGAGGCT
* * *
10452791 CAACTCACTTTTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGTC
192 CAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGAC
* * *
10452856 CTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGAAAA
257 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAGATT---AG-AAA
*
10452921 AAACAGAAATTGAAAACT-CCTCAGCATGTGAGCC-G
316 AAACAGAAATTGAAAA-TACCTCAGC--GTG-TCCTG
** *
10452956 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGGAAAAGTAGAAATTAAAAACAGGATTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAG-AGAAATT-AAAACA-GATTTG
* * * * *
10453021 AACAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACTTCTCGTAATATGAG
61 AAAAACAGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
10453086 TTGAAAATTTTTTTGACAAACAATAATTGAAAAGCATAAATTGAAAATACCTCAGCATGT--CCT
125 TTG--AA-TTTTTTGACAAACAATAATTAAAAAACAGAAATTGAAAATACCTCAGCATGTGACC-
* * * *
10453149 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAACT-AACAATACCT
186 GAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAA-AATACCT
*
10453213 CAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAGATT
248 CAG--TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAGATT
* *
10453278 GGAAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
311 AGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
*
10453316 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
10453353 TTGAAAACAG
Statistics
Matches: 635, Mismatches: 59, Indels: 88
0.81 0.08 0.11
Matches are distributed among these distances:
338 123 0.19
339 3 0.00
340 17 0.03
343 2 0.00
344 26 0.04
345 2 0.00
346 39 0.06
347 2 0.00
349 7 0.01
350 44 0.07
351 47 0.07
352 4 0.01
353 26 0.04
355 2 0.00
356 1 0.00
358 1 0.00
359 29 0.05
360 37 0.06
361 33 0.05
362 28 0.04
363 3 0.00
364 31 0.05
365 2 0.00
366 79 0.12
367 8 0.01
368 39 0.06
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (348 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGAAATTAAAACAGATTTGAAAAA
CAGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
TTTTTGACAAACAATAATTAAAAAACAGAAATTGAAAATACCTCAGCATGTGACCGAGGCTCAAC
TCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGTGTGACCCGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAGATTAGAAAAAACAGAAAT
TGAAAATACCTCAGCGTGTCCTG
Found at i:10452889 original size:73 final size:75
Alignment explanation
Indices: 10452749--10452915 Score: 214
Period size: 75 Copynumber: 2.2 Consensus size: 75
10452739 CATGAATTAA
* * *
10452749 AAAAACAGAAATTGAAGATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTTTCACAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG-ATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAG
10452814 TTGA-TTTTTG
65 TTGATTTTTTG
* * *
10452824 AAAAACAGAAATTGAAAATACCTCAG-TGTG-TCCTGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGATGTGAGCC-GAGGCTCAACTCACCTCTCACAATATGAG
10452887 TTGATTTTTTTG
65 TTGA-TTTTTTG
* *
10452899 AAAAATATAAATTGAAA
1 AAAAACAGAAATTGAAA
10452916 GAAAAAAACA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
72 2 0.02
73 33 0.41
75 46 0.57
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCAGATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGT
TGATTTTTTG
Found at i:10453006 original size:95 final size:97
Alignment explanation
Indices: 10452823--10453196 Score: 312
Period size: 102 Copynumber: 3.9 Consensus size: 97
10452813 GTTGATTTTT
* * * *
10452823 GAAAAACAGAAATTGAAAATACCTCAG--TGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGA
1 GAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACTTCTCGCAATATGA
* * *
10452886 GTTGATTTTTTTGAAAAATATAAATTGAAAGA-A
66 GTTGA-TTTTTGGAAAAATAGAAATT-AAAAACA
* *
10452919 -AAAAACAGAAATTGAAAACT-CCTCAGCATGTGAGCCGAGGCTCAACTCATTTCTCGCAATATG
1 GAAAAACAGAAATTGAAAA-TACCTCAGCATGTGACCCGAGGCTCAACTCACTTCTCGCAATATG
*
10452982 AGTTGA-TTTTGGAAAAGTAGAAATTAAAAACA
65 AGTTGATTTTTGGAAAAATAGAAATTAAAAACA
* * *
10453014 GGATTTGAACAACAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACTTCTCGTA
1 -GA----AA-AACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACTTCTCGCA
* * *
10453079 ATATGAGTTGAAAATTTTTTTGACAAACA-ATAATT-------
60 ATATGAGTTG---A-TTTTTGGAAAAATAGA-AATTAAAAACA
* * * *
10453114 GAAAAGCATAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 GAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACTTCTCGCAATATGA
*
10453177 GTTGATTTTTTTGAAAAATA
66 GTTGA-TTTTTGGAAAAATA
10453197 TAAACTAACA
Statistics
Matches: 232, Mismatches: 28, Indels: 43
0.77 0.09 0.14
Matches are distributed among these distances:
89 14 0.06
92 32 0.14
94 28 0.12
95 43 0.19
96 1 0.00
97 36 0.16
99 2 0.01
101 3 0.01
102 58 0.25
105 1 0.00
106 1 0.00
107 13 0.06
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (97 bp):
GAAAAACAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACTTCTCGCAATATGA
GTTGATTTTTGGAAAAATAGAAATTAAAAACA
Found at i:10453006 original size:170 final size:162
Alignment explanation
Indices: 10452661--10453011 Score: 490
Period size: 170 Copynumber: 2.1 Consensus size: 162
10452651 AATATAAATT
*
10452661 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAATTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
10452726 TGATTTTTGAAAACATGAATTAAAAAAACAGAAATTGAAGATACCTCAGCATGTGAGCCGAGGCT
66 TGATTTTTGAAAACATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCT
*
10452791 CAACTCACTTTTCACAATATGAGTTGATTTTT
131 CAACTCACTTTTCACAATATGAGTTGATTTTG
* * *
10452823 GAAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
10452888 TGATTTTTTTGAAAAATATAAATTGAAAGAAAAAAACAGAAATTGAAAACT-CCTCAGCATGTGA
66 TGA--TTTTTG-AAAACATAAATT-----AAAAAAACAGAAATTGAAAA-TACCTCAGCATGTGA
*
10452952 GCCGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGATTTTG
122 GCCGAGGCTCAACTCACTTT-TCACAATATGAGTTGATTTTG
** *
10452993 GAAAAGTAGAAATTAAAAA
1 GAAAAACAGAAATTGAAAA
10453012 CAGGATTTGA
Statistics
Matches: 167, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
162 64 0.38
164 6 0.04
165 10 0.06
169 3 0.02
170 83 0.50
171 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (162 bp):
GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAACATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCT
CAACTCACTTTTCACAATATGAGTTGATTTTG
Found at i:10453263 original size:75 final size:74
Alignment explanation
Indices: 10453131--10453273 Score: 234
Period size: 77 Copynumber: 1.9 Consensus size: 74
10453121 ATAAATTGAA
* *
10453131 AATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAT
1 AATACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAT
10453196 ATAAACTAAC
65 ATAAACTAAC
10453206 AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA
1 AATACCTCAGCAT--GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
10453270 TATA
64 TATA
10453274 GATTGGAAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
75 28 0.44
77 36 0.56
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (74 bp):
AATACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA
TAAACTAAC
Found at i:10453328 original size:166 final size:166
Alignment explanation
Indices: 10453037--10453359 Score: 476
Period size: 166 Copynumber: 1.9 Consensus size: 166
10453027 AGAATTTGAA
* * * *
10453037 AATACCTCGGCATGTGACCCGAGGCTCAACTCACTTCTCGTAATATGAGTTGAAAATTTTTTTGA
1 AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG--AA-TTTTTTGA
*
10453102 CAAACAATAATTGAAAAGCATAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
63 CAAACAATAATTGAAAAGAATAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
10453167 CGCAATATGAGTTGATTTTTTTGAAAAATATAAACTAAC
128 CGCAATATGAGTTGATTTTTTTGAAAAATATAAACTAAC
10453206 AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTGA-AA
1 AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGACAA
*
10453268 A-ATATAGATTGGAAAA-AATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 ACA-ATA-ATT-GAAAAGAAT--AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCT
*
10453331 CTCGCAATATGAGTTGGTTTTTTTGAAAA
126 CTCGCAATATGAGTTGATTTTTTTGAAAA
10453360 CAGAAATAAA
Statistics
Matches: 142, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
162 1 0.01
163 6 0.04
164 12 0.08
165 5 0.04
166 70 0.49
169 48 0.34
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (166 bp):
AATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGACAA
ACAATAATTGAAAAGAATAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAAATATAAACTAAC
Found at i:10465252 original size:14 final size:15
Alignment explanation
Indices: 10465227--10465256 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10465217 TAAGAGTATG
10465227 TACATAATATATATT
1 TACATAATATATATT
10465242 TACATATATATATAT
1 TACATA-ATATATAT
10465257 ATAATTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TACATAATATATATT
Found at i:10465475 original size:2 final size:2
Alignment explanation
Indices: 10465433--10465464 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10465423 TAGGTACCTA
10465433 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10465465 GCATAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10465988 original size:21 final size:20
Alignment explanation
Indices: 10465962--10466009 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
10465952 TTGAAAATAT
*
10465962 ATATACATAATATATATAAAC
1 ATATACAT-ATATACATAAAC
*
10465983 ATATACGATATATACATATAC
1 ATATAC-ATATATACATAAAC
10466004 AT-TACA
1 ATATACA
10466010 AATGATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.04
20 3 0.12
21 18 0.75
22 2 0.08
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATACATATATACATAAAC
Found at i:10466001 original size:15 final size:15
Alignment explanation
Indices: 10465960--10466003 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
10465950 TATTGAAAAT
*
10465960 ATATATACATAATA-T
1 ATATATACAT-ATACG
*
10465975 ATATAAACATATACG
1 ATATATACATATACG
10465990 ATATATACATATAC
1 ATATATACATATAC
10466004 ATTACAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 3 0.12
15 22 0.88
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (15 bp):
ATATATACATATACG
Found at i:10466371 original size:17 final size:17
Alignment explanation
Indices: 10466338--10466371 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10466328 TAATGTTTCA
*
10466338 TAAATATATAAATATAT
1 TAAATATATAAACATAT
*
10466355 TAAATATATACACATAT
1 TAAATATATAAACATAT
10466372 ATGTACATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAATATATAAACATAT
Found at i:10466944 original size:19 final size:19
Alignment explanation
Indices: 10466916--10466958 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
10466906 ATTTGGTGAG
10466916 GAGA-AAAGAAAAAAAAAA
1 GAGAGAAAGAAAAAAAAAA
* *
10466934 GAGAGAAAGAAGAAAGAAA
1 GAGAGAAAGAAAAAAAAAA
*
10466953 GGGAGA
1 GAGAGA
10466959 GAGAGGGAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAGAGAAAGAAAAAAAAAA
Found at i:10467613 original size:144 final size:145
Alignment explanation
Indices: 10467350--10467733 Score: 630
Period size: 144 Copynumber: 2.6 Consensus size: 145
10467340 TCAAAGATTA
*
10467350 CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTTAGGT
1 CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAG--TTATCTTCCTGAGGT
* *
10467415 AGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGCAAATCTTATCTCCATGTATC-AGCAA
64 AGCAAGGAAGCAGACTGAAGATTGAAGATTGGAACAAGCAAATCTTATCTCCATGTATCGA-CAA
10467479 TGGAGCAGATTTAAGCCC
128 TGGAGCAGATTTAAGCCC
*
10467497 CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAG-TGTCTTCCTGAGGTAG
1 CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTTATCTTCCTGAGGTAG
10467561 CAAGGAAGCAGACTGAAGATTGAAGATTGGAACAAGCAAATCTTATCTCCATGTATCGACAATGG
66 CAAGGAAGCAGACTGAAGATTGAAGATTGGAACAAGCAAATCTTATCTCCATGTATCGACAATGG
10467626 AGCAGATTTAAGCCC
131 AGCAGATTTAAGCCC
* * *
10467641 CAAGCCTTGTCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGT
1 CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAG--TTATCTTCCTGAGGT
*
10467705 AGCAAGGAAACAGACTGAAGATTGAAGAT
64 AGCAAGGAAGCAGACTGAAGATTGAAGAT
10467734 CTTATCTCCC
Statistics
Matches: 224, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
143 2 0.01
144 132 0.59
145 1 0.00
146 41 0.18
147 48 0.21
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (145 bp):
CAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGTTATCTTCCTGAGGTAG
CAAGGAAGCAGACTGAAGATTGAAGATTGGAACAAGCAAATCTTATCTCCATGTATCGACAATGG
AGCAGATTTAAGCCC
Found at i:10467943 original size:177 final size:175
Alignment explanation
Indices: 10467599--10468014 Score: 532
Period size: 177 Copynumber: 2.4 Consensus size: 175
10467589 GGAACAAGCA
* * *
10467599 AATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCCCAAGCCTTGTCTCTCTGAGGTAA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG-CCCAAGCCTTATCTCTCTGAAGTAA
* *
10467664 CAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAGATTG
65 CAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTAAAGATTG
* *
10467729 AAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAGAA-TGGTG
130 AAGATCTTATCTCCCTAAGCAGAAGCGGAGCAGATCGA-AAGAGGTG
* * *
10467775 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAG-CTATTGACCTTATCTCTCTGAAGTA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCA-AG-CCTTATCTCTCTGAAGTA
** ** * *
10467839 GTAAGAGAGCAAGTTGGTGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGAT
64 ACAAGAGAGCAAGTTGAAGAATG-AGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTAAAGAT
* *
10467904 TGAAGATCTTATTTCCCTGAA-CAGAAGCGGAGTAGATCGAAAGAGGTG
128 TGAAGATCTTATCTCCCT-AAGCAGAAGCGGAGCAGATCGAAAGAGGTG
* * * ** *
10467952 GATCTTATCTCCATGTATCGGCAATGGAACAGGTTTAAGCCCTAAGATTTATTTCTCTGAAGT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCC-AAGCCTTATCTCTCTGAAGT
10468015 TGCAGCAGAG
Statistics
Matches: 206, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
174 2 0.01
175 1 0.00
176 72 0.35
177 126 0.61
178 4 0.02
179 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (175 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCAAGCCTTATCTCTCTGAAGTAAC
AAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTAAAGATTGA
AGATCTTATCTCCCTAAGCAGAAGCGGAGCAGATCGAAAGAGGTG
Found at i:10468273 original size:176 final size:176
Alignment explanation
Indices: 10468022--10468602 Score: 744
Period size: 176 Copynumber: 3.3 Consensus size: 176
10468012 AGTTGCAGCA
* * * *
10468022 GAGCAGATTGAAGATGGTGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAA
1 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCA-CTA
* * *
10468086 GCCTTATCTCTCTAACGTAGCAAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGCA
65 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCA
* * * *
10468151 TGGAAGTAGATTGAAAATTAAAGATCTTATCTCCTTAAGCAGTAGCG
130 AGGAAGCAGACTGAAAATTGAAGATCTTATCTCCTTAAGCAGTAGCG
* * * * * *
10468198 GAGCATATTGAAAATGGCGAATCTTCTCTCCATGTA-CAGGCAATGGAGCAGATTTTAGCTACTG
1 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTTTAGCCACTA
* * *
10468262 GCCTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCA
65 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCA
* *
10468327 AGAAAGCAGACTGAAGATTGAAGATCTTATCT-CTCTAAGCAGTAGCG
130 AGGAAGCAGACTGAAAATTGAAGATCTTATCTCCT-TAAGCAGTAGCG
* ** * *
10468374 GAGCAGATCGAAGATGGCGAGTCTTATCTCTGTCTATCGGTAATGGAGCAGATTTTAGCCACTAG
1 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAG
** *
10468439 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGCCGATTGTAGTCTTATCTTCCTGAGGTAACA
66 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCA
* * * *
10468504 AGGAAGCAGACT-AAAGATTGAAGATC-TATTTCCCTAAGCAGTTGTG
130 AGGAAGCAGACTGAAA-ATTGAAGATCTTATCTCCTTAAGCAGTAGCG
* *
10468550 GAGC--ATCGAGGACGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
1 GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
10468603 AAGTCACCAG
Statistics
Matches: 348, Mismatches: 50, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
174 42 0.12
175 3 0.01
176 257 0.74
177 46 0.13
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (176 bp):
GAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAG
CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAA
GGAAGCAGACTGAAAATTGAAGATCTTATCTCCTTAAGCAGTAGCG
Found at i:10468300 original size:265 final size:266
Alignment explanation
Indices: 10467729--10468313 Score: 611
Period size: 265 Copynumber: 2.2 Consensus size: 266
10467719 CTGAAGATTG
* * * * *
10467729 AAGATCTTATCTCCCT-AAGCAGTAGCGGAGCAGATCG-AGAATGGTGAATCTTATCTCCATGTA
1 AAGA-CTTATCTCTCTGAAGTAGCAGCAGAGCAGATTGAAG-ATGGTGAATCTTATCTCCATGTA
* *** * ***
10467792 TCGGCAATGGAGCAGATTTTAGCTATTGACCTTATCTCTCTGAAGTAGTAAGAGAGCAAGTTGGT
64 TCGGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAAGTAGCAAGAGAGCAAGTTAAA
* * *
10467857 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATTTCCCT
129 GAATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCTCCCT
* * * *
10467922 GAACAGAAGCGGAGTAGATCGAAAGAGGTGGATCTTATCTCCATGTATCGGCAATGGAACAGGTT
194 GAACAGAAGCGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAACAGATT
*
10467987 TAAGCCCT
259 TAAGCACT
* * * *
10467995 AAGATTTATTTCTCTGAAGTTGCAGCAGAGCAGATTGAAGATGGTGAATTTTATCTCCATGTATC
1 AAGACTTATCTCTCTGAAGTAGCAGCAGAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATC
*
10468060 GGCAATGGAGCAGATTTTA-CCACCAAGCCTTATCTCTCT-AACGTAGCAAGAGAGCAGGTTAAA
66 GGCAATGGAGCAGATTTTAGCCACCAA-CCTTATCTCTCTGAA-GTAGCAAGAGAGCAAGTTAAA
* * *
10468123 GAATG-AGTCTTATCTTCCTGAGGTAGCATGGAAGTAGATTGAAA-ATTAAAGATCTTATCT-CC
129 GAATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTAAAGATCTTATCTCCC
* * * * * *
10468185 TTAAGCAGTAGCGGAGCATATTGAAA-ATGGCGAATCTTCTCTCCATGTA-CAGGCAATGGAGCA
193 TGAA-CAGAAGCGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATGTATC-GGCAATGGAACA
*
10468248 GATTTTAGCTACT
255 GATTTAAGC-ACT
* * * * * *
10468261 -GGCCTTATCTCTCTGAGGTAGCAAG-AGAGTAGGTTGAAGAT--TGAGTCTTATCT
1 AAGACTTATCTCTCTGAAGTAGC-AGCAGAGCAGATTGAAGATGGTGAATCTTATCT
10468314 TTCTGAGGTA
Statistics
Matches: 263, Mismatches: 46, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
263 10 0.04
264 7 0.03
265 142 0.54
266 102 0.39
267 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (266 bp):
AAGACTTATCTCTCTGAAGTAGCAGCAGAGCAGATTGAAGATGGTGAATCTTATCTCCATGTATC
GGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAAGTAGCAAGAGAGCAAGTTAAAGA
ATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCTCCCTGA
ACAGAAGCGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAACAGATTTA
AGCACT
Found at i:10468312 original size:43 final size:45
Alignment explanation
Indices: 10468264--10468362 Score: 139
Period size: 43 Copynumber: 2.2 Consensus size: 45
10468254 AGCTACTGGC
* * **
10468264 CTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTG-AG-T
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
*
10468307 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
10468352 CTTATCTCTCT
1 CTTATCTCTCT
10468363 AAGCAGTAGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 35 0.73
44 2 0.04
45 11 0.23
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (45 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
Found at i:10470260 original size:30 final size:31
Alignment explanation
Indices: 10470198--10470260 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
10470188 CATATAATTT
* * * *
10470198 TTATTTTTTTTAAATCTACTTGTATACGTAA
1 TTATTTTTTTAAAATCTACTTGCAAACATAA
*
10470229 TTATTTTTTTAAAATCTA-TTGCAAATATAA
1 TTATTTTTTTAAAATCTACTTGCAAACATAA
10470259 TT
1 TT
10470261 TATGATAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (31 bp):
TTATTTTTTTAAAATCTACTTGCAAACATAA
Found at i:10486190 original size:21 final size:21
Alignment explanation
Indices: 10486164--10486216 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
10486154 AGAAACAAGA
10486164 AAGTATAGATACCTTTAAGGC
1 AAGTATAGATACCTTTAAGGC
* * * *
10486185 AAGTATAAATACTTTTAGGGT
1 AAGTATAGATACCTTTAAGGC
*
10486206 AAGTATGGATA
1 AAGTATAGATA
10486217 TTTCAAGATC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (21 bp):
AAGTATAGATACCTTTAAGGC
Found at i:10488179 original size:20 final size:21
Alignment explanation
Indices: 10488139--10488186 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
10488129 AACTCTTTAT
10488139 AATA-ATTTGGAATAAACTCA
1 AATACATTTGGAATAAACTCA
*
10488159 AATACATTTGGTATAAA-TCA
1 AATACATTTGGAATAAACTCA
10488179 AAT-CATTT
1 AATACATTT
10488187 TAAAAACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 10 0.38
21 11 0.42
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.35
Consensus pattern (21 bp):
AATACATTTGGAATAAACTCA
Found at i:10488979 original size:13 final size:13
Alignment explanation
Indices: 10488961--10488990 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10488951 GTCTATAATT
10488961 AATTCTTTTAACA
1 AATTCTTTTAACA
*
10488974 AATTCTTTTATCA
1 AATTCTTTTAACA
10488987 AATT
1 AATT
10488991 TGCATACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTCTTTTAACA
Found at i:10494498 original size:16 final size:16
Alignment explanation
Indices: 10494475--10494513 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
10494465 ACACATGGAT
10494475 ATGAAAAG-TATTAAA
1 ATGAAAAGATATTAAA
10494490 ATAGAAAAGATATTAAA
1 AT-GAAAAGATATTAAA
10494507 ATGAAAA
1 ATGAAAA
10494514 AGAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (16 bp):
ATGAAAAGATATTAAA
Found at i:10496405 original size:23 final size:22
Alignment explanation
Indices: 10496377--10496426 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
10496367 AAGGAAATTA
10496377 AAAAAATAAAAAGGTTTTTCTAT
1 AAAAAATAAAAA-GTTTTTCTAT
** *
10496400 AAAAAATTTAAATTTTTTCTAT
1 AAAAAATAAAAAGTTTTTCTAT
10496422 AAAAA
1 AAAAA
10496427 CCTAAGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAAAATAAAAAGTTTTTCTAT
Found at i:10496594 original size:24 final size:24
Alignment explanation
Indices: 10496567--10496619 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
10496557 ATAAAATAAA
* *
10496567 AAAATTAAATTAATTTAAAAA-AT
1 AAAATTAAATAAAATTAAAAAGAT
10496590 GAAAATTAAATAAAATTAAAAAGAT
1 -AAAATTAAATAAAATTAAAAAGAT
10496615 AAAAT
1 AAAAT
10496620 GAGACCCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (24 bp):
AAAATTAAATAAAATTAAAAAGAT
Found at i:10509149 original size:20 final size:19
Alignment explanation
Indices: 10509108--10509149 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10509098 TTATGCTTTC
*
10509108 AAAAATAATTTTGGAATGA
1 AAAAATAATTTTGAAATGA
*
10509127 AAAAATAATTTTAGAAATTA
1 AAAAATAATTTT-GAAATGA
10509147 AAA
1 AAA
10509150 TTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (19 bp):
AAAAATAATTTTGAAATGA
Found at i:10516841 original size:25 final size:26
Alignment explanation
Indices: 10516804--10516856 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
10516794 ATTATTAATT
* *
10516804 AAATTAATATTATTTTTTATTTTAAAA
1 AAATTAATATTATTATTTA-CTTAAAA
10516831 AAATT-AT-TTATTATTTACTTAAAA
1 AAATTAATATTATTATTTACTTAAAA
10516855 AA
1 AA
10516857 GTAAAAAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 9 0.38
26 2 0.08
27 5 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
AAATTAATATTATTATTTACTTAAAA
Found at i:10517175 original size:28 final size:29
Alignment explanation
Indices: 10517144--10517205 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
10517134 AACTTCAAAG
* *
10517144 TTAAATTTTA-ATTAAATATTAATTATTA
1 TTAAATTCTATATAAAATATTAATTATTA
*
10517172 TTAAA-TCTATATAAAATATTATTTATTA
1 TTAAATTCTATATAAAATATTAATTATTA
*
10517200 TAAAAT
1 TTAAAT
10517206 AATTTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (29 bp):
TTAAATTCTATATAAAATATTAATTATTA
Found at i:10517262 original size:14 final size:14
Alignment explanation
Indices: 10517245--10517280 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
10517235 TAAATTTCAA
*
10517245 AAAAATTATCATAC
1 AAAAATTATAATAC
10517259 AAAAATATATAATAC
1 AAAAAT-TATAATAC
10517274 AAAAATT
1 AAAAATT
10517281 TATTCAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAAATTATAATAC
Found at i:10521525 original size:67 final size:69
Alignment explanation
Indices: 10521412--10521542 Score: 185
Period size: 67 Copynumber: 1.9 Consensus size: 69
10521402 GTATGTAGGC
*
10521412 TACGATAGAATGTAGAAGAGGATACTAACAAGTTTGGTTGTCTATTTATAGGCTTTAAAATTAGA
1 TACGATAGAATGTAGAAGAGGA-ACT-A-AAGTTTGGTTGTCTATTTATAAGCTTTAAAATTAGA
10521477 GTTCTTA
63 GTTCTTA
* * *
10521484 TACGATAGAATGTAGAATAGG-ACT-AAGTTTGGTTGTGTATTTATAAGTTTTAAAATTAG
1 TACGATAGAATGTAGAAGAGGAACTAAAGTTTGGTTGTCTATTTATAAGCTTTAAAATTAG
10521543 GATTCTGCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
67 32 0.58
70 3 0.05
72 20 0.36
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.37
Consensus pattern (69 bp):
TACGATAGAATGTAGAAGAGGAACTAAAGTTTGGTTGTCTATTTATAAGCTTTAAAATTAGAGTT
CTTA
Found at i:10522391 original size:12 final size:12
Alignment explanation
Indices: 10522353--10522391 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10522343 TCTCTCTCAC
*
10522353 CTTCTTCTTCTT
1 CTTCCTCTTCTT
* *
10522365 CTTCCTATTCCT
1 CTTCCTCTTCTT
10522377 CTTCCTCTTCTT
1 CTTCCTCTTCTT
10522389 CTT
1 CTT
10522392 GTAGTGCTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.03, C:0.38, G:0.00, T:0.59
Consensus pattern (12 bp):
CTTCCTCTTCTT
Found at i:10540905 original size:18 final size:17
Alignment explanation
Indices: 10540877--10540918 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
10540867 ATATATAATT
10540877 ATATT-TTAAAAATAAA
1 ATATTATTAAAAATAAA
*
10540893 ATATGTATTAAAATTAAA
1 ATAT-TATTAAAAATAAA
10540911 ATATTATT
1 ATATTATT
10540919 TTACTTTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 14 0.61
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATATTATTAAAAATAAA
Found at i:10541662 original size:13 final size:13
Alignment explanation
Indices: 10541637--10541686 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
10541627 TAATCTTAAA
*
10541637 ATTTTTGAAATAT
1 ATTTTTAAAATAT
*
10541650 ATATTTAAAATAT
1 ATTTTTAAAATAT
*
10541663 -TTTATTAATATAT
1 ATTT-TTAAAATAT
10541676 ATTTTTAAAAT
1 ATTTTTAAAAT
10541687 TTTAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 2 0.07
13 25 0.83
14 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (13 bp):
ATTTTTAAAATAT
Found at i:10541672 original size:24 final size:22
Alignment explanation
Indices: 10541632--10541702 Score: 79
Period size: 24 Copynumber: 3.1 Consensus size: 22
10541622 TTTATTAATC
* *
10541632 TTAAAATTTTTGAAATATATAT
1 TTAAAAATTTTAAAATATATAT
*
10541654 TTAAAATATTTTATTAATATATATT
1 TTAAAA-ATTTTA-AAATATATA-T
*
10541679 TTTAAAATTTTAAAATATATAT
1 TTAAAAATTTTAAAATATATAT
10541701 TT
1 TT
10541703 TGAAATTACT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
22 9 0.22
23 12 0.29
24 14 0.34
25 6 0.15
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
TTAAAAATTTTAAAATATATAT
Found at i:10541724 original size:22 final size:23
Alignment explanation
Indices: 10541697--10541754 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
10541687 TTTAAAATAT
*
10541697 ATATTTTGAA-ATTACTTTTTTTA
1 ATATTTTAAATATTA-TTTTTTTA
10541720 A-ATTTTAAATATTATTTTTTTA
1 ATATTTTAAATATTATTTTTTTA
10541742 ATA-TTTAAATATT
1 ATATTTTAAATATT
10541755 TTAAACTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
22 26 0.81
23 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
ATATTTTAAATATTATTTTTTTA
Found at i:10541815 original size:31 final size:28
Alignment explanation
Indices: 10541762--10541828 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 28
10541752 ATTTTAAACT
10541762 TTTAAATTTGTTATTAGTTTTATAATAA
1 TTTAAATTTGTTATTAGTTTTATAATAA
* *
10541790 TTTAAATATTGTTTAATTTGTTTTATAATAT
1 TTTAAAT-TTG-TT-ATTAGTTTTATAATAA
10541821 TTTAAATT
1 TTTAAATT
10541829 ATGATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 7 0.21
29 3 0.09
30 3 0.09
31 21 0.62
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (28 bp):
TTTAAATTTGTTATTAGTTTTATAATAA
Found at i:10542421 original size:2 final size:2
Alignment explanation
Indices: 10542414--10542442 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10542404 GTAACATGAT
10542414 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10542443 TTACGCATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10542745 original size:218 final size:223
Alignment explanation
Indices: 10542340--10542838 Score: 882
Period size: 218 Copynumber: 2.2 Consensus size: 223
10542330 AGTTTTTAAA
10542340 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
*
10542405 TAACATGATTATATATATATATATATATATATATATATTTACGCATGTATCACATTACAAAAATA
66 T-A-A-GATTATAGATATATATATATATATATATATATTTACGCATGTATCACATTACAAAAATA
* **
10542470 AAATTTTAAATACTTATACCTAATAAAACATGTATCTCATTATAATAATTGTTATTTTCCAAATA
128 AAATTTTAAATACTTATACCTAATAAAACATGTATCTCATTACAATAATAATTATTTTCCAAATA
10542535 ACATATTATTTTATAATTTTATTTCTTATTT
193 ACATATTATTTTATAATTTTATTTCTTATTT
10542566 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
10542631 T-A-A-TAT-GAT-TATATATATATATATATATATTTACGCATGTATCACATTACAAAAATAAAA
66 TAAGATTATAGATATATATATATATATATATATATTTACGCATGTATCACATTACAAAAATAAAA
10542691 TTTTAAATACTTATACCTAATAAAACATGTATCTCATTACAATAATAATTATTTTCCAAATAACA
131 TTTTAAATACTTATACCTAATAAAACATGTATCTCATTACAATAATAATTATTTTCCAAATAACA
*
10542756 TATTGTTTTATAATTTTATTTCTTATTT
196 TATTATTTTATAATTTTATTTCTTATTT
*
10542784 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTA
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTA
10542839 TTAAAATTAA
Statistics
Matches: 267, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
218 194 0.73
219 2 0.01
220 3 0.01
221 1 0.00
223 1 0.00
226 66 0.25
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (223 bp):
AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
TAAGATTATAGATATATATATATATATATATATATTTACGCATGTATCACATTACAAAAATAAAA
TTTTAAATACTTATACCTAATAAAACATGTATCTCATTACAATAATAATTATTTTCCAAATAACA
TATTATTTTATAATTTTATTTCTTATTT
Found at i:10543377 original size:14 final size:15
Alignment explanation
Indices: 10543358--10543390 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
10543348 ATCTTTAAAA
10543358 ATAATTTAAAA-ATT
1 ATAATTTAAAATATT
10543372 ATAATTTAAAATATT
1 ATAATTTAAAATATT
10543387 ATAA
1 ATAA
10543391 AACAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:10543478 original size:31 final size:30
Alignment explanation
Indices: 10543365--10543489 Score: 92
Period size: 31 Copynumber: 3.9 Consensus size: 30
10543355 AAAATAATTT
* *
10543365 AAAAATTATAATTTAAAATATTATAAAACAA
1 AAAAATAAT-ATTTAAAATATTATAAAATAA
* *
10543396 ATTAAATAATATTTAAATTATTATAAAACTAA
1 A-AAAATAATATTTAAAATATTATAAAA-TAA
*
10543428 TAACAAATTTAAAAGTTTAAAATATT-TAAATATTAA
1 -AA-AAA--TAATA-TTTAAAATATTATAAA-A-TAA
*
10543464 AAAAATAATATTTAAAAT-TTAAAAAA
1 AAAAATAATATTTAAAATATTATAAAA
10543490 AGTAATTTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
30 3 0.04
31 29 0.39
32 12 0.16
33 4 0.05
34 3 0.04
35 10 0.13
36 14 0.19
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAAATAATATTTAAAATATTATAAAATAA
Found at i:10543488 original size:23 final size:23
Alignment explanation
Indices: 10543448--10543505 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
10543438 AAAAGTTTAA
10543448 AATATTT-AAATATTAAAAAAAT
1 AATATTTAAAATATTAAAAAAAT
10543470 AATATTTAAAAT-TTAAAAAAAGT
1 AATATTTAAAATATTAAAAAAA-T
*
10543493 AAT-TTCAAAATAT
1 AATATTTAAAATAT
10543506 ATATTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
22 23 0.72
23 9 0.28
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AATATTTAAAATATTAAAAAAAT
Found at i:10543549 original size:24 final size:22
Alignment explanation
Indices: 10543493--10543556 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 22
10543483 TAAAAAAAGT
* *
10543493 AATTTCAAAATATATATTTTAA
1 AATTTTAAAATATATATTATAA
10543515 AATTTTAAAATATATATTAATAA
1 AATTTTAAAATATATATT-ATAA
*
10543538 AATATTTTAAATATATATT
1 AAT-TTTAAAATATATATT
10543557 TCAAAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 17 0.46
23 6 0.16
24 14 0.38
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTTTAAAATATATATTATAA
Found at i:10543563 original size:24 final size:23
Alignment explanation
Indices: 10543494--10543572 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 23
10543484 AAAAAAAGTA
*
10543494 ATTTCAAAATATATATTTTAAAAT
1 ATTT-AAAATATATATTTAAAAAT
*
10543518 -TTTAAAATATATATTAATAAAAT
1 ATTTAAAATATATATTTA-AAAAT
*
10543541 ATTTTAAATATATATTTCAAAAAT
1 ATTTAAAATATATATTT-AAAAAT
*
10543565 ATTAAAAA
1 ATTTAAAA
10543573 AAATAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
22 12 0.26
23 8 0.17
24 25 0.54
25 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTAAAATATATATTTAAAAAT
Found at i:10543595 original size:46 final size:46
Alignment explanation
Indices: 10543500--10543596 Score: 106
Period size: 46 Copynumber: 2.1 Consensus size: 46
10543490 AGTAATTTCA
* * * * * ***
10543500 AAATATATATTTTAAAATTTTAAAATATATATTAATAAAATATTTT
1 AAATATATATTTAAAAATATTAAAAAAAATAATAATAAAATAAAAT
10543546 AAATATATATTTCAAAAATATTAAAAAAAATAATAAT-AAATAAAAT
1 AAATATATATTT-AAAAATATTAAAAAAAATAATAATAAAATAAAAT
10543592 AAATA
1 AAATA
10543597 AATGAGACAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
46 23 0.55
47 19 0.45
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (46 bp):
AAATATATATTTAAAAATATTAAAAAAAATAATAATAAAATAAAAT
Found at i:10543621 original size:26 final size:27
Alignment explanation
Indices: 10543582--10543647 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
10543572 AAAATAATAA
10543582 TAAATAAAATAAAT-AAATGAGACAAAAAG
1 TAAA-AAAA-AAATCAAA-GAGACAAAAAG
* **
10543611 -ACAAAAAAAATCAAAGAGTTAAAAAG
1 TAAAAAAAAAATCAAAGAGACAAAAAG
10543637 TAAAAAAAAAA
1 TAAAAAAAAAA
10543648 AGGTACTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 13 0.42
27 16 0.52
28 2 0.06
ACGTcount: A:0.73, C:0.05, G:0.09, T:0.14
Consensus pattern (27 bp):
TAAAAAAAAAATCAAAGAGACAAAAAG
Found at i:10544158 original size:24 final size:22
Alignment explanation
Indices: 10544101--10544159 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
10544091 AAAACTATGT
* *
10544101 AAAATTTTAAAATTTATTTTAA
1 AAAATATTAAAATATATTTTAA
* *
10544123 AAAATCTATAAATATATATTATTTA
1 AAAATAT-TAAA-ATATATT-TTAA
10544148 AAAATATTAAAA
1 AAAATATTAAAA
10544160 AGTTCTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 6 0.20
23 5 0.17
24 10 0.33
25 9 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATTAAAATATATTTTAA
Found at i:10544388 original size:19 final size:20
Alignment explanation
Indices: 10544364--10544406 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
10544354 AAAATTGAAA
10544364 AAAAATATTTTTA-GATTGT
1 AAAAATATTTTTATGATTGT
*
10544383 AAAAATATTTTTATGATTTT
1 AAAAATATTTTTATGATTGT
10544403 AAAA
1 AAAA
10544407 TTTTTCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (20 bp):
AAAAATATTTTTATGATTGT
Found at i:10544423 original size:17 final size:19
Alignment explanation
Indices: 10544364--10544423 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
10544354 AAAATTGAAA
*
10544364 AAAAATATTTTTA-GATTGT
1 AAAAATATTTTCATGATT-T
*
10544383 AAAAATATTTTTATGATTT
1 AAAAATATTTTCATGATTT
*
10544402 TAAAAT-TTTTCAT-ATTT
1 AAAAATATTTTCATGATTT
10544419 AAAAA
1 AAAAA
10544424 GTTACAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 8 0.22
18 6 0.16
19 19 0.51
20 4 0.11
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (19 bp):
AAAAATATTTTCATGATTT
Found at i:10549901 original size:2 final size:2
Alignment explanation
Indices: 10549894--10549920 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10549884 TCAAAAGTTA
10549894 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10549921 ATTCAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10563079 original size:76 final size:76
Alignment explanation
Indices: 10562987--10563136 Score: 300
Period size: 76 Copynumber: 2.0 Consensus size: 76
10562977 GGTAGCTATT
10562987 TATTGACTTCTTAATCTATTTCTGTTTTGAGAGTACTTCAGAATAATAAATGATTTTATGAGCCG
1 TATTGACTTCTTAATCTATTTCTGTTTTGAGAGTACTTCAGAATAATAAATGATTTTATGAGCCG
10563052 GTTTGTACTTG
66 GTTTGTACTTG
10563063 TATTGACTTCTTAATCTATTTCTGTTTTGAGAGTACTTCAGAATAATAAATGATTTTATGAGCCG
1 TATTGACTTCTTAATCTATTTCTGTTTTGAGAGTACTTCAGAATAATAAATGATTTTATGAGCCG
10563128 GTTTGTACT
66 GTTTGTACT
10563137 CGTGTTATCT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.45
Consensus pattern (76 bp):
TATTGACTTCTTAATCTATTTCTGTTTTGAGAGTACTTCAGAATAATAAATGATTTTATGAGCCG
GTTTGTACTTG
Found at i:10571911 original size:21 final size:20
Alignment explanation
Indices: 10571887--10571928 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
10571877 AGTAGGTAAA
10571887 AAAAAATCTAAAATCATTAAT
1 AAAAAATCTAAAATCA-TAAT
* *
10571908 AAAAAGTTTAAAATCATAAT
1 AAAAAATCTAAAATCATAAT
10571928 A
1 A
10571929 CATAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAAATCTAAAATCATAAT
Found at i:10578907 original size:44 final size:44
Alignment explanation
Indices: 10578857--10578986 Score: 136
Period size: 44 Copynumber: 3.0 Consensus size: 44
10578847 AGGCCTTGGT
* * *
10578857 AATTTCAACCTGCCCCACTACATCTTTAGGGAGATGAGGTTTGC
1 AATTTCAACCTGCTCCACTGCAACTTTAGGGAGATGAGGTTTGC
* * * * **
10578901 AATTTCAATCTGCTTCACTGCAACTTCAGGGAGACGAGACTTGC
1 AATTTCAACCTGCTCCACTGCAACTTTAGGGAGATGAGGTTTGC
* * * *
10578945 GATTTCAACTTGCTCCGCTGCAAC-TTAGGAAGATGAGGTTTG
1 AATTTCAACCTGCTCCACTGCAACTTTAGGGAGATGAGGTTTG
10578987 TTTGGATCTG
Statistics
Matches: 67, Mismatches: 19, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
43 13 0.19
44 54 0.81
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
AATTTCAACCTGCTCCACTGCAACTTTAGGGAGATGAGGTTTGC
Found at i:10579277 original size:57 final size:57
Alignment explanation
Indices: 10579186--10579304 Score: 202
Period size: 57 Copynumber: 2.1 Consensus size: 57
10579176 AGGGGATTAA
* * *
10579186 GATCTGTAAATTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCTTCGTCTTT
1 GATCTATAAATTCAACCTGTTACCCTACTACTTAGGGGGTGAAGGCCCTTCGTCTTC
*
10579243 GATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGGTGAAGGCCCTTCGTCTTC
1 GATCTATAAATTCAACCTGTTACCCTACTACTTAGGGGGTGAAGGCCCTTCGTCTTC
10579300 GATCT
1 GATCT
10579305 GTTTCCCTAC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (57 bp):
GATCTATAAATTCAACCTGTTACCCTACTACTTAGGGGGTGAAGGCCCTTCGTCTTC
Found at i:10579351 original size:44 final size:43
Alignment explanation
Indices: 10579243--10579374 Score: 133
Period size: 44 Copynumber: 3.0 Consensus size: 43
10579233 CTTCGTCTTT
* *
10579243 GATCTATAAATTCAACCTGTTACCCTACTGCTTAGGGGGTGAA
1 GATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGGTTAA
** * * * *
10579286 GGCCCTTCGT--CTTCGATCTGTTTCCCTACTGCTTAGGGGGGTTAA
1 -GATC-T-GTAAATTCAACCTGTTACCCTACTGCTTA-GGGGGTTAA
*
10579331 GATCTGTAAATTCAACCTGTTGCCCTACTGCTTAGGGGGTTAA
1 GATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGGTTAA
10579374 G
1 G
10579375 GCTTGGTGGC
Statistics
Matches: 69, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.03
43 11 0.16
44 46 0.67
45 9 0.13
46 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.33
Consensus pattern (43 bp):
GATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGGTTAA
Found at i:10579376 original size:145 final size:145
Alignment explanation
Indices: 10579113--10579376 Score: 467
Period size: 145 Copynumber: 1.8 Consensus size: 145
10579103 TGATTTCCAG
* *
10579113 CCTGTTACCCTACTGCTTAGGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCTTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGGGTGAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
10579178 GGGATTAAGATCTGTAAATTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCTTCGTCTTT
66 GGGATTAAGATCTGTAAATTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCTTCGTCTTT
10579243 GATCTATAAATTCAA
131 GATCTATAAATTCAA
10579258 CCTGTTACCCTACTGCTTA-GGGGGTGAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGGGTGAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTA-
* * *
10579322 GGGGGTTAAGATCTGTAAATTCAACCTGTTGCCCTACTGCTTAGGGGGTTAAGGC
65 GGGGATTAAGATCTGTAAATTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGC
10579377 TTGGTGGCTT
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
144 42 0.37
145 71 0.63
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (145 bp):
CCTGTTACCCTACTGCTTAGGGGGGTGAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAG
GGGATTAAGATCTGTAAATTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCCCTTCGTCTTT
GATCTATAAATTCAA
Found at i:10579395 original size:44 final size:41
Alignment explanation
Indices: 10579259--10579395 Score: 98
Period size: 44 Copynumber: 3.1 Consensus size: 41
10579249 TAAATTCAAC
*
10579259 CTGTTACCCTACTGCTTAGGGGGTGAAGGCCCTTCGTCTTCG-AT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGG--CTT-GTCTT-GAAT
* * * * *
10579303 CTGTTTCCCTACTGCTTAGGGGGGTTAA-GATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGGTTAAGGCT-TGT--CTTGAAT
*
10579347 CTGTTGCCCTACTGCTTAGGGGGTTAAGGCTTGGTGGCTTGAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTT-GT--CTTGAAT
10579391 CTGTT
1 CTGTT
10579396 TCACTGCGAC
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
42 3 0.04
43 11 0.15
44 51 0.70
45 8 0.11
ACGTcount: A:0.16, C:0.22, G:0.28, T:0.34
Consensus pattern (41 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCTTGAAT
Found at i:10588415 original size:17 final size:19
Alignment explanation
Indices: 10588395--10588432 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10588385 CAAGGGAAGG
10588395 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
10588412 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
10588431 AA
1 AA
10588433 TTAAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:10597067 original size:11 final size:10
Alignment explanation
Indices: 10597033--10597068 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
10597023 AATTTTTTTC
10597033 AAATATTAGA
1 AAATATTAGA
10597043 AAATATTAGA
1 AAATATTAGA
*
10597053 AAATCATTTGA
1 AAAT-ATTAGA
10597064 AAATA
1 AAATA
10597069 ATATATTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (10 bp):
AAATATTAGA
Found at i:10605145 original size:18 final size:18
Alignment explanation
Indices: 10605108--10605158 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
10605098 GACTTTATTT
*
10605108 TAAAAAATAATAAATTAA
1 TAAAAAATAATAAATGAA
10605126 TAAAAAATAAGT-AATGAA
1 TAAAAAATAA-TAAATGAA
*
10605144 TATGAAAA-AATAAAT
1 TA-AAAAATAATAAAT
10605159 ATTGATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 1 0.04
18 22 0.79
19 5 0.18
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (18 bp):
TAAAAAATAATAAATGAA
Found at i:10607268 original size:20 final size:20
Alignment explanation
Indices: 10607240--10607280 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10607230 TTTCGTTTAG
10607240 CTCACATGAGCTTCAGTTAA
1 CTCACATGAGCTTCAGTTAA
* *
10607260 CTCATATGAGTTTCAGTTAA
1 CTCACATGAGCTTCAGTTAA
10607280 C
1 C
10607281 CCTAATGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (20 bp):
CTCACATGAGCTTCAGTTAA
Found at i:10607292 original size:20 final size:20
Alignment explanation
Indices: 10607245--10607297 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
10607235 TTTAGCTCAC
* *
10607245 ATGAGCTTCAGTTAACTCAT
1 ATGAGTTTCAGTTAACCCAT
10607265 ATGAGTTTCAGTTAACCC-T
1 ATGAGTTTCAGTTAACCCAT
*
10607284 AATGGGTTTCAGTT
1 -ATGAGTTTCAGTT
10607298 CAACTCTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (20 bp):
ATGAGTTTCAGTTAACCCAT
Found at i:10607334 original size:42 final size:42
Alignment explanation
Indices: 10607251--10607367 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
10607241 TCACATGAGC
* * *
10607251 TTCAGTT-AACTCATATGAGTTTCAGTTAACCCTAAT-GGGT
1 TTCAGTTCAACTCTTACGAGTTTCAGTTAACCCTAATAGGTT
* *
10607291 TTCAGTTCAACTCTTACGAGTTTTAGCTTAACCCTACTAGGTT
1 TTCAGTTCAACTCTTACGAGTTTCAG-TTAACCCTAATAGGTT
* * * *
10607334 TTC-GTTCAGCTCTTATGAGCTTCTGTTTAACCCT
1 TTCAGTTCAACTCTTACGAGTTTCAG-TTAACCCT
10607368 TAAGGGTTTT
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 7 0.11
41 15 0.24
42 35 0.56
43 6 0.10
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (42 bp):
TTCAGTTCAACTCTTACGAGTTTCAGTTAACCCTAATAGGTT
Done.