Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 103066607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103066607
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 238 characters in sequence are not A, C, G, or T
File 345 of 345
Found at i:102752653 original size:17 final size:19
Alignment explanation
Indices: 102752607--102752649 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
102752597 ACTATTGATT
*
102752607 AAAAGAATAAATTTATTTAA
1 AAAAGTATAAATTTATTT-A
102752627 AAAATGTATAAATTTATTTA
1 AAAA-GTATAAATTTATTTA
102752647 AAA
1 AAA
102752650 TATATCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AAAAGTATAAATTTATTTA
Found at i:102754194 original size:21 final size:23
Alignment explanation
Indices: 102754155--102754199 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
102754145 TCTTGTTAAG
102754155 ATAACTAATAGGTCGTTAGTAGC
1 ATAACTAATAGGTCGTTAGTAGC
*
102754178 ATAA-TAAT-GGTTGTTAGTAGC
1 ATAACTAATAGGTCGTTAGTAGC
102754199 A
1 A
102754200 GTTAGTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.62
22 4 0.19
23 4 0.19
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (23 bp):
ATAACTAATAGGTCGTTAGTAGC
Found at i:102756099 original size:7 final size:7
Alignment explanation
Indices: 102756087--102756111 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
102756077 GTAAAACTTT
102756087 TTTTTTA
1 TTTTTTA
102756094 TTTTTTA
1 TTTTTTA
102756101 TTTTTTA
1 TTTTTTA
102756108 TTTT
1 TTTT
102756112 ACAAGCAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:102760166 original size:14 final size:14
Alignment explanation
Indices: 102760144--102760174 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
102760134 AGAGTTGGAG
*
102760144 TTGGGGATCTTTGT
1 TTGGAGATCTTTGT
102760158 TTGGAGATCTTTGT
1 TTGGAGATCTTTGT
102760172 TTG
1 TTG
102760175 ATGTTAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52
Consensus pattern (14 bp):
TTGGAGATCTTTGT
Found at i:102769121 original size:3 final size:3
Alignment explanation
Indices: 102769110--102769139 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
102769100 GCGGCTGCTG
*
102769110 TCC TTC TCC TCC TCC TCC TCC TCC TCC TCC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
102769140 GCCCGCTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
TCC
Found at i:102770082 original size:13 final size:15
Alignment explanation
Indices: 102770054--102770085 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
102770044 CAAAATAGTG
102770054 AAAAATAACAAGAAA
1 AAAAATAACAAGAAA
102770069 AAAAATAACAA-AAA
1 AAAAATAACAAGAAA
102770083 AAA
1 AAA
102770086 GTAACCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.84, C:0.06, G:0.03, T:0.06
Consensus pattern (15 bp):
AAAAATAACAAGAAA
Found at i:102774171 original size:84 final size:84
Alignment explanation
Indices: 102774030--102774199 Score: 322
Period size: 84 Copynumber: 2.0 Consensus size: 84
102774020 ATGCACACCC
*
102774030 CTGTTTAACTGAGATCTCTCCCAAGATATGTCAAGTCAATCTAGGGGAGAGCAGGGCAGGATTTA
1 CTGTTTAACTGAGATCTCTCCCAAGATATGTCAAGTCAATCTAGAGGAGAGCAGGGCAGGATTTA
102774095 ATTAGGGAATGAGAGTAAA
66 ATTAGGGAATGAGAGTAAA
102774114 CTGTTTAACTGAGATCTCTCCCAAGATATGTCAAGTCAATCTAGAGGAGAGCAGGGCAGGATTTA
1 CTGTTTAACTGAGATCTCTCCCAAGATATGTCAAGTCAATCTAGAGGAGAGCAGGGCAGGATTTA
*
102774179 ATTAGGGAATGAGAGTGAA
66 ATTAGGGAATGAGAGTAAA
102774198 CT
1 CT
102774200 ACCTCCCTCA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (84 bp):
CTGTTTAACTGAGATCTCTCCCAAGATATGTCAAGTCAATCTAGAGGAGAGCAGGGCAGGATTTA
ATTAGGGAATGAGAGTAAA
Found at i:102786844 original size:18 final size:19
Alignment explanation
Indices: 102786817--102786854 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
102786807 TTTTAAAAAA
*
102786817 TAAAAAAATATAATT-TAT
1 TAAAAAAATAAAATTATAT
*
102786835 TAAAATAATAAAATTATAT
1 TAAAAAAATAAAATTATAT
102786854 T
1 T
102786855 TTTTTATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAAAAATAAAATTATAT
Found at i:102786847 original size:23 final size:22
Alignment explanation
Indices: 102786813--102786879 Score: 62
Period size: 24 Copynumber: 2.9 Consensus size: 22
102786803 AATCTTTTAA
102786813 AAAATAAAAAAATATAATTTATT
1 AAAAT-AAAAAATATAATTTATT
* *
102786836 AAAATAATAAAATTATATTTTTTT
1 AAAATAA-AAAA-TATAATTTATT
* * *
102786860 ATAGTAAAAATTATAATTTA
1 AAAATAAAAAATATAATTTA
102786880 ATTTTGATCC
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
22 9 0.26
23 12 0.34
24 14 0.40
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (22 bp):
AAAATAAAAAATATAATTTATT
Found at i:102789968 original size:25 final size:26
Alignment explanation
Indices: 102789938--102790053 Score: 91
Period size: 26 Copynumber: 4.5 Consensus size: 26
102789928 CAGATAACAT
102789938 GCCACAAAGGCTTTCCACA-ATATTA
1 GCCACAAAGGCTTTCCACAGATATTA
* * * *
102789963 GTCACATAGGTTTTTCCAGAGA-ATTCA
1 GCCACAAAGG-CTTTCCACAGATATT-A
* *
102789990 -CCACAAAGGTTTTTCCACA-AGATTA
1 GCCACAAAGG-CTTTCCACAGATATTA
*
102790015 GCCACAAAGGC-TTCC-CAGATATCA
1 GCCACAAAGGCTTTCCACAGATATTA
102790039 CGCCACAAAGGCTTT
1 -GCCACAAAGGCTTT
102790054 TCTAGAGAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
23 2 0.03
24 8 0.11
25 21 0.29
26 40 0.55
27 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCCACAAAGGCTTTCCACAGATATTA
Found at i:102790055 original size:51 final size:51
Alignment explanation
Indices: 102789927--102790055 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 51
102789917 TATAGATTTT
* * * * * *
102789927 CCAGATAACATGCCACAAAGGC-TTTCCACAATATTAGTCACATAGGTTTTT
1 CCAGATATCA-GCCACAAAGGCTTTTCCACAAGATTAGCCACAAAGGTCTTC
* *
102789978 CCAGAGAATTCA-CCACAAAGGTTTTTCCACAAGATTAGCCACAAAGG-CTTC
1 CCAGA-TA-TCAGCCACAAAGGCTTTTCCACAAGATTAGCCACAAAGGTCTTC
102790029 CCAGATATCACGCCACAAAGGCTTTTC
1 CCAGATATCA-GCCACAAAGGCTTTTC
102790056 TAGAGAATTC
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
49 3 0.05
50 1 0.02
51 35 0.56
52 22 0.35
53 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (51 bp):
CCAGATATCAGCCACAAAGGCTTTTCCACAAGATTAGCCACAAAGGTCTTC
Found at i:102791723 original size:21 final size:19
Alignment explanation
Indices: 102791694--102791746 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
102791684 ATAAAACATG
*
102791694 AAAATGTTTAAAAGTTTTATT
1 AAAAAGTTTAAAAG-TTTA-T
*
102791715 AAAAAGTTTTAAAGTTTAT
1 AAAAAGTTTAAAAGTTTAT
102791734 ACAAAA-TTTAAAA
1 A-AAAAGTTTAAAA
102791747 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 8 0.29
20 8 0.29
21 12 0.43
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (19 bp):
AAAAAGTTTAAAAGTTTAT
Found at i:102791869 original size:21 final size:21
Alignment explanation
Indices: 102791821--102791870 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
102791811 TTAATTTTTT
* * *
102791821 AAAATTTT-TATATACTTTTT
1 AAAATTTTATAAATACTATTA
*
102791841 AAATTTTTATAAATACTATTA
1 AAAATTTTATAAATACTATTA
102791862 AAAATTTTA
1 AAAATTTTA
102791871 AAAGTAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
AAAATTTTATAAATACTATTA
Found at i:102792118 original size:2 final size:2
Alignment explanation
Indices: 102792113--102792144 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
102792103 TTTTTTACAA
102792113 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102792145 TTAGAGCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102792544 original size:59 final size:59
Alignment explanation
Indices: 102792480--102792599 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
102792470 TGTTCTTCCT
102792480 CAAAATTAAAGTATATAATATATTTCAAAATTTTATACATACGATCAATTCATGCATCA
1 CAAAATTAAAGTATATAATATATTTCAAAATTTTATACATACGATCAATTCATGCATCA
102792539 CAAAATTAAAGTATATAATATATTTCAAAATTTTATACATACGATCAATTCATGCATCA
1 CAAAATTAAAGTATATAATATATTTCAAAATTTTATACATACGATCAATTCATGCATCA
102792598 CA
1 CA
102792600 CGAGATAAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (59 bp):
CAAAATTAAAGTATATAATATATTTCAAAATTTTATACATACGATCAATTCATGCATCA
Found at i:102794015 original size:52 final size:52
Alignment explanation
Indices: 102793941--102794043 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
102793931 AAACATTGAC
*
102793941 ATAGAAGCGAAAATAGACAAAGTTGGGATATTTTTAATGCATAGAAAACAAT
1 ATAGAAGCGAAAATAGAAAAAGTTGGGATATTTTTAATGCATAGAAAACAAT
102793993 ATAGAAGCGAAAATAGAAAAAGTTGGGATATTTTTAATGCATAGAAAACAA
1 ATAGAAGCGAAAATAGAAAAAGTTGGGATATTTTTAATGCATAGAAAACAA
102794044 CTAACCAGCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.50, C:0.07, G:0.19, T:0.24
Consensus pattern (52 bp):
ATAGAAGCGAAAATAGAAAAAGTTGGGATATTTTTAATGCATAGAAAACAAT
Found at i:102803762 original size:12 final size:11
Alignment explanation
Indices: 102803743--102803775 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
102803733 TTTACCCAAG
102803743 AATTTTTTTCA
1 AATTTTTTTCA
102803754 AATTTTTTTCA
1 AATTTTTTTCA
102803765 AATTTTTTTCA
1 AATTTTTTTCA
102803776 GTAGGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (11 bp):
AATTTTTTTCA
Found at i:102804157 original size:14 final size:14
Alignment explanation
Indices: 102804135--102804164 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
102804125 TATTTAGTAT
*
102804135 GTATGATCATTTTA
1 GTATAATCATTTTA
102804149 GTATAATCATTTTA
1 GTATAATCATTTTA
102804163 GT
1 GT
102804165 TTAGTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (14 bp):
GTATAATCATTTTA
Found at i:102806387 original size:51 final size:50
Alignment explanation
Indices: 102806316--102806475 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
102806306 CTGATCACAT
102806316 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
102806367 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
102806417 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
102806468 TTGTCACT
1 TTATCACT
102806476 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:102806698 original size:25 final size:25
Alignment explanation
Indices: 102806664--102806715 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
102806654 TTTGTAAAAT
102806664 TCTAATCAGCTACTTTTTCTTTTCC
1 TCTAATCAGCTACTTTTTCTTTTCC
102806689 TCTAATCAGCTACTTTTTCTTTTCC
1 TCTAATCAGCTACTTTTTCTTTTCC
102806714 TC
1 TC
102806716 GACTTGCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.04, T:0.52
Consensus pattern (25 bp):
TCTAATCAGCTACTTTTTCTTTTCC
Found at i:102818203 original size:3 final size:3
Alignment explanation
Indices: 102818195--102818229 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
102818185 TTTTATAAAA
102818195 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
102818230 AGATACAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:102821895 original size:48 final size:48
Alignment explanation
Indices: 102821814--102821915 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
102821804 ATAAATTATG
* *
102821814 TTATGCATTTTTAAACTTGGTCTTCCACTGTCTACACTCTCATCACTAT
1 TTAT-CATTGTTAAACTTGGTCTTCCACTGTCTACACTATCATCACTAT
* * * *
102821863 TTATCATTGTTAAATTTGGTTTTCCACTGTCTATACTATTATCACTAT
1 TTATCATTGTTAAACTTGGTCTTCCACTGTCTACACTATCATCACTAT
102821911 TTATC
1 TTATC
102821916 CCCTCTTGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 43 0.91
49 4 0.09
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.47
Consensus pattern (48 bp):
TTATCATTGTTAAACTTGGTCTTCCACTGTCTACACTATCATCACTAT
Found at i:102829883 original size:75 final size:75
Alignment explanation
Indices: 102829764--102829935 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
102829754 CATGGCAAAG
** *
102829764 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
102829823 CCATACTGAGC
65 CCATACCGAGC
102829834 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
102829899 CATACCGAGT
66 CATACCGAGC
***
102829909 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
102829936 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:102829902 original size:35 final size:35
Alignment explanation
Indices: 102829767--102829933 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
102829757 GGCAAAGTGT
* **
102829767 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
102829802 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
102829837 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
102829877 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
102829913 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
102829934 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:102829925 original size:36 final size:35
Alignment explanation
Indices: 102829863--102829933 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
102829853 ATTATCAAAT
* *
102829863 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
102829898 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
102829934 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:102837345 original size:33 final size:33
Alignment explanation
Indices: 102837308--102837376 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
102837298 GAGTTGTACA
*
102837308 TTTCCTTTTCAAATGGTAAATACAAAGTATACC
1 TTTCCTTTTCAAATGGTAAACACAAAGTATACC
* *
102837341 TTTCCTTTTCAAATGGTACACACAGAGTATACC
1 TTTCCTTTTCAAATGGTAAACACAAAGTATACC
102837374 TTT
1 TTT
102837377 TTAAGTGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (33 bp):
TTTCCTTTTCAAATGGTAAACACAAAGTATACC
Found at i:102837479 original size:29 final size:29
Alignment explanation
Indices: 102837437--102837505 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
102837427 GTATCTCTTT
102837437 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
*
102837466 CCTTTTCACATTCGATAGTCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
102837495 CCTTTTCACAT
1 CCTTTTCACAT
102837506 GGTACACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:102843137 original size:8 final size:8
Alignment explanation
Indices: 102843126--102843150 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
102843116 TATTAAATTA
102843126 TTAAATGT
1 TTAAATGT
102843134 TTAAATGT
1 TTAAATGT
102843142 TTAAATGT
1 TTAAATGT
102843150 T
1 T
102843151 GCCGATTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (8 bp):
TTAAATGT
Found at i:102843491 original size:134 final size:133
Alignment explanation
Indices: 102843244--102843680 Score: 360
Period size: 134 Copynumber: 3.3 Consensus size: 133
102843234 CATAAATAAA
* * ** ** * *
102843244 CTAACTCAGATGAAATCGTTCATGATCGTAAATCAATGAACTTAGGCTGTGACCATAAATCAACA
1 CTAACTCATATGAAAT-GTTCATGATCATAAATCAATGAACTTAGAATGTGATAAAAAATCAACG
* ** * * * ** * * * *
102843309 AGCCTTAATAATATCAGTTGTGA-TAGTAAGTTGGCGAGCTATTAGAATAGAGTTGCAATCGTAA
65 AGCCTCAATAATATCAACTGTAACCA-TAAATCCGCAAGCTGTTTGAATAGAGTTGCGATCGTAA
102843373 ATCTG
129 ATCTG
* *** *
102843378 CTAACTCATATGAAACTGTTAATGATCATAAATCAATGAACTTAGAATGTGATTGTAAATTAACG
1 CTAACTCATATGAAA-TGTTCATGATCATAAATCAATGAACTTAGAATGTGATAAAAAATCAACG
* * * *
102843443 AGCCTCAATAATATCAGCTGTAATCATAAA-CCAGCAAGTTGTTTGAATAGAGTTGCGATCATAA
65 AGCCTCAATAATATCAACTGTAACCATAAATCC-GCAAGCTGTTTGAATAGAGTTGCGATCGTAA
*
102843507 ATCAG
129 ATCTG
* * * * ** *
102843512 CTAACTC-TGAAGAAAATTTTCATGATCGTAAATTAATGAACTTAGGGTGTGATAAAAAATCAGC
1 CTAACTCAT-ATG-AAATGTTCATGATCATAAATCAATGAACTTAGAATGTGATAAAAAATCAAC
** * * * * *
102843576 GAGCCTTGATAATATCAATTGTGACCATAAATCCGCGAGCTGTTTGAATGGCGTTGCGATCGTAA
64 GAGCCTCAATAATATCAACTGTAACCATAAATCCGCAAGCTGTTTGAATAGAGTTGCGATCGTAA
102843641 AT-TAG
129 ATCT-G
* *
102843646 CTAAATCAGATGAAATCGTTCATGATCATAAATCA
1 CTAACTCATATGAAAT-GTTCATGATCATAAATCA
102843681 GTAAACCTTA
Statistics
Matches: 240, Mismatches: 54, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
133 5 0.02
134 228 0.95
135 7 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (133 bp):
CTAACTCATATGAAATGTTCATGATCATAAATCAATGAACTTAGAATGTGATAAAAAATCAACGA
GCCTCAATAATATCAACTGTAACCATAAATCCGCAAGCTGTTTGAATAGAGTTGCGATCGTAAAT
CTG
Found at i:102844657 original size:21 final size:21
Alignment explanation
Indices: 102844631--102844670 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
102844621 ATACCTGCTA
*
102844631 AAAGGTATCGAGACTTTTTGG
1 AAAGGTATCAAGACTTTTTGG
*
102844652 AAAGGTATCAATACTTTTT
1 AAAGGTATCAAGACTTTTT
102844671 ATGTTGATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (21 bp):
AAAGGTATCAAGACTTTTTGG
Found at i:102845196 original size:134 final size:133
Alignment explanation
Indices: 102844956--102845277 Score: 457
Period size: 134 Copynumber: 2.4 Consensus size: 133
102844946 AGTTTAACAG
** * *
102844956 AAGAAATCGTTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAGTGAGCCTTAAT
1 AAGAAATTATTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAATAAGCCTTAAT
* *
102845021 AATATCAAATGTGATTGTAAATCAGTAAGCAATTAGAATGGAGTTGCAATCGTAAATCAGCTAAC
66 AATATCAAATGTGATCGTAAATCAGTAAGCAATTAAAATGGAGTTGCAATCGTAAATCAGCTAAC
102845086 TCAA
131 T-AA
* * *
102845090 AAGAAATTATTCGTGATCGTAAATCAATGAACTTAGGCTATGATCATAAATCAATAAGCCTTAAT
1 AAGAAATTATTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAATAAGCCTTAAT
* *** *
102845155 AATATC-AATCGTGATCGTAAATCAGTGAGTTGTTAAAATGGAGTTGCGATCGTAAATCAGCTAA
66 AATATCAAAT-GTGATCGTAAATCAGTAAGCAATTAAAATGGAGTTGCAATCGTAAATCAGCTAA
*
102845219 CTTA
130 CTAA
* * *
102845223 AAGAAATTATTCATGATCATAAATCAATAAACTTAGGTTGTGATCGTAAATCAAT
1 AAGAAATTATTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAAT
102845278 GAGCTGTTAG
Statistics
Matches: 166, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
133 53 0.32
134 113 0.68
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (133 bp):
AAGAAATTATTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAATAAGCCTTAAT
AATATCAAATGTGATCGTAAATCAGTAAGCAATTAAAATGGAGTTGCAATCGTAAATCAGCTAAC
TAA
Found at i:102847622 original size:46 final size:46
Alignment explanation
Indices: 102847557--102847830 Score: 336
Period size: 46 Copynumber: 6.0 Consensus size: 46
102847547 TTATCTTTGA
* * * *
102847557 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
102847603 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * **
102847649 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
102847695 CATGTTGCTATGGTATCTTTCAACCATGGTCTTACACGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
102847741 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
102847787 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCAT
102847831 ATCAGAGAGC
Statistics
Matches: 200, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 4 0.02
46 196 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:102847719 original size:92 final size:92
Alignment explanation
Indices: 102847562--102847834 Score: 384
Period size: 92 Copynumber: 3.0 Consensus size: 92
102847552 TTTGACATGA
* * * *
102847562 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
** *
102847627 CATGGTCTTATTCATTTCATGTCACGC
66 CATGGTCTTACACATTTCATATCACGC
* * * *
102847654 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTGCTATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
102847719 CATGGTCTTACACGTTTCATATCAGGC
66 CATGGTCTTACACATTTCATATCACGC
* * * *
102847746 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*
102847811 CATGGTCTTACATATTTCATATCA
66 CATGGTCTTACACATTTCATATCA
102847835 GAGAGCACAC
Statistics
Matches: 158, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 158 1.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGC
Found at i:102847820 original size:138 final size:138
Alignment explanation
Indices: 102847572--102847820 Score: 383
Period size: 138 Copynumber: 1.8 Consensus size: 138
102847562 TGCCATAGTG
* * * * * *
102847572 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACAGTTTCTATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTA
** *
102847637 TTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
66 CACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
102847702 CTATGGTA
131 CTATGGTA
102847710 TCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACAGTTTC-TATCAGGCTGCCATGGTATCTTTCAACCATGGTCTT
* *
102847774 ACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
65 ACACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTA
102847821 CATATTTCAT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
137 4 0.04
138 95 0.96
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (138 bp):
TCTTTCAACCATGGTCTTACACAGTTTCTATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGTTG
CTATGGTA
Found at i:102849938 original size:18 final size:20
Alignment explanation
Indices: 102849923--102849959 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
102849913 TAATAATAAA
*
102849923 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
102849943 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
102849960 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:102865626 original size:58 final size:60
Alignment explanation
Indices: 102865536--102865657 Score: 230
Period size: 58 Copynumber: 2.1 Consensus size: 60
102865526 ACGTTTGTAA
102865536 TGGAAAAGTGACATGACACCCTACTATGTAAACGGTTCCAATTTAAGT-CTTCGCTGGG-
1 TGGAAAAGTGACATGACACCCTACTATGTAAACGGTTCCAATTTAAGTCCTTCGCTGGGC
102865594 TGGAAAAGTGACATGACACCCTACTATGTAAACGGTTCCAATTTAAGTCCTTCGCTGGGC
1 TGGAAAAGTGACATGACACCCTACTATGTAAACGGTTCCAATTTAAGTCCTTCGCTGGGC
102865654 TGGA
1 TGGA
102865658 CAGTAAAAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 48 0.77
59 10 0.16
60 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (60 bp):
TGGAAAAGTGACATGACACCCTACTATGTAAACGGTTCCAATTTAAGTCCTTCGCTGGGC
Found at i:102866356 original size:165 final size:167
Alignment explanation
Indices: 102866077--102866414 Score: 572
Period size: 165 Copynumber: 2.0 Consensus size: 167
102866067 TCACAAGCAG
102866077 TTAGGTTGCAATATGTGTTTCTAGTTTTGGCGACATAAGATTGAAAGTTGTGATTTGGCGACACA
1 TTAGGTTGCAATATGTGTTTCTAGTTTTGGCGACATAAGATTGAAA-----GATTTGGCGACACA
*
102866142 ACAATAGTAGACACGAGGGCATAGATTGGAAGTTGTGGTTTTGAATTTTGGCATGACAGAATCTG
61 ACAATAGCAGACACGAGGGCATAGATTGGAAGTTGTGGTTTTGAATTTTGGCATGACAGAATCTG
* *
102866207 GATGGGGAGAGATTGGAAGATAGAGGAGACAAAAGAGATTGA
126 GATGGGAAGAGATTAGAAGATAGAGGAGACAAAAGAGATTGA
*
102866249 TTAGGTTGCAATATGTGTTTTTAGTTTTGGCGACATAAGATTG-AA-ATTTGGCGACACAACAAT
1 TTAGGTTGCAATATGTGTTTCTAGTTTTGGCGACATAAGATTGAAAGATTTGGCGACACAACAAT
*
102866312 GGCAGACACGAGGGCATAGATTGGAAGTTGTGGTTTTGAATTTTGGCATGACAGAATCTGGATGG
66 AGCAGACACGAGGGCATAGATTGGAAGTTGTGGTTTTGAATTTTGGCATGACAGAATCTGGATGG
102866377 GAAGAGATTAGAAGATAGAGGAGACAAAAGAGATTGA
131 GAAGAGATTAGAAGATAGAGGAGACAAAAGAGATTGA
102866414 T
1 T
102866415 GGTAGAGTAA
Statistics
Matches: 161, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
165 117 0.73
171 2 0.01
172 42 0.26
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (167 bp):
TTAGGTTGCAATATGTGTTTCTAGTTTTGGCGACATAAGATTGAAAGATTTGGCGACACAACAAT
AGCAGACACGAGGGCATAGATTGGAAGTTGTGGTTTTGAATTTTGGCATGACAGAATCTGGATGG
GAAGAGATTAGAAGATAGAGGAGACAAAAGAGATTGA
Found at i:102867050 original size:18 final size:19
Alignment explanation
Indices: 102867027--102867063 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
102867017 CCCAGTATCT
102867027 ATACTACTA-TATATAAAA
1 ATACTACTATTATATAAAA
102867045 ATACTACTATTATATAAAA
1 ATACTACTATTATATAAAA
102867064 GGAAGGCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (19 bp):
ATACTACTATTATATAAAA
Found at i:102868032 original size:18 final size:19
Alignment explanation
Indices: 102868004--102868041 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
102867994 TTTTGTTATT
102868004 TCTGTTTACTTCTGTTCTG
1 TCTGTTTACTTCTGTTCTG
102868023 TCTG-TTACTTCTGTTCTG
1 TCTGTTTACTTCTGTTCTG
102868041 T
1 T
102868042 TTTCATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.05, C:0.21, G:0.16, T:0.58
Consensus pattern (19 bp):
TCTGTTTACTTCTGTTCTG
Found at i:102882980 original size:26 final size:26
Alignment explanation
Indices: 102882950--102883015 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
102882940 TTCGACCTAC
*
102882950 AGCTCGTGTGAGCAGGCCCATTTCACT
1 AGCTCGTGTGAGCAGACCCATTTCA-T
*
102882977 -GCTCGTATGAGCAGACCCATTTCAT
1 AGCTCGTGTGAGCAGACCCATTTCAT
102883002 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
102883016 CCATTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.03
26 34 0.97
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (26 bp):
AGCTCGTGTGAGCAGACCCATTTCAT
Found at i:102884100 original size:12 final size:13
Alignment explanation
Indices: 102884069--102884101 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
102884059 TAAGTCAGTG
102884069 AGCGACACGGCCT
1 AGCGACACGGCCT
102884082 AGC-ACACGGCCT
1 AGCGACACGGCCT
102884094 -GCGACACG
1 AGCGACACG
102884102 ACCATGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.74
13 3 0.16
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (13 bp):
AGCGACACGGCCT
Found at i:102886511 original size:14 final size:14
Alignment explanation
Indices: 102886492--102886534 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
102886482 ATATAACTGA
102886492 TAAATATTTTATAT
1 TAAATATTTTATAT
*
102886506 TAAATA-TTTATTAA
1 TAAATATTTTA-TAT
102886520 TAAATATTTTATAT
1 TAAATATTTTATAT
102886534 T
1 T
102886535 TAAGAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TAAATATTTTATAT
Found at i:102887414 original size:15 final size:15
Alignment explanation
Indices: 102887394--102887428 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
102887384 TTCTGATTAA
*
102887394 TTATTATATTATAAT
1 TTATTAAATTATAAT
102887409 TTATTAAATTATAAT
1 TTATTAAATTATAAT
*
102887424 ATATT
1 TTATT
102887429 TAGGATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTAAATTATAAT
Found at i:102889526 original size:46 final size:46
Alignment explanation
Indices: 102889347--102889528 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
102889337 TTTGACATGA
* * * * * *
102889347 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
102889393 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
102889439 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102889485 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102889529 AGAGCACACT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 118 0.97
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:102891679 original size:11 final size:11
Alignment explanation
Indices: 102891663--102891714 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
102891653 TATACTAAAT
102891663 AAATAATAATA
1 AAATAATAATA
*
102891674 AAATAAT-ATT
1 AAATAATAATA
* *
102891684 AAATATCTCATA
1 AAATA-ATAATA
*
102891696 AAATATTAATA
1 AAATAATAATA
102891707 AAATAATA
1 AAATAATA
102891715 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:102902180 original size:2 final size:2
Alignment explanation
Indices: 102902173--102902197 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
102902163 AACTAGCATG
102902173 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
102902198 TTTCTAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102904724 original size:51 final size:51
Alignment explanation
Indices: 102904647--102904748 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
102904637 TGTATATGGT
102904647 GGTCCACTGGACTTGAGCTATAGCTGCTATATATTGGGAGGTGATTCTGTC
1 GGTCCACTGGACTTGAGCTATAGCTGCTATATATTGGGAGGTGATTCTGTC
*
102904698 GGTCCACTGGACTTGAGCTATTGCTGCTATATATTGGGAGGTGATTCTGTC
1 GGTCCACTGGACTTGAGCTATAGCTGCTATATATTGGGAGGTGATTCTGTC
102904749 CTATCTCCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (51 bp):
GGTCCACTGGACTTGAGCTATAGCTGCTATATATTGGGAGGTGATTCTGTC
Found at i:102911464 original size:20 final size:20
Alignment explanation
Indices: 102911439--102911480 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
102911429 TAGCCAAGAA
*
102911439 TTTGCAAAATATTGGAAAAG
1 TTTGCAAAATATTAGAAAAG
102911459 TTTGCAAAATATTAGAAAAG
1 TTTGCAAAATATTAGAAAAG
102911479 TT
1 TT
102911481 GGCAGCAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (20 bp):
TTTGCAAAATATTAGAAAAG
Found at i:102913633 original size:21 final size:21
Alignment explanation
Indices: 102913607--102913649 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
102913597 TTTTGGTTCA
*
102913607 AATTACTTTCTGTGAGGATTT
1 AATTACTTTCTCTGAGGATTT
102913628 AATTACTTTCTCTGAGGATTT
1 AATTACTTTCTCTGAGGATTT
102913649 A
1 A
102913650 GATAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (21 bp):
AATTACTTTCTCTGAGGATTT
Found at i:102914609 original size:24 final size:24
Alignment explanation
Indices: 102914582--102914634 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
102914572 GCATTTGTAT
102914582 GTCATCATACATGTGTCTCTCATA
1 GTCATCATACATGTGTCTCTCATA
102914606 GTCATCATACATGTGTCTCTCATA
1 GTCATCATACATGTGTCTCTCATA
*
102914630 CTCAT
1 GTCAT
102914635 TTTACCTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (24 bp):
GTCATCATACATGTGTCTCTCATA
Found at i:102916899 original size:30 final size:30
Alignment explanation
Indices: 102916865--102916925 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
102916855 TCCTTAACTC
102916865 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
102916895 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
102916925 A
1 A
102916926 GTCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:102922817 original size:39 final size:39
Alignment explanation
Indices: 102922758--102922936 Score: 286
Period size: 39 Copynumber: 4.6 Consensus size: 39
102922748 ATCGTGATCT
* * * *
102922758 GAAGCCCAAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
102922797 AAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
102922836 GAAGCCCGAAGGCTAAGTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
102922875 GAAGCCCGAAGGCTAACTGAAGCACACAAGTACTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
102922914 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
102922937 TCATCAGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.39, C:0.24, G:0.25, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:102925668 original size:9 final size:9
Alignment explanation
Indices: 102925646--102925701 Score: 85
Period size: 9 Copynumber: 6.0 Consensus size: 9
102925636 ATTGTGTGTT
102925646 TGAATAGAAA
1 TGAATAG-AA
102925656 TGAATAGAA
1 TGAATAGAA
102925665 TGAATAGAAA
1 TGAATAG-AA
*
102925675 TGGATAGAA
1 TGAATAGAA
102925684 TGAATAGAA
1 TGAATAGAA
102925693 TGAATAGAA
1 TGAATAGAA
102925702 AAAAAAGAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
9 28 0.65
10 15 0.35
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.21
Consensus pattern (9 bp):
TGAATAGAA
Found at i:102925670 original size:19 final size:19
Alignment explanation
Indices: 102925646--102925701 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
102925636 ATTGTGTGTT
102925646 TGAATAGAAATGAATAGAA
1 TGAATAGAAATGAATAGAA
*
102925665 TGAATAGAAATGGATAGAA
1 TGAATAGAAATGAATAGAA
102925684 TGAATAG-AATGAATAGAA
1 TGAATAGAAATGAATAGAA
102925702 AAAAAAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
18 10 0.29
19 25 0.71
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.21
Consensus pattern (19 bp):
TGAATAGAAATGAATAGAA
Found at i:102926613 original size:30 final size:30
Alignment explanation
Indices: 102926578--102926637 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
102926568 TATTTTATTA
102926578 TTAATTTTCTTATTATTTTA-AAGGCATTTG
1 TTAATTTTCTTATTATTTTAGAA-GCATTTG
*
102926608 TTAATTTTTTTATTATTTTAGAAGCATTTG
1 TTAATTTTCTTATTATTTTAGAAGCATTTG
102926638 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTCTTATTATTTTAGAAGCATTTG
Found at i:102929066 original size:22 final size:22
Alignment explanation
Indices: 102929049--102929120 Score: 117
Period size: 22 Copynumber: 3.3 Consensus size: 22
102929039 CCCACACACT
102929049 CGTGTGCAACCCCTCACAGGCC
1 CGTGTGCAACCCCTCACAGGCC
*
102929071 CGTGTGCAACCCCTCATAGGCC
1 CGTGTGCAACCCCTCACAGGCC
* *
102929093 CGTGTGCAACCCCTAATAGGCC
1 CGTGTGCAACCCCTCACAGGCC
102929115 CGTGTG
1 CGTGTG
102929121 GACAGGTACA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.18, C:0.39, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTGTGCAACCCCTCACAGGCC
Found at i:102931078 original size:94 final size:94
Alignment explanation
Indices: 102930909--102931121 Score: 356
Period size: 94 Copynumber: 2.3 Consensus size: 94
102930899 TATGTGACAT
* *
102930909 ATGG-CTTAAGCACACGGGCGTATGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATGGA
1 ATGGCCTT-AGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGA
102930973 CAGAGAGCTCTATGGGCACGGGACACAGGC
65 CAGAGAGCTCTATGGGCACGGGACACAGGC
*
102931003 GTGGCCTTAGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGAC
1 ATGGCCTTAGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGAC
* *
102931068 AGAGAGCTCTATGGGTACGGGACACGGGC
66 AGAGAGCTCTATGGGCACGGGACACAGGC
*
102931097 ATGTCCTTAGCACACGGGCGTGTGC
1 ATGGCCTTAGCACACGGGCGTGTGC
102931122 TAAGCTTCCA
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
94 108 0.97
95 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.21
Consensus pattern (94 bp):
ATGGCCTTAGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGAC
AGAGAGCTCTATGGGCACGGGACACAGGC
Found at i:102932951 original size:30 final size:30
Alignment explanation
Indices: 102932917--102932977 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
102932907 TCCTTAACTC
102932917 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
102932947 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
102932977 A
1 A
102932978 GTCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:102938912 original size:39 final size:39
Alignment explanation
Indices: 102938853--102939031 Score: 286
Period size: 39 Copynumber: 4.6 Consensus size: 39
102938843 ATCGTGATCT
* * * *
102938853 GAAGCCCAAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
102938892 AAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
102938931 GAAGCCCGAAGGCTAAGTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
102938970 GAAGCCCGAAGGCTAACTGAAGCACACAAGTACTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
102939009 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
102939032 TCATCAGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.39, C:0.24, G:0.25, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:102941763 original size:9 final size:9
Alignment explanation
Indices: 102941741--102941796 Score: 85
Period size: 9 Copynumber: 6.0 Consensus size: 9
102941731 ATTGTGTGTT
102941741 TGAATAGAAA
1 TGAATAG-AA
102941751 TGAATAGAA
1 TGAATAGAA
102941760 TGAATAGAAA
1 TGAATAG-AA
*
102941770 TGGATAGAA
1 TGAATAGAA
102941779 TGAATAGAA
1 TGAATAGAA
102941788 TGAATAGAA
1 TGAATAGAA
102941797 AAAAAAGAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
9 28 0.65
10 15 0.35
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.21
Consensus pattern (9 bp):
TGAATAGAA
Found at i:102941765 original size:19 final size:19
Alignment explanation
Indices: 102941741--102941796 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
102941731 ATTGTGTGTT
102941741 TGAATAGAAATGAATAGAA
1 TGAATAGAAATGAATAGAA
*
102941760 TGAATAGAAATGGATAGAA
1 TGAATAGAAATGAATAGAA
102941779 TGAATAG-AATGAATAGAA
1 TGAATAGAAATGAATAGAA
102941797 AAAAAAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
18 10 0.29
19 25 0.71
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.21
Consensus pattern (19 bp):
TGAATAGAAATGAATAGAA
Found at i:102942707 original size:30 final size:30
Alignment explanation
Indices: 102942672--102942731 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
102942662 TATTTTATTA
102942672 TTAATTTTCTTATTATTTTA-AAGGCATTTG
1 TTAATTTTCTTATTATTTTAGAA-GCATTTG
*
102942702 TTAATTTTTTTATTATTTTAGAAGCATTTG
1 TTAATTTTCTTATTATTTTAGAAGCATTTG
102942732 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTCTTATTATTTTAGAAGCATTTG
Found at i:102945162 original size:22 final size:22
Alignment explanation
Indices: 102945145--102945216 Score: 117
Period size: 22 Copynumber: 3.3 Consensus size: 22
102945135 CCCACACACT
102945145 CGTGTGCAACCCCTCACAGGCC
1 CGTGTGCAACCCCTCACAGGCC
*
102945167 CGTGTGCAACCCCTCATAGGCC
1 CGTGTGCAACCCCTCACAGGCC
* *
102945189 CGTGTGCAACCCCTAATAGGCC
1 CGTGTGCAACCCCTCACAGGCC
102945211 CGTGTG
1 CGTGTG
102945217 GACAGGTACA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.18, C:0.39, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTGTGCAACCCCTCACAGGCC
Found at i:102947174 original size:94 final size:94
Alignment explanation
Indices: 102947013--102947217 Score: 365
Period size: 94 Copynumber: 2.2 Consensus size: 94
102947003 ATATGGCTTA
* *
102947013 AGCACACGGGCGTATGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATGGACAGAGAGCT
1 AGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGACAGAGAGCT
102947078 CTATGGGCACGGGACACAGGCGTGGCCTT
66 CTATGGGCACGGGACACAGGCGTGGCCTT
102947107 AGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGACAGAGAGCT
1 AGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGACAGAGAGCT
* * *
102947172 CTATGGGTACGGGACACGGGCGTGTCCTT
66 CTATGGGCACGGGACACAGGCGTGGCCTT
102947201 AGCACACGGGCGTGTGC
1 AGCACACGGGCGTGTGC
102947218 TAAGCTTCCA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 106 1.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (94 bp):
AGCACACGGGCGTGTGCCTTGGCCATGTGACCCTAACTTGTTCATGACCAAATAGACAGAGAGCT
CTATGGGCACGGGACACAGGCGTGGCCTT
Found at i:102949197 original size:19 final size:19
Alignment explanation
Indices: 102949173--102949209 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
102949163 ATTATCAAGT
102949173 GATAATTAAGACCAATTTA
1 GATAATTAAGACCAATTTA
*
102949192 GATAATTAAGACTAATTT
1 GATAATTAAGACCAATTT
102949210 GGTTGTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (19 bp):
GATAATTAAGACCAATTTA
Found at i:102952677 original size:3 final size:3
Alignment explanation
Indices: 102952671--102952739 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
102952661 ATCTAAGATT
* * *
102952671 TTA TTA TTA TTA TTA TTA TTA TTA TTAA TTA TTA GTA TGTT TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA T-TA TTA TTA
*
102952718 TTA -AA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
102952740 TTTAAATTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
2 1 0.02
3 51 0.89
4 5 0.09
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:102952848 original size:23 final size:24
Alignment explanation
Indices: 102952822--102952880 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
102952812 ATAATGACAA
*
102952822 TTGTAATAAAA-ATAT-TGGTACAT
1 TTGTAATAAAAGATATAT-GTACAC
102952845 TTGTAATAAATAGATATATGTACAC
1 TTGTAATAAA-AGATATATGTACAC
*
102952870 TCGTAATAAAA
1 TTGTAATAAAA
102952881 TAATTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 18 0.58
26 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (24 bp):
TTGTAATAAAAGATATATGTACAC
Found at i:102953103 original size:22 final size:21
Alignment explanation
Indices: 102953071--102953111 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
102953061 TAAACAAAGT
102953071 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
102953092 AAATAAAAAGAAACAAAGAA
1 AAAT-AAAAGAAACAAAGAA
102953112 AAGAAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:102954159 original size:39 final size:38
Alignment explanation
Indices: 102954070--102954165 Score: 99
Period size: 39 Copynumber: 2.5 Consensus size: 38
102954060 TGGATAGATT
* * *
102954070 TGATGAGGTACTGGGTACCAACTTTACTTCGGCTAGGTC
1 TGATGAGGCACTGGGTGCCAACTTTACTTCGACTA-GTC
*
102954109 -GATG-GGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 TGATGAGG-CACTGGGTGCCAACT-TTACTTCG-ACTAGTC
102954147 TGATGAGGCACTGGGTGCC
1 TGATGAGGCACTGGGTGCC
102954166 TTATTGGTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
37 2 0.04
38 18 0.38
39 22 0.47
40 5 0.11
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (38 bp):
TGATGAGGCACTGGGTGCCAACTTTACTTCGACTAGTC
Found at i:102954290 original size:18 final size:18
Alignment explanation
Indices: 102954267--102954307 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
102954257 AATGAGAAAA
102954267 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
102954285 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
102954303 AGAAA
1 AGAAA
102954308 GAGAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:102956282 original size:14 final size:14
Alignment explanation
Indices: 102956263--102956289 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
102956253 TTAATTACGT
102956263 TAAAAATATTTTTC
1 TAAAAATATTTTTC
102956277 TAAAAATATTTTT
1 TAAAAATATTTTT
102956290 ATTTTTCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TAAAAATATTTTTC
Found at i:102960006 original size:19 final size:18
Alignment explanation
Indices: 102959982--102960027 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
102959972 TGATACTCTA
*
102959982 TCTCTAAAATCGATGTATT
1 TCTCTAAAATAGAT-TATT
*
102960001 TCTCTAAAAATAGCTTATT
1 TCTCT-AAAATAGATTATT
102960020 TCTCTAAA
1 TCTCTAAA
102960028 TTTTGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 14 0.58
20 7 0.29
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (18 bp):
TCTCTAAAATAGATTATT
Found at i:102967205 original size:73 final size:73
Alignment explanation
Indices: 102967086--102967234 Score: 298
Period size: 73 Copynumber: 2.0 Consensus size: 73
102967076 AATGTCACTC
102967086 GACGAGCACTGAATAATTGTTTTCGTAATGGTTTGTCATTAGGAGGAGCTTAATCACGATACTAT
1 GACGAGCACTGAATAATTGTTTTCGTAATGGTTTGTCATTAGGAGGAGCTTAATCACGATACTAT
102967151 AGTAGAAT
66 AGTAGAAT
102967159 GACGAGCACTGAATAATTGTTTTCGTAATGGTTTGTCATTAGGAGGAGCTTAATCACGATACTAT
1 GACGAGCACTGAATAATTGTTTTCGTAATGGTTTGTCATTAGGAGGAGCTTAATCACGATACTAT
102967224 AGTAGAAT
66 AGTAGAAT
102967232 GAC
1 GAC
102967235 TTCATGACTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (73 bp):
GACGAGCACTGAATAATTGTTTTCGTAATGGTTTGTCATTAGGAGGAGCTTAATCACGATACTAT
AGTAGAAT
Found at i:102969229 original size:22 final size:21
Alignment explanation
Indices: 102969183--102969243 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
102969173 TTCTTTTAGA
* *
102969183 TTTTTTTATTTTTTCTGAATT
1 TTTTTTTATTTTTTATGAATG
102969204 TTTTTTTATGTATTTTAT-AATG
1 TTTTTTTAT-T-TTTTATGAATG
102969226 TTTTTTATAATTTTTTAT
1 TTTTTT-T-ATTTTTTAT
102969244 TTTATTACCA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 9 0.26
22 16 0.47
23 7 0.21
24 2 0.06
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTTTTATTTTTTATGAATG
Found at i:102969275 original size:17 final size:16
Alignment explanation
Indices: 102969226--102969276 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
102969216 TTTTATAATG
102969226 TTTTTTATAATTTTTTA
1 TTTTTTATAA-TTTTTA
**
102969243 TTTTATTACCATTTTTA
1 TTTT-TTATAATTTTTA
102969260 TTTTTTATAATCTTTTA
1 TTTTTTATAAT-TTTTA
102969277 CCAATTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.18
17 19 0.68
18 4 0.14
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTTATAATTTTTA
Found at i:102969275 original size:18 final size:18
Alignment explanation
Indices: 102969226--102969275 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 18
102969216 TTTTATAATG
102969226 TTTTTTATAAT-TTTTTA
1 TTTTTTATAATCTTTTTA
* *
102969243 --TTTTATTACCATTTTTA
1 TTTTTTATAATC-TTTTTA
102969260 TTTTTTATAATCTTTT
1 TTTTTTATAATCTTTT
102969276 ACCAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
15 7 0.28
17 6 0.24
18 4 0.16
19 8 0.32
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTATAATCTTTTTA
Found at i:102969935 original size:22 final size:22
Alignment explanation
Indices: 102969909--102969977 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 22
102969899 CACTAATGAA
*
102969909 CAGAGAGCACGGATGTGCTAAT
1 CAGAGAGCACGGACGTGCTAAT
*
102969931 CAGAGAGCACTGACGTGCTAATAAT
1 CAGAGAGCACGGACGTGC---TAAT
* *
102969956 CAGATAGCACTGACGTGCTAAT
1 CAGAGAGCACGGACGTGCTAAT
102969978 AATCAGATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 20 0.49
25 21 0.51
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (22 bp):
CAGAGAGCACGGACGTGCTAAT
Found at i:102969964 original size:25 final size:25
Alignment explanation
Indices: 102969927--102969988 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
102969917 ACGGATGTGC
*
102969927 TAATCAGAGAGCACTGACGTGCTAA
1 TAATCAGATAGCACTGACGTGCTAA
102969952 TAATCAGATAGCACTGACGTGCTAA
1 TAATCAGATAGCACTGACGTGCTAA
102969977 TAATCAGATAGC
1 TAATCAGATAGC
102969989 GCGCTAAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (25 bp):
TAATCAGATAGCACTGACGTGCTAA
Found at i:102971463 original size:3 final size:3
Alignment explanation
Indices: 102971455--102971486 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
102971445 TATCTTTCTT
102971455 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
102971487 TAAAATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:102971556 original size:12 final size:12
Alignment explanation
Indices: 102971459--102971550 Score: 53
Period size: 12 Copynumber: 7.2 Consensus size: 12
102971449 TTTCTTTAAT
102971459 AATAATAATA-A
1 AATAATAATATA
102971470 TAATAATAATAATA
1 -AATAATAAT-ATA
102971484 ATATAA-AATATA
1 A-ATAATAATATA
* **
102971496 AATATCTTTTATAA
1 AATA-ATAATAT-A
102971510 TAATAATAATACTA
1 -AATAATAATA-TA
* *
102971524 ATGTCATAATATA
1 A-ATAATAATATA
102971537 AATAATAATATA
1 AATAATAATATA
102971549 AA
1 AA
102971551 ATATAAATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
11 3 0.05
12 24 0.39
13 12 0.20
14 17 0.28
15 5 0.08
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (12 bp):
AATAATAATATA
Found at i:102972518 original size:64 final size:64
Alignment explanation
Indices: 102972412--102972536 Score: 223
Period size: 64 Copynumber: 2.0 Consensus size: 64
102972402 CATTACTTAA
* * *
102972412 CCCCTTCGGAGTTCATGGTTGTCTCTCTCAACAATGTTTACTCTAATATTTGAATTTGTATCTT
1 CCCCTTCGAAGTTCATGGTTATCTCTCTCAACAATGTCTACTCTAATATTTGAATTTGTATCTT
102972476 CCCCTTCGAAGTTCATGGTTATCTCTCTCAACAATGTCTACTCTAATATTTGAATTTGTAT
1 CCCCTTCGAAGTTCATGGTTATCTCTCTCAACAATGTCTACTCTAATATTTGAATTTGTAT
102972537 ACTCCCTTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (64 bp):
CCCCTTCGAAGTTCATGGTTATCTCTCTCAACAATGTCTACTCTAATATTTGAATTTGTATCTT
Found at i:102972902 original size:18 final size:17
Alignment explanation
Indices: 102972881--102972929 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
102972871 TAATTTATTA
102972881 ATAATTTTATATTTTTAT
1 ATAATTTT-TATTTTTAT
*
102972899 ATAATTTCTTATTTTTTT
1 ATAATTT-TTATTTTTAT
102972917 ATTAATTTTTATT
1 A-TAATTTTTATT
102972930 CTATCTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 21 0.75
19 7 0.25
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (17 bp):
ATAATTTTTATTTTTAT
Found at i:102989532 original size:35 final size:35
Alignment explanation
Indices: 102989505--102989671 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
102989495 CATGGCAAAG
102989505 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
* *
102989540 TATGAAATATAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
*
102989575 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGC
** * * *
102989615 TAAGAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGC
**
102989650 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
102989672 TCAATGAGGA
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 80 0.70
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:102989595 original size:40 final size:40
Alignment explanation
Indices: 102989516--102989632 Score: 131
Period size: 40 Copynumber: 3.0 Consensus size: 40
102989506 GTGAAATGTA
102989516 GGTATGGTATTATCCATACTGAGCTATGAAA--TA--TA-
1 GGTATGGTATTATCCATACTGAGCTATGAAATGTAGGTAT
*
102989551 GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
1 GGTATGGTATTATCCATACTGAGCTATGAAATGTAGGTAT
* * *
102989591 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTAT--TATCCATACTGAGCTATGAAATGTAGGTAT
102989631 GG
1 GG
102989633 CATTTCCCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
35 30 0.43
37 2 0.03
38 3 0.04
39 2 0.03
40 33 0.47
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (40 bp):
GGTATGGTATTATCCATACTGAGCTATGAAATGTAGGTAT
Found at i:102989643 original size:75 final size:74
Alignment explanation
Indices: 102989505--102989675 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 74
102989495 CATGGCAAAG
* *
102989505 TGTGAAATGTAGGTATGGTA-TT---ATCCATACTGAGCTATGAAATATAGGTATGGTATTATCC
1 TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATATAGGTATGGCATTATCC
*
102989566 ATACTGAGC
66 ATACCGAGC
* *
102989575 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
1 TGTGAAATGTAGGTATGGTATT-TCAAATCCATACTGAGCTAAGAAATATAGGTATGGCATTAT-
*
102989639 CCATACCGAGT
64 CCATACCGAGC
**
102989650 TGAAAAATGTAGGTATGGTATTTCAA
1 TGTGAAATGTAGGTATGGTATTTCAA
102989676 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 20 0.23
71 1 0.01
72 1 0.01
74 5 0.06
75 60 0.69
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATATAGGTATGGCATTATCC
ATACCGAGC
Found at i:102990874 original size:48 final size:46
Alignment explanation
Indices: 102990811--102990943 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 46
102990801 GCGTTACAGA
* *
102990811 GGCCAATGTCATGTCCCAGACATGGTCTTACATTGGCACTCGTC-TCAA-T
1 GGCCGATG-CATGTCCCAGACATGGTCTTACACTGG--CTCG-CAT-AATT
102990860 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATTT
1 GGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCGCATAA-TT
*
102990907 GGCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTC
1 GGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTC
102990944 ACACAAATGA
Statistics
Matches: 76, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
45 3 0.04
46 19 0.25
47 15 0.20
48 39 0.51
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATT
Found at i:102998805 original size:30 final size:30
Alignment explanation
Indices: 102998771--102998833 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
102998761 ACTTAACAAG
102998771 CAAATG-ATTCTAAAATAATAAAAAAATTAA
1 CAAATGCATT-TAAAATAATAAAAAAATTAA
*
102998801 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCATTTAAAATAATAAAAAAATTAA
102998831 CAA
1 CAA
102998834 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCATTTAAAATAATAAAAAAATTAA
Found at i:103016833 original size:6 final size:6
Alignment explanation
Indices: 103016822--103016848 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
103016812 CAGCCAAAAC
103016822 ATCCAG ATCCAG ATCCAG ATCCAG ATC
1 ATCCAG ATCCAG ATCCAG ATCCAG ATC
103016849 ATCATCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCCAG
Found at i:103024900 original size:89 final size:89
Alignment explanation
Indices: 103024749--103024922 Score: 312
Period size: 89 Copynumber: 2.0 Consensus size: 89
103024739 CTGTGAACCT
*
103024749 CTTAAATTTTAGTTACTGAATTTTTGAGCTTACGTCATACCCCATGTACTAAACTTGTTTTGGGT
1 CTTAAATTTTAGTTACTAAATTTTTGAGCTTACGTCATACCCCATGTACTAAACTTGTTTTGGGT
103024814 CTTCATTTAATTAGTTAGATAGAC
66 CTTCATTTAATTAGTTAGATAGAC
** *
103024838 CTTAAATTTTAGTTACTAAATTTTTGAGCTTATTTTATACCCCATGTACTAAACTTGTTTTGGGT
1 CTTAAATTTTAGTTACTAAATTTTTGAGCTTACGTCATACCCCATGTACTAAACTTGTTTTGGGT
103024903 CTTCATTTAATTAGTTAGAT
66 CTTCATTTAATTAGTTAGAT
103024923 GGGCCCTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.45
Consensus pattern (89 bp):
CTTAAATTTTAGTTACTAAATTTTTGAGCTTACGTCATACCCCATGTACTAAACTTGTTTTGGGT
CTTCATTTAATTAGTTAGATAGAC
Found at i:103025843 original size:20 final size:20
Alignment explanation
Indices: 103025818--103025863 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
103025808 GATATATCCA
103025818 TTTGGTGAAAATACTCTGAT
1 TTTGGTGAAAATACTCTGAT
103025838 TTTGGTGAAAATACTCTGAT
1 TTTGGTGAAAATACTCTGAT
103025858 TTTGGT
1 TTTGGT
103025864 TAAAGATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (20 bp):
TTTGGTGAAAATACTCTGAT
Found at i:103042213 original size:116 final size:117
Alignment explanation
Indices: 103042029--103042242 Score: 367
Period size: 116 Copynumber: 1.8 Consensus size: 117
103042019 CTGTAATGTG
* *
103042029 TTTTATTTTATTTTTTCTGATTGTTTGTTTCCCTTTGTATTTAACGACATTTTCTTGTAAATATT
1 TTTTATTTTATTTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATT
*
103042094 TGAATAATTGAATCCCATTAATTAGATTTTATATTGCCTGTTATGTGTTTTA
66 TGAATAATTGAATCCCATTAATGAGATTTTATATTGCCTGTTATGTGTTTTA
*
103042146 TTTTATTTTATTTTTT-TGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATCTT
1 TTTTATTTTATTTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATT
* *
103042210 TGAATGATTGAATCCCATTAATGAGGTTTTATA
66 TGAATAATTGAATCCCATTAATGAGATTTTATA
103042243 GCGAAGATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
116 75 0.82
117 16 0.18
ACGTcount: A:0.23, C:0.11, G:0.12, T:0.54
Consensus pattern (117 bp):
TTTTATTTTATTTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATT
TGAATAATTGAATCCCATTAATGAGATTTTATATTGCCTGTTATGTGTTTTA
Found at i:103042386 original size:42 final size:42
Alignment explanation
Indices: 103042340--103042434 Score: 118
Period size: 42 Copynumber: 2.3 Consensus size: 42
103042330 GTAAATACCG
* * *
103042340 CTCATATCCCAACTTGGAATAATCTATTCCAGGGTTATCCCT
1 CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
* ** *
103042382 CTCATTTCCCCTCTTAGAATAATCAATTCCGGGGATATCCCT
1 CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
*
103042424 CTGATATCCCA
1 CTCATATCCCA
103042435 TCCCGGTTCG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.33
Consensus pattern (42 bp):
CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
Found at i:103042574 original size:16 final size:16
Alignment explanation
Indices: 103042555--103042608 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
103042545 CATTCCGAGG
103042555 ATATCCCGGCTTAGGT
1 ATATCCCGGCTTAGGT
**
103042571 ATATCCCGAATTAGG-
1 ATATCCCGGCTTAGGT
*
103042586 ATAGCCCGGCTTAGGT
1 ATATCCCGGCTTAGGT
103042602 ATATCCC
1 ATATCCC
103042609 ACTTGCGGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 12 0.39
16 19 0.61
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (16 bp):
ATATCCCGGCTTAGGT
Found at i:103042619 original size:31 final size:31
Alignment explanation
Indices: 103042552--103042634 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 31
103042542 TCCCATTCCG
103042552 AGGATATCCCGGCTTAGGTATATCCCGAATT
1 AGGATATCCCGGCTTAGGTATATCCCGAATT
* *
103042583 AGGATAGCCCGGCTTAGGTATATCCC-ACTT
1 AGGATATCCCGGCTTAGGTATATCCCGAATT
* * *
103042613 GCGGATATCCCGGTTTCGGTAT
1 -AGGATATCCCGGCTTAGGTAT
103042635 TAATTACCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 3 0.07
31 42 0.93
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (31 bp):
AGGATATCCCGGCTTAGGTATATCCCGAATT
Found at i:103050036 original size:16 final size:16
Alignment explanation
Indices: 103050015--103050049 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
103050005 GTAAGTACTG
103050015 TGTTATTGGGTTAGCT
1 TGTTATTGGGTTAGCT
*
103050031 TGTTATTGGGTTGGCT
1 TGTTATTGGGTTAGCT
103050047 TGT
1 TGT
103050050 GTCGGAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.51
Consensus pattern (16 bp):
TGTTATTGGGTTAGCT
Found at i:103054418 original size:78 final size:78
Alignment explanation
Indices: 103054272--103054420 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 78
103054262 CTCATATTCT
* * *
103054272 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC
103054337 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * *
103054350 ACCATTAAACCCTGATCCCTTGATCTCATCC-GCTAGGAGAGTTGGTGATCATGTTGATAGCGAC
1 ACCATTAAACCATGATCCCTTGATCTCA-CCAGCTAGGAGAGTCGGTGATCATGTTGATAACGAC
103054414 CACCATG
65 CACCATG
103054421 ACGTTGTGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (78 bp):
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC
ACCATGGAGTTCG
Found at i:103055243 original size:72 final size:71
Alignment explanation
Indices: 103055146--103055290 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 71
103055136 ACTTGAACAC
103055146 TTGTCTGTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTGT
1 TTGTCTGTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTGT
103055211 TTGATT
66 TTGATT
103055217 TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
1 TTGTCTG-TTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
103055282 TTTGATT
65 TTTGATT
103055289 TT
1 TT
103055291 CTTTTTTCAA
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 7 0.10
72 66 0.90
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (71 bp):
TTGTCTGTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTGT
TTGATT
Found at i:103063665 original size:53 final size:53
Alignment explanation
Indices: 103063529--103063717 Score: 197
Period size: 52 Copynumber: 3.6 Consensus size: 53
103063519 ATGTGATACA
* ** *
103063529 TGATTCCGTATAAGAACATAGCCGGGCTATGGCATTGGTACCATGTGATT-CG
1 TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG
* * *
103063581 T-ATTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTGATTATG
1 TGATT-CCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG
* * * *
103063634 TGATTCCGTATAAGACCATATCCGGGATATGGCATTGGTATGATATCA-TATG
1 TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG
* * * **
103063686 TG-GTCCGTGTAAGACCATGGTAGGGCTATGGC
1 TGATTCCGTATAAGACCATAGCCGGGCTATGGC
103063718 TTCGGTGTGT
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
51 26 0.23
52 46 0.41
53 38 0.34
54 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG
Found at i:103063716 original size:51 final size:52
Alignment explanation
Indices: 103063586--103063723 Score: 129
Period size: 53 Copynumber: 2.6 Consensus size: 52
103063576 ATTCGTATTC
* * * * *
103063586 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTGATTATGTGATT
1 CCGTATAAGACCAT-GATGGGCTATGGCATCGGTATGATATCATTATGTGAGT
* *
103063639 CCGTATAAGACCAT-ATCCGGGATATGGCATTGGTATGATATCA-TATGTG-GT
1 CCGTATAAGACCATGAT--GGGCTATGGCATCGGTATGATATCATTATGTGAGT
* * *
103063690 CCGTGTAAGACCATGGTAGGGCTATGGCTTCGGT
1 CCGTATAAGACCATGAT-GGGCTATGGCATCGGT
103063724 GTGTGATGTG
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
51 28 0.41
52 7 0.10
53 34 0.49
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (52 bp):
CCGTATAAGACCATGATGGGCTATGGCATCGGTATGATATCATTATGTGAGT
Done.