Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 344 of 345
Found at i:102383013 original size:32 final size:33
Alignment explanation
Indices: 102382976--102383047 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
102382966 TAACTTTATG
*
102382976 AAATATTTT-TA-AGAAACTTATCAAACAACAGA
1 AAATATTTTATACAGAAACATA-CAAACAACAGA
** *
102383008 AAATATTTTATACAGATTCATACAAACACCAGA
1 AAATATTTTATACAGAAACATACAAACAACAGA
102383041 AAATATT
1 AAATATT
102383048 GACTTTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 9 0.26
33 19 0.56
34 6 0.18
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (33 bp):
AAATATTTTATACAGAAACATACAAACAACAGA
Found at i:102385944 original size:25 final size:26
Alignment explanation
Indices: 102385901--102385950 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
102385891 CTTTCATGGT
* *
102385901 AAAATTATGATATTCTCTTTATTTAA
1 AAAATTATGAAATTCTCTTAATTTAA
*
102385927 AAAATTATTAAATT-TCTTAATTTA
1 AAAATTATGAAATTCTCTTAATTTA
102385951 TTAATTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (26 bp):
AAAATTATGAAATTCTCTTAATTTAA
Found at i:102388215 original size:36 final size:34
Alignment explanation
Indices: 102388128--102388219 Score: 98
Period size: 33 Copynumber: 2.7 Consensus size: 34
102388118 TTCTTCAACC
* * *
102388128 TCATCTTCTACAGCACCATTTTCTTCATAATCTA
1 TCATCTTCTACAACATCATTTTCTTCAAAATCTA
* *
102388162 T-ATCTTCTAAAATATCATTTTCTTCACAAAGTACT-
1 TCATCTTCTACAACATCATTTTCTTCA-AAA-T-CTA
102388197 TCATCTTCTACAACATCATTTTC
1 TCATCTTCTACAACATCATTTTC
102388220 ATCCTGTACA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
33 21 0.45
34 3 0.06
35 2 0.04
36 21 0.45
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.42
Consensus pattern (34 bp):
TCATCTTCTACAACATCATTTTCTTCAAAATCTA
Found at i:102388220 original size:21 final size:21
Alignment explanation
Indices: 102388196--102388240 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
102388186 CACAAAGTAC
* *
102388196 TTCATCTTCTACAACATCATT
1 TTCATCCTCTACAACACCATT
*
102388217 TTCATCCTGTACAACACCATT
1 TTCATCCTCTACAACACCATT
102388238 TTC
1 TTC
102388241 TCCATAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.31, G:0.02, T:0.40
Consensus pattern (21 bp):
TTCATCCTCTACAACACCATT
Found at i:102388262 original size:21 final size:21
Alignment explanation
Indices: 102388238--102388321 Score: 72
Period size: 18 Copynumber: 4.3 Consensus size: 21
102388228 CAACACCATT
*
102388238 TTCTCCATAAAGTACTTCATC
1 TTCTTCATAAAGTACTTCATC
* * *
102388259 TTCTTC-TACA--ACATCATT
1 TTCTTCATAAAGTACTTCATC
*
102388277 TTCTTCATAAAGTACTTCACC
1 TTCTTCATAAAGTACTTCATC
*
102388298 TTCTTCA-ACA--ACTTCATC
1 TTCTTCATAAAGTACTTCATC
102388316 TTCTTC
1 TTCTTC
102388322 GGTTACCTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
18 25 0.50
19 3 0.06
20 5 0.10
21 17 0.34
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.42
Consensus pattern (21 bp):
TTCTTCATAAAGTACTTCATC
Found at i:102388270 original size:39 final size:39
Alignment explanation
Indices: 102388226--102388309 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
102388216 TTTCATCCTG
*
102388226 TACAACACCATTTTCTCCATAAAGTACTTCATCTTCTTC
1 TACAACACCATTTTCTCCATAAAGTACTTCACCTTCTTC
* *
102388265 TACAACATCATTTTCTTCATAAAGTACTTCACCTTCTTC
1 TACAACACCATTTTCTCCATAAAGTACTTCACCTTCTTC
*
102388304 AACAAC
1 TACAAC
102388310 TTCATCTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.30, G:0.02, T:0.37
Consensus pattern (39 bp):
TACAACACCATTTTCTCCATAAAGTACTTCACCTTCTTC
Found at i:102388320 original size:39 final size:39
Alignment explanation
Indices: 102388227--102388321 Score: 127
Period size: 39 Copynumber: 2.4 Consensus size: 39
102388217 TTCATCCTGT
* * * * *
102388227 ACAACACCATTTTCTCCATAAAGTACTTCATCTTCTTCT
1 ACAACATCATCTTCTTCATAAAGTACTTCACCTTCTTCA
*
102388266 ACAACATCATTTTCTTCATAAAGTACTTCACCTTCTTCA
1 ACAACATCATCTTCTTCATAAAGTACTTCACCTTCTTCA
*
102388305 ACAACTTCATCTTCTTC
1 ACAACATCATCTTCTTC
102388322 GGTTACCTCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.28, C:0.31, G:0.02, T:0.39
Consensus pattern (39 bp):
ACAACATCATCTTCTTCATAAAGTACTTCACCTTCTTCA
Found at i:102388344 original size:3 final size:3
Alignment explanation
Indices: 102388329--102388359 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
102388319 TTCGGTTACC
*
102388329 TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
102388360 TGTCATCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:102392451 original size:2 final size:2
Alignment explanation
Indices: 102392444--102392475 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
102392434 TAGCTTTTAG
102392444 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102392476 TGGTACAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102394519 original size:4 final size:4
Alignment explanation
Indices: 102394510--102394548 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
102394500 GAGCAAACGT
102394510 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA GAAA -AAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
102394549 GGAAATTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.18
4 27 0.82
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:102397528 original size:14 final size:14
Alignment explanation
Indices: 102397509--102397538 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
102397499 TTAAACCGAG
102397509 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
102397523 ACCAATCCAATTCA
1 ACCAATCCAAATCA
102397537 AC
1 AC
102397539 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:102401906 original size:37 final size:37
Alignment explanation
Indices: 102401856--102401929 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
102401846 GCGATGCTCA
102401856 ATGCTAGGATAATAAGGGACAGATCTAGCCTTTTTTC
1 ATGCTAGGATAATAAGGGACAGATCTAGCCTTTTTTC
102401893 ATGCTAGGATAATAAGGGACAGATCTAGCCTTTTTTC
1 ATGCTAGGATAATAAGGGACAGATCTAGCCTTTTTTC
102401930 TTCCCCTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (37 bp):
ATGCTAGGATAATAAGGGACAGATCTAGCCTTTTTTC
Found at i:102411079 original size:22 final size:22
Alignment explanation
Indices: 102411036--102411091 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
102411026 TATAAAAATA
* * *
102411036 AATTTATTTTAGTCATTCATTT
1 AATTTTTTTTAATCATTAATTT
*
102411058 AATTTTTTTTAATCCTTAATTT
1 AATTTTTTTTAATCATTAATTT
*
102411080 TATATTTTTTTA
1 AAT-TTTTTTTA
102411092 TTAAAAGTCG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (22 bp):
AATTTTTTTTAATCATTAATTT
Found at i:102411417 original size:16 final size:15
Alignment explanation
Indices: 102411389--102411427 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
102411379 CAGTTTGGAG
*
102411389 TTTTTTTTCATTTTA
1 TTTTTTTTAATTTTA
*
102411404 TTTTTCTTTAATTTTG
1 TTTTT-TTTAATTTTA
102411420 TTTTTTTT
1 TTTTTTTT
102411428 TTAAATCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTTTTAATTTTA
Found at i:102421213 original size:81 final size:82
Alignment explanation
Indices: 102421072--102421237 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 82
102421062 TATTTTAAAT
* * * * *
102421072 AGGGAATAAATTATATTCGGATGATCTTAAAAAGTATAATTTTTTATGCACCAATAAAATAGTGC
1 AGGGAATAAATTATATTAGGATGATCCTAAAAAG-ATAATTTTTTACGAACCAATAAAATAATGC
102421137 CACATCATTAAAATTTAA
65 CACATCATTAAAATTTAA
* *
102421155 AGGGAATAAATTCTATTAGGATTATCCTAAAAA-A-AATATTTTTACGAACCAATAAAATAATGC
1 AGGGAATAAATTATATTAGGATGATCCTAAAAAGATAAT-TTTTTACGAACCAATAAAATAATGC
102421218 CACATCATTAAAATTTAA
65 CACATCATTAAAATTTAA
102421236 AG
1 AG
102421238 ATAAAAAAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.04
81 43 0.57
83 29 0.39
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (82 bp):
AGGGAATAAATTATATTAGGATGATCCTAAAAAGATAATTTTTTACGAACCAATAAAATAATGCC
ACATCATTAAAATTTAA
Found at i:102425747 original size:28 final size:28
Alignment explanation
Indices: 102425707--102425764 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
102425697 TTACATTGAC
102425707 TTATATGAGGTTAGCTAAAGTTTAAGAT
1 TTATATGAGGTTAGCTAAAGTTTAAGAT
102425735 TTATATGAGGTTAGCTAAAGTTTAAGAT
1 TTATATGAGGTTAGCTAAAGTTTAAGAT
102425763 TT
1 TT
102425765 TTGATCACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.41
Consensus pattern (28 bp):
TTATATGAGGTTAGCTAAAGTTTAAGAT
Found at i:102430745 original size:18 final size:16
Alignment explanation
Indices: 102430706--102430745 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 16
102430696 GTCGAAATTA
102430706 GAAATTATAAATTTTT
1 GAAATTATAAATTTTT
102430722 -AAATTATAATATTTTGT
1 GAAATTATAA-ATTTT-T
102430739 GAAATTA
1 GAAATTA
102430746 CAGGAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 1 0.05
18 6 0.29
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (16 bp):
GAAATTATAAATTTTT
Found at i:102432201 original size:28 final size:26
Alignment explanation
Indices: 102432156--102432209 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
102432146 TTACAACTTA
* *
102432156 CAAAAGGAGGGTTAAAAGAGGAAAAC
1 CAAAAGGAGGGTGAAAAGAAGAAAAC
102432182 CAAAAGGAGTGGGTGAAAAGAAGAAAAC
1 CAAAAGGA--GGGTGAAAAGAAGAAAAC
102432210 AGAGGAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
28 16 0.67
ACGTcount: A:0.54, C:0.07, G:0.31, T:0.07
Consensus pattern (26 bp):
CAAAAGGAGGGTGAAAAGAAGAAAAC
Found at i:102438569 original size:14 final size:14
Alignment explanation
Indices: 102438548--102438581 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
102438538 GACATATTCT
102438548 TTTAATATT-TATA
1 TTTAATATTATATA
102438561 TTATAATATTATATA
1 TT-TAATATTATATA
102438576 TTTAAT
1 TTTAAT
102438582 TTTCATAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 11 0.58
15 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTAATATTATATA
Found at i:102440710 original size:18 final size:19
Alignment explanation
Indices: 102440675--102440710 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102440665 AAAATTACGA
102440675 AAAATTCTAAATATTTATG
1 AAAATTCTAAATATTTATG
102440694 AAAATTCTAAA-ATTTAT
1 AAAATTCTAAATATTTAT
102440711 TTATTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (19 bp):
AAAATTCTAAATATTTATG
Found at i:102449015 original size:13 final size:14
Alignment explanation
Indices: 102448997--102449033 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
102448987 ATAAATCACT
102448997 TTTTTTTTTC-GAA
1 TTTTTTTTTCGGAA
102449010 TTTTTTTTTCGGAA
1 TTTTTTTTTCGGAA
102449024 TTTTTTTTTC
1 TTTTTTTTTC
102449034 AAACTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.73
Consensus pattern (14 bp):
TTTTTTTTTCGGAA
Found at i:102449015 original size:14 final size:15
Alignment explanation
Indices: 102448996--102449032 Score: 60
Period size: 13 Copynumber: 2.6 Consensus size: 15
102448986 CATAAATCAC
102448996 TTTTTTTTTTC-GAA
1 TTTTTTTTTTCGGAA
102449010 -TTTTTTTTTCGGAA
1 TTTTTTTTTTCGGAA
102449024 TTTTTTTTT
1 TTTTTTTTT
102449033 CAAACTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.48
14 3 0.14
15 8 0.38
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (15 bp):
TTTTTTTTTTCGGAA
Found at i:102452880 original size:31 final size:30
Alignment explanation
Indices: 102452844--102452912 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
102452834 GATTAAATTA
* *
102452844 AAATTAAAGTTCCAAGTATACATTTGAACC
1 AAATTAAAGTTCCAAATATACAATTGAACC
* * *
102452874 ATAATTAAAGTTTCAAATATATAATTGCACC
1 A-AATTAAAGTTCCAAATATACAATTGAACC
102452905 AAATTAAA
1 AAATTAAA
102452913 ATTCATGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.32
Consensus pattern (30 bp):
AAATTAAAGTTCCAAATATACAATTGAACC
Found at i:102457788 original size:46 final size:46
Alignment explanation
Indices: 102457735--102457910 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
102457725 TATTTGGGCA
102457735 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
102457781 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
102457828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
102457874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
102457911 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:102457890 original size:93 final size:93
Alignment explanation
Indices: 102457731--102457902 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
102457721 GGGATATTTG
* *
102457731 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
102457796 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
102457824 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
102457889 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
102457903 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:102459615 original size:39 final size:39
Alignment explanation
Indices: 102459564--102459667 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
102459554 TCAGCTCTGG
102459564 TGTGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTA
1 TGTGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTA
*
102459603 TGTGCTTTAGTTAGCCTTCGGGCTTCCGTTTAGCACTTA
1 TGTGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTA
*
102459642 TGTGCTTCAGTTAGACTTCGGGCTTC
1 TGTGCTTCAGTTAGCCTTCGGGCTTC
102459668 AGATCACAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
TGTGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTA
Found at i:102459649 original size:21 final size:21
Alignment explanation
Indices: 102459585--102459649 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
102459575 TAGCCTTCGG
102459585 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
** * *
102459606 GCTTTAG-TTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
102459624 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
102459645 GCTTC
1 GCTTC
102459650 AGTTAGACTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.18
19 8 0.24
20 8 0.24
21 11 0.33
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.42
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:102459668 original size:18 final size:18
Alignment explanation
Indices: 102459567--102459669 Score: 71
Period size: 18 Copynumber: 5.4 Consensus size: 18
102459557 GCTCTGGTGT
*
102459567 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * *
102459585 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
* *
102459606 GCTTTAGTTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * *
102459624 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
102459645 GCTTCAGTTAGACTTCGG
1 GCTTCAGTTAGACTTCGG
102459663 GCTTCAG
1 GCTTCAG
102459670 ATCACAATGT
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
18 20 0.32
19 15 0.24
20 14 0.23
21 13 0.21
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (18 bp):
GCTTCAGTTAGACTTCGG
Found at i:102462413 original size:28 final size:28
Alignment explanation
Indices: 102462360--102462417 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 28
102462350 AGTGATAAAA
* *
102462360 TATAAATTTATAATTATTAATTTAAAATT
1 TATAAATTTAAAAATATTAA-TTAAAATT
102462389 TATAAATTATAAAAATATTAA-TAAAATT
1 TATAAATT-TAAAAATATTAATTAAAATT
102462417 T
1 T
102462418 TTTTATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 8 0.31
29 8 0.31
30 10 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
TATAAATTTAAAAATATTAATTAAAATT
Found at i:102480333 original size:24 final size:24
Alignment explanation
Indices: 102480285--102480334 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
102480275 GAATTAAAAC
*
102480285 CTGAGTGATTGTTTTGTCGATTAA
1 CTGAGTGATTGTTTTGTCGACTAA
102480309 CTGAGTGATTGTTTTGTC-ACCTAA
1 CTGAGTGATTGTTTTGTCGA-CTAA
102480333 CT
1 CT
102480335 CAAAGTTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.44
Consensus pattern (24 bp):
CTGAGTGATTGTTTTGTCGACTAA
Found at i:102485607 original size:16 final size:15
Alignment explanation
Indices: 102485582--102485615 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
102485572 TTTCGGAGAT
*
102485582 TTTTACAATATTAATA
1 TTTTAAAATATTAA-A
102485598 TTTTAAAATATTAAA
1 TTTTAAAATATTAAA
102485613 TTT
1 TTT
102485616 CAAACTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAAAATATTAAA
Found at i:102488650 original size:16 final size:17
Alignment explanation
Indices: 102488631--102488666 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
102488621 ACAACTAAAA
102488631 TTTTTAAATTTTAAT-T
1 TTTTTAAATTTTAATAT
*
102488647 TTTTTAATTTTTAATAT
1 TTTTTAAATTTTAATAT
102488664 TTT
1 TTT
102488667 GAATAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTAAATTTTAATAT
Found at i:102494109 original size:17 final size:17
Alignment explanation
Indices: 102494087--102494121 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
102494077 AATTTATATT
102494087 TTATAATTTGACACAAA
1 TTATAATTTGACACAAA
102494104 TTATAATTTGACACAAA
1 TTATAATTTGACACAAA
102494121 T
1 T
102494122 AAATAGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (17 bp):
TTATAATTTGACACAAA
Found at i:102496019 original size:46 final size:46
Alignment explanation
Indices: 102495883--102496009 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
102495873 TATATATACA
* * * *
102495883 CATCTCATACATATCTCACATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* *
102495929 CATCTCATACACGTTTTGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
102495975 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
102496010 CGCCACATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.24, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:102496064 original size:47 final size:47
Alignment explanation
Indices: 102496033--102496367 Score: 589
Period size: 47 Copynumber: 7.1 Consensus size: 47
102496023 CACTTCCACG
**
102496033 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
102496080 TTCATCACATTGGCTATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
102496127 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
102496174 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
102496221 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
102496268 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
102496315 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
102496362 TTCATC
1 TTCATC
102496368 TCATAAAATC
Statistics
Matches: 272, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:102498307 original size:2 final size:2
Alignment explanation
Indices: 102498300--102498335 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
102498290 ACATTCGGCA
102498300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102498336 TAATGACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102505659 original size:16 final size:16
Alignment explanation
Indices: 102505638--102505674 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
102505628 AATTCAAAAT
* *
102505638 TAATTTGAATTTGAAA
1 TAATTTAAATCTGAAA
102505654 TAATTTAAATCTGAAA
1 TAATTTAAATCTGAAA
102505670 TAATT
1 TAATT
102505675 CGAACTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (16 bp):
TAATTTAAATCTGAAA
Found at i:102508911 original size:12 final size:12
Alignment explanation
Indices: 102508894--102508919 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102508884 CTTAGATTCT
102508894 CACCGTAAGGTC
1 CACCGTAAGGTC
102508906 CACCGTAAGGTC
1 CACCGTAAGGTC
102508918 CA
1 CA
102508920 TAGAAACCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CACCGTAAGGTC
Found at i:102514934 original size:26 final size:26
Alignment explanation
Indices: 102514905--102515012 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
102514895 TGGTACAAAT
102514905 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102514931 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102514957 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102514983 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102515009 TGAT
1 TGAT
102515013 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102519140 original size:46 final size:46
Alignment explanation
Indices: 102519078--102519398 Score: 430
Period size: 46 Copynumber: 7.0 Consensus size: 46
102519068 AGTGTGCTCT
*
102519078 CTGATA-GAAAGTGTGTAAGACCATGGTTGAAATATACCATGGCAAC
1 CTGATATGAAA-TGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
102519124 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
102519170 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
102519216 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
102519262 GTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
102519308 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
102519355 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
102519399 TCATGTCGAA
Statistics
Matches: 251, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 208 0.83
47 42 0.17
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:102519711 original size:17 final size:17
Alignment explanation
Indices: 102519689--102519722 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
102519679 ATGATGGTGC
*
102519689 ATGAAATGATTGATATA
1 ATGAAATGAATGATATA
102519706 ATGAAATGAATGATATA
1 ATGAAATGAATGATATA
102519723 TGTTATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
ATGAAATGAATGATATA
Found at i:102520308 original size:27 final size:26
Alignment explanation
Indices: 102520268--102520372 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
102520258 AGGAAGCGTC
* *
102520268 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-AATATCTGAT
*
102520295 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTCTGCCAC-AATATCTGAT
102520322 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
102520349 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
102520373 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.13
27 60 0.87
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:102527631 original size:24 final size:25
Alignment explanation
Indices: 102527576--102527643 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
102527566 AATATTTAAC
*
102527576 TCTAAAAAATAAAAAGAATTTAAAA
1 TCTAAAAAATAAAAAGAATATAAAA
* *
102527601 TCT-AAAAATAATAATAA-ATAAAA
1 TCTAAAAAATAAAAAGAATATAAAA
*
102527624 TTTAAAAAATACAAAA-AATA
1 TCTAAAAAATA-AAAAGAATA
102527644 GTCAATTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 7 0.20
24 21 0.60
25 7 0.20
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.25
Consensus pattern (25 bp):
TCTAAAAAATAAAAAGAATATAAAA
Found at i:102539333 original size:35 final size:36
Alignment explanation
Indices: 102539289--102539455 Score: 196
Period size: 35 Copynumber: 4.6 Consensus size: 36
102539279 TCCTCATTGA
** *
102539289 AATACCATACCTACATTTTTCAACTCAATATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
102539324 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
102539364 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
*
102539399 AATACCATACCTACATTTCACAACTCAGTA-AGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
*
102539434 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
102539456 CTTTGTCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
35 86 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:102539372 original size:75 final size:73
Alignment explanation
Indices: 102539284--102539455 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
102539274 GGTTTTCCTC
** * **
102539284 ATTGAAATACCATACCTACATTTTTCAACTCAATATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAATAT-GGATAATACCATACCTACATTTCACAAC
*
102539348 TCAGTATGG
65 TCAGTAAGG
* *
102539357 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAATATGGATAATACCATACCTACATTTCACAA
102539422 CTCAGTAAGG
64 CTCAGTAAGG
102539432 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
102539456 CTTTGTCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAATATGGATAATACCATACCTACATTTCACAACT
CAGTAAGG
Found at i:102544968 original size:20 final size:21
Alignment explanation
Indices: 102544931--102544978 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
102544921 ATATATGTAT
*
102544931 TTAATTATTAATAGATATTTA
1 TTAATTATTAAAAGATATTTA
102544952 TTAATTA-TAAAAGATATTTA
1 TTAATTATTAAAAGATATTTA
102544972 TTAATTA
1 TTAATTA
102544979 AATAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TTAATTATTAAAAGATATTTA
Found at i:102545484 original size:10 final size:9
Alignment explanation
Indices: 102545458--102545488 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
102545448 TTATGTGTTC
102545458 TTTATTTTA
1 TTTATTTTA
102545467 TTTATTTTA
1 TTTATTTTA
102545476 TTCTATTTTA
1 TT-TATTTTA
102545486 TTT
1 TTT
102545489 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:102549922 original size:5 final size:5
Alignment explanation
Indices: 102549912--102549952 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
102549902 TTATGTGTTC
*
102549912 TTTAT TTTA- TTTAT TTTA- TTTAT TTTAT TCTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
102549953 TCACAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:102549926 original size:9 final size:9
Alignment explanation
Indices: 102549912--102549951 Score: 71
Period size: 9 Copynumber: 4.3 Consensus size: 9
102549902 TTATGTGTTC
102549912 TTTATTTTA
1 TTTATTTTA
102549921 TTTATTTTA
1 TTTATTTTA
102549930 TTTATTTTA
1 TTTATTTTA
102549939 TTCTATTTTA
1 TT-TATTTTA
102549949 TTT
1 TTT
102549952 TTCACAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 21 0.70
10 9 0.30
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTATTTTA
Found at i:102549931 original size:14 final size:14
Alignment explanation
Indices: 102549912--102549951 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
102549902 TTATGTGTTC
102549912 TTTATTTTATTTAT
1 TTTATTTTATTTAT
102549926 TTTA-TTTATTTTAT
1 TTTATTTTA-TTTAT
*
102549940 TCTATTTTATTT
1 TTTATTTTATTT
102549952 TTCACAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 4 0.17
14 15 0.65
15 4 0.17
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTATTTTATTTAT
Found at i:102551179 original size:51 final size:53
Alignment explanation
Indices: 102551094--102551212 Score: 125
Period size: 51 Copynumber: 2.3 Consensus size: 53
102551084 AAGTGTCACC
* * *
102551094 TTACTGTTACTGTTCCGGATTCATTTCGAAGAGGTA-CTCCGTAC-CTTACTG
1 TTACTGTTACTATTCCGGATTCATTCCGAAGAGGTATCTACGTACTCTTACTG
* ** * * *
102551145 TTACTGTTACTATTTCGGATTTGTTCCGATGAGGTATTCTATGTACTGTTACTG
1 TTACTGTTACTATTCCGGATTCATTCCGAAGAGGTA-TCTACGTACTCTTACTG
*
102551199 TTACTGTTTCTATT
1 TTACTGTTACTATT
102551213 ACCATTACGG
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
51 30 0.55
53 6 0.11
54 19 0.35
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (53 bp):
TTACTGTTACTATTCCGGATTCATTCCGAAGAGGTATCTACGTACTCTTACTG
Found at i:102551354 original size:18 final size:18
Alignment explanation
Indices: 102551328--102551371 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
102551318 CAAATAAAGG
**
102551328 TACTGAATATCTGACTGC
1 TACTGAATAAATGACTGC
*
102551346 TATTGAATAAATGACTGC
1 TACTGAATAAATGACTGC
102551364 TACTGAAT
1 TACTGAAT
102551372 GATTGAATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTGC
Found at i:102552975 original size:3 final size:3
Alignment explanation
Indices: 102552967--102553005 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
102552957 TCAAGCCTGA
*
102552967 CTT CTT CTT CTT CTT TTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
102553006 TTATAAGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:102555164 original size:20 final size:20
Alignment explanation
Indices: 102555119--102555166 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
102555109 CCATAAGAAA
102555119 CATTTTA-TAATTTTTCTAT
1 CATTTTATTAATTTTTCTAT
* * *
102555138 AACTTTTATTGATTTTTTTAT
1 CA-TTTTATTAATTTTTCTAT
102555159 CATTTTAT
1 CATTTTAT
102555167 ATCAAAAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 11 0.48
21 11 0.48
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (20 bp):
CATTTTATTAATTTTTCTAT
Found at i:102555270 original size:17 final size:19
Alignment explanation
Indices: 102555248--102555287 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
102555238 AAATTCTATT
102555248 TTTAATAA-ATTT-TAAAA
1 TTTAATAATATTTCTAAAA
*
102555265 TTTAATAATTTTTCTAAAA
1 TTTAATAATATTTCTAAAA
102555284 TTTA
1 TTTA
102555288 TTTTTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 3 0.15
19 9 0.45
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAATAATATTTCTAAAA
Found at i:102555483 original size:88 final size:86
Alignment explanation
Indices: 102555327--102555495 Score: 196
Period size: 88 Copynumber: 1.9 Consensus size: 86
102555317 GAGCAGGGTT
* * * * *
102555327 TTAATAGCTTTTTTGAAAAATTTTAAGTGTCTTTTTGATATATTTTGAAAGCTCAATTACCCAGT
1 TTAATAGCTTTTTTGAAAAATTTGAAGTGCCTTTTTGATACATTTTGAAAGCTCAAGTACCCAAT
**
102555392 TAAGTGGAAAAAAAAATGGGC
66 TAAGTACAAAAAAAAATGGGC
* * * * *
102555413 TTAATTGCTTTTTTTGAAAAAATTTGAAG-GCCTTTTTTTATACATTTTGAAAGTTGAAGTACTC
1 TTAATAGC-TTTTTTG-AAAAATTTGAAGTGCC-TTTTTGATACATTTTGAAAGCTCAAGTACCC
102555477 AATTAAGTACAAAAAAAAA
63 AATTAAGTACAAAAAAAAA
102555496 AAGTTTAATT
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
86 7 0.10
87 9 0.13
88 52 0.76
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (86 bp):
TTAATAGCTTTTTTGAAAAATTTGAAGTGCCTTTTTGATACATTTTGAAAGCTCAAGTACCCAAT
TAAGTACAAAAAAAAATGGGC
Found at i:102555505 original size:87 final size:87
Alignment explanation
Indices: 102555326--102555513 Score: 195
Period size: 88 Copynumber: 2.2 Consensus size: 87
102555316 AGAGCAGGGT
* * * * *
102555326 TTTAATAGC-TTTTTTGAAAAATTTTAAGTGTCTTTTTGATATATTTTGAAAGCTCAATTACCCA
1 TTTAATTGCTTTTTTTGAAAAATTTGAAGTGCCTTTTTGATACATTTTGAAAGCTCAAGTACCCA
* ** **
102555390 GTTAAGTGGAAAAAAAAATGGG
66 ATTAAGTACAAAAAAAAATAAG
* * * * *
102555412 CTTAATTGCTTTTTTTGAAAAAATTTGAAG-GCCTTTTTTTATACATTTTGAAAGTTGAAGTACT
1 TTTAATTGCTTTTTTTG-AAAAATTTGAAGTGCC-TTTTTGATACATTTTGAAAGCTCAAGTACC
102555476 CAATTAAGTACAAAAAAAAA-AAG
64 CAATTAAGTACAAAAAAAAATAAG
102555499 TTTAATT-CTTTTTTT
1 TTTAATTGCTTTTTTT
102555514 TTTTAAAGTT
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
86 15 0.18
87 16 0.19
88 52 0.63
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (87 bp):
TTTAATTGCTTTTTTTGAAAAATTTGAAGTGCCTTTTTGATACATTTTGAAAGCTCAAGTACCCA
ATTAAGTACAAAAAAAAATAAG
Found at i:102563671 original size:23 final size:25
Alignment explanation
Indices: 102563645--102563691 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
102563635 TTTAGTTGAA
*
102563645 AAAAT-TAAA-AAAATTATTATTAT
1 AAAATGTAAATAAAATAATTATTAT
102563668 AAAATGTAAATTAAAATAATTATT
1 AAAATGTAAA-TAAAATAATTATT
102563692 TATTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
26 11 0.55
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
AAAATGTAAATAAAATAATTATTAT
Found at i:102563709 original size:29 final size:29
Alignment explanation
Indices: 102563646--102563703 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
102563636 TTAGTTGAAA
102563646 AAATTAAAAAAATTATTATTATAAAATGT
1 AAATTAAAAAAATTATTATTATAAAATGT
*
102563675 AAATTAAAATAATTATTTATT-TAAAATGT
1 AAATTAAAAAAATTA-TTATTATAAAATGT
102563704 TCATTATAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (29 bp):
AAATTAAAAAAATTATTATTATAAAATGT
Found at i:102565606 original size:25 final size:25
Alignment explanation
Indices: 102565578--102565636 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 25
102565568 AATTTTTTAT
102565578 TTTAAAATATTAATTTTATTAAAAA
1 TTTAAAATATTAATTTTATTAAAAA
* *
102565603 TTT--AAT-TTAATTTTTTTAATAA
1 TTTAAAATATTAATTTTATTAAAAA
*
102565625 TATAAAA-ATTAA
1 TTTAAAATATTAA
102565637 ACTACTCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 16 0.57
23 3 0.11
24 6 0.21
25 3 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTAAAATATTAATTTTATTAAAAA
Found at i:102567353 original size:2 final size:2
Alignment explanation
Indices: 102567346--102567376 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
102567336 TATTAAGCTA
102567346 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102567377 AGCAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102575480 original size:35 final size:35
Alignment explanation
Indices: 102575436--102575602 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
102575426 TCCTCATTGA
** *
102575436 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* *** *
102575471 AATGCCATACCTACATTTTTTAACTCAATATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
102575511 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
102575546 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
102575581 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
102575603 CTTTTCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 87 0.76
39 3 0.03
40 25 0.22
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:102575571 original size:75 final size:73
Alignment explanation
Indices: 102575431--102575602 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 73
102575421 GGTTTTCCTC
** * * ***
102575431 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGAAATGCCATACCTACATTTTTTAACT
1 ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
102575496 CAATATGG
66 CAATATGG
*
102575504 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
*
102575568 ACTCAGTATGG
63 ACTCAATATGG
102575579 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
102575603 CTTTTCCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 56 0.64
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAATATGG
Found at i:102577352 original size:16 final size:17
Alignment explanation
Indices: 102577321--102577353 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
102577311 TTCATAAGTA
102577321 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
102577338 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
102577354 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:102577951 original size:46 final size:46
Alignment explanation
Indices: 102577634--102577953 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
102577624 TTATCTTTGA
* * * * *
102577634 CATGATGCCATGGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* *** *
102577680 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** *
102577726 TACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
102577772 CATGTTGCCATGGTATCTTTTAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
102577818 CCTATTGCCATGGTATCTTTCTACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
102577864 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
102577910 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
102577954 TTCAGAAAGC
Statistics
Matches: 246, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 242 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:102580743 original size:30 final size:30
Alignment explanation
Indices: 102580709--102580768 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
102580699 TGAGTTAGGT
102580709 TGCTAAAATAGGATTCGTCAACTCGACTAA
1 TGCTAAAATAGGATTCGTCAACTCGACTAA
102580739 TGCTAAAATAGGATTCGTCAACTCGACTAA
1 TGCTAAAATAGGATTCGTCAACTCGACTAA
102580769 CTCGAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (30 bp):
TGCTAAAATAGGATTCGTCAACTCGACTAA
Found at i:102582022 original size:16 final size:16
Alignment explanation
Indices: 102582003--102582033 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102581993 ATATTAATTT
*
102582003 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
102582019 TATTTAATATTAAAA
1 TATTTAATATTAAAA
102582034 CAATATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:102599994 original size:22 final size:22
Alignment explanation
Indices: 102599969--102600028 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
102599959 ATCCTTGTAT
102599969 TTTAAAATATTAAATAAATAAA
1 TTTAAAATATTAAATAAATAAA
** *
102599991 TTTAACGGTGTT-AATAAATAAA
1 TTTAA-AATATTAAATAAATAAA
* *
102600013 TTTAAATTTTTAAATA
1 TTTAAAATATTAAATA
102600029 TAAAACATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 3 0.10
22 24 0.80
23 3 0.10
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (22 bp):
TTTAAAATATTAAATAAATAAA
Found at i:102616334 original size:111 final size:111
Alignment explanation
Indices: 102616140--102616357 Score: 328
Period size: 111 Copynumber: 2.0 Consensus size: 111
102616130 TTCTTCGTTG
* * * *
102616140 CTTGGTAGAGTTAAAAAATGAAAGAAGATAAAATAAAACATCTGAAAATTCATAATTTTAAACTA
1 CTTGGTAGAGTTAAAAAATAAAAGAAAATAAAATAAAAAATCTAAAAATTCATAATTTTAAACTA
* *
102616205 ACATCCACTTCTCTCTTATTTTCTCTCATCTCATCATTCCAATTTA
66 ACATACACTTCTCTCTTATTTTCTATCATCTCATCATTCCAATTTA
* * *
102616251 CTTGGTAGAGTTGAAAAATAAAAGAAAATAAAATAAAAAATTTAAAAATTCATAATTTTGAACTA
1 CTTGGTAGAGTTAAAAAATAAAAGAAAATAAAATAAAAAATCTAAAAATTCATAATTTTAAACTA
* * *
102616316 ACATATATTTCTCTCTTATTTTCTATCCTCTCATCATTCCAA
66 ACATACACTTCTCTCTTATTTTCTATCATCTCATCATTCCAA
102616358 ATTAGAAGAA
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
111 95 1.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (111 bp):
CTTGGTAGAGTTAAAAAATAAAAGAAAATAAAATAAAAAATCTAAAAATTCATAATTTTAAACTA
ACATACACTTCTCTCTTATTTTCTATCATCTCATCATTCCAATTTA
Found at i:102621448 original size:161 final size:162
Alignment explanation
Indices: 102621048--102621533 Score: 911
Period size: 162 Copynumber: 3.0 Consensus size: 162
102621038 GTTTTAAAAG
102621048 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
102621113 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
102621178 AAGGCGGATTCACTGTAACATAGATCATCACT
131 AAGGCGGATTCACTGTAACATAGATCATCACT
* *
102621210 TACGCAAATTTAATTGGTGGGAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
102621275 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
*
102621340 CAGG-GGATTCACTGTAACATAGATCATCACT
131 AAGGCGGATTCACTGTAACATAGATCATCACT
* *
102621371 TAATCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAACCTGTGTCT
1 TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
102621436 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
66 TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
*
102621501 AAGGTGGATTCACTGTAACATAGATCATCACT
131 AAGGCGGATTCACTGTAACATAGATCATCACT
102621533 T
1 T
102621534 TACACTCGTC
Statistics
Matches: 315, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
161 156 0.50
162 159 0.50
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (162 bp):
TAAGCAAATTTAATTGGTGGAAAAGATTATTACCCTAGTTTTGGACTGACTTGCAATCTGTGTCT
TAGATTGAAGATTGTCTGAAGGATCGTTATCCTAGCCTAGTCGGCATCTGTTTCCACATATGTTG
AAGGCGGATTCACTGTAACATAGATCATCACT
Found at i:102637563 original size:15 final size:15
Alignment explanation
Indices: 102637536--102637585 Score: 84
Period size: 15 Copynumber: 3.3 Consensus size: 15
102637526 ACGTACACCT
102637536 TTCA-TGATAGTGAAC
1 TTCATTGAT-GTGAAC
102637551 TTCATTGATGTGAAC
1 TTCATTGATGTGAAC
102637566 TTCATTGATGTGAAC
1 TTCATTGATGTGAAC
102637581 TTCAT
1 TTCAT
102637586 CATTAAGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (15 bp):
TTCATTGATGTGAAC
Found at i:102638766 original size:46 final size:45
Alignment explanation
Indices: 102638706--102638971 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
102638696 TTTGACATGA
* * * * * *
102638706 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
102638752 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
102638798 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
102638844 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
102638890 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
102638928 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
102638972 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:102638935 original size:38 final size:38
Alignment explanation
Indices: 102638884--102638959 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
102638874 ACATTTTATA
102638884 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
102638922 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
102638960 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:102641120 original size:11 final size:11
Alignment explanation
Indices: 102641104--102641155 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
102641094 TATACTAAAT
102641104 AAATAATAATA
1 AAATAATAATA
*
102641115 AAATAAT-ATT
1 AAATAATAATA
* *
102641125 AAATATCTCATA
1 AAATA-ATAATA
*
102641137 AAATATTAATA
1 AAATAATAATA
102641148 AAATAATA
1 AAATAATA
102641156 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:102642085 original size:16 final size:17
Alignment explanation
Indices: 102642056--102642096 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
102642046 ATATATATAT
*
102642056 AAAGTAAAAGGAATA-AA
1 AAAG-AAAAAGAATAGAA
102642073 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
102642090 AAAGAAA
1 AAAGAAA
102642097 GAAAGGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Found at i:102642152 original size:16 final size:16
Alignment explanation
Indices: 102642124--102642163 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
102642114 CAGAGAGCAG
*
102642124 GGGAAAGAAAGAAGGAA
1 GGGAAA-AAAGAAAGAA
102642141 GGGAAAAAAGAAAGAA
1 GGGAAAAAAGAAAGAA
102642157 -GGAAAAA
1 GGGAAAAA
102642164 GGGAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 9 0.41
17 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (16 bp):
GGGAAAAAAGAAAGAA
Found at i:102644091 original size:381 final size:381
Alignment explanation
Indices: 102643388--102644142 Score: 1483
Period size: 381 Copynumber: 2.0 Consensus size: 381
102643378 AAGAATTTTA
102643388 TTTTCCTAACCCTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGCAAAATGGTAATTTTTC
1 TTTTCCTAACCCTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGCAAAATGGTAATTTTTC
102643453 CTAGAGCATTAATTAAATGCATTAGAATATGAAATGAATGAAAATGATGATCAAATTTATTTATA
66 CTAGAGCATTAATTAAATGCATTAGAATATGAAATGAATGAAAATGATGATCAAATTTATTTATA
102643518 AAGATCCAGACGACTCAAAAATGAGACTTGATCGTGGAAAATAAAAGATATCGGATTAATGAAAT
131 AAGATCCAGACGACTCAAAAATGAGACTTGATCGTGGAAAATAAAAGATATCGGATTAATGAAAT
102643583 TATAAACACAAACAAGCAATGAGGTAAGTTTGTGTAACTTGAATTGTATTTTAAATACTTGAAAT
196 TATAAACACAAACAAGCAATGAGGTAAGTTTGTGTAACTTGAATTGTATTTTAAATACTTGAAAT
102643648 ATGTGGTTATGTGATGAAAATATGATTTGAATGTTCAATCCATGATAATTGATGAAATATTGCTA
261 ATGTGGTTATGTGATGAAAATATGATTTGAATGTTCAATCCATGATAATTGATGAAATATTGCTA
*
102643713 ATACTCGATATAAATTGAAAATAAAGCCCGGTTGAATGAAAGGGAAATTCGTGGAT
326 ATACGCGATATAAATTGAAAATAAAGCCCGGTTGAATGAAAGGGAAATTCGTGGAT
*
102643769 TTTTCCTAACCCTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGCTAAATGGTAATTTTTC
1 TTTTCCTAACCCTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGCAAAATGGTAATTTTTC
102643834 CTAGAGCATTAATTAAATGCATTAGAATATGAAATGAATGAAAATGATGATCAAATTTATTTATA
66 CTAGAGCATTAATTAAATGCATTAGAATATGAAATGAATGAAAATGATGATCAAATTTATTTATA
*
102643899 AAGATCCGGACGACTCAAAAATGAGACTTGATCGTGGAAAATAAAAGATATCGGATTAATGAAAT
131 AAGATCCAGACGACTCAAAAATGAGACTTGATCGTGGAAAATAAAAGATATCGGATTAATGAAAT
102643964 TATAAACACAAACAAGCAATGAGGTAAGTTTGTGTAACTTGAATTGTATTTTAAATACTTGAAAT
196 TATAAACACAAACAAGCAATGAGGTAAGTTTGTGTAACTTGAATTGTATTTTAAATACTTGAAAT
102644029 ATGTGGTTATGTGATGAAAATATGATTTGAATGTTCAATCCATGATAATTGATGAAATATTGCTA
261 ATGTGGTTATGTGATGAAAATATGATTTGAATGTTCAATCCATGATAATTGATGAAATATTGCTA
102644094 ATACGCGATATAAATTGAAAATAAAGCCCGGTTGAATGAAAGGGAAATT
326 ATACGCGATATAAATTGAAAATAAAGCCCGGTTGAATGAAAGGGAAATT
102644143 TGATGGATCT
Statistics
Matches: 371, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
381 371 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.32
Consensus pattern (381 bp):
TTTTCCTAACCCTAAGGATGAAATCGTCATTAATTAAAAGTTTAGGGGCAAAATGGTAATTTTTC
CTAGAGCATTAATTAAATGCATTAGAATATGAAATGAATGAAAATGATGATCAAATTTATTTATA
AAGATCCAGACGACTCAAAAATGAGACTTGATCGTGGAAAATAAAAGATATCGGATTAATGAAAT
TATAAACACAAACAAGCAATGAGGTAAGTTTGTGTAACTTGAATTGTATTTTAAATACTTGAAAT
ATGTGGTTATGTGATGAAAATATGATTTGAATGTTCAATCCATGATAATTGATGAAATATTGCTA
ATACGCGATATAAATTGAAAATAAAGCCCGGTTGAATGAAAGGGAAATTCGTGGAT
Found at i:102644507 original size:46 final size:46
Alignment explanation
Indices: 102644447--102644861 Score: 560
Period size: 46 Copynumber: 8.9 Consensus size: 46
102644437 GTGTGCTCTC
*
102644447 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * * *
102644493 TGCTATGCAATGTGTAAGACCATGGTTGAAAAATACCATGACAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
102644539 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
102644585 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
102644631 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * ** *
102644677 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
**
102644723 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * ** *
102644769 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * * *
102644815 TGACAGGAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATGAAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
102644862 TCATGTCAAA
Statistics
Matches: 334, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 308 0.92
50 26 0.08
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:102644593 original size:25 final size:25
Alignment explanation
Indices: 102644565--102644640 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
102644555 AGACCATGGT
102644565 TGAAAGATACAATGGCAACGTGATA
1 TGAAAGATACAATGGCAACGTGATA
** * * *
102644590 TGAAATG-TGTAA--G-ACCATGGT-
1 TGAAA-GATACAATGGCAACGTGATA
102644611 TGAAAGATACAATGGCAACGTGATA
1 TGAAAGATACAATGGCAACGTGATA
102644636 TGAAA
1 TGAAA
102644641 TGTGTAAGAC
Statistics
Matches: 35, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
20 1 0.03
21 8 0.23
22 5 0.14
23 2 0.06
24 5 0.14
25 13 0.37
26 1 0.03
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (25 bp):
TGAAAGATACAATGGCAACGTGATA
Found at i:102649197 original size:2 final size:2
Alignment explanation
Indices: 102649147--102649178 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
102649137 GGCATTTATG
102649147 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102649179 GTTAATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102650711 original size:13 final size:13
Alignment explanation
Indices: 102650693--102650718 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102650683 ACACAATTTA
102650693 GTAAACTTGAGTT
1 GTAAACTTGAGTT
102650706 GTAAACTTGAGTT
1 GTAAACTTGAGTT
102650719 TTAAGGTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
GTAAACTTGAGTT
Found at i:102663606 original size:19 final size:17
Alignment explanation
Indices: 102663572--102663606 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
102663562 TTAAAATAGT
102663572 AATAAAATTAACAATAA
1 AATAAAATTAACAATAA
102663589 AATAAAAGTTATACAATA
1 AATAAAA-TTA-ACAATA
102663607 TCTAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
AATAAAATTAACAATAA
Found at i:102665603 original size:81 final size:81
Alignment explanation
Indices: 102665468--102665637 Score: 288
Period size: 81 Copynumber: 2.1 Consensus size: 81
102665458 TGCGAATTTT
* *
102665468 TCACAGCTCGTATGAGCAGCATCGTGTAGCTTAACATTCTGACCCACAACTCATGTGAGCATATA
1 TCACAGCTCGTATAAGCAGCATCGTGTAGCTTAACACTCTGACCCACAACTCATGTGAGCATATA
*
102665533 CGGTTACATGTTACAG
66 CGGTTACATATTACAG
*
102665549 TCACAGCTCGTATAAGCAGCATCGTGTAGCTTAACAC-CTCGGCCCACAACTCATGTGAGCATAT
1 TCACAGCTCGTATAAGCAGCATCGTGTAGCTTAACACTCT-GACCCACAACTCATGTGAGCATAT
102665613 ACGGTTACATATTACAG
65 ACGGTTACATATTACAG
102665630 TCACAGCT
1 TCACAGCT
102665638 TGTGTGATCA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
80 2 0.02
81 82 0.98
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (81 bp):
TCACAGCTCGTATAAGCAGCATCGTGTAGCTTAACACTCTGACCCACAACTCATGTGAGCATATA
CGGTTACATATTACAG
Found at i:102692249 original size:81 final size:81
Alignment explanation
Indices: 102692112--102692281 Score: 270
Period size: 81 Copynumber: 2.1 Consensus size: 81
102692102 TGCGGATTTT
* * * *
102692112 TCACAGCTCGTGTGAGCAGCATTGTGTAGCTTAACATTCTGACCCACAACTTATGTGAGCATATA
1 TCACAGCTCGTATGAGCAGCATCGTGTAGCTTAACACTCTGACCCACAACTCATGTGAGCATATA
102692177 CGGTTACATGTTACAG
66 CGGTTACATGTTACAG
* *
102692193 TCACAGCTCGTATGAGCAGCATCGTGTAGCTTAACAC-CTCGGCCCATAACTCATGTGAGCATAT
1 TCACAGCTCGTATGAGCAGCATCGTGTAGCTTAACACTCT-GACCCACAACTCATGTGAGCATAT
102692257 ACGGTTACATGTTACAG
65 ACGGTTACATGTTACAG
102692274 TCACAGCT
1 TCACAGCT
102692282 TGTGTGATCA
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 2 0.02
81 80 0.98
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (81 bp):
TCACAGCTCGTATGAGCAGCATCGTGTAGCTTAACACTCTGACCCACAACTCATGTGAGCATATA
CGGTTACATGTTACAG
Found at i:102699151 original size:12 final size:11
Alignment explanation
Indices: 102699123--102699166 Score: 56
Period size: 10 Copynumber: 4.1 Consensus size: 11
102699113 TGCCTTAGAC
*
102699123 AAAAAA-AAAA
1 AAAAAAGAAAG
102699133 AAAAAAGAAAG
1 AAAAAAGAAAG
102699144 AAAGAAAGAAAG
1 AAA-AAAGAAAG
102699156 AAAAAA-AAAG
1 AAAAAAGAAAG
102699166 A
1 A
102699167 GTAAGGTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 11 0.35
11 9 0.29
12 11 0.35
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:102699381 original size:29 final size:29
Alignment explanation
Indices: 102699339--102699394 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
102699329 CTTGGTCTCT
* *
102699339 ATATTTTTATAATGTTATTAATTAGTTTA
1 ATATTTTTACAATGTAATTAATTAGTTTA
102699368 ATATTTTTACAATGTAATTAATTAGTT
1 ATATTTTTACAATGTAATTAATTAGTT
102699395 CAAATAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (29 bp):
ATATTTTTACAATGTAATTAATTAGTTTA
Found at i:102700370 original size:4 final size:4
Alignment explanation
Indices: 102700361--102700397 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
102700351 TCTAAATGAA
*
102700361 GAGG GAGG GAGG GAAG GAGG GAGG GAGG GAGG GAGG G
1 GAGG GAGG GAGG GAGG GAGG GAGG GAGG GAGG GAGG G
102700398 GGGGGATAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.73, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:102701504 original size:28 final size:28
Alignment explanation
Indices: 102701470--102701531 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
102701460 ATATACTTAT
**
102701470 ATATAAATAAAACCATACATTACATTAA
1 ATATAAATAAAACCATACACCACATTAA
* *
102701498 ATATAAATAAAAGCATACGCCACATTAA
1 ATATAAATAAAACCATACACCACATTAA
102701526 ATATAA
1 ATATAA
102701532 CCCTTATCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (28 bp):
ATATAAATAAAACCATACACCACATTAA
Found at i:102701933 original size:3 final size:3
Alignment explanation
Indices: 102701925--102701955 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
102701915 GAGAATAACC
102701925 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
102701956 TCTTCACGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:102706269 original size:10 final size:10
Alignment explanation
Indices: 102706246--102706278 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
102706236 TTTATCTACA
102706246 TTTTATAATT
1 TTTTATAATT
*
102706256 TTTAAT-ATT
1 TTTTATAATT
102706265 TTTTATAATT
1 TTTTATAATT
102706275 TTTT
1 TTTT
102706279 GAAGTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTATAATT
Found at i:102711140 original size:21 final size:21
Alignment explanation
Indices: 102711105--102711162 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
102711095 GCATCATCTA
*
102711105 AAAATTT-TAAGAAAATACAT
1 AAAATTTATAAAAAAATACAT
* *
102711125 AAAATTTATAATAAAAAAACTT
1 AAAATTTATAA-AAAAATACAT
102711147 AAAA-TTATAAAAAAAT
1 AAAATTTATAAAAAAAT
102711163 CGTAAATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.38
21 9 0.28
22 11 0.34
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATTTATAAAAAAATACAT
Found at i:102711173 original size:20 final size:18
Alignment explanation
Indices: 102711135--102711174 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
102711125 AAAATTTATA
*
102711135 ATAAAAAAACTTAAAATT
1 ATAAAAAAACGTAAAATT
102711153 ATAAAAAAATCGTAAATATT
1 ATAAAAAAA-CGTAAA-ATT
102711173 AT
1 AT
102711175 GCAGTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 5 0.26
20 5 0.26
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (18 bp):
ATAAAAAAACGTAAAATT
Found at i:102711336 original size:14 final size:14
Alignment explanation
Indices: 102711317--102711343 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102711307 ATAAAAAATA
102711317 AATATATATTTTTT
1 AATATATATTTTTT
102711331 AATATATATTTTT
1 AATATATATTTTT
102711344 AATTTTCAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AATATATATTTTTT
Found at i:102711337 original size:12 final size:13
Alignment explanation
Indices: 102711317--102711346 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
102711307 ATAAAAAATA
102711317 AATATATATTTTTT
1 AATATATA-TTTTT
102711331 AATATATATTTTT
1 AATATATATTTTT
102711344 AAT
1 AAT
102711347 TTTCAGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AATATATATTTTT
Found at i:102715489 original size:20 final size:20
Alignment explanation
Indices: 102715473--102715522 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
102715463 AAAGAATTAT
102715473 AAATTAAAAAGATGAATTGA
1 AAATTAAAAAGATGAATTGA
102715493 AAATTAAAAAGATGAATTGA
1 AAATTAAAAAGATGAATTGA
102715513 AAATTAAAAA
1 AAATTAAAAA
102715523 AAACTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (20 bp):
AAATTAAAAAGATGAATTGA
Found at i:102716407 original size:13 final size:13
Alignment explanation
Indices: 102716391--102716415 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102716381 CAAATACTCA
102716391 ACCCAACCCAATT
1 ACCCAACCCAATT
102716404 ACCCAACCCAAT
1 ACCCAACCCAAT
102716416 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:102716410 original size:18 final size:18
Alignment explanation
Indices: 102716379--102716414 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
102716369 TATATATTAG
*
102716379 CCCAAATACTCAACCCAA
1 CCCAAATACCCAACCCAA
*
102716397 CCCAATTACCCAACCCAA
1 CCCAAATACCCAACCCAA
102716415 TCATAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.47, G:0.00, T:0.11
Consensus pattern (18 bp):
CCCAAATACCCAACCCAA
Found at i:102716479 original size:5 final size:6
Alignment explanation
Indices: 102716440--102716486 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
102716430 ATAATTTAAC
*
102716440 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
102716487 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:102716487 original size:20 final size:20
Alignment explanation
Indices: 102716440--102716480 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102716430 ATAATTTAAC
**
102716440 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
*
102716460 AACTAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
102716480 A
1 A
102716481 TAAAAAACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:102716537 original size:8 final size:9
Alignment explanation
Indices: 102716506--102716545 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
102716496 TTTGTACAAA
*
102716506 TAATTTGGT
1 TAATTCGGT
102716515 TAATTCGGT
1 TAATTCGGT
102716524 TAATTCGG-
1 TAATTCGGT
102716532 TAATTCGGT
1 TAATTCGGT
102716541 TAATT
1 TAATT
102716546 TTATACTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 8 0.28
9 21 0.72
ACGTcount: A:0.25, C:0.07, G:0.20, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:102717610 original size:5 final size:5
Alignment explanation
Indices: 102717589--102717641 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
102717579 TGTTAAAATA
* *
102717589 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
102717637 TATAT
1 TATAT
102717642 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:102717620 original size:10 final size:9
Alignment explanation
Indices: 102717586--102717642 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
102717576 ATGTGTTAAA
102717586 ATATATATT
1 ATATATATT
*
102717595 AAAT-TATT
1 ATATATATT
102717603 AT-TATATT
1 ATATATATT
102717611 ATAGTATATT
1 ATA-TATATT
102717621 ATAT-TA-T
1 ATATATATT
102717628 ATATTATATT
1 ATA-TATATT
102717638 ATATA
1 ATATA
102717643 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:102717632 original size:12 final size:12
Alignment explanation
Indices: 102717587--102717642 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
102717577 TGTGTTAAAA
*
102717587 TATATATTAAAT
1 TATATATTATAT
102717599 TAT-TATTATATT
1 TATATATTATA-T
102717611 ATAGTATATTATAT
1 -TA-TATATTATAT
102717625 TATATATTATAT
1 TATATATTATAT
102717637 TATATA
1 TATATA
102717643 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:102718976 original size:18 final size:19
Alignment explanation
Indices: 102718953--102718991 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
102718943 ATATATAGAT
102718953 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
102718971 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
102718990 AT
1 AT
102718992 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:102719341 original size:39 final size:39
Alignment explanation
Indices: 102719231--102719365 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
102719221 GACCTCGAGT
* * * *
102719231 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
102719272 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
102719310 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
102719349 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
102719366 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:102720084 original size:5 final size:5
Alignment explanation
Indices: 102720074--102720099 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
102720064 TGAGCATTCG
102720074 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
102720100 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:102721138 original size:9 final size:9
Alignment explanation
Indices: 102721124--102721160 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
102721114 TATAGTTTGA
102721124 TATTCGAAT
1 TATTCGAAT
102721133 TATTCGAAT
1 TATTCGAAT
*
102721142 TATTCGAGT
1 TATTCGAAT
102721151 TATTCGAAT
1 TATTCGAAT
102721160 T
1 T
102721161 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:102721226 original size:9 final size:9
Alignment explanation
Indices: 102721212--102721244 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
102721202 ATTCGAGTTG
102721212 ACTCGAATA
1 ACTCGAATA
*
102721221 ACTCGATTA
1 ACTCGAATA
102721230 ACTCGAATA
1 ACTCGAATA
102721239 ACTCGA
1 ACTCGA
102721245 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:102721235 original size:18 final size:18
Alignment explanation
Indices: 102721212--102721246 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
102721202 ATTCGAGTTG
102721212 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
102721230 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
102721247 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:102725586 original size:18 final size:19
Alignment explanation
Indices: 102725565--102725605 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
102725555 AATGAAATGA
102725565 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
102725583 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
102725602 GAAA
1 GAAA
102725606 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:102727723 original size:54 final size:54
Alignment explanation
Indices: 102727623--102727727 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 54
102727613 CCTGGCAACA
* * *
102727623 CAAAAAAAGATAAATTTTTTAACTTTCTGACACCGATGTCGCCAGACAACATGG
1 CAAAAAAAGAAAAATTTTTCAACTTTCTGACACCAATGTCGCCAGACAACATGG
* *
102727677 CAAAAAAA-AAAAACTTTTTCAACTTTCTGACGCCAATG-CTGGCAGACAACA
1 CAAAAAAAGAAAAA-TTTTTCAACTTTCTGACACCAATGTC-GCCAGACAACA
102727728 CGGGCACCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
53 5 0.11
54 39 0.89
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (54 bp):
CAAAAAAAGAAAAATTTTTCAACTTTCTGACACCAATGTCGCCAGACAACATGG
Found at i:102729314 original size:22 final size:22
Alignment explanation
Indices: 102729286--102729328 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
102729276 AACTAGGGTT
102729286 TATTTTTTTTTA-CTCAATTATA
1 TATTTTTTTTTACCT-AATTATA
102729308 TATTTTTTTTTACCTAATTAT
1 TATTTTTTTTTACCTAATTAT
102729329 GAAACCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTTTTTTTTACCTAATTATA
Found at i:102729633 original size:6 final size:6
Alignment explanation
Indices: 102729622--102729652 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
102729612 CCGTCCCCTT
102729622 CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC C
1 CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC C
102729653 GAAATTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTCAC
Found at i:102735616 original size:44 final size:44
Alignment explanation
Indices: 102735553--102735640 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
102735543 AGGAATTAAG
*
102735553 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATATTGAAGTT
1 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
102735597 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
1 ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
102735641 TTTTTTTGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (44 bp):
ATAGGCTAGTCATAGATGAAGATTGTAATCATGATACTGAAGTT
Found at i:102738473 original size:55 final size:55
Alignment explanation
Indices: 102738408--102738519 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
102738398 TGTCAACTTT
102738408 TTCTTTCCTTGGGCAGCCAATGAAGGCGCTTCTGCATTCTGCAACATACCATAAA
1 TTCTTTCCTTGGGCAGCCAATGAAGGCGCTTCTGCATTCTGCAACATACCATAAA
102738463 TTCTTTCCTTGGGCAGCCAATGAAGGCGCTTCTGCATTCTGCAACATACCATAAA
1 TTCTTTCCTTGGGCAGCCAATGAAGGCGCTTCTGCATTCTGCAACATACCATAAA
102738518 TT
1 TT
102738520 GATCTCCCAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (55 bp):
TTCTTTCCTTGGGCAGCCAATGAAGGCGCTTCTGCATTCTGCAACATACCATAAA
Found at i:102742482 original size:86 final size:86
Alignment explanation
Indices: 102742337--102742508 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
102742327 AGATCAATTG
102742337 TTCAGGAAAGAAAGAACCTAAACCCTAAGCATGGCAAAGTCATTAAGACGAGAATTAACTCAAAA
1 TTCAGGAAAGAAAGAACCTAAACCCTAAGCATGGCAAAGTCATTAAGACGAGAATTAACTCAAAA
102742402 TTGGTATGAGCTATCCGTGAA
66 TTGGTATGAGCTATCCGTGAA
* *
102742423 TTCAGGAAAGAAAGAACCTAAACCCTAGGCCTGGCAAAGTCATTAAGACGAGAATTAACTCAAAA
1 TTCAGGAAAGAAAGAACCTAAACCCTAAGCATGGCAAAGTCATTAAGACGAGAATTAACTCAAAA
102742488 TTGGTATGAGCTATCCGTGAA
66 TTGGTATGAGCTATCCGTGAA
102742509 CCCCTTAGCC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (86 bp):
TTCAGGAAAGAAAGAACCTAAACCCTAAGCATGGCAAAGTCATTAAGACGAGAATTAACTCAAAA
TTGGTATGAGCTATCCGTGAA
Found at i:102747280 original size:65 final size:66
Alignment explanation
Indices: 102747149--102747282 Score: 261
Period size: 65 Copynumber: 2.0 Consensus size: 66
102747139 TCACACAATG
102747149 AGTGTTACTGGGTGCTTCTTTTACTTAAATTTTTTTTTCTATTTATTAATTAAATAATGTTTGCT
1 AGTGTTACTGGGTGCTTCTTTTACTTAAATTTTTTTTTCTATTTATTAATTAAATAATGTTTGCT
102747214 A
66 A
102747215 AGTGTTACTGGGTGCTTCTTTTACTTAAA-TTTTTTTTCTATTTATTAATTAAATAATGTTTGCT
1 AGTGTTACTGGGTGCTTCTTTTACTTAAATTTTTTTTTCTATTTATTAATTAAATAATGTTTGCT
102747279 A
66 A
102747280 AGT
1 AGT
102747283 ACATTTTAAC
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 39 0.57
66 29 0.43
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.54
Consensus pattern (66 bp):
AGTGTTACTGGGTGCTTCTTTTACTTAAATTTTTTTTTCTATTTATTAATTAAATAATGTTTGCT
A
Found at i:102751597 original size:23 final size:20
Alignment explanation
Indices: 102751550--102751601 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
102751540 AAAAATAAGT
102751550 TAAT-TAAAATATTTTTAAA
1 TAATATAAAATATTTTTAAA
102751569 TAAATATAAAATATTATCTTAATA
1 T-AATATAAAATATT-T-TTAA-A
102751593 TAATA-AAAA
1 TAATATAAAA
102751602 GACATTATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 9 0.32
22 5 0.18
23 8 0.29
24 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATATAAAATATTTTTAAA
Found at i:102751776 original size:18 final size:17
Alignment explanation
Indices: 102751736--102751779 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
102751726 ATTGTGAAAT
* *
102751736 AATTAAAAATAAATTTA
1 AATTAAAATTAAATTCA
*
102751753 ATTTAAAATTCAAATTCA
1 AATTAAAATT-AAATTCA
102751771 AATTAAAAT
1 AATTAAAAT
102751780 ATTTTAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (17 bp):
AATTAAAATTAAATTCA
Found at i:102752356 original size:17 final size:15
Alignment explanation
Indices: 102752334--102752369 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
102752324 TAATTAAATT
102752334 AAATTAAAATATTAATA
1 AAATTAAAA-ATTAA-A
102752351 AAATTAAAAATTAAA
1 AAATTAAAAATTAAA
102752366 AAAT
1 AAAT
102752370 ATTGAGCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 5 0.26
17 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATTAAAAATTAAA
Done.